Citrus Sinensis ID: 002360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-
Protein Sequence
MINISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Secondary Structure (PSIPRED)
cEEEEEccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEcccccccccHHHHccccccEEEcccccccccccEEEccccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHcccccccEEEccccccccccccHHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccccccccccccccccccEEEEEccccccccHHHHHHccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEccccccccccccEEEccccEEEEEEcccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEcccccccccccHHcccccccccccccccccccEEccccccEEEEEEEEEEcccHHHHHHHccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcEEEEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEEcccccccccHcccccccccccccHHHHHHHcccEEEccccccccccccHHHcccccccEEEccccccccccccccccccccEEEEccccccccccccHHHHcccccccEEEccccccccccccHHHHccccccEEEEccccccccccccccccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEccccccccccccHHHcccccccEEEcccccccccccHHHHcccHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHHccccccEEEcccccEEEEccccccccccEEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHHHHHcccEEEccccccccccccHHcccccccccccccccEEEEEccccccccccHHHccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHcHcccccccEEEEccccccccccHHHHcccccEEEEcccccccccccHHHHHHccccEEEEEccccccccccHHHHccccccEEEcccccccccccHHHHcHHHHHHcccccccccccccccccccHHHHHEEEcccccHHHHccccEEEEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHccc
Coil and Loop (DISEMBL)
minislcngtscIESEREALLKLKhdlrdpshrlaswigdngdcckwggvlcgnftghvlelnlqnpfspddneAYQRSMLvgkinpslleLKHLvhldlsgndfqgiqiPKYLASLVNLRYLNLSqarftgmiphqlgnlsnlqyldlsGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSfcelhhfpllssanfsslttldlsgnqfqgqipsrlgnltslkhldlYSNQFNSAVLGWLsklndlevlslednrlqgdisslglDNLTSIQKLLLSWNdelggkiptsfgklckltsfsmastKLSQDISEILGIFSGCVAYELESLYLRGCQIFghltnqlgqfkrlnflglsnnqmdgsiplslgqmanlesldlsnnklngtvseIHFVNLTKLVSFLANANslifkinpnwvppfqLTVLELrschlgprfpLWLQLQKKLndldisstrisdkipRAFWNSIFQYYYLNVSgnqiyggvpkfdspsmpliitpslllgsifdlsnnalsgsIFHLICQGENFSKNIEFLKLSTNhfsegipdcwmnwprlrtlnlgnnnftgslpmsigtlTSLRSLNLRnnrlsgviptsfknfSILEaldvgenelvgsiptwIGERFSRLMILILRsnkfhgdfpiQLCRLASLQILDVAYNSLLGTIPRCINNfsamatadssdqssDILYAfsgdnkivedTSLVMKGFLVEYNSILNLVRSIDIsmnnfsgeipvevtnlqglqslnlshnlftgripdnigvMRSIESLdfsanqlsgqipqsmsnlsFLNYLNLsnnnlngeipsstqlqsfdassfagndlcgaplsscteknaivtddqnrigneedgdevdWTLYVSMALGFVVGFWcfigpllsnkrwrYKYFHFLDGIGDKFVYFVRRCY
Flexible Loop (DISEMBL)
minislcngtscIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNdldisstrisdkiprAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAivtddqnrigneeDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Low Complexity Region (SEG)
MINISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSllelkhlvhldlSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGtltslrslnlrnnrlsGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMsnlsflnylnlsnnnlnGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Disordered region (IsUnstruct)
*****LCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPF*****EAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA*********DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA************NLSFLNYLNLS************************NDLCGAPLSSCTEKNAIVT***********GDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRC*
Disordered Region (DISOPRED)
MIN*****GT**IESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATA********ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGA****************************DWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Disordered Region (DISEMBL)
MINISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Disordered Region (DISPRO)
MINISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTE***************EDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFVRRCY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	931	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.820	0.902	0.298	2e-78
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.847	0.631	0.320	1e-75
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.848	0.630	0.298	3e-72
Q9FL28	1173	LRR receptor-like serine/	no	no	0.803	0.637	0.290	9e-68
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.845	0.660	0.289	8e-60
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.731	0.618	0.273	2e-55
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.628	0.530	0.315	3e-55
Q9LP24	1120	Probable leucine-rich rep	no	no	0.775	0.644	0.284	2e-53
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.709	0.581	0.284	3e-53
O49318	1124	Probable leucine-rich rep	no	no	0.749	0.620	0.278	1e-52

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  294 bits (753), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 269/901 (29%), Positives = 418/901 (46%), Gaps = 137/901 (15%)

Query: 12  CIESEREALLKLKHD--LRDPSHRLASWIG---DNGDCCKWGGVLCGNFTGHVLELNLQN 66
           C + +R+ALL+ + +  +    H +  W G    + DCC W GV C + +G V+ L++ N
Sbjct: 34  CRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWNGVTCNDKSGQVISLDIPN 93

Query: 67  PFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLS 126
            F  +            K N SL +L++L HLDL+  +  G +IP  L +L +L  +NL 
Sbjct: 94  TFLNN----------YLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLSHLTLVNLY 142

Query: 127 QARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDS 186
             +F G IP  +GNL+ L++L L+     L  E  S L  LS L       VNL   S+ 
Sbjct: 143 FNKFVGEIPASIGNLNQLRHLILANNV--LTGEIPSSLGNLSRL-------VNLELFSNR 193

Query: 187 LL--VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL 244
           L+  + +S+  LK+L+                      L L+ N   G+IPS LGNL++L
Sbjct: 194 LVGKIPDSIGDLKQLR---------------------NLSLASNNLIGEIPSSLGNLSNL 232

Query: 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDEL 304
            HL L  NQ    V   +  L +L V+S E+N L G+I  +   NLT +   +LS N+  
Sbjct: 233 VHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI-PISFANLTKLSIFVLSSNN-F 290

Query: 305 GGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLT-N 363
               P        L  F ++    S    + L +        LES+YL+  Q  G +   
Sbjct: 291 TSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPS-----LESIYLQENQFTGPIEFA 345

Query: 364 QLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF 423
                 +L  L L  N++ G IP S+ ++ NLE LD+S+N   G +       ++KLV+ 
Sbjct: 346 NTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT----ISKLVNL 401

Query: 424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP 483
           L                                              LD+S   +  ++P
Sbjct: 402 L---------------------------------------------HLDLSKNNLEGEVP 416

Query: 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHL 543
              W    +   + +S N        F++ S    +   L      DL++N+  G I ++
Sbjct: 417 ACLW----RLNTMVLSHNSF----SSFENTSQEEALIEEL------DLNSNSFQGPIPYM 462

Query: 544 ICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWP-RLRTLNLGNNNFTGSLPMSIGTLTSL 602
           IC+      ++ FL LS N FS  IP C  N+   ++ LNLG+NNF+G+LP      T L
Sbjct: 463 ICK----LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPDIFSKATEL 518

Query: 603 RSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFH 662
            SL++ +N+L G  P S  N   LE ++V  N++    P+W+ E    L +L LRSNKF+
Sbjct: 519 VSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESLPSLHVLNLRSNKFY 577

Query: 663 GDFPIQLCRLA--SLQILDVAYNSLLGTI-PRCINNFSAMAT-ADSSDQSSDILYAFSGD 718
           G    +   +   SL+I+D+++N+  GT+ P   +N+  M T  +  DQ     + ++  
Sbjct: 578 GPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTEFWRYA-- 635

Query: 719 NKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFT 778
           +    +  +V KG  + +  I    R+ID S N  +G IP  +  L+ L+ LNLS N FT
Sbjct: 636 DSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFT 695

Query: 779 GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 838
             IP  +  +  +E+LD S N+LSGQIPQ ++ LSFL+Y+N S+N L G +P  TQ Q  
Sbjct: 696 SVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQ 755

Query: 839 DASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLY--VSMALGFVVGFW 896
             SSF  N         C +  A+    Q      ED  E +  ++  V+ A+ +  G  
Sbjct: 756 KCSSFLDNPGLYGLEDICRDTGALNPTSQ----LPEDLSEAEENMFNWVAAAIAYGPGVL 811

Query: 897 C 897
           C
Sbjct: 812 C 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  285 bits (729), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 286/891 (32%), Positives = 423/891 (47%), Gaps = 102/891 (11%)

Query: 13  IESEREALLKLKHDL-RDPSHR--LASWIGDNGDCCKWGGVLCGNFTG--HVLELNLQNP 67
           I ++ + LL++K  L  +P     L  W  DN + C W GV C N TG   V+ LNL   
Sbjct: 23  INNDLQTLLEVKKSLVTNPQEDDPLRQWNSDNINYCSWTGVTCDN-TGLFRVIALNLTG- 80

Query: 68  FSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQ 127
                        L G I+P      +L+HLDLS N+  G  IP  L++L +L  L L  
Sbjct: 81  -----------LGLTGSISPWFGRFDNLIHLDLSSNNLVG-PIPTALSNLTSLESLFLFS 128

Query: 128 ARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSL 187
            + TG IP QLG+L N++ L +     EL  +    L  L  L+ L ++   L+    S 
Sbjct: 129 NQLTGEIPSQLGSLVNIRSLRIGD--NELVGDIPETLGNLVNLQMLALASCRLTGPIPSQ 186

Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
           L    L  ++ L L    L         N S LT    + N   G IP+ LG L +L+ L
Sbjct: 187 L--GRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEIL 244

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK 307
           +L +N     +   L +++ L+ LSL  N+LQG I    L +L ++Q L LS N+ L G+
Sbjct: 245 NLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPK-SLADLGNLQTLDLSANN-LTGE 302

Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVA-YELESLYLRGCQIFGHLTNQLG 366
           IP  F  + +L    +A+  LS  + +     S C     LE L L G Q+ G +  +L 
Sbjct: 303 IPEEFWNMSQLLDLVLANNHLSGSLPK-----SICSNNTNLEQLVLSGTQLSGEIPVELS 357

Query: 367 QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
           + + L  L LSNN + GSIP +L ++  L  L L NN L GT+S     NLT L   +  
Sbjct: 358 KCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSP-SISNLTNLQWLVLY 416

Query: 427 ANSLIFKINPNWVPPFQLTVL-------------ELRSC-----------HLGPRFPLWL 462
            N+L  K+        +L VL             E+ +C           H     P  +
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSI 476

Query: 463 QLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPK---FDSPSMPLII 519
              K+LN L +    +   +P +  N   Q   L+++ NQ+ G +P    F      L++
Sbjct: 477 GRLKELNLLHLRQNELVGGLPASLGN-CHQLNILDLADNQLSGSIPSSFGFLKGLEQLML 535

Query: 520 TPSLLLGSIFD------------LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG 567
             + L G++ D            LS+N L+G+I H +C   ++   + F  ++ N F + 
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTI-HPLCGSSSY---LSF-DVTNNGFEDE 590

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
           IP    N   L  L LG N  TG +P ++G +  L  L++ +N L+G IP        L 
Sbjct: 591 IPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLT 650

Query: 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
            +D+  N L G IP W+G + S+L  L L SN+F    P +L     L +L +  NSL G
Sbjct: 651 HIDLNNNFLSGPIPPWLG-KLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNG 709

Query: 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747
           +IP+ I N  A+   +           FSG               L +    L+ +  + 
Sbjct: 710 SIPQEIGNLGALNVLNLDKNQ------FSGS--------------LPQAMGKLSKLYELR 749

Query: 748 ISMNNFSGEIPVEVTNLQGLQS-LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806
           +S N+ +GEIPVE+  LQ LQS L+LS+N FTG IP  IG +  +E+LD S NQL+G++P
Sbjct: 750 LSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVP 809

Query: 807 QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND-LCGAPLSSC 856
            S+ ++  L YLN+S NNL G++    Q   + A SF GN  LCG+PLS C
Sbjct: 810 GSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  273 bits (699), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 269/902 (29%), Positives = 396/902 (43%), Gaps = 112/902 (12%)

Query: 6   LCNGTSCIESEREALLKLKHD-LRDPSHR--LASWIGDNGDCCKWGGVLCGNFTGHVLEL 62
           L +G      + + LL+LK+  + +P     L  W   +   C W GV CG     ++ L
Sbjct: 19  LGSGQPGQRDDLQTLLELKNSFITNPKEEDVLRDWNSGSPSYCNWTGVTCGGR--EIIGL 76

Query: 63  NLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGI-------------- 108
           NL                L G I+PS+    +L+H+DLS N   G               
Sbjct: 77  NLSG------------LGLTGSISPSIGRFNNLIHIDLSSNRLVGPIPTTLSNLSSSLES 124

Query: 109 ----------QIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF---- 154
                      IP  L SLVNL+ L L      G IP   GNL NLQ L L+        
Sbjct: 125 LHLFSNLLSGDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLI 184

Query: 155 ------------------ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
                             EL     + +   + L     +F  L+ +  + L  N L +L
Sbjct: 185 PSRFGRLVQLQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAEL--NRLKNL 242

Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
           + L L              +  S+  L+L GNQ QG IP RL  L +L+ LDL SN    
Sbjct: 243 QTLNLGDNSFSGEIPSQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTG 302

Query: 257 AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316
            +     ++N LE L L  NRL G +      N TS+++L LS   +L G+IP       
Sbjct: 303 VIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLS-ETQLSGEIPAEISNCQ 361

Query: 317 KLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGL 376
            L    +++  L+  I + L         EL +LYL    + G L++ +     L    L
Sbjct: 362 SLKLLDLSNNTLTGQIPDSL-----FQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTL 416

Query: 377 SNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINP 436
            +N ++G +P  +G +  LE + L  N+ +G +  +   N T+L       N L  +I  
Sbjct: 417 YHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMP-VEIGNCTRLQEIDWYGNRLSGEIPS 475

Query: 437 NWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYL 496
           +      LT L LR   L    P  L    ++  +D++  ++S  IP +F        ++
Sbjct: 476 SIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFM 535

Query: 497 NVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 556
            +  N + G +P  DS    LI   +L   +  + S+N  +GSI  L       S ++  
Sbjct: 536 -IYNNSLQGNLP--DS----LINLKNL---TRINFSSNKFNGSISPLCGSSSYLSFDV-- 583

Query: 557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI 616
              + N F   IP        L  L LG N FTG +P + G ++ L  L++  N LSG+I
Sbjct: 584 ---TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGII 640

Query: 617 PTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQ 676
           P        L  +D+  N L G IPTW+G +   L  L L SNKF G  P ++  L ++ 
Sbjct: 641 PVELGLCKKLTHIDLNNNYLSGVIPTWLG-KLPLLGELKLSSNKFVGSLPTEIFSLTNIL 699

Query: 677 ILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEY 736
            L +  NSL G+IP+ I N  A+   +                  +E+  L   G L   
Sbjct: 700 TLFLDGNSLNGSIPQEIGNLQALNALN------------------LEENQL--SGPLPST 739

Query: 737 NSILNLVRSIDISMNNFSGEIPVEVTNLQGLQS-LNLSHNLFTGRIPDNIGVMRSIESLD 795
              L+ +  + +S N  +GEIPVE+  LQ LQS L+LS+N FTGRIP  I  +  +ESLD
Sbjct: 740 IGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLD 799

Query: 796 FSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLS 854
            S NQL G++P  + ++  L YLNLS NNL G++    Q   + A +F GN  LCG+PLS
Sbjct: 800 LSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPLS 857

Query: 855 SC 856
            C
Sbjct: 858 HC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  259 bits (661), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 252/866 (29%), Positives = 385/866 (44%), Gaps = 118/866 (13%)

Query: 14  ESEREALLKLKHDL-RDPSHRLASW-IGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPD 71
           E E EAL   K+ +  DP   L+ W I  +   C W G+ C + TGHV+ ++L       
Sbjct: 28  EPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDS-TGHVVSVSLL------ 80

Query: 72  DNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFT 131
                    L G ++P++  L +L  LDL+ N F G +IP  +  L  L  L L    F+
Sbjct: 81  ------EKQLEGVLSPAIANLTYLQVLDLTSNSFTG-KIPAEIGKLTELNQLILYLNYFS 133

Query: 132 GMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVIN 191
           G IP  +  L N+ YLDL      L  +    +   S L  +   + NL+       +  
Sbjct: 134 GSIPSGIWELKNIFYLDLRNNL--LSGDVPEEICKTSSLVLIGFDYNNLTGK-----IPE 186

Query: 192 SLHSLKELKLSFCELHHFP---LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
            L  L  L++     +H      +S    ++LT LDLSGNQ  G+IP   GNL +L+ L 
Sbjct: 187 CLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLV 246

Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI 308
           L  N     +   +   + L  L L DN+L G I +  L NL  +Q L + + ++L   I
Sbjct: 247 LTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPA-ELGNLVQLQALRI-YKNKLTSSI 304

Query: 309 PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
           P+S  +L +LT   ++   L   ISE +G         LE L L      G     +   
Sbjct: 305 PSSLFRLTQLTHLGLSENHLVGPISEEIGFLE-----SLEVLTLHSNNFTGEFPQSITNL 359

Query: 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANAN 428
           + L  L +  N + G +P  LG + NL +L   +N L G +            S ++N  
Sbjct: 360 RNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIP-----------SSISNCT 408

Query: 429 SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN 488
            L                                        LD+S  +++ +IPR F  
Sbjct: 409 GLKL--------------------------------------LDLSHNQMTGEIPRGFGR 430

Query: 489 SIFQYYYLNVSGNQIYGGVPK--FDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546
                 ++++  N   G +P   F+  ++               +++N L+G++  LI +
Sbjct: 431 --MNLTFISIGRNHFTGEIPDDIFNCSNL-----------ETLSVADNNLTGTLKPLIGK 477

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
                + +  L++S N  +  IP    N   L  L L +N FTG +P  +  LT L+ L 
Sbjct: 478 ----LQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLR 533

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
           + +N L G IP    +  +L  LD+  N+  G IP     +   L  L L+ NKF+G  P
Sbjct: 534 MYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALF-SKLESLTYLSLQGNKFNGSIP 592

Query: 667 IQLCRLASLQILDVAYNSLLGTIP----RCINNFSAMATADSSDQSSDILYAFSGDNKIV 722
             L  L+ L   D++ N L GTIP      + N        ++  +  I     G  ++V
Sbjct: 593 ASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKEL-GKLEMV 651

Query: 723 EDTSL---VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ---SLNLSHNL 776
           ++  L   +  G +         V ++D S NN SG IP EV   QG+    SLNLS N 
Sbjct: 652 QEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEV--FQGMDMIISLNLSRNS 709

Query: 777 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 836
           F+G IP + G M  + SLD S+N L+G+IP+S++NLS L +L L++NNL G +P S   +
Sbjct: 710 FSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFK 769

Query: 837 SFDASSFAGN-DLCGA--PLSSCTEK 859
           + +AS   GN DLCG+  PL  CT K
Sbjct: 770 NINASDLMGNTDLCGSKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  232 bits (592), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 272/938 (28%), Positives = 420/938 (44%), Gaps = 151/938 (16%)

Query: 13  IESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDD 72
           + SE  +L+  K  L +PS   +  +  +   C W GV C    G V            +
Sbjct: 23  LSSETTSLISFKRSLENPSLLSSWNVSSSASHCDWVGVTC--LLGRV------------N 68

Query: 73  NEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTG 132
           + +     L G+I   +  LK+L  L L+GN F G +IP  + +L +L+ L+LS    TG
Sbjct: 69  SLSLPSLSLRGQIPKEISSLKNLRELCLAGNQFSG-KIPPEIWNLKHLQTLDLSGNSLTG 127

Query: 133 MIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS 192
           ++P  L  L  L YLDLS  +F          SG SL    +IS   LS    SL V N+
Sbjct: 128 LLPRLLSELPQLLYLDLSDNHF----------SG-SLPPSFFISLPALS----SLDVSNN 172

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
             S  E+     +L           S+L+ L +  N F GQIPS +GN++ LK+    S 
Sbjct: 173 SLS-GEIPPEIGKL-----------SNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSC 220

Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQ-------GDISSLGLDNLTS------------- 292
            FN  +   +SKL  L  L L  N L+       G++ +L + NL S             
Sbjct: 221 FFNGPLPKEISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGN 280

Query: 293 ---IQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELES 349
              ++ L+LS+N  L G +P    ++  LT FS    +LS  +   +G +       L+S
Sbjct: 281 CKSLKSLMLSFNS-LSGPLPLELSEIPLLT-FSAERNQLSGSLPSWMGKWK-----VLDS 333

Query: 350 LYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTV 409
           L L   +  G + +++     L  L L++N + GSIP  L    +LE++DLS N L+GT+
Sbjct: 334 LLLANNRFSGEIPHEIEDCPMLKHLSLASNLLSGSIPRELCGSGSLEAIDLSGNLLSGTI 393

Query: 410 SEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLN 469
            E+ F   + L   L   N +   I  +                      LW   +  L 
Sbjct: 394 EEV-FDGCSSLGELLLTNNQINGSIPED----------------------LW---KLPLM 427

Query: 470 DLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF--DSPSMPLIITPSLLLGS 527
            LD+ S   + +IP++ W S         S N++ G +P    ++ S+  ++        
Sbjct: 428 ALDLDSNNFTGEIPKSLWKST-NLMEFTASYNRLEGYLPAEIGNAASLKRLV-------- 478

Query: 528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN 587
              LS+N L+G I   I +  + S     L L+ N F   IP    +   L TL+LG+NN
Sbjct: 479 ---LSDNQLTGEIPREIGKLTSLS----VLNLNANMFQGKIPVELGDCTSLTTLDLGSNN 531

Query: 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS---------FKNFSILE---ALDVGENE 635
             G +P  I  L  L+ L L  N LSG IP+            + S L+     D+  N 
Sbjct: 532 LQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSFLQHHGIFDLSYNR 591

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
           L G IP  +GE    L+ + L +N   G+ P  L RL +L ILD++ N+L G+IP+ + N
Sbjct: 592 LSGPIPEELGECLV-LVEISLSNNHLSGEIPASLSRLTNLTILDLSGNALTGSIPKEMGN 650

Query: 696 FSAMATADSSDQ--SSDILYAFSGDNKIVED--TSLVMKGFLVEYNSILNLVRSIDISMN 751
              +   + ++   +  I  +F     +V+   T   + G +      L  +  +D+S N
Sbjct: 651 SLKLQGLNLANNQLNGHIPESFGLLGSLVKLNLTKNKLDGPVPASLGNLKELTHMDLSFN 710

Query: 752 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
           N SGE+  E++ ++ L  L +  N FTG IP  +G +  +E LD S N LSG+IP  +  
Sbjct: 711 NLSGELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICG 770

Query: 812 LSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLSSCTEKNAIVTDDQNRI 870
           L  L +LNL+ NNL GE+PS    Q    +  +GN +LCG           +V  D    
Sbjct: 771 LPNLEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCG----------RVVGSDCKIE 820

Query: 871 GNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRW 908
           G +       W +   + LGF +  + F+    S +RW
Sbjct: 821 GTKL---RSAWGI-AGLMLGFTIIVFVFV---FSLRRW 851

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 233/852 (27%), Positives = 353/852 (41%), Gaps = 171/852 (20%)

Query: 13  IESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDD 72
           +  E   LL+ K  L D +  LASW   + + C W G+ C +                  
Sbjct: 24  LNEEGRVLLEFKAFLNDSNGYLASWNQLDSNPCNWTGIACTH------------------ 65

Query: 73  NEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTG 132
                              L+ +  +DL+G +  G   P  +  L  LR LN+S    +G
Sbjct: 66  -------------------LRTVTSVDLNGMNLSGTLSP-LICKLHGLRKLNVSTNFISG 105

Query: 133 MIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS 192
            IP  L    +L+ LDL                                         N 
Sbjct: 106 PIPQDLSLCRSLEVLDL---------------------------------------CTNR 126

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
            H +  ++L+                +L  L L  N   G IP ++GNL+SL+ L +YSN
Sbjct: 127 FHGVIPIQLTM-------------IITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSN 173

Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
                +   ++KL  L ++    N   G I S  +    S++ L L+ N  L G +P   
Sbjct: 174 NLTGVIPPSMAKLRQLRIIRAGRNGFSGVIPS-EISGCESLKVLGLAEN-LLEGSLPKQL 231

Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
            KL  LT   +   +LS +I   +G  S      LE L L      G +  ++G+  ++ 
Sbjct: 232 EKLQNLTDLILWQNRLSGEIPPSVGNIS-----RLEVLALHENYFTGSIPREIGKLTKMK 286

Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEI--HFVNLTKLVSFLANANSL 430
            L L  NQ+ G IP  +G + +   +D S N+L G + +   H +NL KL+    N    
Sbjct: 287 RLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFIPKEFGHILNL-KLLHLFENI--- 342

Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSI 490
                                  LGP  P  L     L  LD+S  R++  IP+      
Sbjct: 343 ----------------------LLGP-IPRELGELTLLEKLDLSINRLNGTIPQELQ--- 376

Query: 491 FQYYYLNVS--GNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGE 548
           F  Y +++    NQ+ G +P       PLI   S    S+ D+S N+LSG I    C+  
Sbjct: 377 FLPYLVDLQLFDNQLEGKIP-------PLIGFYSNF--SVLDMSANSLSGPIPAHFCR-- 425

Query: 549 NFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLR 608
              + +  L L +N  S  IP        L  L LG+N  TGSLP+ +  L +L +L L 
Sbjct: 426 --FQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLTALELH 483

Query: 609 NNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQ 668
            N LSG I         LE L +  N   G IP  IG   ++++   + SN+  G  P +
Sbjct: 484 QNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGN-LTKIVGFNISSNQLTGHIPKE 542

Query: 669 LCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ--SSDILYAFSGDNKIVEDTS 726
           L    ++Q LD++ N   G I + +     +     SD   + +I ++F    +++E   
Sbjct: 543 LGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLME--- 599

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRIPDNI 785
                              + +  N  S  IPVE+  L  LQ SLN+SHN  +G IPD++
Sbjct: 600 -------------------LQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSL 640

Query: 786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAG 845
           G ++ +E L  + N+LSG+IP S+ NL  L   N+SNNNL G +P +   Q  D+S+FAG
Sbjct: 641 GNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLVGTVPDTAVFQRMDSSNFAG 700

Query: 846 ND-LCGAPLSSC 856
           N  LC +  S C
Sbjct: 701 NHGLCNSQRSHC 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  217 bits (553), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 212/673 (31%), Positives = 314/673 (46%), Gaps = 88/673 (13%)

Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279
           L  LDLS N   G+IP  +GN +SL+ L L +NQF+  +   + KL  LE L + +NR+ 
Sbjct: 99  LKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNNRIS 158

Query: 280 GDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIF 339
           G +  + + NL S+ +L+ ++++ + G++P S G L +LTSF      +S  +   +G  
Sbjct: 159 GSLP-VEIGNLLSLSQLV-TYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSLPSEIG-- 214

Query: 340 SGCVAYELESLYLRGC---QIFGHLTNQLGQFKRLN------------------------ 372
            GC     ESL + G    Q+ G L  ++G  K+L+                        
Sbjct: 215 -GC-----ESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLE 268

Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
            L L  NQ+ G IP  LG + +LE L L  N LNGT+      NL+  +    + N+L  
Sbjct: 269 TLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPR-EIGNLSYAIEIDFSENALTG 327

Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQ 492
           +I         L +L L    L    P+ L   K L+ LD+S   ++  IP  F   +  
Sbjct: 328 EIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGF-QYLRG 386

Query: 493 YYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS---IFDLSNNALSGSIFHLICQGEN 549
            + L +  N + G +P            P L   S   + D+S+N LSG I   +C    
Sbjct: 387 LFMLQLFQNSLSGTIP------------PKLGWYSDLWVLDMSDNHLSGRIPSYLC---- 430

Query: 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRN 609
              N+  L L TN+ S  IP        L  L L  NN  G  P ++    ++ ++ L  
Sbjct: 431 LHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQ 490

Query: 610 NRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQL 669
           NR  G IP    N S L+ L + +N   G +P  IG   S+L  L + SNK  G+ P ++
Sbjct: 491 NRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-MLSQLGTLNISSNKLTGEVPSEI 549

Query: 670 CRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVM 729
                LQ LD+  N+  GT+P  + +   +            L   S +N  +  T  V 
Sbjct: 550 FNCKMLQRLDMCCNNFSGTLPSEVGSLYQLE-----------LLKLSNNN--LSGTIPVA 596

Query: 730 KGFLVEYNSILNLVRSIDISM--NNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRIPDNIG 786
            G         NL R  ++ M  N F+G IP E+ +L GLQ +LNLS+N  TG IP  + 
Sbjct: 597 LG---------NLSRLTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELS 647

Query: 787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN 846
            +  +E L  + N LSG+IP S +NLS L   N S N+L G IP    L++   SSF GN
Sbjct: 648 NLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIP---LLRNISMSSFIGN 704

Query: 847 D-LCGAPLSSCTE 858
           + LCG PL+ C +
Sbjct: 705 EGLCGPPLNQCIQ 717

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 240/844 (28%), Positives = 368/844 (43%), Gaps = 122/844 (14%)

Query: 15  SEREALLKLKHDLRDPSHRLASWIGDNG-----DCCKWGGVLCGNFTGHVLELNLQNPFS 69
           +E  ALLK K    + S +L+SW+ D        C  W GV C N  G + ELNL N   
Sbjct: 32  AEANALLKWKSTFTN-SSKLSSWVHDANTNTSFSCTSWYGVSC-NSRGSIEELNLTN--- 86

Query: 70  PDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
                                       ++ +  DF  I       SL NL Y++LS   
Sbjct: 87  --------------------------TGIEGTFQDFPFI-------SLSNLAYVDLSMNL 113

Query: 130 FTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLV 189
            +G IP Q GNLS L       +YF+L   + + L+G      +  S  NL   +   L 
Sbjct: 114 LSGTIPPQFGNLSKL-------IYFDL---STNHLTG-----EISPSLGNLKNLTVLYLH 158

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
            N L S+   +L              N  S+T L LS N+  G IPS LGNL +L  L L
Sbjct: 159 QNYLTSVIPSEL-------------GNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYL 205

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP 309
           Y N     +   L  +  +  L+L  N+L G I S  L NL ++  L L + + L G IP
Sbjct: 206 YENYLTGVIPPELGNMESMTDLALSQNKLTGSIPST-LGNLKNLMVLYL-YENYLTGVIP 263

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369
              G +  +T+ +++  KL+  I   LG         L   YL G      +  +LG  +
Sbjct: 264 PEIGNMESMTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGG-----IPPKLGNIE 318

Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS 429
            +  L LSNN++ GSIP SLG + NL  L L  N L G +      N+  ++    N N 
Sbjct: 319 SMIDLELSNNKLTGSIPSSLGNLKNLTILYLYENYLTGVIPP-ELGNMESMIDLQLNNNK 377

Query: 430 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN- 488
           L   I  ++     LT L L   +L    P  L   + + +LD+S  +++  +P +F N 
Sbjct: 378 LTGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNF 437

Query: 489 SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGE 548
           +  +  YL V  N + G +P       P +   S L   I D +N   +G     +C+G 
Sbjct: 438 TKLESLYLRV--NHLSGAIP-------PGVANSSHLTTLILDTNN--FTGFFPETVCKG- 485

Query: 549 NFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLR 608
              + ++ + L  NH    IP    +   L       N FTG +  + G    L  ++  
Sbjct: 486 ---RKLQNISLDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFS 542

Query: 609 NNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQ 668
           +N+  G I ++++    L AL +  N + G+IPT I    ++L+ L L +N   G+ P  
Sbjct: 543 HNKFHGEISSNWEKSPKLGALIMSNNNITGAIPTEIW-NMTQLVELDLSTNNLFGELPEA 601

Query: 669 LCRLASLQILDVAYNSLLGTIPRCINNFSAMATAD--SSDQSSDILYAFSGDNKIVEDTS 726
           +  L +L  L +  N L G +P  ++  + + + D  S++ SS+I   F           
Sbjct: 602 IGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLESLDLSSNNFSSEIPQTF----------- 650

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786
                     +S L L   +++S N F G IP  ++ L  L  L+LSHN   G IP  + 
Sbjct: 651 ----------DSFLKL-HDMNLSRNKFDGSIP-RLSKLTQLTQLDLSHNQLDGEIPSQLS 698

Query: 787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN 846
            ++S++ LD S N LSG IP +   +  L  +++SNN L G +P +   +   A +   N
Sbjct: 699 SLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPLPDTPTFRKATADALEEN 758

Query: 847 -DLC 849
             LC
Sbjct: 759 IGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 220/773 (28%), Positives = 342/773 (44%), Gaps = 112/773 (14%)

Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
           H + E++L   +L        +    L  L L  N F G IP+ L   T L  + L  N 
Sbjct: 68  HRVTEIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNS 127

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
            +  +   +  L  LEV ++  NRL G+I  +GL   +S+Q L +S N    G+IP+   
Sbjct: 128 LSGKLPPAMRNLTSLEVFNVAGNRLSGEIP-VGLP--SSLQFLDISSNT-FSGQIPSGLA 183

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373
            L +L   +++  +L+ +I   LG         L+ L+L    + G L + +     L  
Sbjct: 184 NLTQLQLLNLSYNQLTGEIPASLGNLQ-----SLQYLWLDFNLLQGTLPSAISNCSSLVH 238

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLT-KLVSFLANANSLIF 432
           L  S N++ G IP + G +  LE L LSNN  +GTV    F N +  +V    NA S I 
Sbjct: 239 LSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIV 298

Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQ 492
           +          L VL+L+   +  RFPLWL     L +LD+S    S +IP    N + +
Sbjct: 299 RPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGNLFSGEIPPDIGN-LKR 357

Query: 493 YYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSK 552
              L ++ N + G +P      + +    SL    + D   N+L G I   +     + K
Sbjct: 358 LEELKLANNSLTGEIP------VEIKQCGSL---DVLDFEGNSLKGQIPEFL----GYMK 404

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
            ++ L L  N FS  +P   +N  +L  LNLG NN  GS P+ +  LTSL  L+L  NR 
Sbjct: 405 ALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRF 464

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL 672
           SG +P S  N S L  L++  N   G IP  +G  F +L  L L      G+ P++L  L
Sbjct: 465 SGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLSKQNMSGEVPVELSGL 523

Query: 673 ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGF 732
            ++Q++ +  N+  G +P     FS++ +    + SS+   +FSG+              
Sbjct: 524 PNVQVIALQGNNFSGVVPE---GFSSLVSLRYVNLSSN---SFSGE-------------- 563

Query: 733 LVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792
           + +    L L+ S+ +S N+ SG IP E+ N   L+ L L  N   G IP ++  +  ++
Sbjct: 564 IPQTFGFLRLLVSLSLSDNHISGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLPRLK 623

Query: 793 SLDFSANQLSGQIP---------------------------QSMSNLSFLN--------- 816
            LD   N LSG+IP                             +SNL+ ++         
Sbjct: 624 VLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGE 683

Query: 817 -------------YLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLSSCTEKNAI 862
                        Y N+S+NNL GEIP+S   +  + S F+GN +LCG PL+   E +  
Sbjct: 684 IPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESSTA 743

Query: 863 VTDDQNRIGNEEDGDEVDWTLYVSMAL--GFVVGFWC--FIGPLLSNKRWRYK 911
               + R             L + MA    F++  +C  ++  LL   +WR K
Sbjct: 744 EGKKKKR----------KMILMIVMAAIGAFLLSLFCCFYVYTLL---KWRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 237/850 (27%), Positives = 356/850 (41%), Gaps = 152/850 (17%)

Query: 10  TSCIESEREALLKLK-HDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPF 68
           +  + S+ + LL+LK    +D  +RL +W G +   C W GV C +        +L    
Sbjct: 30  SESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLV--- 86

Query: 69  SPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA 128
                                     +  LDLS  +  GI  P  +  LVNL YLNL+  
Sbjct: 87  --------------------------VTSLDLSSMNLSGIVSPS-IGGLVNLVYLNLAYN 119

Query: 129 RFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLL 188
             TG IP ++GN S L+ + L+   F         ++ LS L    I    LS       
Sbjct: 120 ALTGDIPREIGNCSKLEVMFLNNNQF--GGSIPVEINKLSQLRSFNICNNKLSGPLPE-- 175

Query: 189 VINSLHSLKELKLSFCELHHFPLLSS-ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
            I  L++L+EL +++      PL  S  N + LTT     N F G IP+ +G   +LK L
Sbjct: 176 EIGDLYNLEEL-VAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGKCLNLKLL 234

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK 307
            L  N  +  +   +  L  L+ + L  N+  G I    + NLTS++ L L + + L G 
Sbjct: 235 GLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPK-DIGNLTSLETLAL-YGNSLVGP 292

Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367
           IP+  G +  L    +   +L+  I + LG  S  +  +     L      G +  +L +
Sbjct: 293 IPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLS-----GEIPVELSK 347

Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
              L  L L  N++ G IP  L ++ NL  LDLS N L G +    F NLT +       
Sbjct: 348 ISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTGPIPP-GFQNLTSMRQLQLFH 406

Query: 428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487
           NSL   I                   LG   PLW+        +D S  ++S KIP  F 
Sbjct: 407 NSLSGVIPQG----------------LGLYSPLWV--------VDFSENQLSGKIP-PFI 441

Query: 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQG 547
                   LN+  N+I+G +P       P ++    LL     +  N L+G     +C+ 
Sbjct: 442 CQQSNLILLNLGSNRIFGNIP-------PGVLRCKSLLQ--LRVVGNRLTGQFPTELCKL 492

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
            N S     ++L  N FS  +P       +L+ L+L  N F+ +LP  I  L++L + N+
Sbjct: 493 VNLSA----IELDQNRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNV 548

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667
            +N L+G IP+   N  +L+ LD+  N  +GS+P  +G    +L IL L  N+F G+ P 
Sbjct: 549 SSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGS-LHQLEILRLSENRFSGNIPF 607

Query: 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL 727
            +  L  L  L +  N   G+IP  +   S++  A                         
Sbjct: 608 TIGNLTHLTELQMGGNLFSGSIPPQLGLLSSLQIA------------------------- 642

Query: 728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787
                             +++S N+FSGEIP E+ NL  L  L+L++             
Sbjct: 643 ------------------MNLSYNDFSGEIPPEIGNLHLLMYLSLNN------------- 671

Query: 788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND 847
                      N LSG+IP +  NLS L   N S NNL G++P +   Q+   +SF GN 
Sbjct: 672 -----------NHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQIFQNMTLTSFLGNK 720

Query: 848 -LCGAPLSSC 856
            LCG  L SC
Sbjct: 721 GLCGGHLRSC 730

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	931
315436720	1020	verticillium wilt resistance-like protei	0.976	0.891	0.494	0.0
224072885	1024	predicted protein [Populus trichocarpa]	0.969	0.881	0.477	0.0
209970607	1045	M18S-3Ap [Malus floribunda]	0.981	0.874	0.441	0.0
255539443	1054	serine-threonine protein kinase, plant-t	0.948	0.837	0.438	0.0
255581850	1082	leucine-rich repeat receptor protein kin	0.977	0.841	0.438	0.0
209970603	1038	AM19-5p [Malus floribunda]	0.978	0.877	0.439	0.0
356561667	1018	PREDICTED: leucine-rich repeat receptor	0.976	0.892	0.431	0.0
350284759	980	receptor-like protein [Malus micromalus]	0.972	0.923	0.448	0.0
350284745	976	receptor-like protein [Malus x domestica	0.965	0.921	0.449	0.0
350284773	1041	receptor-like protein [Malus x domestica	0.979	0.876	0.439	0.0

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/986 (49%), Positives = 621/986 (62%), Gaps = 77/986 (7%)

Query: 10   TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFS 69
             SC E ER+ALLKLK DL DPS RLASW G N +CC W GV+C N TG+V++L L+NP  
Sbjct: 35   VSCPEVERQALLKLKQDLIDPSGRLASW-GTNLNCCNWSGVICDNLTGNVIQLRLRNPLD 93

Query: 70   PDD-----NEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLN 124
            P +     +EAY +    GKINPSLL+LKHL +LDLSG++F GIQIP++L S+  LRYLN
Sbjct: 94   PYNGFYIPSEAYAKMWFSGKINPSLLDLKHLRYLDLSGSNFGGIQIPEFLGSMHTLRYLN 153

Query: 125  LSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKAS 184
            LS A F G++P QLGNL+NL  LDL      ++AE + WLS L  L+HL +S VNLSKAS
Sbjct: 154  LSAAGFGGVVPPQLGNLTNLHVLDLHDFSSLVYAENLQWLSHLVKLKHLDLSSVNLSKAS 213

Query: 185  DSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSG----------------- 227
            D   V N+L SL E+ LS C+LH  PL +  NFSSL+ LDLS                  
Sbjct: 214  DWFQVTNTLPSLVEIHLSGCQLHRLPLQADVNFSSLSILDLSSNSFSNPLIPGWIFKLNS 273

Query: 228  --------NQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279
                    N FQGQ+P  L +L+SL++L+LY N F SA+  WL  L  LE L+L  N   
Sbjct: 274  LLSLDLSHNNFQGQLPHGLRSLSSLRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSNYFH 333

Query: 280  GDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIF 339
            G IS+ G  NLTS+  L LS ++EL G +P S G LC L    ++   LS+D+SEIL   
Sbjct: 334  GSISN-GFQNLTSLTTLDLS-DNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQAL 391

Query: 340  S--GCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
            S  GC+   LESLYL  C+IFGHLT+++  FK L  L LS N + GSIP SLG +A+L +
Sbjct: 392  SSPGCLLNGLESLYLDSCEIFGHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRT 451

Query: 398  LDLSNNKLNGT------------------------VSEIHFVNLTKLVSFLANANSLIFK 433
            LDLS N++NGT                        VSE+HF NLT+L  F A+ N L+ +
Sbjct: 452  LDLSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLE 511

Query: 434  INPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQY 493
             +P WVPPFQL V+ L S HLGP+FP WL+ Q+    LDIS T I D  P  FWN    Y
Sbjct: 512  ASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFVYLDISVTGIIDTFPNWFWNLSTIY 571

Query: 494  YYLNVSGNQIYGGVPKF--DSPSMPLIIT---------PSLLLGS---IFDLSNNALSGS 539
            + LN+S NQIYG +P     SP   L+           P   L S     DLS+N  SG 
Sbjct: 572  FSLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHFDGPLPCLSSKVNTLDLSSNLFSGP 631

Query: 540  IFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTL 599
            I +L+C        +E L L+ NH S  IPDCWMNWP + +++L NN+ +G +P S+G+L
Sbjct: 632  ISNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNWPNMVSVDLENNSLSGVIPSSMGSL 691

Query: 600  TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
              L+SL+LR N LSGV+P+S +N + L A+D+GEN  VG+IP WIGE+ S  +I+ L SN
Sbjct: 692  NLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENHFVGNIPGWIGEKLSDSIIISLGSN 751

Query: 660  KFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDN 719
            +F G  P  LC L+ L ILD+A+N+L GTIP+C  N SAMA   +S  S+ I YAF    
Sbjct: 752  RFQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMNLSAMAANQNS--SNPISYAFGHFG 809

Query: 720  KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 779
              +E   L++KG L+EY+S L LV S+D+S NN +GEIP  +T+L GL+ LNLS+N   G
Sbjct: 810  TSLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLAGEIPAGMTDLLGLRFLNLSNNQLKG 869

Query: 780  RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFD 839
            RIP NIG +R +ES+D S NQL G+IP SMS L+FL+YLNLS NNL G+IPSSTQLQSFD
Sbjct: 870  RIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTFLSYLNLSENNLTGKIPSSTQLQSFD 929

Query: 840  ASSFAGNDLCGAP-LSSCTEKNAIVTDDQNRIGNEEDGDEVDWT-LYVSMALGFVVGFWC 897
             SS+ GN LCG P L  C+      +D  N   NE DG EVDW   Y SMA GFVVGFW 
Sbjct: 930  ISSYDGNHLCGPPLLEICSTDATTSSDHNNNENNEGDGLEVDWLWFYASMAFGFVVGFWV 989

Query: 898  FIGPLLSNKRWRYKYFHFLDGIGDKF 923
             +GPLL NK WR++YF  L+ +  K 
Sbjct: 990  VMGPLLFNKSWRFRYFRILERLEYKI 1015

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/996 (47%), Positives = 634/996 (63%), Gaps = 93/996 (9%)

Query: 12   CIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPD 71
            C + ER+ALLK KHDL+DPS+RLASW G  GDCC W GV+C N TGHV+EL L++    D
Sbjct: 37   CSQIERDALLKFKHDLKDPSNRLASWAGFGGDCCTWRGVICDNVTGHVIELRLRSISFAD 96

Query: 72   ---------DNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRY 122
                       E Y + +L G+INPSL+ LKHL +LDL  NDF G+QIPK++  + +L++
Sbjct: 97   YLASSGASTQYEDYLKLILSGRINPSLVSLKHLRYLDLRNNDFGGVQIPKFIGLIGSLKH 156

Query: 123  LNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSK 182
            L+LS A F G IPH LGNLS+L YL+L   Y + + E ++WLS LS LE L +S V+L  
Sbjct: 157  LDLSDAGFAGTIPHGLGNLSDLNYLNLHDYYSQFNVENLNWLSQLSSLEFLDLSLVHLGN 216

Query: 183  ASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF---------------SSLTTLDL-- 225
              + L VIN+L SL EL LS+C+L   P +   NF               S+++ L+   
Sbjct: 217  VFNWLEVINTLPSLVELHLSYCQLPPVPPILYVNFSSLSILDLSSNYVDESAISMLNFPR 276

Query: 226  -------------SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
                         + N FQG IP+ L NLT LK LDL  N F+S++  WL     L++L+
Sbjct: 277  WVSHLKTLLSLNLANNNFQGPIPNGLQNLTLLKALDLSINHFSSSIPEWLYGFEHLKLLN 336

Query: 273  LEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG--GKIPTSFGKLCKLTSFSMASTKLSQ 330
            L  N LQG +SS  + N+TS+  L LS N EL   G IP SF KLC L + S+++ KL+Q
Sbjct: 337  LGSNNLQGVLSS-AIGNMTSLISLDLSLNHELKFEGGIPGSFKKLCNLRTLSLSNVKLNQ 395

Query: 331  DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
            DI+E+L +  GCV+ E+ESL L GC +FG LTN LG+F+ L +LGL +N + G IP++LG
Sbjct: 396  DIAEVLEVLLGCVSEEVESLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALG 455

Query: 391  QMANLESLDLSNNKLNGT------------------------VSEIHFVNLTKLVSFLAN 426
            ++ +L SL LS+NKLNGT                        VSE+HF NL  L +F A 
Sbjct: 456  ELVSLRSLVLSDNKLNGTLPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSAA 515

Query: 427  ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486
             N L  +++P+W+PP QL  ++LRS ++GP+FP W++  + L+ LDIS++ IS  IP  F
Sbjct: 516  GNQLNLRVSPDWIPP-QLVFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWF 574

Query: 487  WNSIFQYYYLNVSGNQIYGGVP---KFD-SPSMPLIITPSLL----LGSIF------DLS 532
            W   F+  YLN+S NQI G +P   K D + S PL+   S      L SIF      DLS
Sbjct: 575  WTMSFRMEYLNLSHNQIQGVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLS 634

Query: 533  NNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL 592
            NN+ SGS+ + +C   +  KN++ L L  N  S  IPDCW +W  L  + L NN  +G++
Sbjct: 635  NNSFSGSMLNFLCHKIDELKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNI 694

Query: 593  PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLM 652
            P SIG L+ L SL++RN+ LSG +P S KN + L  LDV ENELVGS+P WIG+RFS ++
Sbjct: 695  PDSIGALSLLESLHIRNSSLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMV 754

Query: 653  ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712
            +L +R+NKFHG  P +LC LASLQILD+A+N L  +IP C N  SAMAT + S      +
Sbjct: 755  VLNMRANKFHGRIPRELCNLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDSLGK---I 811

Query: 713  YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNL 772
            Y  SG +   ++  LVMKG +VEY++IL  VRSID+S N   GEIP EVT L  LQSLNL
Sbjct: 812  YLDSGSSTF-DNVLLVMKGKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNL 870

Query: 773  SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832
            S N  TGRIP+ IG +R +ES+DFS NQLSG+IPQSMS+L+FL++LNLS+N L G IPS 
Sbjct: 871  SQNSLTGRIPEGIGSLRYLESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSG 930

Query: 833  TQLQSFDASSFAGNDLCGAPLSS-CTEKNAIVTDDQNRIGNEEDGDEVD--WTLYVSMAL 889
            TQLQSF  SSF+GN+LCG PLS  C+  N    + +     EEDG+ +   W  YVSM L
Sbjct: 931  TQLQSFGPSSFSGNELCGPPLSKNCSVDNKFHVEHE----REEDGNGLKGRW-FYVSMVL 985

Query: 890  GFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVY 925
            GF+VGFW  +GPL+ N+RWRY Y+HFLD + D+  +
Sbjct: 986  GFIVGFWGVVGPLMFNRRWRYVYYHFLDRLRDQIWW 1021

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1028 (44%), Positives = 583/1028 (56%), Gaps = 114/1028 (11%)

Query: 4    ISLCNGTS-----CIESEREALLKLKHDLRDPSHRLASWIGDNG-DCCKWGGVLCGNFTG 57
            I L NG       C ESER+ALL  K DL DP+++LASW+ + G DCC W  V+C + TG
Sbjct: 24   IGLSNGNPGWPPLCKESERQALLMFKQDLNDPANQLASWVAEEGSDCCSWTRVVCDHMTG 83

Query: 58   HVLELNLQ----NPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKY 113
            H+ EL+L     +P+S D  +    S   GKINPSLL LKHL +LDLS N+FQG QIP +
Sbjct: 84   HIQELHLDGSYFHPYS-DPFDLDSDSCFSGKINPSLLSLKHLNYLDLSNNNFQGTQIPSF 142

Query: 114  LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY-FELHAETISWLSGLSLLEH 172
              S+ +L +LNL+ + F G+IPH+LGNLS+L+YL+LS    F L  E + W+SGLSLL+H
Sbjct: 143  FGSMTSLTHLNLAYSEFYGIIPHKLGNLSSLRYLNLSSSNGFNLKVENLQWISGLSLLKH 202

Query: 173  LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ--- 229
            L +SFVNLSKASD L V N L SL EL +S C+LH    L + NF+SL  LDLSGN+   
Sbjct: 203  LDLSFVNLSKASDWLQVTNMLPSLVELDMSNCQLHQITPLPTTNFTSLVVLDLSGNRFNS 262

Query: 230  ---------------------FQGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLSKLND 267
                                 FQG IPS   N+TSL+ +DL  N  +   +  WL    D
Sbjct: 263  LMPMWVFSIKNLVSLRLIYCWFQGPIPSISQNITSLREIDLSLNSISLDPIPKWLFNQKD 322

Query: 268  LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND------------------------- 302
            L  LSLE N+L G + S  + N+T ++ L L  ND                         
Sbjct: 323  L-ALSLESNQLTGQLPS-SIQNMTGLKVLNLGSNDFNSTIPEWLYSLNNLESLLLSSNAL 380

Query: 303  ----------------------ELGGKIPTSFGKLCKLTSFSMASTKLS-QDISEILGIF 339
                                   L GKIP S G LCKL    ++    + Q  S I    
Sbjct: 381  RGEISSSIGNMTSLVNLHLDNNLLEGKIPNSLGHLCKLKDLDLSKNHFTVQRPSVIFESL 440

Query: 340  SGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLD 399
            S C    ++SL LR   I G +   LG    L  L +S NQ +G+    +GQ+  L  LD
Sbjct: 441  SRCGPNGIKSLSLRYTNISGPIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLD 500

Query: 400  LSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 459
            +SNN L   VSE+ F NLTKL  F+AN NS   K + +WVPPFQL +L+L S HLGP +P
Sbjct: 501  ISNNSLEDAVSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWP 560

Query: 460  LWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI- 518
            +WL+ Q +L  L +S T IS  +P  FWN   +  YLN+S NQ+YG +    +  M ++ 
Sbjct: 561  MWLRTQTQLTRLSLSCTGISSTVPTWFWNLTSKVRYLNLSHNQLYGQIQNIVAGPMSVVD 620

Query: 519  -----------ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG 567
                       I P+ L     DLSN++ SGS+FH  C   +  + + FL L  N  S  
Sbjct: 621  LSSNHFTGALPIVPTSLFW--LDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGK 678

Query: 568  IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
            +PDCWM+W  L  LNL NNN TG++PMS+G L  L SL+LRNN L G +P S +N + L 
Sbjct: 679  VPDCWMSWQYLSFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLS 738

Query: 628  ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
             +D+GEN   GSIP WIG+  S L IL LRSNKF GD P ++C L SLQILD+A+N L G
Sbjct: 739  VVDLGENGFSGSIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSG 798

Query: 688  TIPRCINNFSAMATADSSDQSS--DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRS 745
             IPRC +N SAMA    S  +S   IL   S    +     LV KG  +EY  IL  V+ 
Sbjct: 799  MIPRCFHNLSAMADFSESRDASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVKF 858

Query: 746  IDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 805
            +D+S N   GEIP E+T+L  L+SLNLS+N FTGRIP  IG M  +ESLDFS NQL G+I
Sbjct: 859  MDLSCNFMYGEIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEI 918

Query: 806  PQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTD 865
            PQSM+NL+FL++LNLSNNNL G IP STQLQS D SSF GN+LCGAPL+    +N ++  
Sbjct: 919  PQSMTNLTFLSHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPP 978

Query: 866  DQNRIGNEEDGD------EVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGI 919
                   E DG       E +W  YVS+ +GF  GFW  +G LL N  W       L+ I
Sbjct: 979  PT----VEHDGGGGYNLLEDEW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI 1033

Query: 920  GDKFVYFV 927
              K  + +
Sbjct: 1034 VLKMYHVI 1041

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/1010 (43%), Positives = 586/1010 (58%), Gaps = 127/1010 (12%)

Query: 12   CIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSP- 70
            C + ER+ALL+ K DL+DPS+RL+SW+    DCCKW G++C N TGHV ELNL+NP    
Sbjct: 31   CNKIERQALLQSKQDLKDPSNRLSSWVAAELDCCKWAGIVCDNLTGHVKELNLRNPLDSL 90

Query: 71   -DDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
                E Y+R ML               +LDLS N+F+GI IP ++ SL +LRYL L +A 
Sbjct: 91   QVHRETYERFMLQAS-----------EYLDLSYNNFEGIPIPSFIGSLASLRYLGLYEAG 139

Query: 130  FTGMIPHQLGNLSNLQYLDLSG--VYF---ELHAETISWLSGLSLLEHLYISFVNLSKAS 184
            F G+IP+QLGNLS+L+ L + G  VY    +L+ + +SWLS L  L+HL +S V L  AS
Sbjct: 140  FEGLIPYQLGNLSSLRELGVQGACVYLGKAKLYVDDLSWLSRLPSLQHLDLSCVKLRAAS 199

Query: 185  DSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQF-------------- 230
            D LLV+N+L SL EL LS C L   P LS  NF++L+ L++S NQF              
Sbjct: 200  DWLLVMNALPSLSELHLSKCNLVVIPPLSDVNFTALSVLEISQNQFGSSIPNWIFTLTNL 259

Query: 231  ----------------------------------QGQIPSRLGNLTSLKHLDLYS-NQFN 255
                                               G IP+   NLT L++L+LY  N  +
Sbjct: 260  TSLDMSFCYFDGPIPNDLSHLTSLLSLDLSVNNLYGPIPTGFQNLTGLRNLNLYGVNLTS 319

Query: 256  SAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL 315
            S +  WL     LE L L    +QG+ISS  + NL ++  L L++  +L G +P + G L
Sbjct: 320  SRIPEWLYDFRQLESLDLSQTNVQGEISST-IQNLIALVNLKLAFT-KLEGTLPQTIGNL 377

Query: 316  CKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLG 375
            C L    ++  KL  D+S++   F+GC++  LE L   G    GH+ N +GQ   L  L 
Sbjct: 378  CNLQIIRLSGNKLGGDVSKVFESFAGCISQSLEEL---GNNFSGHIGNAIGQLGTLQHLD 434

Query: 376  LSNNQMDGSIPLSLGQMA------------------------NLESLDLSNNKLNGTVSE 411
            LS+N + GSIP S+G+++                        NL+++D+S+N L G VSE
Sbjct: 435  LSDNFISGSIPESIGRLSSLIWAFLPNNQLTGTLPVTFRNLSNLQTIDISHNLLEGVVSE 494

Query: 412  IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL 471
            +HF NLT L +F+A+ N L+ K++P WVPPF+L  L LR  +LGP+FP+WLQ Q     L
Sbjct: 495  VHFTNLTSLTAFVASHNHLVLKVSPAWVPPFRLKELGLRYWNLGPQFPIWLQSQDYFTYL 554

Query: 472  DISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI-ITPSLLLG---- 526
            D+S T ISD IP  FWN      YLN+S NQI G +P     S+ +I + P++ LG    
Sbjct: 555  DLSCTEISDSIPTWFWNLTSHIKYLNLSHNQIPGQLPS----SLSIISMLPTIYLGFNQF 610

Query: 527  -----------SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNW 575
                       S  DLSNN  SGSI   +C       ++  L L  N  S  IPDCWMNW
Sbjct: 611  KGPLPRFEADISALDLSNNFFSGSITRFLCYPTVVPYSLRILHLGENQLSGEIPDCWMNW 670

Query: 576  PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              L  + LGNNN TG +P SIG L +LRSL LR N LSG IP S  N + L  LD+  N+
Sbjct: 671  KSLTVIKLGNNNLTGKIPSSIGVLWNLRSLQLRKNSLSGEIPMSLGNCTRLLTLDLAAND 730

Query: 636  LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
             VG +P W+G  F  L+ L LRSN+  G+ P ++CRL+SLQILD A N+L GT+P+CI N
Sbjct: 731  FVGKVPDWLGGSFPELLALSLRSNQLTGEIPSEICRLSSLQILDFAGNNLSGTVPKCIAN 790

Query: 696  FSAMATADSSDQSSDILYAFSGDNKIV----EDTSLVMKGFLVEYNSILNLVRSIDISMN 751
             ++M T       + I Y+ +G   +V    E+  +V KG  VEY+SIL LV+S+D+S N
Sbjct: 791  LTSMTTVQP---RTKIFYSSTGYYSLVEIFLENAYVVTKGKEVEYDSILTLVKSMDLSSN 847

Query: 752  NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
              SGEIP E+T L GL SLNLS N  TG+IP+NIG M  +ESLD S NQ+SG IP SM+ 
Sbjct: 848  KISGEIPAELTALLGLMSLNLSGNDLTGQIPNNIGDMPVLESLDLSRNQISGNIPPSMAK 907

Query: 812  LSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND-LCGAPLS-SCTEKNAIVTDDQNR 869
              FLNYLNLS N+L+GEIPSSTQLQS DASSF GN+ LCG PL+ SCT       D    
Sbjct: 908  SHFLNYLNLSYNDLSGEIPSSTQLQSQDASSFVGNNRLCGPPLAISCTVAET-PQDTGKG 966

Query: 870  IGNEEDGDEVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGI 919
             GNE +G ++D   Y+ + +G VVGFW   G LL N+ WR+ YF FLD +
Sbjct: 967  SGNEGEGIKID-EFYLGLTIGSVVGFWGVFGSLLYNRSWRHAYFQFLDKV 1015

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581850|ref|XP_002531725.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis] gi|223528628|gb|EEF30645.1| leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/1059 (43%), Positives = 613/1059 (57%), Gaps = 149/1059 (14%)

Query: 9    GTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQ--- 65
               C + EREAL+K K +L+DPS RLASW G + +CC W GV+C NFTGHV EL+L+   
Sbjct: 32   AVGCNQIEREALMKFKDELQDPSKRLASW-GADAECCTWHGVICDNFTGHVTELHLKILS 90

Query: 66   --NPFSPDDNEAY-------QRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLAS 116
                +S  D   Y       +RS   GK++ SLL LKHL +LDLS NDF GIQIP +L S
Sbjct: 91   SEEYYSSSDALGYYFYEEYLERSSFRGKVSQSLLNLKHLNYLDLSNNDFGGIQIPPFLGS 150

Query: 117  LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG--VYFE--LHAETISWLSGLSLLEH 172
            + +LR+LNL  A F G IPHQLGNLSNLQYL+L+   +Y    ++ E++ WLS L  LE 
Sbjct: 151  MESLRHLNLYGAGFGGRIPHQLGNLSNLQYLNLNAKSIYTSAVIYIESLQWLSSLRSLEF 210

Query: 173  LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSL------------ 220
            L  S V+LSKA + L V+N+L SL EL LS  EL+  PLLS+ NFSSL            
Sbjct: 211  LDFSGVDLSKAFNWLDVLNTLPSLGELHLSGSELYPIPLLSNVNFSSLLTLNLSANNFVV 270

Query: 221  ----------TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVL----------- 259
                       TLDLS N F G IP  L N+T+L+ L L  +  NS++            
Sbjct: 271  PSWIFRLTTLATLDLSSNNFVGSIPIHLQNITTLRELYLSDSGLNSSIFNCLHGLAHLEL 330

Query: 260  --------------GWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG 305
                            +  L  L  L L  N L+  I S  + NLTS++ L LS N   G
Sbjct: 331  LHLASNYNLDGKIPSTIGNLTSLRSLDLSFNSLEEGIPS-AIGNLTSLKSLDLSRNSLEG 389

Query: 306  -----------------------GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGC 342
                                   G IPT F  LC L S  ++  KLSQ+I+E+  I SGC
Sbjct: 390  DIPSAIGNLASLSSLDLSRNSLEGGIPTWFRNLCNLRSLELSINKLSQEINEVFEILSGC 449

Query: 343  VAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN 402
            V+  LESL L   Q+ GHL+++L +FK L +L L++N + G IP +LG++  L SLDL N
Sbjct: 450  VSDILESLILPSSQLSGHLSDRLVKFKNLAYLDLNDNLISGPIPENLGELNFLISLDLGN 509

Query: 403  NKLNGT------------------------VSEIHFVNLTKLVSFLANANSLIFKINPNW 438
            NKLNG+                        +SEIHF NLT L +F A++N L  +++P+W
Sbjct: 510  NKLNGSLPIDFGMLSKLNYVDISNNSLEGEISEIHFANLTNLATFKASSNQLRLRVSPDW 569

Query: 439  VPPFQ-LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLN 497
             P FQ ++ + L+   +GP+FP W+   K L  LD+S++ IS  +P  F N   + Y +N
Sbjct: 570  FPAFQRVSTISLKCWKVGPQFPTWIHSLKYLAYLDLSNSTISSTLPTWFHNFSSRLYQIN 629

Query: 498  VSGNQIYGGVPKF---DSP-------------SMPLIITPSLLLGSIFDLSNNALSGSIF 541
            +S NQ++G +P     DS              SMP I +    L    DLSNN+ SGSI 
Sbjct: 630  LSHNQMHGTIPYLSIDDSDYSLIDLSSNNFGGSMPFISSNPFGL----DLSNNSFSGSIS 685

Query: 542  HLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS 601
              +C      + I  L L  N FS  IPDCWMNW     + L NN F+G++P SIGTL+ 
Sbjct: 686  SFLCYKP---RTINVLNLGENLFSGEIPDCWMNWNYTNVIRLSNNYFSGNIPESIGTLSE 742

Query: 602  LRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF 661
            L  LN+RNN LSG +P S K+ + L+ LD+  NEL G I TW+G+ F   +IL LR NKF
Sbjct: 743  LSVLNIRNNNLSGEMPISLKHCTSLQVLDLSGNELSGEITTWMGQHFQGTLILNLRGNKF 802

Query: 662  HGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI 721
            HG  P +LC + +L ILD A N+L GTIPRCINNF+A+ +  S  +   +L  +      
Sbjct: 803  HGFIPEELCGMTALVILDFANNNLNGTIPRCINNFTALLSGTSYLKDGKVLVDYGPTLTY 862

Query: 722  VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 781
             E + +   G LVEY++ L  VRS+D S N  SGEIP E+T+L+GL  LNLSHN  TGRI
Sbjct: 863  SESSLIERNGKLVEYSTTLGFVRSLDFSNNKLSGEIPEEMTSLRGLLFLNLSHNSLTGRI 922

Query: 782  PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDAS 841
            P+NIG M++++ LDFS NQLSG+IPQSMS+L+FLN LNLS+N L+G IPSSTQLQSFD+S
Sbjct: 923  PENIGAMKALQILDFSRNQLSGEIPQSMSSLTFLNNLNLSSNKLSGIIPSSTQLQSFDSS 982

Query: 842  SFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDG-----DEVDW-TLYVSMALGFVVGF 895
            SF+GN+LCG PL+     +    D + R    EDG     + +DW   YVS+A GFV+GF
Sbjct: 983  SFSGNNLCGPPLTQSCSGDGEKPDIEKR--TTEDGGNGSPEAIDWFYFYVSIAPGFVIGF 1040

Query: 896  WCFIGPLLSNKRWRYKYFHFLDGIGDK-----FVYFVRR 929
            W  +GPL  NKRWR  YF+FL+ + +K     +V+ V R
Sbjct: 1041 WVVVGPLAFNKRWRRLYFNFLEDLWNKIWVWFYVHIVNR 1079

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970603|gb|ACJ03064.1| AM19-5p [Malus floribunda]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1019 (43%), Positives = 583/1019 (57%), Gaps = 108/1019 (10%)

Query: 6    LCNGTS-----CIESEREALLKLKHDLRDPSHRLASWIGD-NGDCCKWGGVLCGNFTGHV 59
            LCNG       C +SER+ALL  K DL+DP++RL+SW+ + + DCC W GV+C + TGH+
Sbjct: 27   LCNGNPDWPPLCKDSERQALLMFKQDLKDPANRLSSWVAEEDSDCCSWTGVVCDHITGHI 86

Query: 60   LELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVN 119
             EL+L +     + + Y  S   GKINPSLL LKHL +LDLS NDF   QIP +  S+ +
Sbjct: 87   HELHLNS----SNFDWYINSFFGGKINPSLLSLKHLNYLDLSNNDFSSTQIPSFFGSMTS 142

Query: 120  LRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYISFV 178
            L +LNL  + F G+IPH LGNLS+L+YL+LS +Y   L  E + W++GLSLL+HL +S+V
Sbjct: 143  LTHLNLGTSEFDGIIPHNLGNLSSLRYLNLSSLYGPRLKVENLQWIAGLSLLKHLDLSYV 202

Query: 179  NLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGN---------- 228
            NLSKASD L V N L SL EL +  C+L     L + NF+SL  LDLS N          
Sbjct: 203  NLSKASDWLQVTNMLPSLVELIMLDCQLDQIAPLPTPNFTSLVVLDLSINFFNSLMPRWV 262

Query: 229  --------------QFQGQIPSRLGNLTSLKHLD-------------------------- 248
                           FQG IPS   N+TSL+ +D                          
Sbjct: 263  FSLKNLVSLHISDCGFQGPIPSISENITSLREIDLSFNYISLDLIPKWLFNQKFLKLSLE 322

Query: 249  ----------------------LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG 286
                                  L  N+FNS +  WL  LN+LE L L  N  +G+ISS  
Sbjct: 323  QNQLIGQLPSSIQNMTGLTTLNLEGNKFNSTIPEWLYNLNNLESLILSSNAFRGEISS-S 381

Query: 287  LDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS-QDISEILGIFSGCVAY 345
            + N+TS+  L L  N+ L GKIP S G LCKL    ++    + +  SE+    S C  +
Sbjct: 382  IGNMTSLVNLHLD-NNLLEGKIPNSLGHLCKLKVLDLSENHFTVRRPSEMFESLSRCGPH 440

Query: 346  ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
             ++SL LR   I G +   LG    L  L +S NQ DG+    +GQ+  L  LD+S N L
Sbjct: 441  GIKSLSLRYTNISGPIPMSLGNLSSLEKLDISINQFDGTFTEVIGQLKMLTDLDISYNSL 500

Query: 406  NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQ 465
             G VSE  F NLTKL  F+AN NS  +K + +W+PPFQL  L+L S HLGP +P+WLQ Q
Sbjct: 501  EGAVSEAFFSNLTKLKHFIANGNSFTWKTSRDWLPPFQLESLQLDSWHLGPEWPMWLQTQ 560

Query: 466  KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI-ITPSLL 524
             +L DL +S T IS  IP  FWN   Q  YLN+S NQ+YG +         L+ ++ +  
Sbjct: 561  TQLTDLSLSGTGISSAIPTWFWNLTSQVKYLNLSYNQLYGEIQNIFVAQYSLVDLSSNRF 620

Query: 525  LGSI---------FDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNW 575
             GS+          DLSN++ SGS+FH  C      K    L L  N  S  IPDCWMNW
Sbjct: 621  TGSLPIVPASLWWLDLSNSSFSGSVFHFFCDRTYELKTTYVLDLGNNLLSGKIPDCWMNW 680

Query: 576  PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              L  LNL NN+ TG++PMS+G L  LRSL+LRNN L G +P S +N + L  LD+G N 
Sbjct: 681  QELEVLNLENNHLTGNVPMSLGYLQRLRSLHLRNNHLDGELPHSLQNCTSLSILDLGGNG 740

Query: 636  LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
             VGSIP WIG+  S L IL LRSN+F GD P ++C L SLQILD+A N L GT  RC +N
Sbjct: 741  FVGSIPIWIGKSLSELQILNLRSNEFKGDIPYEVCYLKSLQILDLARNKLSGTTSRCFHN 800

Query: 696  FSAMAT-ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS 754
             SAMA  ++S   ++  +++ +G    +E+  LV KG  +EY+ IL  V+S+D+S N  S
Sbjct: 801  LSAMAILSESFSPTTFQMWSSAGSFSFLENAILVTKGREMEYSKILGFVKSMDLSCNFLS 860

Query: 755  GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 814
            GEIP  +T++  LQSLNLS+N FTGRIP  IG M  +ESLDFS N+L G IP SM+ L+F
Sbjct: 861  GEIPEGLTSVLALQSLNLSNNRFTGRIPSKIGNMVRLESLDFSMNELHGGIPPSMTTLTF 920

Query: 815  LNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEE 874
            L+YLNLS NNL G IP STQLQSF+ SSF GN+LCG PL++    N +    +     E+
Sbjct: 921  LSYLNLSYNNLTGRIPESTQLQSFNQSSFVGNELCGRPLNNNCSANGVKPPPK----VEQ 976

Query: 875  DGD------EVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYFV 927
            DG       E  W  YVS+ LGF  GFW  +G LL N  W       L+ I  K  + +
Sbjct: 977  DGGGGYYLLEDKW-FYVSLGLGFFTGFWIVLGSLLVNMPWSMLLSGLLNRIVLKLYHVI 1034

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561667|ref|XP_003549101.1| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Glycine max]

 Score =  715 bits (1845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/1002 (43%), Positives = 589/1002 (58%), Gaps = 93/1002 (9%)

Query: 7    CNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQN 66
            C  + CI SERE LLK+K++L DPS+RL SW  ++ +CC W GVLC N T HVL+L+L  
Sbjct: 21   CRESVCIPSERETLLKIKNNLNDPSNRLWSWNHNHTNCCHWYGVLCHNVTSHVLQLHLNT 80

Query: 67   PFSPD--------DNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDF--QGIQIPKYLAS 116
             FS          D EAY++S   G+I+P L +LKHL HL+LSGN F   G+ IP +L +
Sbjct: 81   TFSAAFYDGYYHFDEEAYEKSQFGGEISPCLADLKHLNHLNLSGNYFLGAGMAIPSFLGT 140

Query: 117  LVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAETISWLSGLSLLEHLYI 175
            + +L +L+LS   F G IP Q+GNLSNL YLDL G   E + AE + W+S +  LE+L++
Sbjct: 141  MTSLTHLDLSLTGFMGKIPSQIGNLSNLVYLDLGGYSVEPMLAENVEWVSSMWKLEYLHL 200

Query: 176  SFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLS--------- 226
            S+ NLSKA   L  + SL SL  L LS C L H+   S  NFSSL TL LS         
Sbjct: 201  SYANLSKAFHWLHTLQSLPSLTHLDLSGCTLPHYNEPSLLNFSSLQTLHLSFTSYSPAIS 260

Query: 227  ------------------GNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
                              GN+ QG IP  + NLT L++L L  N F+S++   L  L+ L
Sbjct: 261  FVPKWIFKLKKLVSLQLWGNEIQGPIPGGIRNLTLLQNLYLSGNSFSSSIPDCLYGLHRL 320

Query: 269  EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
            + L+L DN L G IS   L NLTS+ +L LS N +L G IPTS G LC L     ++ KL
Sbjct: 321  KFLNLGDNHLHGTISD-ALGNLTSLVELDLSGN-QLEGNIPTSLGNLCNLRDIDFSNLKL 378

Query: 329  SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
            +Q ++E+L I + C+++ L  L ++  ++ GHLT+ +G FK +  L  SNN + G++P S
Sbjct: 379  NQQVNELLEILAPCISHGLTRLAVQSSRLSGHLTDYIGAFKNIERLDFSNNSIGGALPRS 438

Query: 389  LGQMANLESLDLSNNKLNG------------------------TVSEIHFVNLTKLVSFL 424
             G+ ++L  LDLS NK +G                         V E    NLT L+   
Sbjct: 439  FGKHSSLRYLDLSTNKFSGNPFESLGSLSKLSSLYIGGNLFQTVVKEDDLANLTSLMEIH 498

Query: 425  ANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPR 484
            A+ N+   K+ PNW+P FQL  L++RS  LGP FP W++ Q KL  LD+S+  I D IP 
Sbjct: 499  ASGNNFTLKVGPNWLPNFQLFHLDVRSWQLGPSFPSWIKSQNKLEYLDMSNAGIIDSIPT 558

Query: 485  AFWNSIFQYYYLNVSGNQIYG--GVPKFDSPSMPLI-ITPSLLLGSI---------FDLS 532
              W ++ Q  YLN+S N I+G  G    +  S+P+I ++ + L G +          DLS
Sbjct: 559  QMWEALPQVLYLNLSHNHIHGESGTTLKNPISIPVIDLSSNHLCGKLPYLSSDVSQLDLS 618

Query: 533  NNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL 592
            +N+ S S+   +C  ++    ++FL L++N+ S  IPDCWMNW  L  +NL +N+F G+L
Sbjct: 619  SNSFSESMNDFLCNDQDEPMQLQFLNLASNNLSGEIPDCWMNWTFLGNVNLQSNHFVGNL 678

Query: 593  PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLM 652
            P S+G+L  L+SL +RNN  SG+ P+S K  + L +LD+GEN L G IPTW+GE+  ++ 
Sbjct: 679  PQSMGSLAELQSLQIRNNTFSGIFPSSLKKNNQLISLDLGENNLSGCIPTWVGEKLLKVK 738

Query: 653  ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATAD--------S 704
            IL LRSN F G  P ++C+++ LQ+LD+A N+L G IP C  N SAM   +        S
Sbjct: 739  ILRLRSNSFAGHIPNEICQMSHLQVLDLAENNLSGNIPSCFCNLSAMTLKNQSTYPRIYS 798

Query: 705  SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL 764
             +Q +   Y+F   N  +    L +KG   EY + L LV  ID+S N   G+IP E+T L
Sbjct: 799  EEQYAGSSYSF---NYGIVSVLLWLKGRGDEYKNFLGLVTDIDLSSNKLLGKIPREITYL 855

Query: 765  QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN 824
             GL  LNLSHN   G IP  IG MRSI+++DFS NQLSG+IP ++SNLSFL+ L+LS N+
Sbjct: 856  NGLNFLNLSHNQLIGHIPQGIGNMRSIQTIDFSRNQLSGEIPPTISNLSFLSMLDLSYNH 915

Query: 825  LNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLY 884
            L G IP+ TQLQ+FDASSF GN+LCG PL      N      +       DG  V+W  +
Sbjct: 916  LKGNIPTGTQLQTFDASSFIGNNLCGPPLPINCSSNGKTHSYEG-----SDGHGVNW-FF 969

Query: 885  VSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGIGDKFVYF 926
            VS  +GFVVGFW  I PLL  + WRY YFHFLD +  K   F
Sbjct: 970  VSATIGFVVGFWIVIAPLLICRSWRYAYFHFLDHVWFKLQSF 1011

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  714 bits (1843), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/972 (44%), Positives = 568/972 (58%), Gaps = 67/972 (6%)

Query: 4   ISLCNGTS-----CIESEREALLKLKHDLRDPSHRLASWIGDNG-DCCKWGGVLCGNFTG 57
           I LCNG       C ESER ALL  K DL+DP+++LASW+ + G DCC W  V+C + TG
Sbjct: 24  IGLCNGNPSWPPLCKESERRALLMFKQDLKDPANQLASWVAEEGSDCCSWTRVVCDHMTG 83

Query: 58  HVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASL 117
           H+ EL+L    S  D ++Y      GKINPSLL LKHL  LDLS NDF   +IP +  S+
Sbjct: 84  HIHELHLNGSDSDLDPDSY----FGGKINPSLLSLKHLNFLDLSYNDFYTTRIPSFFGSM 139

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAETISWLSGLSLLEHLYIS 176
            +L +LNL+ + F G+IPH+LGNLS+L YL+LS +Y   L  E + W+SGLSLL+HL +S
Sbjct: 140 TSLTHLNLAYSWFDGIIPHKLGNLSSLHYLNLSTLYRSNLKVENLQWISGLSLLKHLDLS 199

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQF------ 230
            VNL KASD L V N L SL EL +S+C LH  P L + NF+SL  LDLSGN F      
Sbjct: 200 NVNLGKASDWLQVTNMLPSLVELHMSYCHLHQIPPLPTPNFTSLVVLDLSGNSFNSLMSR 259

Query: 231 ------------------QGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLSKLNDLEVL 271
                             QG IPS   N+TSL+ +DL SN  +   +  WL     LE L
Sbjct: 260 WVFSLKNLISIHLSDCGFQGPIPSISQNITSLREIDLSSNYISLDLIPKWLFNQKFLE-L 318

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
           SLE N+L G + S  + N+T +  L L WN E    IP     L  L S  ++   L  +
Sbjct: 319 SLEANQLTGQLPS-SIQNMTGLIALNLGWN-EFNSTIPEWLYSLNNLESLHLSHNALRGE 376

Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
           IS  +G         L  L L    I G +   LG    L  L +S NQ +G+    + Q
Sbjct: 377 ISSSIGNLK-----SLRHLDLSNNSISGPIPMSLGNLSSLEKLDISVNQFNGTFTEVIDQ 431

Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
           +  L  LD+S N L G VSE+ F NL KL  F+A  NS   K + +WVPPFQL +L+L S
Sbjct: 432 LKMLTDLDISYNSLEGVVSEVSFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILQLDS 491

Query: 452 CHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFD 511
            HLGP++P+WL+ Q +L +L +S T IS  IP  FWN   Q  YLN+S NQ+YG +    
Sbjct: 492 WHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIV 551

Query: 512 S-PSMPLIITPSLLLGSI---------FDLSNNALSGSIFHLICQGENFSKNIEFLKLST 561
           + PS  + ++ +   G++          DLS ++ S S+FH  C   +  K +  L L  
Sbjct: 552 AGPSSVVDLSSNQFTGALPIVPTSLFFLDLSRSSFSESVFHFFCDRPDEPKQLSVLNLGN 611

Query: 562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK 621
           N  +  +PDCWM+W  LR LNL NNN TG++PMS+G L  L SL+LRNN L G +P S +
Sbjct: 612 NLLTGKVPDCWMSWQHLRFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHSLQ 671

Query: 622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVA 681
           N + L  +D+ EN   GSIP WIG+  S L +L LRSNKF GD P ++C L SLQILD+A
Sbjct: 672 NCTWLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLA 731

Query: 682 YNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILN 741
           +N L G IPRC +N SA+  AD S+      Y  +  +++ E+  LV KG  +EY+ IL 
Sbjct: 732 HNKLSGMIPRCFHNLSAL--ADFSESFYPTSYWGTNWSELSENAILVTKGIEMEYSRILG 789

Query: 742 LVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801
            V+ +D+S N   GEIP E+T L  LQSLNLS+N FTGRIP NIG M  +E+LDFS NQL
Sbjct: 790 FVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSNIGNMAWLETLDFSMNQL 849

Query: 802 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNA 861
            G+IP SM+NL+FL++LNLS NNL G IP STQLQS D SSF GN LCGAPL+     N 
Sbjct: 850 DGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNKLCGAPLNKNCSTNG 909

Query: 862 IVTDDQNRIGNEEDGD------EVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHF 915
           ++         E+DG       E +W  YVS+ +GF  GFW  +G LL N  W       
Sbjct: 910 VIPPPT----VEQDGGGGYRLLEDEW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQL 964

Query: 916 LDGIGDKFVYFV 927
           L+ I  K  + +
Sbjct: 965 LNRIVLKMYHVI 976

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284745|gb|AEQ27744.1| receptor-like protein [Malus x domestica]

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/974 (44%), Positives = 575/974 (59%), Gaps = 75/974 (7%)

Query: 4   ISLCNGTS-----CIESEREALLKLKHDLRDPSHRLASWIGD-NGDCCKWGGVLCGNFTG 57
           I LCNG       C ESER++LL  K DL+DP++RLASW+ + + DCC W GV+C + TG
Sbjct: 24  IGLCNGNPSWPPLCKESERQSLLMFKQDLKDPANRLASWVAEEDSDCCSWTGVVCDHMTG 83

Query: 58  HVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASL 117
           H+ EL+L N      +E Y  S   GKINPSLL LKHL +LDLS N+FQG QIP +  S+
Sbjct: 84  HIRELHLNN------SEPYLESSFGGKINPSLLGLKHLNYLDLSNNNFQGTQIPSFFGSM 137

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
            +L +LNL  + F G+IPH+LGNL++L+YL+LS +Y +L  E + W+SGLSLL+HL +S+
Sbjct: 138 TSLTHLNLGHSEFGGVIPHKLGNLTSLRYLNLSRLY-DLKVENLQWISGLSLLKHLDLSW 196

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQF------- 230
           VNLSKASD L V N L SL EL +S+C+LH    L + NF+SL  LDLS N F       
Sbjct: 197 VNLSKASDWLQVTNMLPSLVELDMSYCQLHQITPLPTTNFTSLVVLDLSFNSFNSLMLRW 256

Query: 231 -----------------QGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLSKLNDLEVLS 272
                            QG IPS   N+TSL+ +DL  N  +   +  WL    +LE LS
Sbjct: 257 VFSLKNLVSLHLSFCGFQGLIPSISQNITSLREIDLSHNSMSLDPIPKWLFNQKNLE-LS 315

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDI 332
           LE N+L G + S  + N+T ++ L L  N+     IP     L  L S  ++      +I
Sbjct: 316 LEANQLTGQLPS-SIQNMTGLKVLNLEVNN-FNSTIPEWLYSLNNLESLLLSYNYFCGEI 373

Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
           S  +G       ++L S       I G +   LG    L  L +S NQ +G+    +GQ+
Sbjct: 374 SSSIGNLKSLRHFDLSS-----NSISGPIPMSLGNLSSLEKLDISGNQFNGTFIEVIGQL 428

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
             L  LD+S N L G +SE+ F NLTKL  F+AN NS   K + +WVPPFQL +L+L S 
Sbjct: 429 KMLMDLDISYNSLEGAMSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSW 488

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYG------G 506
           HLGP++P+WL+ Q +L +L +S T IS  IP  FWN   Q  YLN+S NQ+YG       
Sbjct: 489 HLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLYGQIQNIVA 548

Query: 507 VPKFDSPSM-------PLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 559
           VP F +  +        L I P+ L+    DLSN++ SGS+FH  C   +  K    L L
Sbjct: 549 VP-FSTVDLSSNQFTGALPIVPTSLMW--LDLSNSSFSGSVFHFFCDRPDEPKQHYVLHL 605

Query: 560 STNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS 619
             N  +  +PDCWM+W  L  LNL NNN TG++PMS+G L  L SL+LRNN L G +P S
Sbjct: 606 GNNFLTGKVPDCWMSWSSLEFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYGELPHS 665

Query: 620 FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILD 679
            +N + L  +D+ EN   GSIPTWIG   S L +LILRSNKF GD P ++C L SLQILD
Sbjct: 666 LQNCTWLSVVDLSENGFSGSIPTWIGN--SLLNVLILRSNKFEGDIPNEVCYLTSLQILD 723

Query: 680 VAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSI 739
           +A+N L G IPRC ++ SAMA    S   +      +   ++ ++  LV KG  +EY+ I
Sbjct: 724 LAHNKLSGMIPRCFHDLSAMADFSESFSPTRGFGTSAHMFELSDNAILVKKGIEMEYSKI 783

Query: 740 LNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 799
           L  V+ +D+S N   GEIP E+T L  LQSLNLS+N FTGRIP  IG M  +ESLDFS N
Sbjct: 784 LGFVKGMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSKIGNMAWLESLDFSMN 843

Query: 800 QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEK 859
           QL G+IPQSM+NL+FL++LNLS NNL G IP STQLQ  D SSF GN+LCGAPL      
Sbjct: 844 QLDGEIPQSMTNLTFLSHLNLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKHCSA 903

Query: 860 NAIVTDDQNRIGNEEDGD------EVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYF 913
           N ++         E+DG       E +W  YVS+ +GF  GFW  +G LL N  W     
Sbjct: 904 NGVIPPAT----VEQDGGDGYRLLEDEW-FYVSLGVGFFTGFWIVLGSLLINMPWSILLS 958

Query: 914 HFLDGIGDKFVYFV 927
             L+ I  K  + +
Sbjct: 959 QLLNRIVLKMYHVI 972

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284773|gb|AEQ27758.1| receptor-like protein [Malus x domestica]

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1028 (43%), Positives = 582/1028 (56%), Gaps = 116/1028 (11%)

Query: 3    NISLCNGTS-----CIESEREALLKLKHDLRDPSHRLASWIGDNG-DCCKWGGVLCGNFT 56
            +I LCNG       C ESER+ALL  K DL+DP+++LASW+ + G DCC W  V CG+ T
Sbjct: 23   SIGLCNGNPGWPPLCKESERQALLLFKQDLKDPANQLASWVAEEGSDCCSWTRVFCGHMT 82

Query: 57   GHVLELNLQ----NPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPK 112
            GH+ EL+L     + FS D  +    S   GKINPSLL LKHL  LDLS N+F   QIP 
Sbjct: 83   GHIQELHLNGFCFHSFS-DSFDLDFDSCFSGKINPSLLNLKHLNFLDLSNNNFNRTQIPS 141

Query: 113  YLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF--ELHAETISWLSGLSLL 170
            +  S+ +L +LNL+ + F G+IPH+LGNLS+L+YL+LS  +F   L  E + W+S LSLL
Sbjct: 142  FFGSMTSLTHLNLANSEFYGIIPHKLGNLSSLRYLNLSSGFFGPHLKVENLQWISSLSLL 201

Query: 171  EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS----------------- 213
            +HL +S VNLSKASD L V N L SL EL +S CEL+  P L                  
Sbjct: 202  KHLDLSSVNLSKASDWLQVTNMLPSLVELIMSDCELYQIPPLPTPNFTSLVVLDLSVNFF 261

Query: 214  -------------------------------SANFSSLTTLDLSGNQFQ----------- 231
                                           S N +SL  +DLSGN              
Sbjct: 262  NSLMPRWVFSLKNLVSLRLSACWFQGPIPSISQNITSLREIDLSGNYLSLDPIPKWLFNQ 321

Query: 232  -------------GQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
                         GQ+PS + N+T L  LDL  N FNS +  WL  L +LE L L  + L
Sbjct: 322  KDLALSLEFNNHTGQLPSSIQNMTGLIALDLSFNDFNSTIPEWLYSLTNLESLLLSSSVL 381

Query: 279  QGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTK-LSQDISEILG 337
             G+ISS  + N+TS+  L L  N +L GKIP S G LCKL    ++    + +  SEI  
Sbjct: 382  HGEISS-SIGNMTSLVNLHLDGN-QLEGKIPNSLGHLCKLKVLDLSENHFMVRRPSEIFE 439

Query: 338  IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
              S C    ++SL LR   I GH+   LG    L  L +S NQ +G+    +GQ+  L  
Sbjct: 440  SLSRCGPDGIKSLSLRYTNISGHIPMSLGNLSSLEKLDISLNQFNGTFTEVIGQLKMLTD 499

Query: 398  LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457
            LD+S N L G VSE+ F NLTKL  F+A  NS   K + +WVPPFQL +L+L S HLGP 
Sbjct: 500  LDISYNSLEGVVSEVSFSNLTKLKHFIAKGNSFTLKTSRDWVPPFQLEILQLDSWHLGPE 559

Query: 458  FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVP----KFDSP 513
            +P+WL+ Q +L +L +S T IS  IP  FWN  FQ  YLN+S NQ+YG +      +DS 
Sbjct: 560  WPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTFQLDYLNLSHNQLYGQIQNIFGAYDST 619

Query: 514  --------SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565
                    +  L I P+ L     DLSN++ SGS+FH  C   +  + + FL L  N  +
Sbjct: 620  VDLSSNQFTGALPIVPTSL--DWLDLSNSSFSGSVFHFFCDRPDEPRKLHFLLLGNNSLT 677

Query: 566  EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625
              +PDCWM+W  LR LNL NN+ TG++PMS+G L  L SL+LRNN L G +P S +N S 
Sbjct: 678  GKVPDCWMSWQSLRFLNLENNHLTGNVPMSMGYLVWLGSLHLRNNHLYGELPHSLQNTS- 736

Query: 626  LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
            L  LD+  N   GSIP WIG+  S L +LILRSNKF GD P ++C L SLQILD+A+N L
Sbjct: 737  LSVLDLSGNGFSGSIPIWIGKSLSELHVLILRSNKFEGDIPNEVCYLTSLQILDLAHNKL 796

Query: 686  LGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRS 745
             G IPRC +N SA+A  D S   S   +    ++ + E+  LV KG  +EY  IL  V+ 
Sbjct: 797  SGMIPRCFHNLSALA--DFSQIFSTTSFWGVEEDGLTENAILVTKGIEMEYTKILGFVKG 854

Query: 746  IDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 805
            +D+S N   GEIP E+T L  LQSLNLS+N FTG IP  IG M  +ESLDFS NQL G+I
Sbjct: 855  MDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGGIPSKIGSMAQLESLDFSMNQLDGEI 914

Query: 806  PQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCTEKNAIVTD 865
            P SM+ L+FL++LNLS NNL G IP STQLQS D SSF GN+LCGAPL+     N ++  
Sbjct: 915  PPSMTKLTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSTNGVIPP 974

Query: 866  DQNRIGNEEDGD------EVDWTLYVSMALGFVVGFWCFIGPLLSNKRWRYKYFHFLDGI 919
                   E+DG       E +W  YVS+ +GF  GFW  +G LL N  W       L+ I
Sbjct: 975  PT----VEQDGGGGYRLLEDEW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI 1029

Query: 920  GDKFVYFV 927
              K  + +
Sbjct: 1030 VLKMYHVI 1037

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	931
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.896	0.922	0.330	7.6e-96
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.912	0.888	0.302	2.4e-83
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.830	0.819	0.317	2e-79
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.905	0.942	0.305	2.1e-77
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.777	0.827	0.312	5.7e-75
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.847	0.802	0.294	8.6e-72
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.746	0.856	0.313	2.1e-68
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.734	0.788	0.312	6.5e-67
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.818	0.855	0.291	1.1e-64
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.821	0.885	0.293	2e-63

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
 Identities = 299/904 (33%), Positives = 440/904 (48%)

Query:     2 INISLCNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLE 61
             +N        CI +ER+ALL  +  L D S RL SW G   DCC W GVLC   T HV++
Sbjct:    23 LNYGSAASPKCISTERQALLTFRAALTDLSSRLFSWSGP--DCCNWPGVLCDARTSHVVK 80

Query:    62 LNLQNPFSPDDNEAYQRSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKYLASLVNLR 121
             ++L+NP     ++ Y+R  L GKI+PS            S NDF  ++IP+++  +V+LR
Sbjct:    81 IDLRNPSQDVRSDEYKRGSLRGKIHPSLTQLKFLSYLDLSSNDFNELEIPEFIGQIVSLR 140

Query:   122 YLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF------ELHAETISWLSGLSL-LEHLY 174
             YLNLS + F+G IP  LGNLS L+ LDL    F       L A  + WLS LS  L++L 
Sbjct:   141 YLNLSSSSFSGEIPTSLGNLSKLESLDLYAESFGDSGTLSLRASNLRWLSSLSSSLKYLN 200

Query:   175 ISFVNLSKASDSLLV-INSLHSLKELKLSFCELHHFP--LLSSANFSSLTTLDLSGNQFQ 231
             + +VNLS A ++ L   + + +LKEL L   EL + P  L SSA+   L  LDLS N   
Sbjct:   201 MGYVNLSGAGETWLQDFSRISALKELHLFNSELKNLPPTLSSSADLKLLEVLDLSENSLN 260

Query:   232 GQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN-RLQGDISSLGLDNL 290
               IP+ L  LT+L+ L L  +    ++      L  LE L L +N  LQG+I S+ L +L
Sbjct:   261 SPIPNWLFGLTNLRKLFLRWDFLQGSIPTGFKNLKLLETLDLSNNLALQGEIPSV-LGDL 319

Query:   291 TSIQKLLLSWNDELGGKI-----PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAY 345
               ++ L LS N EL G+I       S  K   L    ++S KL+  + E LG        
Sbjct:   320 PQLKFLDLSAN-ELNGQIHGFLDAFSRNKGNSLVFLDLSSNKLAGTLPESLGSLRN---- 374

Query:   346 ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
              L++L L      G + + +G    L  L LSNN M+G+I  SLGQ+A L  L+L  N  
Sbjct:   375 -LQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAELVDLNLMANTW 433

Query:   406 NGTVSEIHFVNLTKLVSFLANAN---SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 462
              G + + HFVNL  L S         SL+FK+   W+PPF+L ++++ +C +G  FP+WL
Sbjct:   434 GGVLQKSHFVNLRSLKSIRLTTEPYRSLVFKLPSTWIPPFRLELIQIENCRIG-LFPMWL 492

Query:   463 QLQKKLNDLDISSTRISDKIPRAFWNSIF-QYYYLNVSGNQIYGGVPKFDSPSMPLIITP 521
             Q+Q KLN + + +T I D IP ++++ I  +  YL ++ N+I G +P+        +  P
Sbjct:   493 QVQTKLNFVTLRNTGIEDTIPDSWFSGISSKVTYLILANNRIKGRLPQ-------KLAFP 545

Query:   522 SLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRT 580
              L   +  DLS+N   G+ F L      +S N   L+L  N+FS  +P +  +  PR+  
Sbjct:   546 KL---NTIDLSSNNFEGT-FPL------WSTNATELRLYENNFSGSLPQNIDVLMPRMEK 595

Query:   581 LNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSI 640
             + L +N+FTG++P S+                 G  P  +    +L  +DV EN L G I
Sbjct:   596 IYLFSNSFTGNIPSSLCEVSGLQILSLRKNHFSGSFPKCWHRQFMLWGIDVSENNLSGEI 655

Query:   641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA-- 698
             P  +G     L +L+L  N   G  P  L   + L  +D+  N L G +P  +   S+  
Sbjct:   656 PESLG-MLPSLSVLLLNQNSLEGKIPESLRNCSGLTNIDLGGNKLTGKLPSWVGKLSSLF 714

Query:   699 MATADSSDQSSDILYAFSG-DN-KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN--FS 754
             M    S+  +  I        N +I++ +   + G + +   I NL  +I    NN  F 
Sbjct:   715 MLRLQSNSFTGQIPDDLCNVPNLRILDLSGNKISGPIPK--CISNLT-AIARGTNNEVFQ 771

Query:   755 GEIPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMX 810
               + + VT  +  +    S+NLS N  +G IP  I  +  +  L+ S N ++G IP+ + 
Sbjct:   772 NLVFI-VTRAREYEAIANSINLSGNNISGEIPREILGLLYLRILNLSRNSMAGSIPEKIS 830

Query:   811 XXXXXXXXXXXXXXXXGEIPSSTQLQSFDA-SSFAGNDLCGAPLSSCTEKNAIVTDDQNR 869
                             G IP     QSF A SS    +L    L     K     D    
Sbjct:   831 ELSRLETLDLSKNKFSGAIP-----QSFAAISSLQRLNLSFNKLEGSIPKLLKFQDPSIY 885

Query:   870 IGNE 873
             IGNE
Sbjct:   886 IGNE 889

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 283/937 (30%), Positives = 439/937 (46%)

Query:    12 CIESEREALLKLKHDLR----DPSH----------RLASWIGDNGDCCKWGGVLCGNFTG 57
             C   +R+ALL  K++       P H          +  SW G+N DCC W GV C   +G
Sbjct:    37 CRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSW-GNNSDCCNWEGVTCNAKSG 95

Query:    58 HVLELNLQNPFSPDDNEAYQRSMLVGKI--NPSXXXXXXXXXXXXSGNDFQGIQIPKYLA 115
              V+EL+L              S L G+   N S            S NDF+G QI   + 
Sbjct:    96 EVIELDLSC------------SSLHGRFHSNSSIRNLHFLTTLDLSFNDFKG-QITSSIE 142

Query:   116 SLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHA-ETISWLSGLSLLEHLY 174
             +L +L YL+LS   F+G I + +GNLS L YL+L    F   A  +I  LS L+ L+  Y
Sbjct:   143 NLSHLTYLDLSSNHFSGQILNSIGNLSRLTYLNLFDNQFSGQAPSSICNLSHLTFLDLSY 202

Query:   175 ISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSS-ANFSSLTTLDLSGNQFQGQ 233
               F     +S     I  L  L  L L F       + SS  N S+LTTLDLS N F GQ
Sbjct:   203 NRFFGQFPSS-----IGGLSHLTTLSL-FSNKFSGQIPSSIGNLSNLTTLDLSNNNFSGQ 256

Query:   234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
             IPS +GNL+ L  L L+SN F   +      LN L  L ++DN+L G+  ++ L NLT +
Sbjct:   257 IPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDDNKLSGNFPNVLL-NLTGL 315

Query:   294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLR 353
               L LS N++  G +P +   L  L  F  +    +      L          L    L+
Sbjct:   316 SLLSLS-NNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLFTIPSLTYIRLNGNQLK 374

Query:   354 GCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIH 413
             G   FG++++    ++    L + NN   G IP S+ ++  L  LD+S+    G V    
Sbjct:   375 GTLEFGNISSPSNLYE----LDIGNNNFIGPIPSSISKLVKLFRLDISHLNTQGPVDFSI 430

Query:   414 FVNLTKLVSF-LANANSLIFKINPNWVPPF--QLTVLELRSCHLGP--RFPLWLQLQKKL 468
             F +L  L+   +++ N+   +I+ N+   +  +L +L+L   H+    +  +     + +
Sbjct:   431 FSHLKSLLDLNISHLNTTT-RIDLNYFLSYFKRLLLLDLSGNHVSATNKSSVSDPPSQLI 489

Query:   469 NDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI----ITPSLL 524
               L +S   I++  P  F  +  +  +L++S N+I G VP +    +P++    ++ + L
Sbjct:   490 QSLYLSGCGITE-FPE-FVRTQHELGFLDISNNKIKGQVPDW-LWRLPILYYVNLSNNTL 546

Query:   525 LG---------SIFDL--SNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWM 573
             +G         S+  L  SNN   G I   IC G    +++  L LS N+F+  IP C  
Sbjct:   547 IGFQRPSKPEPSLLYLLGSNNNFIGKIPSFIC-G---LRSLNTLDLSDNNFNGSIPRCMG 602

Query:   574 NWPR-LRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVG 632
             +    L  LNL  N+ +G LP  I                 G +P S   FS LE L+V 
Sbjct:   603 HLKSTLSVLNLRQNHLSGGLPKQI--FEILRSLDVGHNQLVGKLPRSLSFFSTLEVLNVE 660

Query:   633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP-R 691
              N +  + P W+     +L +L+LRSN FHG  PI       L+I+D+++N   GT+P  
Sbjct:   661 SNRINDTFPFWLSS-LPKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNRFNGTLPTE 717

Query:   692 CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVM-KGFLVEYNSILNLVRSIDISM 750
                 +SAM++   ++  S+  Y  SG     +D+ ++M KG  +E   IL +  ++D S 
Sbjct:   718 YFVKWSAMSSLGKNEDQSNEKYMGSG--LYYQDSMVLMNKGVAMELVRILTIYTAVDFSG 775

Query:   751 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMX 810
             N F GEIP  +  L+ L  L+LS+N F+G +P ++G + ++ESLD S N+L+G+IPQ + 
Sbjct:   776 NRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDVSKNKLTGEIPQELG 835

Query:   811 XXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFAGN-DLCGAPLSS-CTEKNAIVTDDQN 868
                             G +P   Q  + + S+F  N  L G+ L   C + +   +  Q 
Sbjct:   836 DLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEEVCRDIHTPASHQQF 895

Query:   869 RIGNEEDGDEVDWTLYVSMALGFVVG--FWCFIGPLL 903
                  E+ DE D   +++ A+GF  G  F    G +L
Sbjct:   896 ETPETEEEDE-DLISWIAAAIGFGPGIAFGLMFGYIL 931

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 268/845 (31%), Positives = 397/845 (46%)

Query:   114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
             L  L NLR L+L+Q    G IP  +GNLS+L  L LS  Y +      S +  LS L  L
Sbjct:   121 LFRLQNLRVLDLTQNDLDGEIPSSIGNLSHLTSLHLS--YNQFLGLIPSSIENLSRLTSL 178

Query:   174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ 233
             ++S    S    S   I +L  L  L+LS  +       S  N S+LT L L  N F GQ
Sbjct:   179 HLSSNQFSGQIPSS--IGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQ 236

Query:   234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
             IPS +GNL  L +L L  N F   +      LN L VL ++ N+L G++  + L NLT +
Sbjct:   237 IPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVP-ISLLNLTRL 295

Query:   294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLR 353
               LLLS N +  G IP +   L  L  F  ++   +  +   L      +  +L    L 
Sbjct:   296 SALLLSHN-QFTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLN 354

Query:   354 GCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS--NNKLNGTVSE 411
             G   FG++++       L +L + +N   G+IP SL +  NL   DLS  N +       
Sbjct:   355 GTLHFGNISSP----SNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFS 410

Query:   412 I--HFVNLTKL-VSFLANA----NSLI--FK------INPNWV-----------PPFQ-L 444
             I  H  +L  L +S+L       N ++  FK      I+ N V           PP Q +
Sbjct:   411 IFSHLKSLDDLRLSYLTTTTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSI 470

Query:   445 TVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504
               L L  C +   FP  L+ Q +L  LD+S+ +I  ++P   W ++   +YLN+S N   
Sbjct:   471 QSLYLSGCGITD-FPEILRTQHELGFLDVSNNKIKGQVPGWLW-TLPNLFYLNLSNNTFI 528

Query:   505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF 564
                       +  +  PS++   +F  SNN  +G I   IC G    +++  L LS N++
Sbjct:   529 SFESSSKKHGLSSVRKPSMI--HLF-ASNNNFTGKIPSFIC-G---LRSLNTLDLSENNY 581

Query:   565 SEGIPDCWMNWPR-LRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNF 623
             +  IP C       L  LNL  NN +G LP  I                 G +P S   F
Sbjct:   582 NGSIPRCMEKLKSTLFVLNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLPRSLIRF 639

Query:   624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683
             S LE L+V  N +  + P W+    S+L +L+LRSN FHG  PI       L+I+D+++N
Sbjct:   640 SNLEVLNVESNRINDTFPFWLSS-LSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHN 696

Query:   684 SLLGTIP-RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVM-KGFLVEYNSILN 741
                GT+P      +SAM++   ++  S+  Y  SG     +D+ ++M KG  +E   IL 
Sbjct:   697 HFNGTLPTEYFVKWSAMSSLGKNEDQSNEKYMGSG--LYYQDSMVLMNKGLAMELVRILT 754

Query:   742 LVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801
             +  ++D S N F GEIP  +  L+ L  LNLS+N F G IP ++G + ++ESLD S N+L
Sbjct:   755 IYTALDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKL 814

Query:   802 SGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFAGN-DLCGAPLSS-CTEK 859
             +G+IPQ +                 G +P  TQ +  + S+F  N  L G  L   C +K
Sbjct:   815 TGEIPQELGDLSFLAYMNFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDK 874

Query:   860 NAIVTDDQNRIGN--EEDGDEVDWTLYVSMALGFVVG--FWCFIGPLLSNKRWRYKYFHF 915
             +   +  QN      EED +E+ W   ++ A+GF+ G  F   IG +L +    YK   F
Sbjct:   875 HTPASQ-QNETTETEEEDEEEISW---IAAAIGFIPGIVFGLTIGYILVS----YKPEWF 926

Query:   916 LDGIG 920
             ++  G
Sbjct:   927 MNPFG 931

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 282/923 (30%), Positives = 423/923 (45%)

Query:    31 SHRLA-SWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKI--NP 87
             SHR   SW G+N DCC W GV C   +G V+ELNL              S L G+   N 
Sbjct:     6 SHRKTESW-GNNSDCCNWEGVTCNAKSGEVIELNLSC------------SSLHGRFHSNS 52

Query:    88 SXXXXXXXXXXXXSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
             S            S NDF+G QI   + +L +L  L+LS  RF+G I + +GNLS L  L
Sbjct:    53 SIRNLHFLTTLDRSHNDFEG-QITSSIENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSL 111

Query:   148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
             DLS  + +   +  S +  LS L  L +S         S   I +L  L  L LS     
Sbjct:   112 DLS--FNQFSGQIPSSIGNLSHLTFLGLSGNRFFGQIPSS--IGNLSHLTFLGLSGNRFF 167

Query:   208 -HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
               FP  S    S+LT L LS N++ GQIPS +GNL+ L  L L  N F   +      LN
Sbjct:   168 GQFPS-SIGGLSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLN 226

Query:   267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
              L  L +  N+L G+  ++ L NLT +  + LS N++  G +P +   L  L +F  +  
Sbjct:   227 QLTRLDVSFNKLGGNFPNVLL-NLTGLSVVSLS-NNKFTGTLPPNITSLSNLMAFYASDN 284

Query:   327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
               +      L I        L    L+G   FG++++       L +L + +N   G IP
Sbjct:   285 AFTGTFPSFLFIIPSLTYLGLSGNQLKGTLEFGNISSP----SNLQYLNIGSNNFIGPIP 340

Query:   387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF----LANANSLIFKINPNWVPPF 442
              S+ ++ NL+ L +S+  LN     + F   + L S     L+   +    +N + +P F
Sbjct:   341 SSISKLINLQELGISH--LNTQCRPVDFSIFSHLKSLDDLRLSYLTTTTIDLN-DILPYF 397

Query:   443 Q-LTVLELRSCHLGPRFPLWLQLQ---KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNV 498
             + L  L+L    +       +      + +  L +S   I+D  P     +  +  +L+V
Sbjct:   398 KTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLYLSGCGITD-FPEIL-RTQHELGFLDV 455

Query:   499 SGNQIYGGVPKF--DSPSM-PLIITPSLLLG---------SIFDL--SNNALSGSIFHLI 544
             S N+I G VP +    P++  L ++ +  +G         S+  L  SNN  +G I   I
Sbjct:   456 SNNKIKGQVPGWLWTLPNLFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFI 515

Query:   545 CQGENFSKNIEFLKLSTNHFSEGIPDCWMNWP-RLRTLNLGNNNFTGSLPMSIGXXXXXX 603
             C+     +++  L LS N+FS  IP C  N    L  LNL  NN +G  P  I       
Sbjct:   516 CE----LRSLYTLDLSDNNFSGSIPRCMENLKSNLSELNLRQNNLSGGFPEHI--FESLR 569

Query:   604 XXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG 663
                       G +P S + FS LE L+V  N +    P W+     +L +L+LRSN FHG
Sbjct:   570 SLDVGHNQLVGKLPRSLRFFSNLEVLNVESNRINDMFPFWLSS-LQKLQVLVLRSNAFHG 628

Query:   664 DFPIQLCRLASLQILDVAYNSLLGTIP-RCINNFSAMATADSSDQSSDILYAFSGDNKIV 722
               PI       L+I+D+++N   G++P      +S M++  + +  S++ Y  SG     
Sbjct:   629 --PINQALFPKLRIIDISHNHFNGSLPTEYFVEWSRMSSLGTYEDGSNVNYLGSG---YY 683

Query:   723 EDTSLVM-KGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 781
             +D+ ++M KG   E   IL +  ++D S N F GEIP  +  L+ L  LNLS+N FTG I
Sbjct:   684 QDSMVLMNKGVESELVRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHI 743

Query:   782 PDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDAS 841
             P +IG + ++ESLD S N+L G+IPQ +                 G +P   Q  +   S
Sbjct:   744 PSSIGNLTALESLDVSQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCS 803

Query:   842 SFAGN-DLCGAPLSS-CTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVG--FWC 897
             SF GN  L G+ L   C + +   +  Q      E+ DE D   +++ A+GF  G  F  
Sbjct:   804 SFEGNLGLFGSSLEEVCRDIHTPASHQQFETPQTEEEDE-DLISWIAAAIGFGPGIAFGL 862

Query:   898 FIGPLLSNKRWRYKYFHFLDGIG 920
               G +L +    YK   F++  G
Sbjct:   863 MFGYILVS----YKPEWFMNPFG 881

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 249/796 (31%), Positives = 375/796 (47%)

Query:   157 HAET-ISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA 215
             H+ + +S L     L  L +S+ +LS    S   I +L  L  L LS      +   S  
Sbjct:    99 HSNSNLSMLQNFHFLTTLDLSYNHLSGQISSS--IGNLSHLTTLDLSGNNFSGWIPSSLG 156

Query:   216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
             N   LT+L L  N F G+IPS LGNL+ L  LDL +N F   +      LN L +L L++
Sbjct:   157 NLFHLTSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDN 216

Query:   276 NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
             N+L G++  L + NLT + ++ LS N +  G +P +   L  L SFS +       I   
Sbjct:   217 NKLSGNLP-LEVINLTKLSEISLSHN-QFTGTLPPNITSLSILESFSASGNNFVGTIPSS 274

Query:   336 LGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANL 395
             L          L++  L G   FG++++       L  L L  N + G IP S+ ++ NL
Sbjct:   275 LFTIPSITLIFLDNNQLSGTLEFGNISSP----SNLLVLQLGGNNLRGPIPTSISRLVNL 330

Query:   396 ESLDLSNNKLNGTVSEIHFVNLTKLVS-FLANANSLIFKINPNWVPP-FQLTV-LELRSC 452
              +LDLS+  + G V    F +L  L + +L+++N+    I+ N V   F++ + L+L   
Sbjct:   331 RTLDLSHFNIQGQVDFNIFSHLKLLGNLYLSHSNTTT-TIDLNAVLSCFKMLISLDLSGN 389

Query:   453 H-------------LG------------PRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487
             H             LG              FP  L+ Q+++  LDIS+ +I  ++P   W
Sbjct:   390 HVLVTNKSSVSDPPLGLIGSLNLSGCGITEFPDILRTQRQMRTLDISNNKIKGQVPS--W 447

Query:   488 NSIFQYYYLNVSGNQIYGGVPKFD-SPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546
               + Q  Y+++S N   G    F+ S  +   + P   +   F  SNN  SG I   IC 
Sbjct:   448 -LLLQLEYMHISNNNFIG----FERSTKLEKTVVPKPSMKHFFG-SNNNFSGKIPSFICS 501

Query:   547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPR-LRTLNLGNNNFTGSLPMSIGXXXXXXXX 605
                  +++  L LS N+FS  IP C   +   L  LNL  N  +GSLP +I         
Sbjct:   502 ----LRSLIILDLSNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--IKSLRSL 555

Query:   606 XXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF 665
                     G +P S  +FS LE L+V  N +  + P W+     +L +L+LRSN FHG  
Sbjct:   556 DVSHNELEGKLPRSLIHFSTLEVLNVESNRINDTFPFWLSS-LKKLQVLVLRSNAFHGR- 613

Query:   666 PIQLCRLASLQILDVAYNSLLGTIPR-CINNFSAMATADSSDQSSDILYAFSGDNKIVED 724
              I   R   L+I+D++ N   GT+P  C   ++ M + + ++   +  Y  SG      D
Sbjct:   614 -IHKTRFPKLRIIDISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSG---YYHD 669

Query:   725 TSLVM-KGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD 783
             + ++M KG  +E   IL +  ++D S N F GEIP  +  L+ L  LNLS N FTG IP 
Sbjct:   670 SMVLMNKGLEMELVRILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPS 729

Query:   784 NIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSF 843
             ++G +R +ESLD S N+LSG+IPQ +                 G++P  TQ ++  ASSF
Sbjct:   730 SMGNLRELESLDVSRNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSF 789

Query:   844 AGN-DLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGF--WCFIG 900
               N  LCG PL  C      V  +    G  E  +      +++ A+GF  G      IG
Sbjct:   790 EENLGLCGRPLEECR-----VVHEPTPSGESETLESEQVLSWIAAAIGFTPGIVLGLTIG 844

Query:   901 PL-LSNK-RWRYKYFH 914
              + LS+K RW +K  +
Sbjct:   845 HIVLSSKPRWFFKVLY 860

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 245/831 (29%), Positives = 388/831 (46%)

Query:    78 RSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQ 137
             R+   G+I  S            S N+F G QIP  L  L +L   NLS   F+G +P  
Sbjct:   145 RNHFSGRIPSSIGNLSHLIFVDFSHNNFSG-QIPSSLGYLSHLTSFNLSYNNFSGRVPSS 203

Query:   138 LGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVN-LSKASDSLLVINSLHSL 196
             +GNLS L  L LS   F    E  S L  L  L  L +   + + K   SL  ++ L S+
Sbjct:   204 IGNLSYLTTLRLSRNSF--FGELPSSLGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSI 261

Query:   197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
                K +F  +   P  S  N S LT+  LS N   G+IPS  GNL  L  L++ SN+ + 
Sbjct:   262 DLHKNNF--VGEIPF-SLGNLSCLTSFILSDNNIVGEIPSSFGNLNQLDILNVKSNKLSG 318

Query:   257 AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316
             +    L  L  L  LSL +NRL G + S  + +L+++ KL  +  +   G +P+S   + 
Sbjct:   319 SFPIALLNLRKLSTLSLFNNRLTGTLPS-NMSSLSNL-KLFDATENHFTGPLPSSLFNIP 376

Query:   317 KLTSFSMASTKLSQDISEILGIFSGCVAYE-LESLYLRGCQIFGHLTNQLGQFKRLNFLG 375
              L + ++ + +L+      LG F    +Y  L  L L      G +   + +   L  L 
Sbjct:   377 SLKTITLENNQLNGS----LG-FGNISSYSNLTVLRLGNNNFRGPIHRSISKLVNLKELD 431

Query:   376 LSNNQMDGSIPLSL-GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKI 434
             LSN    G +  ++   + ++E L+LS+     T+     ++  KL+  L  + S +   
Sbjct:   432 LSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTTIDMYEILSSFKLLDTLDLSGSHVSTT 491

Query:   435 NPNWVPPFQLTVLE---LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
             N + +    L ++    L  C +   FP +L+ Q+ +  LDIS+ +I  ++P   W  + 
Sbjct:   492 NKSSLSNSSLVLISQLYLSGCGI-TEFPKFLRSQELMLTLDISNNKIKGQVPGWLW-MLP 549

Query:   492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS 551
                Y+N+S N   G   +     +  I  P  +   +F  SNN  +G+I   IC+    S
Sbjct:   550 VLNYVNLSNNTFIG-FERSTKLGLTSIQEPPAMR-QLF-CSNNNFTGNIPSFICELPYLS 606

Query:   552 KNIEFLKLSTNHFSEGIPDCWMNW--PRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXX 609
               ++F   S N F+  IP C  N   P L+ LNL +N  +G LP +I             
Sbjct:   607 -TLDF---SNNKFNGSIPTCMGNIQSPYLQALNLRHNRLSGLLPENI--FESLISLDVGH 660

Query:   610 XXXXGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQL 669
                 G +P S  + S L  L+V  N++  + P W+      L +L+LRSN F+G  PI+ 
Sbjct:   661 NQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWLSS-LQELQVLVLRSNAFYG--PIEK 717

Query:   670 CRLASLQILDVAYNSLLGTIP-RCINNFSAMATADSS-DQSSDILYA---FSGDNKIVED 724
              + + L+I+D++ N   GT+P     N++AM + D + DQS+    +    S D    + 
Sbjct:   718 TQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLDENEDQSNGETMSNMYMSTDYFYFDS 777

Query:   725 TSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN 784
               L+ KG  +E   +L +   ID S N F GEIP  +  L+ L  LNLS+N  +G I  +
Sbjct:   778 MVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPKSIGLLKELHVLNLSNNALSGHIASS 837

Query:   785 IGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFA 844
             +G + ++ESLD S N+LSG+IPQ +                 G +P  TQ Q+   SSF 
Sbjct:   838 MGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMNFSHNQLVGLLPGGTQFQTQKCSSFE 897

Query:   845 GND-LCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVG 894
              N  L G  L    + +   T  Q+ +  E + DE +   +++  +GF++G
Sbjct:   898 DNHGLYGPSLEKICDIHG-KTPQQSDMAPEPEEDEEEVISWIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 231/737 (31%), Positives = 351/737 (47%)

Query:   175 ISFVNLSKASDSLLVINSLHSLKELKLSFCELH-HFPLLSSANFSSLTTLDLSGNQFQGQ 233
             I+F N +        I +  +LK L LSF      FP +   N + L  LDLS N F G 
Sbjct:    68 INFQNQNFTGTVPTTICNFPNLKSLNLSFNYFAGEFPTVLY-NCTKLQYLDLSQNLFNGS 126

Query:   234 IPSRLGNLT-SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTS 292
             +P  +  L   LK+LDL +N F   +   + +++ L+VL+L  +   G   S  + +L+ 
Sbjct:   127 LPDDINRLAPKLKYLDLAANSFAGDIPKNIGRISKLKVLNLYMSEYDGTFPS-EIGDLSE 185

Query:   293 IQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
             +++L L+ ND+    K+PT FGKL KL    +    L  +IS +  +F      +L+ + 
Sbjct:   186 LEELQLALNDKFTPVKLPTEFGKLKKLKYMWLEEMNLIGEISAV--VFENMT--DLKHVD 241

Query:   352 LRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE 411
             L    + G + + L   K L  L L  N + G IP S+    NL  LDLS N LNG++ E
Sbjct:   242 LSVNNLTGRIPDVLFGLKNLTELYLFANDLTGEIPKSISAK-NLVHLDLSANNLNGSIPE 300

Query:   412 IHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVLELRSCHLGPRFPLWLQLQKKLND 470
                 NLT L       N L  +I P  +    +L  L+L +  L    P  +    KL  
Sbjct:   301 -SIGNLTNLELLYLFVNELTGEI-PRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLER 358

Query:   471 LDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF--DSPSMPLIITPSL-LLGS 527
              ++S  +++ K+P    +   +   + V  N + G +P+   D  ++  ++  +    GS
Sbjct:   359 FEVSENQLTGKLPENLCHG-GKLQSVIVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGS 417

Query:   528 IF----DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNL 583
             +       SNN  +G I   IC+      ++  L LSTN F+  IP C  N   L  LNL
Sbjct:   418 VTISNNTRSNNNFTGKIPSFICE----LHSLILLDLSTNKFNGSIPRCIANLSTLEVLNL 473

Query:   584 GNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGENELVGSIPTW 643
             G N+ +GS+P +I                 G +P S    S LE L+V  N++  + P W
Sbjct:   474 GKNHLSGSIPENISTSVKSIDIGHNQLA--GKLPRSLVRISSLEVLNVESNKINDTFPFW 531

Query:   644 IGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR-CINNFSAMATA 702
             + +   +L +L+LRSN FHG   I     + L+I+D++ N   GT+P     N++AM + 
Sbjct:   532 L-DSMQQLQVLVLRSNAFHGS--INQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSL 588

Query:   703 DS-SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV 761
                 DQ     Y  +  N   +   +++KG  +E   ILN   +ID S N F GEIP  V
Sbjct:   589 GKIEDQYMGTNYMRT--NYYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSV 646

Query:   762 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXX 821
               L+ L  LNLS+N FTG IP ++G +  +ESLD S N+LSG+IP  +            
Sbjct:   647 GLLKELHVLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFS 706

Query:   822 XXXXXGEIPSSTQLQSFDASSFAGND-LCGAPLSS-CTEKNAIVTDDQNRIGN-EEDGDE 878
                  G +P  TQ Q+   SSFA N  L G  L   C + +   T  Q+ +   EED +E
Sbjct:   707 QNQFVGLVPGGTQFQTQPCSSFADNPRLFGLSLERVCVDIHK-KTPQQSEMPEPEEDEEE 765

Query:   879 V-DWTLYVSMALGFVVG 894
             V +WT   + A+G + G
Sbjct:   766 VMNWT---AAAIGSIPG 779

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 234/750 (31%), Positives = 354/750 (47%)

Query:   183 ASDSLLVINSLHSLKELKLSFCELH-HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNL 241
             ++ SL  + +L  L  L LS+       P     NFS LTTLDLS N F G IPS +GNL
Sbjct:   108 SNSSLFTVLNLRFLTTLDLSYNYFSGQIPSCIE-NFSHLTTLDLSKNYFSGGIPSSIGNL 166

Query:   242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             + L  LDL  N+F    + +   +N L  L ++ N L G I  L L NL  +  L LS N
Sbjct:   167 SQLTFLDLSGNEFVGE-MPFFGNMNQLTNLYVDSNDLTG-IFPLSLLNLKHLSDLSLSRN 224

Query:   302 DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHL 361
              +  G +P++   L  L  F       +  +   L   +   +  L +  L G   FG++
Sbjct:   225 -QFTGTLPSNMSSLSNLEYFEAWGNAFTGTLPSSLFTIASLTSINLRNNQLNGTLEFGNI 283

Query:   362 T-------------NQLG-------QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS 401
             +             N +G       +F  L  L LS+    G +  S+    NL+SL L 
Sbjct:   284 SSPSTLTVLDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSI--FTNLKSLQLL 341

Query:   402 N-NKLNGTVS-EIHFV---NLTKLVSFLANAN--SLIFKINPNWVPPFQL-TVLELRSCH 453
             N + LN T + +++ +   +L  + S   + N  S   KI+     P QL + L L  C 
Sbjct:   342 NLSHLNTTTTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCG 401

Query:   454 LGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSP 513
             +   FP  L+ Q K+ +LDIS+ +I  ++P   W ++ +  ++++S N I+ G  +    
Sbjct:   402 I-TEFPELLRSQHKMTNLDISNNKIKGQVPGWLW-TLPKLIFVDLSNN-IFTGFERSTEH 458

Query:   514 SMPLIITPSL--LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC 571
              + LI  PS+  L+GS     NN  +G I   IC      +++  L LS N+ +  IP C
Sbjct:   459 GLSLITKPSMQYLVGS-----NNNFTGKIPSFICA----LRSLITLDLSDNNLNGSIPPC 509

Query:   572 WMNWPR-LRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALD 630
               N    L  LNL  N   G LP SI                 G +P SF   S LE L+
Sbjct:   510 MGNLKSTLSFLNLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLN 567

Query:   631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP 690
             V  N +  + P W+     +L +L+LRSN FHG  PI      +L+I+++++N   GT+P
Sbjct:   568 VENNRINDTFPFWLSS-LKKLQVLVLRSNAFHG--PIHHASFHTLRIINLSHNQFSGTLP 624

Query:   691 -RCINNFSAMATADSSDQSSDILYAFSGDN-KIVEDTSLVM-KGFLVEYNSILNLVRSID 747
                  N++AM++  +++  S   Y   GD+ +   D+ ++M KG  +E   IL +  ++D
Sbjct:   625 ANYFVNWNAMSSLMATEDRSQEKYM--GDSFRYYHDSVVLMNKGLEMELVRILKIYTALD 682

Query:   748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 807
              S N   GEIP  +  L+ L  LNLS N FTG IP ++G +R +ESLD S N+LSG+IPQ
Sbjct:   683 FSENKLEGEIPRSIGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQ 742

Query:   808 SMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFAGND-LCGAPLSS-CTEKNAIVTD 865
              +                 G +P  TQ +  + SSF  N  L G+ L   C + +A    
Sbjct:   743 ELGNLSYLAYMNFSHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQ 802

Query:   866 DQNRIGNEEDGDEV-DWTLYVSMALGFVVG 894
                    EE+  EV  W   ++ A+GF  G
Sbjct:   803 QHEPPELEEEDREVFSW---IAAAIGFGPG 829

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 247/846 (29%), Positives = 389/846 (45%)

Query:   102 GN-DFQG-IQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAE 159
             GN D  G ++    L  L +L+ L+LS    +  +P   GN   L+ L+L G    L  E
Sbjct:    87 GNSDLNGRLRSNSSLFRLQHLQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLGC--NLFGE 144

Query:   160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSS 219
               + L  LS L  L +S+ N     + L  + +L  L+ L L+ C+       S  N + 
Sbjct:   145 IPTSLRSLSYLTDLDLSY-NDDLTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTY 203

Query:   220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV---LGWLSKLNDLEVLSLEDN 276
             LT LDLS N F G++P  +GNL SL+ L+L+   F   +   LG LS L DL++ S  + 
Sbjct:   204 LTDLDLSWNYFTGELPDSMGNLKSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDI-SKNEF 262

Query:   277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
               +G  S   L+ LT  Q +LL+               L  LT+  ++S +    +   +
Sbjct:   263 TSEGPDSMSSLNRLTDFQLMLLN---------------LSSLTNVDLSSNQFKAMLPSNM 307

Query:   337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMA--- 393
                S     +LE+  + G    G + + L     L  L L  N   G  PL +G ++   
Sbjct:   308 SSLS-----KLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTNDFSG--PLKIGNISSPS 360

Query:   394 NLESLDLSNNKLNGTV--SEIHFVNLTKL-VSFLANANSLIFKINPNWVPPFQLTVLELR 450
             NL+ L +  N +NG +  S +  V L+ L +SF      + F I   ++    L  L+L 
Sbjct:   361 NLQELYIGENNINGPIPRSILKLVGLSALSLSFWDTGGIVDFSI---FLQLKSLRSLDLS 417

Query:   451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
               +L         L   +  L +SS  IS + P+   N     Y+L++S NQI G VP++
Sbjct:   418 GINLN--ISSSHHLPSHMMHLILSSCNIS-QFPKFLENQT-SLYHLDISANQIEGQVPEW 473

Query:   511 --DSPSMPLI-ITPSLLLGSI---------FDLSNNALSGSIFHLICQGENFSKNIEFLK 558
                 P++  + I  +   G +         F  S+N  SG I   +C+       I  L 
Sbjct:   474 LWRLPTLRYVNIAQNAFSGELTMLPNPIYSFIASDNKFSGEIPRAVCE-------IGTLV 526

Query:   559 LSTNHFSEGIPDCW-MNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIP 617
             LS N+FS  IP C+ ++   L  L+L NN+ +G +P                    G  P
Sbjct:   527 LSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEE-SLHGYLRSLDVGSNRLSGQFP 585

Query:   618 TSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF--PIQLCRLASL 675
              S  N S L+ L+V EN +  + P+W+ +    L +L+LRSN+FHG    P      + L
Sbjct:   586 KSLINCSYLQFLNVEENRINDTFPSWL-KSLPNLQLLVLRSNEFHGPIFSPGDSLSFSKL 644

Query:   676 QILDVAYNSLLGTIPR-CINNFSAMAT-ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFL 733
             +  D++ N   G +P      +S M++  D  D +              +   L +KG  
Sbjct:   645 RFFDISENRFSGVLPSDYFVGWSVMSSFVDIIDNTPGFTVVGDDQESFHKSVVLTIKGLN 704

Query:   734 VEY-NSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792
             +E   S   + ++ID+S N   G+IP  +  L+ L  LN+S+N FTG IP ++  + +++
Sbjct:   705 MELVGSGFEIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLSNLSNLQ 764

Query:   793 SLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFAGND-LCGA 851
             SLD S N+LSG IP  +                 G IP  TQ+QS ++SSFA N  LCGA
Sbjct:   765 SLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEGPIPQGTQIQSQNSSSFAENPGLCGA 824

Query:   852 PLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLYVSMALGFVVGFWC--FIGPLLSN-KR- 907
             PL    +K     +++++   E+D   + W   V+ A+G+V G +C   IG +L++ KR 
Sbjct:   825 PL----QKKCGGEEEEDKEKEEKDKG-LSW---VAAAIGYVPGLFCGLAIGHILTSYKRD 876

Query:   908 WRYKYF 913
             W  + F
Sbjct:   877 WFMRIF 882

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
 Identities = 246/837 (29%), Positives = 378/837 (45%)

Query:   121 RYLNLSQARFTGM-IPHQLGNLSNLQYLD-LSGVYFELHAETISWLSGLSLLEHLYISFV 178
             R+ N S   F G+   +  G ++ LQ  D LSG       ++ S L G   L +L ++  
Sbjct:    58 RHCNHSDD-FNGVWCDNSTGAVTVLQLRDCLSGTL-----KSNSSLFGFHQLRYLALNRN 111

Query:   179 NLSKAS--DSLLVINSLHSLKELKLSFCELHHFPLLSS----ANFSSLTTLDLSGNQFQG 232
             N + AS       +N L  L      F +L H  L+ S     N   L  LDLS N F G
Sbjct:   112 NFTSASLPSEFCNLNKLKLLSLFSNGFIDLSHNDLMGSFPLVRNLGKLAVLDLSDNHFSG 171

Query:   233 QI-PSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNL 290
              + P+  L  L SL++L+L  N  +S++      LN LEVLSL  N   G      + NL
Sbjct:   172 TLNPNNSLFELHSLRYLNLAFNNISSSLPSKFGNLNKLEVLSLSFNGFSGQCFPT-ISNL 230

Query:   291 TSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL 350
             T I +L L  N+EL G  P     L KL+   ++    S  I   L  F       L +L
Sbjct:   231 TRITQLYLH-NNELTGSFPL-VQNLTKLSFLGLSDNLFSGTIPSYLFTFPS-----LSTL 283

Query:   351 YLRGCQIFGHL-TNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTV 409
              LR   + G +         +L  + L  N ++G I   + ++ NL+ LDLS    +  +
Sbjct:   284 DLRENDLSGSIEVPNSSTSSKLEIMYLGFNHLEGKILEPISKLINLKRLDLSFLNTSYPI 343

Query:   410 SEIHFVNLTKLVSFLA-NANSLI-FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKK 467
              +++ ++  K +S+L  + NSL    ++ +   P  +  + L  C +   FP  L+  + 
Sbjct:   344 -DLNLLSPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCGIR-EFPNILKHLQN 401

Query:   468 LNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI---YGGVPKFDSPSMPLIIT---- 520
             L  +DI+S +I  KIP   W ++ Q  ++++S N      G    F + S+ +++     
Sbjct:   402 LIHIDITSNQIKGKIPEWLW-TLPQLSFVDISNNSFNGFQGSAEVFVNLSVRILMLDANN 460

Query:   521 -----PSLLLGSI-FDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN 574
                  P+L L  I F   +N+ +G I   IC       ++  + LS N+F+  IP C  N
Sbjct:   461 FEGALPTLPLSIIGFSAIHNSFTGEIPLSICN----RTSLTMVDLSYNNFTGPIPQCLSN 516

Query:   575 WPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEALDVGEN 634
             +     +NL  N+  GS+P +                  G +P S  N S L  L V  N
Sbjct:   517 F---MFVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLLNCSSLRFLSVDNN 573

Query:   635 ELVGSIPTWIGERFSRLMILILRSNKFHGDF--PIQ-LCRLASLQILDVAYNSLLGTIPR 691
              +  + P W+ +    L +L LRSNKF+G    P Q       L+I ++A N   G++P 
Sbjct:   574 RVKDTFPFWL-KALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFEIADNMFTGSLPP 632

Query:   692 CIN-NFSAMATADSSDQSSDILYAFS-GDNKIVE----DT-SLVMKGFLVEYNSILNLVR 744
                 N+ A A   + D    ++Y +    N  V     DT  L  KG  +E   +L    
Sbjct:   633 SFFVNWKASALTKNEDGGLYMVYEYDKAANSPVRYTYTDTIDLQYKGLHMEQERVLTSYA 692

Query:   745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 804
             +ID S N   G+IP  +  L+ L +LNLS+N FTG IP +   + ++ESLD S NQLSG 
Sbjct:   693 AIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNLESLDMSGNQLSGT 752

Query:   805 IPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSFAGN-DLCGAPLS-SCTEKNAI 862
             IP  +                 GEIP  TQ+     SSF GN  LCG PL  +C + +  
Sbjct:   753 IPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCGLPLQETCFDSS-- 810

Query:   863 VTDDQNRIGNEEDGDEVDWTLYVSMALGFVVG--FWCFIGPLLSNKR--WRYKYFHF 915
             V   Q +  +EE G+ ++W    ++A+G+  G  F   I  L+++ +  W  K   F
Sbjct:   811 VPPIQPKQEDEEKGEVINWK---AVAIGYAPGLLFGLAIAHLIASYKPEWLVKIIGF 864

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	931
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-60
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-49
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-36
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-33
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-11
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-07
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  221 bits (564), Expect = 7e-60
 Identities = 198/655 (30%), Positives = 282/655 (43%), Gaps = 100/655 (15%)

Query: 16  EREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEA 75
           E E LL  K  + DP   L++W     D C W G+ C N +  V+ ++L        N  
Sbjct: 30  ELELLLSFKSSINDPLKYLSNWNSSA-DVCLWQGITCNNSS-RVVSIDL-----SGKN-- 80

Query: 76  YQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLV-NLRYLNLSQARFTGMI 134
                + GKI+ ++  L ++  ++LS N   G  IP  + +   +LRYLNLS   FTG I
Sbjct: 81  -----ISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSI 134

Query: 135 PHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLH 194
           P   G++ NL+ LDLS           + LSG    +                  I S  
Sbjct: 135 PR--GSIPNLETLDLSN----------NMLSGEIPND------------------IGSFS 164

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           SLK L L    L      S  N +SL  L L+ NQ  GQIP  LG + SLK + L  N  
Sbjct: 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDI-SSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
           +  +   +  L  L  L L  N L G I SSLG  NL ++Q L L + ++L G IP S  
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG--NLKNLQYLFL-YQNKLSGPIPPSIF 281

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373
            L KL S  ++   LS +I E++          LE L+L      G +   L    RL  
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKIPVALTSLPRLQV 336

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE--IHFVNLTKLVSFLANANSLI 431
           L L +N+  G IP +LG+  NL  LDLS N L G + E      NL KL+ F   +NSL 
Sbjct: 337 LQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLE 393

Query: 432 FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
            +I  +      L  + L+        P        +  LDIS+  +  +I    W+ + 
Sbjct: 394 GEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MP 452

Query: 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS 551
               L+++ N+ +GG+P                                          S
Sbjct: 453 SLQMLSLARNKFFGGLPDSFG--------------------------------------S 474

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
           K +E L LS N FS  +P    +   L  L L  N  +G +P  + +   L SL+L +N+
Sbjct: 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ 534

Query: 612 LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
           LSG IP SF    +L  LD+ +N+L G IP  +G     L+ + +  N  HG  P
Sbjct: 535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG-NVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  189 bits (481), Expect = 2e-49
 Identities = 189/668 (28%), Positives = 291/668 (43%), Gaps = 148/668 (22%)

Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKL-NDLEVLSLE 274
           N S + ++DLSG    G+I S +  L  ++ ++L +NQ +  +   +    + L  L+L 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
           +N   G I    + NL   + L LS N+ L G+IP                     DI  
Sbjct: 127 NNNFTGSIPRGSIPNL---ETLDLS-NNMLSGEIP--------------------NDI-- 160

Query: 335 ILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMAN 394
             G FS      L+ L L G  + G + N L     L FL L++NQ+ G IP  LGQM +
Sbjct: 161 --GSFS-----SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213

Query: 395 LESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL 454
           L+ + L  N L+G +                               P+++  L       
Sbjct: 214 LKWIYLGYNNLSGEI-------------------------------PYEIGGL------- 235

Query: 455 GPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN-SIFQYYYLNVSGNQIYGGVPKFDSP 513
                        LN LD+    ++  IP +  N    QY +L    N++ G +P     
Sbjct: 236 -----------TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL--YQNKLSGPIP----- 277

Query: 514 SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWM 573
             P I +   L+    DLS+N+LSG I  L+ Q     +N+E L L +N+F+  IP    
Sbjct: 278 --PSIFSLQKLIS--LDLSDNSLSGEIPELVIQ----LQNLEILHLFSNNFTGKIPVALT 329

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
           + PRL+ L L +N F+G +P ++G   +L  L+L  N L+G IP    +   L  L +  
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCI 693
           N L G IP  +G   S L  + L+ N F G+ P +  +L  +  LD++ N+L G I    
Sbjct: 390 NSLEGEIPKSLGACRS-LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 694 NNFSAMATAD-SSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN 752
            +  ++     + ++    L    G  ++                       ++D+S N 
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRL----------------------ENLDLSRNQ 486

Query: 753 FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL 812
           FSG +P ++ +L  L  L LS N  +G IPD +   + + SLD S NQLSGQIP S S +
Sbjct: 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM 546

Query: 813 SFLNYLNLSNNNLNGEI------------------------PSSTQLQSFDASSFAGN-D 847
             L+ L+LS N L+GEI                        PS+    + +AS+ AGN D
Sbjct: 547 PVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNID 606

Query: 848 LCGAPLSS 855
           LCG   +S
Sbjct: 607 LCGGDTTS 614

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  149 bits (377), Expect = 1e-36
 Identities = 159/588 (27%), Positives = 251/588 (42%), Gaps = 108/588 (18%)

Query: 54  NFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKY 113
           NFTG +   ++ N  + D       +ML G+I   +     L  LDL GN   G +IP  
Sbjct: 129 NFTGSIPRGSIPNLETLD----LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG-KIPNS 183

Query: 114 LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL 173
           L +L +L +L L+  +  G IP +LG + +L+++ L   Y  L  E    + GL+ L HL
Sbjct: 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG--YNNLSGEIPYEIGGLTSLNHL 241

Query: 174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ 233
            + + NL+    S     SL +LK L+  F                     L  N+  G 
Sbjct: 242 DLVYNNLTGPIPS-----SLGNLKNLQYLF---------------------LYQNKLSGP 275

Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
           IP  + +L  L  LDL  N  +  +   + +L +LE+L L  N   G I  + L +L  +
Sbjct: 276 IPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-PVALTSLPRL 334

Query: 294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLR 353
           Q L L W+++  G+IP + GK   LT   +++  L+ +I E L     C +         
Sbjct: 335 QVLQL-WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGL-----CSS--------- 379

Query: 354 GCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIH 413
                G+L            L L +N ++G IP SLG   +L  + L +N  +G +    
Sbjct: 380 -----GNLFK----------LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-E 423

Query: 414 FVNLTKLVSFL-ANANSLIFKIN-PNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL 471
           F  L  LV FL  + N+L  +IN   W  P  L +L L         P      K+L +L
Sbjct: 424 FTKL-PLVYFLDISNNNLQGRINSRKWDMP-SLQMLSLARNKFFGGLPDSFG-SKRLENL 480

Query: 472 DISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDL 531
           D+S  + S  +PR    S+ +   L +S N++ G +P                     +L
Sbjct: 481 DLSRNQFSGAVPRKL-GSLSELMQLKLSENKLSGEIPD--------------------EL 519

Query: 532 SNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS 591
           S+                  K +  L LS N  S  IP  +   P L  L+L  N  +G 
Sbjct: 520 SS-----------------CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGE 562

Query: 592 LPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS 639
           +P ++G + SL  +N+ +N L G +P++    +I  +   G  +L G 
Sbjct: 563 IPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGG 610

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (352), Expect = 1e-33
 Identities = 99/283 (34%), Positives = 138/283 (48%), Gaps = 24/283 (8%)

Query: 549 NFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT-SLRSLNL 607
           N S  +  + LS  + S  I       P ++T+NL NN  +G +P  I T + SLR LNL
Sbjct: 66  NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNL 125

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667
            NN  +G IP        LE LD+  N L G IP  IG  FS L +L L  N   G  P 
Sbjct: 126 SNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPN 182

Query: 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL 727
            L  L SL+ L +A N L+G IPR +             Q   + + + G N +  +   
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRELG------------QMKSLKWIYLGYNNLSGEIPY 230

Query: 728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787
            + G        L  +  +D+  NN +G IP  + NL+ LQ L L  N  +G IP +I  
Sbjct: 231 EIGG--------LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP 830
           ++ + SLD S N LSG+IP+ +  L  L  L+L +NN  G+IP
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.9 bits (205), Expect = 3e-16
 Identities = 43/106 (40%), Positives = 65/106 (61%), Gaps = 4/106 (3%)

Query: 755 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 814
           G IP +++ L+ LQS+NLS N   G IP ++G + S+E LD S N  +G IP+S+  L+ 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 815 LNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND---LCGAP-LSSC 856
           L  LNL+ N+L+G +P++   +    +SF   D   LCG P L +C
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRAC 537

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 9e-12
 Identities = 28/81 (34%), Positives = 53/81 (65%)

Query: 729 MKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 788
           ++GF+    S L  ++SI++S N+  G IP  + ++  L+ L+LS+N F G IP+++G +
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 789 RSIESLDFSANQLSGQIPQSM 809
            S+  L+ + N LSG++P ++
Sbjct: 490 TSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 9e-12
 Identities = 40/111 (36%), Positives = 52/111 (46%), Gaps = 2/111 (1%)

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSI 640
           L L N    G +P  I  L  L+S+NL  N + G IP S  + + LE LD+  N   GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 641 PTWIGERFSRLMILILRSNKFHGDFPIQL-CRLASLQILDVAYNSLLGTIP 690
           P  +G+  + L IL L  N   G  P  L  RL      +   N+ L  IP
Sbjct: 483 PESLGQ-LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.4 bits (162), Expect = 5e-11
 Identities = 28/80 (35%), Positives = 45/80 (56%)

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
           IP+       L+++NL  N+  G++P S+G++TSL  L+L  N  +G IP S    + L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 628 ALDVGENELVGSIPTWIGER 647
            L++  N L G +P  +G R
Sbjct: 494 ILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 2e-10
 Identities = 64/237 (27%), Positives = 92/237 (38%), Gaps = 56/237 (23%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGN 140
           L G+IN    ++  L  L L+ N F G  +P    S   L  L+LS+ +F+G +P +LG+
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFG-GLPDSFGS-KRLENLDLSRNQFSGAVPRKLGS 497

Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
           LS L  L LS                                        N L      +
Sbjct: 498 LSELMQLKLSE---------------------------------------NKLSGEIPDE 518

Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
           LS C+              L +LDLS NQ  GQIP+    +  L  LDL  NQ +  +  
Sbjct: 519 LSSCK-------------KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPK 565

Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCK 317
            L  +  L  +++  N L G + S G     +I    ++ N +L G   TS    CK
Sbjct: 566 NLGNVESLVQVNISHNHLHGSLPSTGA--FLAINASAVAGNIDLCGGDTTSGLPPCK 620

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 50/145 (34%), Positives = 67/145 (46%), Gaps = 27/145 (18%)

Query: 16  EREALLKLKHDLRDPSHRLASWIGDNGDCC-----KWGGVLC--GNFTGH--VLELNLQN 66
           E  AL  LK  L  P        G NGD C      W G  C   +  G   +  L L  
Sbjct: 373 EVSALQTLKSSLGLPLR-----FGWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGL-- 425

Query: 67  PFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLS 126
                DN+      L G I   + +L+HL  ++LSGN  +G  IP  L S+ +L  L+LS
Sbjct: 426 -----DNQG-----LRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLS 474

Query: 127 QARFTGMIPHQLGNLSNLQYLDLSG 151
              F G IP  LG L++L+ L+L+G
Sbjct: 475 YNSFNGSIPESLGQLTSLRILNLNG 499

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.6 bits (147), Expect = 2e-09
 Identities = 29/72 (40%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 359 GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLT 418
           G + N + + + L  + LS N + G+IP SLG + +LE LDLS N  NG++ E     LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLT 490

Query: 419 KLVSFLANANSL 430
            L     N NSL
Sbjct: 491 SLRILNLNGNSL 502

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 60.2 bits (146), Expect = 4e-09
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 530 DLSNNALSGSIFHLICQGENFSK--NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN 587
            L N  L G I        + SK  +++ + LS N     IP    +   L  L+L  N+
Sbjct: 424 GLDNQGLRGFI------PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS 619
           F GS+P S+G LTSLR LNL  N LSG +P +
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 1e-08
 Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 1/68 (1%)

Query: 220 LTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279
           L +++LSGN  +G IP  LG++TSL+ LDL  N FN ++   L +L  L +L+L  N L 
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 280 GDI-SSLG 286
           G + ++LG
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 56.8 bits (137), Expect = 5e-08
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 749 SMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 808
           S  +      +   N   + S++LS    +G+I   I  +  I++++ S NQLSG IP  
Sbjct: 53  SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112

Query: 809 MSNLSF-LNYLNLSNNNLNGEIP--SSTQLQSFDASS 842
           +   S  L YLNLSNNN  G IP  S   L++ D S+
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSN 149

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 13 IESEREALLKLKHDL-RDPSHRLASWIGDNGDCCKWGGVLC 52
          +  +R+ALL  K  L  DPS  L+SW   + D C W GV C
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.2 bits (130), Expect = 2e-07
 Identities = 68/258 (26%), Positives = 115/258 (44%), Gaps = 17/258 (6%)

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
           L  L  L  L ++   L      LL + +L SL     +  ++     L  +N   L  L
Sbjct: 89  LLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSN---LKEL 145

Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDIS 283
           DLS N+ +  +PS L NL +LK+LDL  N  +      LS L++L  L L  N++  D+ 
Sbjct: 146 DLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNKIS-DLP 202

Query: 284 SLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCV 343
              ++ L+++++L LS N  +  ++ +S   L  L+   +++ KL      I  + +   
Sbjct: 203 PE-IELLSALEELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN--- 256

Query: 344 AYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNN 403
              LE+L L   QI     + LG    L  L LS N +  ++PL    +  LE L     
Sbjct: 257 ---LETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Query: 404 KLNGTVSEIHFVNLTKLV 421
            L     +++ + L   +
Sbjct: 312 TLKALELKLNSILLNNNI 329

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 52.7 bits (127), Expect = 4e-07
 Identities = 65/243 (26%), Positives = 88/243 (36%), Gaps = 33/243 (13%)

Query: 91  ELKHLVHLDLSGNDFQGI---QIPKYLASLVNLRYLNLSQARFTGMIP-------HQLGN 140
           +L  L  L L GN         +   L    +L+ L LS    TG IP         L  
Sbjct: 21  KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS-LNETGRIPRGLQSLLQGLTK 79

Query: 141 LSNLQYLDLSGVYFELH-AETISWLSGLSLLEHLYISFVNLSKASDSLLVINSL----HS 195
              LQ LDLS           +  L   S L+ L ++   L      LL    L     +
Sbjct: 80  GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL-AKGLKDLPPA 138

Query: 196 LKELKLSFCELHHFPLLSSAN----FSSLTTLDLSGNQFQGQIPSRLG----NLTSLKHL 247
           L++L L    L      + A        L  L+L+ N         L        +L+ L
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVL 198

Query: 248 DLYSNQFN----SAVLGWLSKLNDLEVLSLEDNRLQG----DISSLGLDNLTSIQKLLLS 299
           DL +N       SA+   L+ L  LEVL+L DN L       ++S  L    S+  L LS
Sbjct: 199 DLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLS 258

Query: 300 WND 302
            ND
Sbjct: 259 CND 261

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 69/239 (28%), Positives = 96/239 (40%), Gaps = 32/239 (13%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
            LLEL +L  LDL  N+   I     L    NL+ L+LS  +    +P  L NL NL+ L
Sbjct: 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKS-NLKELDLSDNKIE-SLPSPLRNLPNLKNL 168

Query: 148 DLSGVYFELHAETISWLSG-LSLLEHLYISFVNLSKASDSLLVINSLHSL---------- 196
           DLS          +  L   LS L +L +S   +S     + ++++L  L          
Sbjct: 169 DLS----FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIEL 224

Query: 197 -----KELKLSFCELHHFPLLSS----ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
                    LS  EL +  L        N S+L TLDLS N  Q    S LG+LT+L+ L
Sbjct: 225 LSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLREL 282

Query: 248 DLYSNQFNSA----VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND 302
           DL  N  ++A     L  L     L +L           S L  +N+ S  +       
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 36/69 (52%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           I+ L  L+ + LS   +      S  + +SL  LDLS N F G IP  LG LTSL+ L+L
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Query: 250 YSNQFNSAV 258
             N  +  V
Sbjct: 498 NGNSLSGRV 506

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 13/120 (10%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF-SEG---IPDCWMNWPRLRTLNLGN 585
           +L+NN +  +    + +G   + N+E L L+ N    EG   + +   +   L  LNLG+
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 586 NNFTGS-----LPMSIGTLTSLRSLNLRNNRL--SGVIP--TSFKNFSILEALDVGENEL 636
           NN T +         +    SL +L+L  N +   G             L  LD+  N+ 
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 5e-06
 Identities = 28/63 (44%), Positives = 38/63 (60%)

Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
           L+S+ L G  I G++   LG    L  L LS N  +GSIP SLGQ+ +L  L+L+ N L+
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 407 GTV 409
           G V
Sbjct: 504 GRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 6e-06
 Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 26/153 (16%)

Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
           L L     +G IP+ +  L  L+ ++L  N     +   L  +  LEVL L  N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 283 -SSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK---------------LCKLTSFSMAST 326
             SLG   LTS++ L L+ N  L G++P + G                LC +        
Sbjct: 483 PESLGQ--LTSLRILNLNGN-SLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP 539

Query: 327 KLSQDISEILGI-FSGCVAYELESLYLRGCQIF 358
            LS  +   +GI F   VA+    L+L  C + 
Sbjct: 540 HLS--VGAKIGIAFGVSVAF----LFLVICAMC 566

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 25/60 (41%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
           +L +LDLS N+           L +LK LDL  N   S      S L  L  L L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636
            L++L+L NN  T     +   L +L+ L+L  N L+ + P +F     L +LD+  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQLQSFDAS--SFA 844
           I+ L      L G IP  +S L  L  +NLS N++ G IP S    T L+  D S  SF 
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 845 G 845
           G
Sbjct: 480 G 480

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
            L+SL+LS+N  T         + +++ LD S N L+   P++ S L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
           N++ L LS N  +      +   P L+ L+L  NN T   P +   L SLRSL+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 3/104 (2%)

Query: 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802
           ++ +D+S N     +P  + NL  L++L+LS N  +  +P  +  + ++ +LD S N++S
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 803 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN 846
             +P  +  LS L  L+LSNN++   + S + L++      + N
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 815
           ++P  ++NL  L +L+LS N  +  +P  I ++ ++E LD S N +  ++  S+SNL  L
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL 234

Query: 816 NYLNLSNNNLNGEIPSSTQLQSFDASSFAGN 846
           + L LSNN L     S   L + +    + N
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNN 265

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           +L  LDLS N    I        L NL+ L+LS    T + P     L +L+ LDLSG
Sbjct: 1   NLKSLDLSNNRLTVIP-DGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 59/246 (23%), Positives = 88/246 (35%), Gaps = 52/246 (21%)

Query: 89  LLELKHLVHLDLSGNDF---QGIQIPKYLASLVNLRYLNLSQARFTGM----IPHQLGNL 141
           L  +  LV +DLSGN        ++   +A++ NLR +N S A FTG     +   L  L
Sbjct: 26  LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVML 84

Query: 142 S-------NLQYLDLSGVYFELHA--ETISWLSGLSLLEHLYISFVNLSKASDSLLVINS 192
                    LQ +DLS   F      E    +S  + L HL ++   L   +   +   +
Sbjct: 85  LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KA 143

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLT-----SLKHL 247
           L  L   K             +A+   L  +    N+ +      L         +LK +
Sbjct: 144 LFHLAYNK------------KAADKPKLEVVICGRNRLE-NGSKELSAALLESHENLKEV 190

Query: 248 DLYSNQFNS------AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
            +  N          A LG L   + LEVL L+DN    + S         +   L  WN
Sbjct: 191 KIQQNGIRPEGVTMLAFLG-LFYSHSLEVLDLQDNTFTLEGSRY-------LADALCEWN 242

Query: 302 D--ELG 305
              EL 
Sbjct: 243 LLRELR 248

Length = 388

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ 229
           L+ L +S   L+   D       L +LK L LS   L      + +   SL +LDLSGN 
Sbjct: 2   LKSLDLSNNRLTVIPDGAF--KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 230 F 230
            
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 22/60 (36%), Positives = 26/60 (43%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           +LK L LS   L   P  +     +L  LDLSGN      P     L SL+ LDL  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 63/267 (23%), Positives = 103/267 (38%), Gaps = 21/267 (7%)

Query: 394 NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCH 453
            L SLDL +     ++     +     +  L    + +       +    LT L+L + +
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN 127

Query: 454 LGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSP 513
           +    PL   L+  L +LD+S  +I   +P    N       L++S N +          
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLP-NLKNLDLSFNDL---------- 175

Query: 514 SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWM 573
                +   L   S   L+N  LSG+    +         +E L LS N   E +     
Sbjct: 176 ---SDLPKLLSNLSN--LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSSLS 229

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
           N   L  L L NN     LP SIG L++L +L+L NN++S    +S  + + L  LD+  
Sbjct: 230 NLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSG 286

Query: 634 NELVGSIPTWIGERFSRLMILILRSNK 660
           N L  ++P          ++L L    
Sbjct: 287 NSLSNALPLIALLLLLLELLLNLLLTL 313

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 68/274 (24%), Positives = 118/274 (43%), Gaps = 24/274 (8%)

Query: 577 RLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
           RL +L+L + +   SL    ++  L  L SL+L  NRL   I       + L +LD+  N
Sbjct: 68  RLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDLDNN 126

Query: 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN 694
             +  IP  IG   S L  L L  NK     P  L  L +L+ LD+++N         ++
Sbjct: 127 -NITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFND--------LS 176

Query: 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMN--- 751
           +   + +  S+  + D+      D     +    ++   +  NSI+ L+ S+    N   
Sbjct: 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSG 236

Query: 752 -----NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806
                N   ++P  + NL  L++L+LS+N  +     ++G + ++  LD S N LS  +P
Sbjct: 237 LELSNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294

Query: 807 QSMS-NLSFLNYLNLSNNNLNGEIPSSTQLQSFD 839
                 L     LNL       E+  ++ L + +
Sbjct: 295 LIALLLLLLELLLNLLLTLKALELKLNSILLNNN 328

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 119 NLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFV 178
           NL+ L+LS  R T +       L NL+ LDLS     L + +    SGL  L  L +S  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLS--GNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 179 NL 180
           NL
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 33/109 (30%), Positives = 44/109 (40%), Gaps = 17/109 (15%)

Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSG 341
           I  LGLDN              L G IP    KL  L S +++   +  +I   LG  + 
Sbjct: 420 IDGLGLDN------------QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS 467

Query: 342 CVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
                LE L L      G +   LGQ   L  L L+ N + G +P +LG
Sbjct: 468 -----LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	931
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.68
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.65
PLN03150	623	hypothetical protein; Provisional	99.55
PLN03150	623	hypothetical protein; Provisional	99.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.3
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.23
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.21
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.68
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.64
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.59
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
PRK15386	426	type III secretion protein GogB; Provisional	98.04
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.91
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.79
KOG4341	483	consensus F-box protein containing LRR [General fu	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.57
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.51
KOG4341	483	consensus F-box protein containing LRR [General fu	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.43
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.12
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.86
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.85
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.84
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.68
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.6
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.46
KOG4308	478	consensus LRR-containing protein [Function unknown	94.8
KOG4308	478	consensus LRR-containing protein [Function unknown	94.12
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.01
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.73
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.28
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.74
smart00370	26	LRR Leucine-rich repeats, outliers.	87.74
smart00370	26	LRR Leucine-rich repeats, outliers.	87.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.31
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.84
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	83.7

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-69  Score=676.21  Aligned_cols=583  Identities=36%  Similarity=0.584  Sum_probs=395.5

Q ss_pred             CHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcCccceEecCCCCcEEEEEcCCCCCCCchhhhcccccceeecccccCc
Q 002360           13 IESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLEL   92 (931)
Q Consensus        13 ~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~w~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l   92 (931)
                      .++|++||++||.++.||...+++|. .+.+||.|.|++|++ .++|++|+++++            .+.|.++.++..+
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~~~~~w~-~~~~~c~w~gv~c~~-~~~v~~L~L~~~------------~i~~~~~~~~~~l   92 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLKYLSNWN-SSADVCLWQGITCNN-SSRVVSIDLSGK------------NISGKISSAIFRL   92 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcccCCCCC-CCCCCCcCcceecCC-CCcEEEEEecCC------------CccccCChHHhCC
Confidence            56899999999999988888899998 678999999999985 579999999986            6777888888888


Q ss_pred             cCCcEeeCCCCCCCCCCchhhhh-cCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCC
Q 002360           93 KHLVHLDLSGNDFQGIQIPKYLA-SLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLE  171 (931)
Q Consensus        93 ~~L~~L~Ls~n~~~~~~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~  171 (931)
                      ++|++|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+|.  +.+++|++|+|++|.+                 
T Consensus        93 ~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~-----------------  152 (968)
T PLN00113         93 PYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML-----------------  152 (968)
T ss_pred             CCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc-----------------
Confidence            8999999988888764 666544 888888888888888766664  3455555555554433                 


Q ss_pred             eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360          172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS  251 (931)
Q Consensus       172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  251 (931)
                                                         .+..+..+.++++|++|++++|.+.+.+|..++++++|++|++++
T Consensus       153 -----------------------------------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  197 (968)
T PLN00113        153 -----------------------------------SGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS  197 (968)
T ss_pred             -----------------------------------cccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence                                               222222333444444444444444444444444444444444444


Q ss_pred             CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCc
Q 002360          252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD  331 (931)
Q Consensus       252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  331 (931)
                      |.+.+..|..++.+++|++|++++|.+.+.+|.. ++.+++|++|++++| .+.+.+|..++++++|+            
T Consensus       198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~------------  263 (968)
T PLN00113        198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQ------------  263 (968)
T ss_pred             CCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCc-eeccccChhHhCCCCCC------------
Confidence            4444444444444444444444444444333333 334444444444444 33333333344433333            


Q ss_pred             chhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccch
Q 002360          332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE  411 (931)
Q Consensus       332 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  411 (931)
                                       +|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.++.
T Consensus       264 -----------------~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~  326 (968)
T PLN00113        264 -----------------YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV  326 (968)
T ss_pred             -----------------EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh
Confidence                             333444444444444444555555555555555555555555555666666655555433322


Q ss_pred             hhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccc
Q 002360          412 IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF  491 (931)
Q Consensus       412 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  491 (931)
                                                                       .+..+++|+.|++++|.+.+.+|..+..   
T Consensus       327 -------------------------------------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~---  354 (968)
T PLN00113        327 -------------------------------------------------ALTSLPRLQVLQLWSNKFSGEIPKNLGK---  354 (968)
T ss_pred             -------------------------------------------------hHhcCCCCCEEECcCCCCcCcCChHHhC---
Confidence                                                             1222333334444444433333322211   


Q ss_pred             cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCc
Q 002360          492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC  571 (931)
Q Consensus       492 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  571 (931)
                                                                                 +++|+.|++++|++++.+|..
T Consensus       355 -----------------------------------------------------------~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        355 -----------------------------------------------------------HNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             -----------------------------------------------------------CCCCcEEECCCCeeEeeCChh
Confidence                                                                       234555555555555555656


Q ss_pred             ccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcC
Q 002360          572 WMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRL  651 (931)
Q Consensus       572 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L  651 (931)
                      +..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..++.|+.|++++|.+++.+|..+. .+++|
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L  454 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSL  454 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCC
Confidence            66666666667777766666666666677777777777777766777777777777777777777766666655 57777


Q ss_pred             cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360          652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG  731 (931)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  731 (931)
                      +.|++++|++.+.+|..+ ..++|+.|++++|++++.+|..+.+++.|                                
T Consensus       455 ~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L--------------------------------  501 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL--------------------------------  501 (968)
T ss_pred             cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc--------------------------------
Confidence            777777777777777654 35788999999999998888877766655                                


Q ss_pred             chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360          732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  811 (931)
Q Consensus       732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~  811 (931)
                                  +.|+|++|++++.+|..++++++|++|+|++|.++|.+|..++.+++|+.|||++|++++.+|..+.+
T Consensus       502 ------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  569 (968)
T PLN00113        502 ------------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGN  569 (968)
T ss_pred             ------------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhc
Confidence                        78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCC
Q 002360          812 LSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAP  852 (931)
Q Consensus       812 l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~  852 (931)
                      +++|++|++++|+++|.+|..+++.++...++.|| .+||.+
T Consensus       570 l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        570 VESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             CcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999999999999999 799864

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.8e-56  Score=557.71  Aligned_cols=514  Identities=30%  Similarity=0.488  Sum_probs=375.3

Q ss_pred             CCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCccccccccccc-CCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360          219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS-KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL  297 (931)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  297 (931)
                      +++.|++++|.+.+.++..+..+++|+.|++++|++.+.+|..+. .+++|++|++++|.+.+.+|.   +.+++|++|+
T Consensus        70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~  146 (968)
T PLN00113         70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLD  146 (968)
T ss_pred             cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEE
Confidence            455555555555555555555555555555555555544443332 555555555555555544443   2345555555


Q ss_pred             ccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc
Q 002360          298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS  377 (931)
Q Consensus       298 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  377 (931)
                      +++| .+.+.+|..++++++|+.|++++|.+.+.+|..++.+     ++|++|++++|.+.+.+|..++.+++|++|+++
T Consensus       147 Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        147 LSNN-MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL-----TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CcCC-cccccCChHHhcCCCCCEEECccCcccccCChhhhhC-----cCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            5555 5555555555555566666666555555555555544     556666666666655556566666666666666


Q ss_pred             CCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCC
Q 002360          378 NNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR  457 (931)
Q Consensus       378 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~  457 (931)
                      +|.+.+.+|..++.+++|++|++++|.+++.+|. .+.++++|+.|++                        ++|.+.+.
T Consensus       221 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L------------------------~~n~l~~~  275 (968)
T PLN00113        221 YNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFL------------------------YQNKLSGP  275 (968)
T ss_pred             CCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEEC------------------------cCCeeecc
Confidence            6666666666666666666666666666555544 3444444333333                        33333334


Q ss_pred             cChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCc
Q 002360          458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALS  537 (931)
Q Consensus       458 ~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~  537 (931)
                      +|..+..+++|+.|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|.                            
T Consensus       276 ~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~----------------------------  326 (968)
T PLN00113        276 IPPSIFSLQKLISLDLSDNSLSGEIPELVI-QLQNLEILHLFSNNFTGKIPV----------------------------  326 (968)
T ss_pred             CchhHhhccCcCEEECcCCeeccCCChhHc-CCCCCcEEECCCCccCCcCCh----------------------------
Confidence            455555556666666666666555554442 244455555555544433331                            


Q ss_pred             cccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc
Q 002360          538 GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP  617 (931)
Q Consensus       538 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  617 (931)
                           .    +..+++|+.|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|
T Consensus       327 -----~----~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p  397 (968)
T PLN00113        327 -----A----LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP  397 (968)
T ss_pred             -----h----HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence                 1    1225789999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccc
Q 002360          618 TSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS  697 (931)
Q Consensus       618 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  697 (931)
                      ..+..+++|+.|++++|++++.+|..+. .+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+. . 
T Consensus       398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~-  474 (968)
T PLN00113        398 KSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-S-  474 (968)
T ss_pred             HHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-c-
Confidence            9999999999999999999999998876 799999999999999999999999999999999999999998887542 1 


Q ss_pred             cccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcC
Q 002360          698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLF  777 (931)
Q Consensus       698 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  777 (931)
                                                                 +.|+.||+++|++++.+|..+..+++|++|+|++|++
T Consensus       475 -------------------------------------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  511 (968)
T PLN00113        475 -------------------------------------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKL  511 (968)
T ss_pred             -------------------------------------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcc
Confidence                                                       2358999999999999999999999999999999999


Q ss_pred             cccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC-CccCcccccccCCCCCCC
Q 002360          778 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFDASSFAGNDLCG  850 (931)
Q Consensus       778 ~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~~~~~~~~~~~n~l~~  850 (931)
                      ++.+|..++.+++|++|++++|.+++.+|..+..+++|+.||+++|+++|.+|.. ..+..+...++++|.+.|
T Consensus       512 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        512 SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            9999999999999999999999999999999999999999999999999999975 456667778888886654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-36  Score=315.29  Aligned_cols=228  Identities=22%  Similarity=0.258  Sum_probs=128.6

Q ss_pred             CEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcC
Q 002360          245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA  324 (931)
Q Consensus       245 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  324 (931)
                      +.|++++|.+....+..|.++++|+.+++..|.++ .||.. .+...+|+.|+|.+| .++..-.+.+..++.|+.++++
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF-GHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc-cccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence            33444444444444444444444444444444443 34432 222233444444444 3333333334444444444444


Q ss_pred             CCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCc
Q 002360          325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNK  404 (931)
Q Consensus       325 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  404 (931)
                      .|.++......+..-     .++++|+|++|.|+..-...|..+.+|..|.|+.|.++...+..|..+++|+.|+|..|.
T Consensus       158 rN~is~i~~~sfp~~-----~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAK-----VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hchhhcccCCCCCCC-----CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            444433222222221     456677777777766666666777777777777777775555666667777777777777


Q ss_pred             CCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCC
Q 002360          405 LNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDK  481 (931)
Q Consensus       405 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~  481 (931)
                      |. .+....|.++++|+.+.+..|.+....+..|..+.++++|+|..|++...-.+|+.++++|+.|++|+|.|..+
T Consensus       233 ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri  308 (873)
T KOG4194|consen  233 IR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI  308 (873)
T ss_pred             ee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence            64 34344666677777777777766666666666666666666666666666666666666666666666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=5e-36  Score=312.43  Aligned_cols=373  Identities=21%  Similarity=0.203  Sum_probs=298.2

Q ss_pred             cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceec
Q 002360          345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFL  424 (931)
Q Consensus       345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  424 (931)
                      +.-+.|++++|.+..+-+..|.++++|+++.+.+|.++ .+|...+...+|+.|+|.+|.|+ .+....++.++.|+.++
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            55678999999998888888899999999999999988 67765555666999999999987 55555889999999999


Q ss_pred             cCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccc
Q 002360          425 ANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY  504 (931)
Q Consensus       425 l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~  504 (931)
                      ++.|.+.....+.|..-.++++|+|++|.++..-...|..+.+|..|.|++|+|+. +|...|..+++|+.|+|..|++.
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchhhhhhcccccee
Confidence            99999999888888888899999999999998888889999999999999999985 56666666888888888888774


Q ss_pred             cCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecC
Q 002360          505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLG  584 (931)
Q Consensus       505 ~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  584 (931)
                      -.-                                     .-.+..+++|+.|.|..|.+...-...|..+.++++|+|+
T Consensus       235 ive-------------------------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  235 IVE-------------------------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE  277 (873)
T ss_pred             eeh-------------------------------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence            110                                     0012236788889999999988778888889999999999


Q ss_pred             CCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc
Q 002360          585 NNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD  664 (931)
Q Consensus       585 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~  664 (931)
                      .|++...-..++-++++|+.|++++|.|..+-++++..+++|++|+|++|+++ .+++.-+..+.+|++|+|++|.+...
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHH
Confidence            99998777788888999999999999999888888888999999999999998 67776666788999999999998877


Q ss_pred             CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhcccee
Q 002360          665 FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVR  744 (931)
Q Consensus       665 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  744 (931)
                      -...|..+++|+.|||++|.+++.+-+.-.-..                                         .++.|+
T Consensus       357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-----------------------------------------gl~~Lr  395 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-----------------------------------------GLPSLR  395 (873)
T ss_pred             HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-----------------------------------------cchhhh
Confidence            777888889999999999998876654211111                                         134456


Q ss_pred             EEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCc
Q 002360          745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ  800 (931)
Q Consensus       745 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  800 (931)
                      .|+|.+|++....-..|.++..|++|||.+|.|....|.+|..| .|+.|-+..-.
T Consensus       396 kL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  396 KLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             heeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            77777777775555667777777777777777776777777776 66666655433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.3e-39  Score=321.11  Aligned_cols=480  Identities=25%  Similarity=0.366  Sum_probs=286.1

Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360          218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL  297 (931)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  297 (931)
                      ..|+.+.+++|.+. .+.+.+.++..|.+|++.+|++.. .|.+++.+..++.++.++|+++ .+|.. ++.+.++..++
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~-i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQ-IGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHH-Hhhhhhhhhhh
Confidence            44555555555554 223335555555555555555533 3444555555555555555554 44444 55555555555


Q ss_pred             ccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc
Q 002360          298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS  377 (931)
Q Consensus       298 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  377 (931)
                      .++| .+. .+|+.++.+..+..++..+|+++.. |+.+..+     .++..+++.+|++....|.-+. ++.|++||..
T Consensus       121 ~s~n-~~~-el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~-----~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  121 CSSN-ELK-ELPDSIGRLLDLEDLDATNNQISSL-PEDMVNL-----SKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             cccc-cee-ecCchHHHHhhhhhhhccccccccC-chHHHHH-----HHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence            5555 322 3444555555555555555555533 2333333     4566666666666655554444 6777777777


Q ss_pred             CCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCC
Q 002360          378 NNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR  457 (931)
Q Consensus       378 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~  457 (931)
                      .|.+. .+|..++.+.+|+.|++..|++. .+|  .|.+|..|+++.+..|.+.                         .
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP--ef~gcs~L~Elh~g~N~i~-------------------------~  242 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP--EFPGCSLLKELHVGENQIE-------------------------M  242 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC--CCCccHHHHHHHhcccHHH-------------------------h
Confidence            76665 56667777777777777777765 333  3455555544444444332                         2


Q ss_pred             cCh-hhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCC
Q 002360          458 FPL-WLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNAL  536 (931)
Q Consensus       458 ~~~-~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l  536 (931)
                      +|. ...++.++..||+.+|++.. .|....- +.+|++||+|+|.+++-.                             
T Consensus       243 lpae~~~~L~~l~vLDLRdNklke-~Pde~cl-LrsL~rLDlSNN~is~Lp-----------------------------  291 (565)
T KOG0472|consen  243 LPAEHLKHLNSLLVLDLRDNKLKE-VPDEICL-LRSLERLDLSNNDISSLP-----------------------------  291 (565)
T ss_pred             hHHHHhcccccceeeecccccccc-CchHHHH-hhhhhhhcccCCccccCC-----------------------------
Confidence            222 22355566666666666653 3333221 334444444444443221                             


Q ss_pred             ccccchhhhccCCCCCCccEEECcCCccccccCCcccC-----CCCCCE----EecCCCcc---e-ec-CCC---cccCC
Q 002360          537 SGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN-----WPRLRT----LNLGNNNF---T-GS-LPM---SIGTL  599 (931)
Q Consensus       537 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~----L~Ls~n~l---~-~~-~p~---~~~~l  599 (931)
                               ..++++ .|+.|.+.+|.+..+-.+.+.+     ++.|+.    =-++.-.-   + +. .+.   ....+
T Consensus       292 ---------~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  292 ---------YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             ---------cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence                     223334 5666666666654321111110     001110    00000000   0 00 011   12234


Q ss_pred             CCCCEEEccCCcCccccchhhccCC--CCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCE
Q 002360          600 TSLRSLNLRNNRLSGVIPTSFKNFS--ILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQI  677 (931)
Q Consensus       600 ~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  677 (931)
                      .+.+.|++++-+++.+..+.|...+  -....+++.|++. .+|..+. .+..+...-+.+|+..+.+|..++.+++|..
T Consensus       362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~isfv~~~l~~l~kLt~  439 (565)
T KOG0472|consen  362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKISFVPLELSQLQKLTF  439 (565)
T ss_pred             hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCccccchHHHHhhhccee
Confidence            5778888888888855444444332  3778899999987 7888776 4555544433444444478888899999999


Q ss_pred             EEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360          678 LDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI  757 (931)
Q Consensus       678 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i  757 (931)
                      |+|++|.+. .+|..++.+..|                                            +.||+|+|+|. .+
T Consensus       440 L~L~NN~Ln-~LP~e~~~lv~L--------------------------------------------q~LnlS~NrFr-~l  473 (565)
T KOG0472|consen  440 LDLSNNLLN-DLPEEMGSLVRL--------------------------------------------QTLNLSFNRFR-ML  473 (565)
T ss_pred             eecccchhh-hcchhhhhhhhh--------------------------------------------heecccccccc-cc
Confidence            999888876 778777766555                                            88999999998 88


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      |+.+-.+..++.+-.++|++....|+.+.+|.+|..|||.+|.+. .||..++++++|+.|++++|++.  .|.
T Consensus       474 P~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr  544 (565)
T KOG0472|consen  474 PECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPR  544 (565)
T ss_pred             hHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCH
Confidence            988888888888888889998666666999999999999999998 78889999999999999999997  454

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-39  Score=321.26  Aligned_cols=498  Identities=25%  Similarity=0.359  Sum_probs=270.6

Q ss_pred             ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360           89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS  168 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~  168 (931)
                      ...-.-+..|++++|.+..  +.+.+.++..|.+|++++|.++ .+|.+++.+..++.|+.++|.+..+|+.+   ..+.
T Consensus        41 wW~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i---~s~~  114 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQI---GSLI  114 (565)
T ss_pred             hhhhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHH---hhhh
Confidence            3445567788888888873  4667888888888888888887 78888888888888888888887777654   4455


Q ss_pred             CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360          169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD  248 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  248 (931)
                      .|+++++++|.+...++.   ++.+..|..++..+|+++..++ ++..+.+|..+++.+|.+....|..+ .++.|++|+
T Consensus       115 ~l~~l~~s~n~~~el~~~---i~~~~~l~dl~~~~N~i~slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld  189 (565)
T KOG0472|consen  115 SLVKLDCSSNELKELPDS---IGRLLDLEDLDATNNQISSLPE-DMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLD  189 (565)
T ss_pred             hhhhhhccccceeecCch---HHHHhhhhhhhccccccccCch-HHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcc
Confidence            555566666655554432   3344455555555555555444 33444455555555555553322222 255555555


Q ss_pred             cCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcC
Q 002360          249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL  328 (931)
Q Consensus       249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l  328 (931)
                      ...|.+ +.+|..++.+.+|+.|++..|++. .+|                           .|+++..|++++++.|.+
T Consensus       190 ~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP---------------------------ef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  190 CNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP---------------------------EFPGCSLLKELHVGENQI  240 (565)
T ss_pred             cchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC---------------------------CCCccHHHHHHHhcccHH
Confidence            555544 223444555555555555555443 333                           344444444444444444


Q ss_pred             CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCc
Q 002360          329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT  408 (931)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  408 (931)
                      .-...+....+     +++..||+.+|+++ ..|..+..+++|.+||+++|.++ ..|..++++ .|+.|.+.+|.+. .
T Consensus       241 ~~lpae~~~~L-----~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-T  311 (565)
T KOG0472|consen  241 EMLPAEHLKHL-----NSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-T  311 (565)
T ss_pred             HhhHHHHhccc-----ccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-H
Confidence            32222222233     55666666666663 34555556666677777777666 445566666 6666666666654 2


Q ss_pred             cchhhhccccc--cceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhH
Q 002360          409 VSEIHFVNLTK--LVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF  486 (931)
Q Consensus       409 ~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~  486 (931)
                      +....+..-+.  |++|                                             +. .+..-+++       
T Consensus       312 iRr~ii~~gT~~vLKyL---------------------------------------------rs-~~~~dglS-------  338 (565)
T KOG0472|consen  312 IRREIISKGTQEVLKYL---------------------------------------------RS-KIKDDGLS-------  338 (565)
T ss_pred             HHHHHHcccHHHHHHHH---------------------------------------------HH-hhccCCCC-------
Confidence            21111110000  0000                                             00 00000000       


Q ss_pred             HhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccc
Q 002360          487 WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE  566 (931)
Q Consensus       487 ~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~  566 (931)
                                   .- -.|.....                   +.         +...........+.+.|++++-+++.
T Consensus       339 -------------~s-e~~~e~~~-------------------t~---------~~~~~~~~~~~i~tkiL~~s~~qlt~  376 (565)
T KOG0472|consen  339 -------------QS-EGGTETAM-------------------TL---------PSESFPDIYAIITTKILDVSDKQLTL  376 (565)
T ss_pred             -------------CC-cccccccC-------------------CC---------CCCcccchhhhhhhhhhccccccccc
Confidence                         00 00000000                   00         00000000011234445555544444


Q ss_pred             ccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcE-EecCCCcccccCchhHH
Q 002360          567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEA-LDVGENELVGSIPTWIG  645 (931)
Q Consensus       567 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~-L~L~~N~l~~~~p~~~~  645 (931)
                      +..+.|... .                     -.-....++++|++. .+|..+..++.+.+ +++++|.+. .+|..+.
T Consensus       377 VPdEVfea~-~---------------------~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~  432 (565)
T KOG0472|consen  377 VPDEVFEAA-K---------------------SEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELS  432 (565)
T ss_pred             CCHHHHHHh-h---------------------hcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHH
Confidence            222222211 1                     011334445555544 34444444433332 344444443 5555554


Q ss_pred             hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360          646 ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT  725 (931)
Q Consensus       646 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (931)
                       .+++|..|+|++|.+. .+|..++.+..||.||+|.|+|. .+|.++..+..+                          
T Consensus       433 -~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l--------------------------  483 (565)
T KOG0472|consen  433 -QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL--------------------------  483 (565)
T ss_pred             -hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH--------------------------
Confidence             5677777777766665 56777777777888888888776 666665544433                          


Q ss_pred             eEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                                        +.+-.++|++....|..+.++..|.+|||.+|.+. .||..+++|++|++|++++|++.
T Consensus       484 ------------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  484 ------------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ------------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence                              34445667777555555888899999999999988 88888999999999999999987

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=325.71  Aligned_cols=243  Identities=26%  Similarity=0.396  Sum_probs=187.9

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL  605 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  605 (931)
                      ++++|+++|++++. |++++.    +.+|+.++..+|+++. +|..+...++|+.|.+..|.+. .+|....+.++|++|
T Consensus       243 l~~~dis~n~l~~l-p~wi~~----~~nle~l~~n~N~l~~-lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tL  315 (1081)
T KOG0618|consen  243 LQYLDISHNNLSNL-PEWIGA----CANLEALNANHNRLVA-LPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTL  315 (1081)
T ss_pred             ceeeecchhhhhcc-hHHHHh----cccceEecccchhHHh-hHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeee
Confidence            34444444444432 244433    7889999999999965 6777777889999999999988 677778888999999


Q ss_pred             EccCCcCccccchhhccCCC-CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360          606 NLRNNRLSGVIPTSFKNFSI-LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS  684 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  684 (931)
                      +|..|++....+..+.-... |+.|..+.|++. ..|..-....+.|+.|.+.+|.++...-..+.++++|+.|+|++|+
T Consensus       316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr  394 (1081)
T KOG0618|consen  316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR  394 (1081)
T ss_pred             eehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence            99999998544444444433 788888888887 6665444567789999999999998876778889999999999999


Q ss_pred             cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      +......++.++..|                                            +.|+||+|+++ .+|..+..+
T Consensus       395 L~~fpas~~~kle~L--------------------------------------------eeL~LSGNkL~-~Lp~tva~~  429 (1081)
T KOG0618|consen  395 LNSFPASKLRKLEEL--------------------------------------------EELNLSGNKLT-TLPDTVANL  429 (1081)
T ss_pred             cccCCHHHHhchHHh--------------------------------------------HHHhcccchhh-hhhHHHHhh
Confidence            974433455555544                                            78999999998 788999999


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-cccccCCCCCCeeeCCCcc
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNN  824 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~  824 (931)
                      ..|++|...+|++. ..| .+..+++|+.+|+|.|+|+... |..... ++|++||+++|.
T Consensus       430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            99999999999998 777 6899999999999999998653 443333 889999999996

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-34  Score=314.11  Aligned_cols=498  Identities=27%  Similarity=0.341  Sum_probs=281.0

Q ss_pred             eeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcc
Q 002360           83 GKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETIS  162 (931)
Q Consensus        83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~  162 (931)
                      ..||..+..-.++..|+++.|-+-..+ -+++.+..+|+.||+++|.+. ..|..+..+.+|+.|+++.|.|..+|..  
T Consensus        11 ~~ip~~i~~~~~~~~ln~~~N~~l~~p-l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp~s--   86 (1081)
T KOG0618|consen   11 ELIPEQILNNEALQILNLRRNSLLSRP-LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVPSS--   86 (1081)
T ss_pred             cccchhhccHHHHHhhhccccccccCc-hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCchh--
Confidence            345555555555677777777665432 234444555777777777766 6677777777777777777777777643  


Q ss_pred             ccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCC
Q 002360          163 WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLT  242 (931)
Q Consensus       163 ~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  242 (931)
                       ..++.+|+++.|..|.+...|.   .+..+.+|+.|++++|.+..+|. .+..+..++.++.++|.....    ++...
T Consensus        87 -~~~~~~l~~lnL~~n~l~~lP~---~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~----lg~~~  157 (1081)
T KOG0618|consen   87 -CSNMRNLQYLNLKNNRLQSLPA---SISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQR----LGQTS  157 (1081)
T ss_pred             -hhhhhcchhheeccchhhcCch---hHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhh----hcccc
Confidence             4667777777777777666654   34566777777777777766665 455566667777777722212    22222


Q ss_pred             CCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEE
Q 002360          243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFS  322 (931)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  322 (931)
                       ++.+++..|.+.+.++..+..++.  .|+|.+|.+. ..   .+.++.+|+.|....| .              |..+.
T Consensus       158 -ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn-~--------------ls~l~  215 (1081)
T KOG0618|consen  158 -IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERN-Q--------------LSELE  215 (1081)
T ss_pred             -chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhc-c--------------cceEE
Confidence             677777777777766666666655  6777777664 11   1556666666666655 2              12222


Q ss_pred             cCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccC
Q 002360          323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN  402 (931)
Q Consensus       323 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  402 (931)
                      +.+                   ++++.|+..+|.++...+.  ..-.+|++++++.|.+. .+|++++.+++|+.+++.+
T Consensus       216 ~~g-------------------~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~  273 (1081)
T KOG0618|consen  216 ISG-------------------PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANH  273 (1081)
T ss_pred             ecC-------------------cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccc
Confidence            211                   5566666666666533221  12346777777777776 4456777777777777777


Q ss_pred             CcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCc
Q 002360          403 NKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKI  482 (931)
Q Consensus       403 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  482 (931)
                      |.++ .+|. .+...++|+.+....|.+.                         .+|......+.|+.|++..|.+.. .
T Consensus       274 N~l~-~lp~-ri~~~~~L~~l~~~~nel~-------------------------yip~~le~~~sL~tLdL~~N~L~~-l  325 (1081)
T KOG0618|consen  274 NRLV-ALPL-RISRITSLVSLSAAYNELE-------------------------YIPPFLEGLKSLRTLDLQSNNLPS-L  325 (1081)
T ss_pred             hhHH-hhHH-HHhhhhhHHHHHhhhhhhh-------------------------hCCCcccccceeeeeeehhccccc-c
Confidence            7774 3443 3444555555555554433                         234444455666666666666653 3


Q ss_pred             chhHHhccc-cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcC
Q 002360          483 PRAFWNSIF-QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLST  561 (931)
Q Consensus       483 ~~~~~~~~~-~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~  561 (931)
                      |..++.... ++..|+.+.|++... |....        ...+.++.+.+.+|.+++.....+    .+.+.|+.|+|++
T Consensus       326 p~~~l~v~~~~l~~ln~s~n~l~~l-p~~~e--------~~~~~Lq~LylanN~Ltd~c~p~l----~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  326 PDNFLAVLNASLNTLNVSSNKLSTL-PSYEE--------NNHAALQELYLANNHLTDSCFPVL----VNFKHLKVLHLSY  392 (1081)
T ss_pred             chHHHhhhhHHHHHHhhhhcccccc-ccccc--------hhhHHHHHHHHhcCcccccchhhh----ccccceeeeeecc
Confidence            333333322 255555555555311 10000        011344455555555554433322    2245666666666


Q ss_pred             CccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccccc-C
Q 002360          562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS-I  640 (931)
Q Consensus       562 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~  640 (931)
                      |++.......+.++..|++|+||+|+++ .+|..+..+..|++|...+|++. ..| .+..++.|+.+|++.|+++.. +
T Consensus       393 NrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l  469 (1081)
T KOG0618|consen  393 NRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTL  469 (1081)
T ss_pred             cccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhh
Confidence            6666555555666666666666666666 55566666666666666666665 444 556666666666666666522 2


Q ss_pred             chhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360          641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN  683 (931)
Q Consensus       641 p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  683 (931)
                      |...  .-++|++||+++|.-...-...+..+..+...++.-|
T Consensus       470 ~~~~--p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  470 PEAL--PSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhC--CCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            2211  1256666666666532222233444455555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=2.1e-31  Score=279.51  Aligned_cols=386  Identities=24%  Similarity=0.364  Sum_probs=240.8

Q ss_pred             CCCCccEEEccCCCCCc-ccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCC
Q 002360          289 NLTSIQKLLLSWNDELG-GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ  367 (931)
Q Consensus       289 ~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  367 (931)
                      -++-.+-.++++| .++ +..|.....+++++.|.+...++. .+|+.++.+     .+|++|.+.+|++.... ..+..
T Consensus         5 VLpFVrGvDfsgN-DFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l-----qkLEHLs~~HN~L~~vh-GELs~   76 (1255)
T KOG0444|consen    5 VLPFVRGVDFSGN-DFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL-----QKLEHLSMAHNQLISVH-GELSD   76 (1255)
T ss_pred             ccceeecccccCC-cCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH-----hhhhhhhhhhhhhHhhh-hhhcc
Confidence            4555566677777 554 466666667777777766666554 345555555     56666666666654322 23455


Q ss_pred             CCCCCEEeccCCcCCc-CccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccE
Q 002360          368 FKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV  446 (931)
Q Consensus       368 l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~  446 (931)
                      ++.|+.+++..|++.. -+|..+-.+..|+.|||++|++.                                        
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~----------------------------------------  116 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR----------------------------------------  116 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh----------------------------------------
Confidence            6666666666665532 24445555666666666666654                                        


Q ss_pred             EEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccc
Q 002360          447 LELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG  526 (931)
Q Consensus       447 L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l  526 (931)
                                ..|..+..-+++-.|+||+|+|. .+|..++-++..|-+||||+|++....|.                 
T Consensus       117 ----------EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ-----------------  168 (1255)
T KOG0444|consen  117 ----------EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ-----------------  168 (1255)
T ss_pred             ----------hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH-----------------
Confidence                      33444455566667777777775 46666666666777777777766432221                 


Q ss_pred             cEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcce-ecCCCcccCCCCCCEE
Q 002360          527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT-GSLPMSIGTLTSLRSL  605 (931)
Q Consensus       527 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L  605 (931)
                                           ...+..|++|+|++|.+...--..+..+++|++|.+++.+-+ .-+|.++..+.+|..+
T Consensus       169 ---------------------~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv  227 (1255)
T KOG0444|consen  169 ---------------------IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV  227 (1255)
T ss_pred             ---------------------HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence                                 112345666666666554433334445566666666666544 2366666677777777


Q ss_pred             EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360          606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL  685 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  685 (931)
                      +++.|.+. ..|+.+.++.+|+.|+||+|+++ .+..... ...+|+.|+++.|+++ .+|.+++.++.|+.|.+.+|++
T Consensus       228 DlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  228 DLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKL  303 (1255)
T ss_pred             cccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcc
Confidence            77777766 56677777777777777777776 4544444 3566777777777776 5677777777777777777776


Q ss_pred             cc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          686 LG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       686 ~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      .- -+|..++.+.+|                                            +.+..++|.+. ..|+.+..+
T Consensus       304 ~FeGiPSGIGKL~~L--------------------------------------------evf~aanN~LE-lVPEglcRC  338 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQL--------------------------------------------EVFHAANNKLE-LVPEGLCRC  338 (1255)
T ss_pred             cccCCccchhhhhhh--------------------------------------------HHHHhhccccc-cCchhhhhh
Confidence            52 356666666555                                            44556667665 778888888


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCC
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  821 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  821 (931)
                      ..|+.|.|++|++. .+|+.+.-|+.|+.||+..|.-....|.--..-++|+.-|+.
T Consensus       339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             HHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            88888888888887 788888888888888888887553333221222455544443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.95  E-value=9.9e-31  Score=274.43  Aligned_cols=371  Identities=27%  Similarity=0.383  Sum_probs=284.2

Q ss_pred             CCCCCEEEccCCcCC-CCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccE
Q 002360          217 FSSLTTLDLSGNQFQ-GQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQK  295 (931)
Q Consensus       217 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~  295 (931)
                      ++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|..++.+.+|++|.+++|++. .+-.. +..++.|+.
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~LRs   82 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRLRS   82 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhhHH
Confidence            445566777888877 467788888888888888887774 45788888888888888888876 33333 778888888


Q ss_pred             EEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEe
Q 002360          296 LLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLG  375 (931)
Q Consensus       296 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  375 (931)
                      +.+..|..-...+|..+..+..|+.+++++|++.. .|..+...     .++..|+|++|+|..+....|.+++.|-.||
T Consensus        83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E-vP~~LE~A-----Kn~iVLNLS~N~IetIPn~lfinLtDLLfLD  156 (1255)
T KOG0444|consen   83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE-VPTNLEYA-----KNSIVLNLSYNNIETIPNSLFINLTDLLFLD  156 (1255)
T ss_pred             HhhhccccccCCCCchhcccccceeeecchhhhhh-cchhhhhh-----cCcEEEEcccCccccCCchHHHhhHhHhhhc
Confidence            88888844456788888889999999999998874 45555554     7888999999999776666678889999999


Q ss_pred             ccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCC-
Q 002360          376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL-  454 (931)
Q Consensus       376 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l-  454 (931)
                      |++|.+. .+|..+..+..|++|+|++|.+.- ..-..+..+++|+                        +|.+++.+- 
T Consensus       157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h-fQLrQLPsmtsL~------------------------vLhms~TqRT  210 (1255)
T KOG0444|consen  157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH-FQLRQLPSMTSLS------------------------VLHMSNTQRT  210 (1255)
T ss_pred             cccchhh-hcCHHHHHHhhhhhhhcCCChhhH-HHHhcCccchhhh------------------------hhhcccccch
Confidence            9999988 667788888999999999998741 1111223333344                        444444332 


Q ss_pred             CCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccC
Q 002360          455 GPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNN  534 (931)
Q Consensus       455 ~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n  534 (931)
                      ...+|..+..+.+|..+|+|.|.+. ..|..++. +++|+.|+||+|+++..--                          
T Consensus       211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~iteL~~--------------------------  262 (1255)
T KOG0444|consen  211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKITELNM--------------------------  262 (1255)
T ss_pred             hhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCceeeeec--------------------------
Confidence            2357788888889999999998886 56666654 6788888888888762110                          


Q ss_pred             CCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCccee-cCCCcccCCCCCCEEEccCCcCc
Q 002360          535 ALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTG-SLPMSIGTLTSLRSLNLRNNRLS  613 (931)
Q Consensus       535 ~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~  613 (931)
                                  ..+...+|++|++|.|+++. +|+++++++.|+.|.+.+|+++- -+|..++.+..|+++..++|.+.
T Consensus       263 ------------~~~~W~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  263 ------------TEGEWENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             ------------cHHHHhhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence                        01124678999999999986 88999999999999999998873 37889999999999999999987


Q ss_pred             cccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC
Q 002360          614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP  666 (931)
Q Consensus       614 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  666 (931)
                       ..|+.+..|..|+.|.|+.|.+. ++|+.+- -++.|+.||+..|.-..-.|
T Consensus       330 -lVPEglcRC~kL~kL~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  330 -LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             -cCchhhhhhHHHHHhccccccee-echhhhh-hcCCcceeeccCCcCccCCC
Confidence             78999999999999999999998 8998886 68999999999988653333

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=3.2e-26  Score=229.34  Aligned_cols=426  Identities=23%  Similarity=0.201  Sum_probs=238.4

Q ss_pred             cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccC-CcCCCccchhhhcccccccee
Q 002360          345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN-NKLNGTVSEIHFVNLTKLVSF  423 (931)
Q Consensus       345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L  423 (931)
                      +.-.+++|..|+|+.+.+.+|..+++|+.|||++|.|+.+.|.+|.++++|.+|.+.+ |+|+ .++...|.++..++.|
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence            6788999999999999999999999999999999999999999999999998888887 7776 7788899999999999


Q ss_pred             ccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC-CCcchhHHhccccceEEeccCcc
Q 002360          424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS-DKIPRAFWNSIFQYYYLNVSGNQ  502 (931)
Q Consensus       424 ~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~-~~~~~~~~~~~~~L~~L~ls~n~  502 (931)
                      .+..|.+.......+..++++..|.+.+|.+....-..+..+..++.+.+..|.+- +-.-.+...        ++.-|.
T Consensus       146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~--------~~a~~~  217 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD--------DLAMNP  217 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh--------HHhhch
Confidence            99999888877777777777777777777776555556677777777777766632 111011000        000000


Q ss_pred             cccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCCCCCCEE
Q 002360          503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTL  581 (931)
Q Consensus       503 l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L  581 (931)
                      +..               ..+....-..+.++++...-...+-..   ..++..=-.+.+...++.| .+|..+++|+.|
T Consensus       218 iet---------------sgarc~~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l  279 (498)
T KOG4237|consen  218 IET---------------SGARCVSPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKL  279 (498)
T ss_pred             hhc---------------ccceecchHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence            000               000000000111111111100000000   0011110111222222222 356666677777


Q ss_pred             ecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccc
Q 002360          582 NLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF  661 (931)
Q Consensus       582 ~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l  661 (931)
                      +|++|+++++-+.+|.+...+++|+|..|++..+....|.+++.|++|+|.+|+|+..-| ..|+.+.+|..|++-.|.+
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-GAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-ccccccceeeeeehccCcc
Confidence            777777766666666666667777777776666655666666666666666666663333 3333566666666666665


Q ss_pred             cccCCcccCCCCCcCEEEccCCccccccCccc--cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhh
Q 002360          662 HGDFPIQLCRLASLQILDVAYNSLLGTIPRCI--NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSI  739 (931)
Q Consensus       662 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  739 (931)
                      ...-     .+..|.. .|..+.-. ..|+|-  +.+..+..-+..+......        -.++......+..+..   
T Consensus       359 ~CnC-----~l~wl~~-Wlr~~~~~-~~~~Cq~p~~~~~~~~~dv~~~~~~c~--------~~ee~~~~~s~~cP~~---  420 (498)
T KOG4237|consen  359 NCNC-----RLAWLGE-WLRKKSVV-GNPRCQSPGFVRQIPISDVAFGDFRCG--------GPEELGCLTSSPCPPP---  420 (498)
T ss_pred             cCcc-----chHHHHH-HHhhCCCC-CCCCCCCCchhccccchhccccccccC--------CccccCCCCCCCCCCC---
Confidence            4221     0000000 11122211 122211  1111111111000000000        0000000000000000   


Q ss_pred             ccce-eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCee
Q 002360          740 LNLV-RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  818 (931)
Q Consensus       740 ~~~L-~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  818 (931)
                      .+-+ +...-|++.++ .+|..+-  ..-.+|++.+|.++ .+|+.  .+.+| .+|+|+|+++..--..|.++++|.+|
T Consensus       421 c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tl  493 (498)
T KOG4237|consen  421 CTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTL  493 (498)
T ss_pred             cchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhhee
Confidence            0011 11223444443 3443322  23457899999998 88886  67888 89999999987777889999999999


Q ss_pred             eCCCc
Q 002360          819 NLSNN  823 (931)
Q Consensus       819 ~ls~N  823 (931)
                      -+|||
T Consensus       494 ilsyn  498 (498)
T KOG4237|consen  494 ILSYN  498 (498)
T ss_pred             EEecC
Confidence            99987

>PLN03210 Resistant to P

Probab=99.87  E-value=6.3e-21  Score=237.84  Aligned_cols=347  Identities=20%  Similarity=0.267  Sum_probs=182.7

Q ss_pred             cccCCCCCCcEEEcCCCcC------CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCc
Q 002360          310 TSFGKLCKLTSFSMASTKL------SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG  383 (931)
Q Consensus       310 ~~~~~l~~L~~L~l~~~~l------~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  383 (931)
                      ..|.++++|+.|.+..+..      ...+|..+..++    .+|+.|++.++.+. .+|..+ ...+|+.|++.+|.+. 
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp----~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-  624 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP----PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-  624 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcC----cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-
Confidence            3456666666666654422      112233332221    35666666666553 334444 3456666666666655 


Q ss_pred             CccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhh
Q 002360          384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQ  463 (931)
Q Consensus       384 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~  463 (931)
                      .++..+..+++|+.|+++++...+.+|.                          +..+++|+.|++++|.....+|..+.
T Consensus       625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--------------------------ls~l~~Le~L~L~~c~~L~~lp~si~  678 (1153)
T PLN03210        625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--------------------------LSMATNLETLKLSDCSSLVELPSSIQ  678 (1153)
T ss_pred             ccccccccCCCCCEEECCCCCCcCcCCc--------------------------cccCCcccEEEecCCCCccccchhhh
Confidence            3445555666666666666543333332                          22234566666666665566777777


Q ss_pred             ccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchh
Q 002360          464 LQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHL  543 (931)
Q Consensus       464 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~  543 (931)
                      .+++|+.|++++|...+.+|...  .+++|+.|++++|...+.+|..                                 
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---------------------------------  723 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---------------------------------  723 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---------------------------------
Confidence            77777777777765444444432  2344444544444322222110                                 


Q ss_pred             hhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccC
Q 002360          544 ICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF  623 (931)
Q Consensus       544 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l  623 (931)
                             .++|+.|++++|.+.. +|..+ .+++|+.|++.++... .++..                +....+..+...
T Consensus       724 -------~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~-~l~~~----------------~~~l~~~~~~~~  777 (1153)
T PLN03210        724 -------STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSE-KLWER----------------VQPLTPLMTMLS  777 (1153)
T ss_pred             -------cCCcCeeecCCCcccc-ccccc-cccccccccccccchh-hcccc----------------ccccchhhhhcc
Confidence                   2345555555555543 33322 3455555555443321 01000                011111112233


Q ss_pred             CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccC
Q 002360          624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATAD  703 (931)
Q Consensus       624 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~  703 (931)
                      ++|+.|++++|...+.+|.++. ++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..           
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~-----------  844 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI-----------  844 (1153)
T ss_pred             ccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------
Confidence            5566666666665556666654 56666666666665444555544 5666666666666544333321           


Q ss_pred             CCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCc
Q 002360          704 SSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD  783 (931)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~  783 (931)
                                                          ...++.|+|++|.++ .+|..+..+++|++|+|++|+--..+|.
T Consensus       845 ------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        845 ------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             ------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc
Confidence                                                112356677777766 5666677777777777776333335666


Q ss_pred             CccCcCCCCEEeccCCc
Q 002360          784 NIGVMRSIESLDFSANQ  800 (931)
Q Consensus       784 ~l~~l~~L~~LdLs~N~  800 (931)
                      .+..+++|+.+++++|.
T Consensus       888 ~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        888 NISKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccccCCCeeecCCCc
Confidence            66677777777777664

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.87  E-value=9.5e-21  Score=236.25  Aligned_cols=316  Identities=21%  Similarity=0.295  Sum_probs=185.3

Q ss_pred             CCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccC
Q 002360          267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE  346 (931)
Q Consensus       267 ~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  346 (931)
                      +|+.|.+.++.+. .+|.. + ...+|++|++.++ .+. .++..+..+++|+.++++++.....+|. +..+     ++
T Consensus       590 ~Lr~L~~~~~~l~-~lP~~-f-~~~~L~~L~L~~s-~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l-----~~  658 (1153)
T PLN03210        590 KLRLLRWDKYPLR-CMPSN-F-RPENLVKLQMQGS-KLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA-----TN  658 (1153)
T ss_pred             ccEEEEecCCCCC-CCCCc-C-CccCCcEEECcCc-ccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccC-----Cc
Confidence            3555555555443 33332 2 3445555555554 332 2344445555566666655543334442 2222     67


Q ss_pred             ccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccC
Q 002360          347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN  426 (931)
Q Consensus       347 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~  426 (931)
                      |++|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|++|++++|...+.+|..    .         
T Consensus       659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~---------  724 (1153)
T PLN03210        659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----S---------  724 (1153)
T ss_pred             ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----c---------
Confidence            7777777777666677777778888888888776555666544 6777888888777644333320    1         


Q ss_pred             CceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccC
Q 002360          427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGG  506 (931)
Q Consensus       427 ~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~  506 (931)
                                     .+|+.|+++++.+. .+|..+ .+++|+.|++.++....                      +.+.
T Consensus       725 ---------------~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~----------------------l~~~  765 (1153)
T PLN03210        725 ---------------TNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEK----------------------LWER  765 (1153)
T ss_pred             ---------------CCcCeeecCCCccc-cccccc-cccccccccccccchhh----------------------cccc
Confidence                           12333333333332 222221 23444444444332110                      0000


Q ss_pred             CCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCC
Q 002360          507 VPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN  586 (931)
Q Consensus       507 ~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n  586 (931)
                      +..                          +.   +    .....+++|+.|++++|...+.+|..+.++++|+.|++++|
T Consensus       766 ~~~--------------------------l~---~----~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C  812 (1153)
T PLN03210        766 VQP--------------------------LT---P----LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENC  812 (1153)
T ss_pred             ccc--------------------------cc---h----hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCC
Confidence            000                          00   0    00011356778888887766667777888888888888887


Q ss_pred             cceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC
Q 002360          587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP  666 (931)
Q Consensus       587 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p  666 (931)
                      ...+.+|..+ .+++|+.|++++|.....+|..   ..+|+.|+|++|.+. .+|.++. .+++|+.|++++|+--..+|
T Consensus       813 ~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~-~l~~L~~L~L~~C~~L~~l~  886 (1153)
T PLN03210        813 INLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE-KFSNLSFLDMNGCNNLQRVS  886 (1153)
T ss_pred             CCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh-cCCCCCEEECCCCCCcCccC
Confidence            6555677665 5788888888887665555543   357888888888887 6887776 68888888888865555677


Q ss_pred             cccCCCCCcCEEEccCCcc
Q 002360          667 IQLCRLASLQILDVAYNSL  685 (931)
Q Consensus       667 ~~l~~l~~L~~L~Ls~N~l  685 (931)
                      ..+..+++|+.+++++|.-
T Consensus       887 ~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        887 LNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cccccccCCCeeecCCCcc
Confidence            7777888888888887753

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=1.7e-24  Score=217.01  Aligned_cols=425  Identities=19%  Similarity=0.198  Sum_probs=266.5

Q ss_pred             CccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCC-cccccccccccCCCCC
Q 002360          292 SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG-CQIFGHLTNQLGQFKR  370 (931)
Q Consensus       292 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~  370 (931)
                      .-.+++|..| .++...+.+|..+++|+.+++++|.|+...|..|..+     .++.+|.+.+ |+|+......|+++..
T Consensus        68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL-----~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGL-----ASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             cceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhh-----HhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            4567788888 7777777788888888888888888877777777666     5555555544 7777766677777777


Q ss_pred             CCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEcc
Q 002360          371 LNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELR  450 (931)
Q Consensus       371 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~  450 (931)
                      |+.|.+.-|++.-.....|..+++|..|.+..|.+. .++...|..+..++.+.+..|.+.....-.|..-         
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~---------  211 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD---------  211 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhh---------
Confidence            777777777777666677777777777777777775 5555567777777777777766544332222110         


Q ss_pred             CCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEE
Q 002360          451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFD  530 (931)
Q Consensus       451 ~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~  530 (931)
                         .....|..+++........+.+.++....+..|.....++..=-.+.+..                           
T Consensus       212 ---~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~---------------------------  261 (498)
T KOG4237|consen  212 ---DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFP---------------------------  261 (498)
T ss_pred             ---HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCc---------------------------
Confidence               00112223333334444444445554444444433211111100111111                           


Q ss_pred             cccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCC
Q 002360          531 LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN  610 (931)
Q Consensus       531 ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n  610 (931)
                            .+.-|..   .+..+++|++|+|++|+++++-+.+|..+..+++|.|..|++...-...|.++..|+.|+|.+|
T Consensus       262 ------d~~cP~~---cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N  332 (498)
T KOG4237|consen  262 ------DSICPAK---CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN  332 (498)
T ss_pred             ------CCcChHH---HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC
Confidence                  1111111   1345789999999999999999999999999999999999998777778999999999999999


Q ss_pred             cCccccchhhccCCCCcEEecCCCcccccC-chhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc-
Q 002360          611 RLSGVIPTSFKNFSILEALDVGENELVGSI-PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT-  688 (931)
Q Consensus       611 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-  688 (931)
                      +|+...|..|..+.+|.+|.+-.|++...- -.|+++-        +..+.-.|..|-  +.-..++.++++++.+... 
T Consensus       333 ~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W--------lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~  402 (498)
T KOG4237|consen  333 QITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW--------LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFR  402 (498)
T ss_pred             eeEEEecccccccceeeeeehccCcccCccchHHHHHH--------HhhCCCCCCCCC--CCCchhccccchhccccccc
Confidence            999999999999999999999998875321 1233221        112222222221  1223455556665554321 


Q ss_pred             --cCccccccccccccCCCCCCccccccccCCCccccc-eeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCC
Q 002360          689 --IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVED-TSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ  765 (931)
Q Consensus       689 --~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~  765 (931)
                        .|+..+-..      ...++...        ...+. .....++...-..++......+++.+|.++ .+|.+  .+.
T Consensus       403 c~~~ee~~~~~------s~~cP~~c--------~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~  465 (498)
T KOG4237|consen  403 CGGPEELGCLT------SSPCPPPC--------TCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLR  465 (498)
T ss_pred             cCCccccCCCC------CCCCCCCc--------chhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHh
Confidence              222111100      00000000        00000 000111111111122334477999999998 78877  678


Q ss_pred             CCCEEEccCCcCcccCCcCccCcCCCCEEeccCC
Q 002360          766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN  799 (931)
Q Consensus       766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N  799 (931)
                      +| .+|+|+|+++..-...|.++++|.+|-+|+|
T Consensus       466 ~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  466 SL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            88 9999999999888889999999999999987

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.9e-21  Score=220.18  Aligned_cols=202  Identities=28%  Similarity=0.313  Sum_probs=132.6

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|+.|++++|.++. +|..   .++|+.|++++|+++ .+|..   +++|+.|++++|++++. |..   ..+|+.|++
T Consensus       262 ~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~L  329 (788)
T PRK15387        262 PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASL-PAL---PSELCKLWA  329 (788)
T ss_pred             cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCccccC-CCC---ccccccccc
Confidence            456677777776664 3322   245667777777776 34432   35677777777777643 322   234667777


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|+++ .+|..    ..+|+.|+|++|++++ +|..   .++|+.|++++|++++ +|...                  
T Consensus       330 s~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l~------------------  381 (788)
T PRK15387        330 YNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPALP------------------  381 (788)
T ss_pred             ccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Ccccc------------------
Confidence            777776 46631    3467777777777774 4432   3466777777777763 44321                  


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                   ..|+.|++++|+|++ +|..   .++|+.|++++|+++ .+|..   ..+|
T Consensus       382 -----------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L  424 (788)
T PRK15387        382 -----------------------------SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGL  424 (788)
T ss_pred             -----------------------------cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence                                         124678888888873 5543   356888888888887 46753   3467


Q ss_pred             CEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       792 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +.|++++|+++ .+|..+.++++|+.|+|++|+|+|.+|.
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            77888888887 6788888888888888888888887664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=1.3e-20  Score=216.69  Aligned_cols=186  Identities=28%  Similarity=0.390  Sum_probs=119.6

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      +|+.|++++|+++. +|.   ..++|+.|++++|++++ +|..   ..+|+.|++++|.+++ +|..   ..+|+.|+|+
T Consensus       283 ~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS  350 (788)
T PRK15387        283 GLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVS  350 (788)
T ss_pred             hcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecC
Confidence            45556666666554 232   12456666666666663 3332   2346666666776663 3321   2457777777


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      +|+++ .+|..    .++|+.|++++|+++. +|..   .++|+.|++++|++++ +|...                   
T Consensus       351 ~N~Ls-~LP~l----p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l~-------------------  401 (788)
T PRK15387        351 DNQLA-SLPTL----PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVLP-------------------  401 (788)
T ss_pred             CCccC-CCCCC----Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCcc-------------------
Confidence            77776 45542    3567777777777773 4533   2467788888888773 44321                   


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                  +.|+.|++++|++++ +|..   ...|+.|++++|+|+ .+|..+.++++|+
T Consensus       402 ----------------------------s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~  448 (788)
T PRK15387        402 ----------------------------SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSET  448 (788)
T ss_pred             ----------------------------cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCC
Confidence                                        123678888888874 6653   346778888888888 7888888888888


Q ss_pred             EEeccCCcCcccCcccccCC
Q 002360          793 SLDFSANQLSGQIPQSMSNL  812 (931)
Q Consensus       793 ~LdLs~N~l~~~~p~~l~~l  812 (931)
                      .|+|++|++++.+|..+..+
T Consensus       449 ~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        449 TVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             eEECCCCCCCchHHHHHHHH
Confidence            99999998888888776443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=9.5e-19  Score=203.15  Aligned_cols=205  Identities=24%  Similarity=0.428  Sum_probs=122.3

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|+.|++++|+++. +|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|+++. +|..+.  ++|+.|++
T Consensus       220 ~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEEC
Confidence            356666666666664 343332  35666677766666 4555443  456677777666663 444432  46677777


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|+++ .+|..+.   ++|+.|++++|.++. +|..+  .++|+.|++++|.+++ +|..+                  
T Consensus       291 s~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l------------------  344 (754)
T PRK15370        291 YDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL------------------  344 (754)
T ss_pred             CCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh------------------
Confidence            777666 4554432   356667777777663 44333  2566777777776663 44322                  


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                  .+.|+.|++++|+++ .+|..+.  +.|++|+|++|+++ .+|..+.  .+|
T Consensus       345 ----------------------------~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL  390 (754)
T PRK15370        345 ----------------------------PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AAL  390 (754)
T ss_pred             ----------------------------cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHH
Confidence                                        123467777777776 4555443  56777777777777 5565543  357


Q ss_pred             CEEeccCCcCcccCcccc----cCCCCCCeeeCCCcccc
Q 002360          792 ESLDFSANQLSGQIPQSM----SNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       792 ~~LdLs~N~l~~~~p~~l----~~l~~L~~L~ls~N~l~  826 (931)
                      +.||+++|+++ .+|..+    ..++.+..+++.+|+++
T Consensus       391 ~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77777777776 444433    33466777777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.5e-19  Score=203.56  Aligned_cols=245  Identities=24%  Similarity=0.393  Sum_probs=146.9

Q ss_pred             ccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCC
Q 002360          444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSL  523 (931)
Q Consensus       444 L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~  523 (931)
                      ...|+++++.++ .+|..+  .+.|+.|++++|+++. +|..+.   .+|+.|++++|.++. +|               
T Consensus       180 ~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~---~nL~~L~Ls~N~Lts-LP---------------  236 (754)
T PRK15370        180 KTELRLKILGLT-TIPACI--PEQITTLILDNNELKS-LPENLQ---GNIKTLYANSNQLTS-IP---------------  236 (754)
T ss_pred             ceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc-CChhhc---cCCCEEECCCCcccc-CC---------------
Confidence            455666666655 334333  2467777777777763 344332   356666666666542 22               


Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCC
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR  603 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  603 (931)
                                        ..+      ..+|+.|++++|++.. +|..+.  ++|+.|++++|+++ .+|..+.  ++|+
T Consensus       237 ------------------~~l------~~~L~~L~Ls~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~  286 (754)
T PRK15370        237 ------------------ATL------PDTIQEMELSINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELR  286 (754)
T ss_pred             ------------------hhh------hccccEEECcCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCc
Confidence                              111      1356666777766664 444433  35777777777766 4555443  4677


Q ss_pred             EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360          604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN  683 (931)
Q Consensus       604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  683 (931)
                      .|++++|++++ +|..+.  ++|+.|++++|+++ .+|..+   .++|+.|++++|.+++ +|..+.  ++|+.|++++|
T Consensus       287 ~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N  356 (754)
T PRK15370        287 YLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKN  356 (754)
T ss_pred             EEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCC
Confidence            77777777764 343322  35777777777776 466543   3567777777777764 555443  57777777777


Q ss_pred             ccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC
Q 002360          684 SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN  763 (931)
Q Consensus       684 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~  763 (931)
                      +++ .+|..+                                              .+.|+.|+|++|+++ .+|..+. 
T Consensus       357 ~L~-~LP~~l----------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~-  387 (754)
T PRK15370        357 QIT-VLPETL----------------------------------------------PPTITTLDVSRNALT-NLPENLP-  387 (754)
T ss_pred             CCC-cCChhh----------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence            776 344322                                              112467777777777 4555543 


Q ss_pred             CCCCCEEEccCCcCcccCCcCcc----CcCCCCEEeccCCcCc
Q 002360          764 LQGLQSLNLSHNLFTGRIPDNIG----VMRSIESLDFSANQLS  802 (931)
Q Consensus       764 l~~L~~L~Ls~N~l~~~ip~~l~----~l~~L~~LdLs~N~l~  802 (931)
                       ..|+.|++++|+++ .+|..+.    .++.+..|++.+|+++
T Consensus       388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence             35777788888877 5555443    3467778888888876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=8e-19  Score=190.82  Aligned_cols=283  Identities=19%  Similarity=0.225  Sum_probs=148.4

Q ss_pred             EEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCC
Q 002360          470 DLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGEN  549 (931)
Q Consensus       470 ~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~  549 (931)
                      .|+|..+.+++..-..++..+..++.|+++++.++.                                 .....++..+.
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~---------------------------------~~~~~i~~~l~   48 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGE---------------------------------EAAKALASALR   48 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcH---------------------------------HHHHHHHHHHh
Confidence            456666666644444455555566666666665532                                 11112222223


Q ss_pred             CCCCccEEECcCCcccc------ccCCcccCCCCCCEEecCCCcceecCCCcccCCCC---CCEEEccCCcCcc----cc
Q 002360          550 FSKNIEFLKLSTNHFSE------GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS---LRSLNLRNNRLSG----VI  616 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~---L~~L~L~~n~l~~----~~  616 (931)
                      ..+.++.++++++.+.+      .++..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++.+    .+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            34556666666665542      22334555666777777776665444444433333   7777777776652    22


Q ss_pred             chhhccC-CCCcEEecCCCcccccCchhHH---hhcCcCcEEEccCcccccc----CCcccCCCCCcCEEEccCCccccc
Q 002360          617 PTSFKNF-SILEALDVGENELVGSIPTWIG---ERFSRLMILILRSNKFHGD----FPIQLCRLASLQILDVAYNSLLGT  688 (931)
Q Consensus       617 p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~Ls~N~l~~~  688 (931)
                      ...+..+ ++|+.|++++|.+++..+..+.   ..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+.+.
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            2334445 6677777777766632222111   1345677777777666632    223344456677777777766532


Q ss_pred             cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc-----C
Q 002360          689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT-----N  763 (931)
Q Consensus       689 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~-----~  763 (931)
                      ....+..                                        ....++.|+.|++++|.+++.....+.     .
T Consensus       209 ~~~~l~~----------------------------------------~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~  248 (319)
T cd00116         209 GASALAE----------------------------------------TLASLKSLEVLNLGDNNLTDAGAAALASALLSP  248 (319)
T ss_pred             HHHHHHH----------------------------------------HhcccCCCCEEecCCCcCchHHHHHHHHHHhcc
Confidence            2211110                                        001123346666766666642222221     1


Q ss_pred             CCCCCEEEccCCcCc----ccCCcCccCcCCCCEEeccCCcCccc----CcccccCC-CCCCeeeCCCccc
Q 002360          764 LQGLQSLNLSHNLFT----GRIPDNIGVMRSIESLDFSANQLSGQ----IPQSMSNL-SFLNYLNLSNNNL  825 (931)
Q Consensus       764 l~~L~~L~Ls~N~l~----~~ip~~l~~l~~L~~LdLs~N~l~~~----~p~~l~~l-~~L~~L~ls~N~l  825 (931)
                      .+.|++|++++|.++    ..+...+..+++|+.+|+++|.++..    ....+... +.|+++++.+|++
T Consensus       249 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         249 NISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             CCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            356777777777765    12333444556777777777777644    33334444 5667777766653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=2.8e-18  Score=186.58  Aligned_cols=285  Identities=21%  Similarity=0.236  Sum_probs=183.8

Q ss_pred             EEccCCCCC-CCcChhhhccCCCcEEeCCCCCCCCCcchhH---HhccccceEEeccCcccccCCCCCCCCCCCcccCCC
Q 002360          447 LELRSCHLG-PRFPLWLQLQKKLNDLDISSTRISDKIPRAF---WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPS  522 (931)
Q Consensus       447 L~L~~~~l~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~---~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~  522 (931)
                      |+|..+.++ ......+..+..|+.|+++++.+++.....+   ....+.+++++++++.+.+ .+              
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~--------------   67 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IP--------------   67 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cc--------------
Confidence            455555554 3445566677778888888888865322222   2234456667666665532 00              


Q ss_pred             CccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCC---CCEEecCCCccee----cCCCc
Q 002360          523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPR---LRTLNLGNNNFTG----SLPMS  595 (931)
Q Consensus       523 ~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~---L~~L~Ls~n~l~~----~~p~~  595 (931)
                                      .....++..+..+++|+.|++++|.+.+..+..+..+..   |++|++++|++++    .+...
T Consensus        68 ----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~  131 (319)
T cd00116          68 ----------------RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG  131 (319)
T ss_pred             ----------------hHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH
Confidence                            001111222333567888888888877544444444444   8888888888763    22334


Q ss_pred             ccCC-CCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCchhHHh---hcCcCcEEEccCcccccc---
Q 002360          596 IGTL-TSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGE---RFSRLMILILRSNKFHGD---  664 (931)
Q Consensus       596 ~~~l-~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l~~L~~L~L~~n~l~~~---  664 (931)
                      +..+ ++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+..   ..++|+.|++++|.+++.   
T Consensus       132 l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         132 LKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            5556 7889999999988843    3445667788999999999887532222222   346899999999988643   


Q ss_pred             -CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccce
Q 002360          665 -FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV  743 (931)
Q Consensus       665 -~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  743 (931)
                       ++..+..+++|+.|++++|++++.....+...  +                                     ....+.|
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~--~-------------------------------------~~~~~~L  252 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLTDAGAAALASA--L-------------------------------------LSPNISL  252 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--H-------------------------------------hccCCCc
Confidence             34456778999999999999875322222110  0                                     0012456


Q ss_pred             eEEEcccCccc----ccCCccccCCCCCCEEEccCCcCccc----CCcCccCc-CCCCEEeccCCcC
Q 002360          744 RSIDISMNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVM-RSIESLDFSANQL  801 (931)
Q Consensus       744 ~~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~LdLs~N~l  801 (931)
                      +.|++++|.++    ..+...+..+++|+.+++++|.++..    +...+... +.|++||+.+|++
T Consensus       253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            89999999997    23455667778999999999999854    34444444 7899999999864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.68  E-value=7.8e-19  Score=156.04  Aligned_cols=181  Identities=26%  Similarity=0.503  Sum_probs=134.6

Q ss_pred             CCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEE
Q 002360          599 LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL  678 (931)
Q Consensus       599 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (931)
                      +...+.|.+++|+++ .+|..++.+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.+|.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            445556666666666 44455666777777777777776 6777775 6777778887777776 678888888888888


Q ss_pred             EccCCcccc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360          679 DVAYNSLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI  757 (931)
Q Consensus       679 ~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i  757 (931)
                      ||++|++.. .+|..|..++.|                                            +.|+|++|.|. .+
T Consensus       108 dltynnl~e~~lpgnff~m~tl--------------------------------------------ralyl~dndfe-~l  142 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTL--------------------------------------------RALYLGDNDFE-IL  142 (264)
T ss_pred             hccccccccccCCcchhHHHHH--------------------------------------------HHHHhcCCCcc-cC
Confidence            888888763 455555444443                                            66788888887 78


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCC---CCCeeeCCCccccccCC
Q 002360          758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS---FLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~---~L~~L~ls~N~l~g~ip  830 (931)
                      |..++++++|+.|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++.+.   +=+.+.+.+|+...+|-
T Consensus       143 p~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  143 PPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNPIA  216 (264)
T ss_pred             ChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCChHH
Confidence            888999999999999999988 88999999999999999999998 6777777654   23456677888765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.65  E-value=1.8e-18  Score=153.82  Aligned_cols=185  Identities=27%  Similarity=0.464  Sum_probs=104.8

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +..++.|.+++|+++. +|..+..+.+|+.|++++|++. .+|.+++.++.|+.|++.-|++. ..|..|+.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            3445555555555554 3334455555555555555555 44555555555555555555554 4455555555555555


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +.+|++...                        .+|..|..++.|+.|+|++|.+. .+|+.++++++|           
T Consensus       109 ltynnl~e~------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l-----------  152 (264)
T KOG0617|consen  109 LTYNNLNEN------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL-----------  152 (264)
T ss_pred             ccccccccc------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce-----------
Confidence            555544321                        24455555555555555555554 445555554444           


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC-
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR-  789 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-  789 (931)
                                                       +.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|..++++. 
T Consensus       153 ---------------------------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l  197 (264)
T KOG0617|consen  153 ---------------------------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDL  197 (264)
T ss_pred             ---------------------------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhh
Confidence                                             45555555555 67788888888888888888888 6776676653 


Q ss_pred             --CCCEEeccCCcCcccCcccc
Q 002360          790 --SIESLDFSANQLSGQIPQSM  809 (931)
Q Consensus       790 --~L~~LdLs~N~l~~~~p~~l  809 (931)
                        +=+.+.+.+|.....|.+.|
T Consensus       198 ~~~k~v~r~E~NPwv~pIaeQf  219 (264)
T KOG0617|consen  198 VGNKQVMRMEENPWVNPIAEQF  219 (264)
T ss_pred             hhhHHHHhhhhCCCCChHHHHH
Confidence              22445566777665555443

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1.1e-14  Score=169.52  Aligned_cols=115  Identities=37%  Similarity=0.674  Sum_probs=102.9

Q ss_pred             eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      ++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCC--ccCcccccccCCC-CCCCCCC-CCCC
Q 002360          823 NNLNGEIPSST--QLQSFDASSFAGN-DLCGAPL-SSCT  857 (931)
Q Consensus       823 N~l~g~ip~~~--~~~~~~~~~~~~n-~l~~~~~-~~c~  857 (931)
                      |+++|.+|...  .+......++.+| .+||.|. ..|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            99999999752  1233445678999 8998753 3564

>PLN03150 hypothetical protein; Provisional

Probab=99.36  E-value=2.9e-12  Score=149.27  Aligned_cols=134  Identities=34%  Similarity=0.531  Sum_probs=113.6

Q ss_pred             CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCc----CccceEecC--CC--CcEEEEEcCCCCCCCchhhhccccc
Q 002360           10 TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCC----KWGGVLCGN--FT--GHVLELNLQNPFSPDDNEAYQRSML   81 (931)
Q Consensus        10 ~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c----~w~g~~c~~--~~--~~v~~L~l~~~~~~~~~~~~~~~~~   81 (931)
                      ..+.++|.+||+++|.++.++..  .+|.  +..||    .|.|+.|..  ..  .+|+.|+|+++            .+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n------------~L  430 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQ------------GL  430 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCC------------Cc
Confidence            35677899999999999876532  4896  34453    799999952  22  36999999996            78


Q ss_pred             ceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCccc-ccccC
Q 002360           82 VGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAET  160 (931)
Q Consensus        82 ~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~-~~~~~  160 (931)
                      .|.+|..+.++++|+.|+|++|.+.+. +|..++.+++|++|+|++|.+++.+|..++++++|++|+|++|.+. .+|..
T Consensus       431 ~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        431 RGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA  509 (623)
T ss_pred             cccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence            899999999999999999999999986 8999999999999999999999999999999999999999998865 34443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.30  E-value=1.1e-13  Score=146.43  Aligned_cols=113  Identities=29%  Similarity=0.468  Sum_probs=56.8

Q ss_pred             CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360          579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS  658 (931)
Q Consensus       579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  658 (931)
                      ...|++.|++. ++|..+..+..|+.+.+..|.+. .+|..+.++..|.+|||+.|+++ .+|..++ .+ -|+.|-+++
T Consensus        78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvli~sN  152 (722)
T KOG0532|consen   78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVLIVSN  152 (722)
T ss_pred             hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeEEEec
Confidence            34555555555 44554444455555555555554 44455555555555555555555 4555443 22 255555555


Q ss_pred             ccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360          659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA  698 (931)
Q Consensus       659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  698 (931)
                      |+++ .+|..++.++.|..||.+.|.+. .+|..++.+.+
T Consensus       153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~s  190 (722)
T KOG0532|consen  153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTS  190 (722)
T ss_pred             Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHH
Confidence            5554 44444555555555555555554 34444444333

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.2e-13  Score=146.07  Aligned_cols=176  Identities=31%  Similarity=0.490  Sum_probs=151.9

Q ss_pred             CCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEE
Q 002360          599 LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL  678 (931)
Q Consensus       599 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  678 (931)
                      ++--...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+. ++..|++|+|+.|+++ ..|..++.|+ |+.|
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL  148 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence            445567899999998 78888899999999999999998 8999998 7999999999999999 7888888876 8999


Q ss_pred             EccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC
Q 002360          679 DVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP  758 (931)
Q Consensus       679 ~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip  758 (931)
                      -+++|+++ .+|+.++.+..|                                            ..||.|.|++. .+|
T Consensus       149 i~sNNkl~-~lp~~ig~~~tl--------------------------------------------~~ld~s~nei~-slp  182 (722)
T KOG0532|consen  149 IVSNNKLT-SLPEEIGLLPTL--------------------------------------------AHLDVSKNEIQ-SLP  182 (722)
T ss_pred             EEecCccc-cCCcccccchhH--------------------------------------------HHhhhhhhhhh-hch
Confidence            99999997 778777644443                                            67888999987 788


Q ss_pred             ccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360          759 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       759 ~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      ..++++.+|+.|++..|++. ..|+.+..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|+|+.+
T Consensus       183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            88999999999999999998 677777755 4889999999998 8899999999999999999999854

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.23  E-value=9.4e-12  Score=139.13  Aligned_cols=199  Identities=31%  Similarity=0.560  Sum_probs=113.0

Q ss_pred             EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCC-CCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360          556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT-SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN  634 (931)
Q Consensus       556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  634 (931)
                      .+++..|.+...+. .+..++.++.|++.+|.++ .+|......+ +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            56666666633222 2334466777777777777 4455555553 7777777777776 34455667777777777777


Q ss_pred             cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccc
Q 002360          635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYA  714 (931)
Q Consensus       635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  714 (931)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+.+++++|++. ..+..+.++..+               
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l---------------  234 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNL---------------  234 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccc---------------
Confidence            776 5665543 4666777777777766 44444444445666666666432 222223332222               


Q ss_pred             ccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEE
Q 002360          715 FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL  794 (931)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  794 (931)
                                                   ..+.+++|++. .++..++.++.+++|++++|.++ .++. ++.+.+++.|
T Consensus       235 -----------------------------~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L  282 (394)
T COG4886         235 -----------------------------SGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLREL  282 (394)
T ss_pred             -----------------------------cccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEE
Confidence                                         34445555554 22445555555666666666665 3333 5555666666


Q ss_pred             eccCCcCcccCccc
Q 002360          795 DFSANQLSGQIPQS  808 (931)
Q Consensus       795 dLs~N~l~~~~p~~  808 (931)
                      |+++|.++...|..
T Consensus       283 ~~s~n~~~~~~~~~  296 (394)
T COG4886         283 DLSGNSLSNALPLI  296 (394)
T ss_pred             eccCccccccchhh
Confidence            66666665444433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.21  E-value=1.6e-11  Score=137.35  Aligned_cols=200  Identities=32%  Similarity=0.496  Sum_probs=141.1

Q ss_pred             CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCC-CCcEEecCCCcccccCchhHHhhcCcCcEEEcc
Q 002360          579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFS-ILEALDVGENELVGSIPTWIGERFSRLMILILR  657 (931)
Q Consensus       579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  657 (931)
                      ..++++.|.+... ...+..++.++.|++.+|.++. ++....... +|+.|++++|++. .+|..+. .+++|+.|+++
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~  171 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLS  171 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhh-ccccccccccC
Confidence            3577777776422 2334455778888888888874 444445553 7888888888887 6765555 68888888888


Q ss_pred             CccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhh
Q 002360          658 SNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYN  737 (931)
Q Consensus       658 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (931)
                      +|++. .+|...+.++.|+.|++++|++. .+|.......                                        
T Consensus       172 ~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~----------------------------------------  209 (394)
T COG4886         172 FNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS----------------------------------------  209 (394)
T ss_pred             Cchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh----------------------------------------
Confidence            88887 45554446788888888888887 4454332222                                        


Q ss_pred             hhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCe
Q 002360          738 SILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY  817 (931)
Q Consensus       738 ~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~  817 (931)
                          .|+.+++++|... .++..+..+..+..|.+++|++. .++..++.+++++.|++++|+++. ++. +..+..|+.
T Consensus       210 ----~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~  281 (394)
T COG4886         210 ----ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRE  281 (394)
T ss_pred             ----hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCE
Confidence                2467778888544 56667778888888888888887 557777888888888888888874 443 778888888


Q ss_pred             eeCCCccccccCCCC
Q 002360          818 LNLSNNNLNGEIPSS  832 (931)
Q Consensus       818 L~ls~N~l~g~ip~~  832 (931)
                      |++++|.++...|..
T Consensus       282 L~~s~n~~~~~~~~~  296 (394)
T COG4886         282 LDLSGNSLSNALPLI  296 (394)
T ss_pred             EeccCccccccchhh
Confidence            888888887776643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=1e-11  Score=147.25  Aligned_cols=160  Identities=26%  Similarity=0.286  Sum_probs=101.9

Q ss_pred             hcCCCCCCCCCCCCCC-----CCCCcCccceEec-----CCCCcEEEEEcCCCCCCCchhhhcccccceeecccccCccC
Q 002360           25 HDLRDPSHRLASWIGD-----NGDCCKWGGVLCG-----NFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKH   94 (931)
Q Consensus        25 ~~~~d~~~~l~~w~~~-----~~~~c~w~g~~c~-----~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~   94 (931)
                      -.|||.+.++|-|+++     ..++|.-.++.-.     .....||++++.++             ....++.+. ..+.
T Consensus       481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~-------------~~~~~~~~~-~~~~  546 (889)
T KOG4658|consen  481 VKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNN-------------KIEHIAGSS-ENPK  546 (889)
T ss_pred             EEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEecc-------------chhhccCCC-CCCc
Confidence            4689999999999943     2444443331111     11246677776653             122222222 2336


Q ss_pred             CcEeeCCCCC--CCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360           95 LVHLDLSGND--FQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH  172 (931)
Q Consensus        95 L~~L~Ls~n~--~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~  172 (931)
                      |++|-+.+|.  +... .+++|..++.|++|||++|.--+.+|..|+.|.+||+|+++++.++.+|..+   ++++.|.+
T Consensus       547 L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l---~~Lk~L~~  622 (889)
T KOG4658|consen  547 LRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL---GNLKKLIY  622 (889)
T ss_pred             cceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH---HHHHhhhe
Confidence            8888888875  4433 3566888999999999988766689999999999999999999888877764   56666677


Q ss_pred             EEccCcccCCCCchHHHhccCCCCCEEEcCCC
Q 002360          173 LYISFVNLSKASDSLLVINSLHSLKELKLSFC  204 (931)
Q Consensus       173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n  204 (931)
                      |++..+......  +.....+++|++|.+...
T Consensus       623 Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  623 LNLEVTGRLESI--PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eccccccccccc--cchhhhcccccEEEeecc
Confidence            776655433222  112334556666555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.10  E-value=1e-11  Score=124.58  Aligned_cols=142  Identities=23%  Similarity=0.271  Sum_probs=69.0

Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccc----ccCCcccCCCCCCEEecCCCcceec----CCCc
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE----GIPDCWMNWPRLRTLNLGNNNFTGS----LPMS  595 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~  595 (931)
                      +.|+++.+.+|++....-..+...+...+.|+.+.++.|.|..    .+...|..+++|+.|||.+|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            4566666666666554444444444445556666666665532    1223344555555555555555421    1222


Q ss_pred             ccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc----CCcccCC
Q 002360          596 IGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD----FPIQLCR  671 (931)
Q Consensus       596 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~  671 (931)
                      +..+++|++|++++|.+...-...|                    -..+-...++|++|.+.+|.++..    +...+..
T Consensus       237 L~s~~~L~El~l~dcll~~~Ga~a~--------------------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e  296 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLENEGAIAF--------------------VDALKESAPSLEVLELAGNEITRDAALALAACMAE  296 (382)
T ss_pred             hcccchheeecccccccccccHHHH--------------------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc
Confidence            3334444555555544443222111                    111112344555555555555422    2223344


Q ss_pred             CCCcCEEEccCCcc
Q 002360          672 LASLQILDVAYNSL  685 (931)
Q Consensus       672 l~~L~~L~Ls~N~l  685 (931)
                      .+.|..|+|++|++
T Consensus       297 k~dL~kLnLngN~l  310 (382)
T KOG1909|consen  297 KPDLEKLNLNGNRL  310 (382)
T ss_pred             chhhHHhcCCcccc
Confidence            67777777777777

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=4.7e-11  Score=123.04  Aligned_cols=212  Identities=22%  Similarity=0.226  Sum_probs=90.5

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeeccccccccc--CCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGM--IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS  168 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~  168 (931)
                      +++.|+...|.++.+...........|++++.|||+.|-+...  +-.....|++|+.|+|+.|.+........ -..++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLLS  197 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhhh
Confidence            4555555555555544221112445555555555555544422  11233455555555555555433222111 01334


Q ss_pred             CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360          169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD  248 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  248 (931)
                      +|+.|.++.|.++ ..+....+..                        +|+|+.|++.+|...........-+..|++|+
T Consensus       198 ~lK~L~l~~CGls-~k~V~~~~~~------------------------fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld  252 (505)
T KOG3207|consen  198 HLKQLVLNSCGLS-WKDVQWILLT------------------------FPSLEVLYLEANEIILIKATSTKILQTLQELD  252 (505)
T ss_pred             hhheEEeccCCCC-HHHHHHHHHh------------------------CCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence            4444444444444 2222223334                        45555555555532212222223344455555


Q ss_pred             cCCCcccccc-cccccCCCCCCEEeccCCccccccCcc-----ccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEE
Q 002360          249 LYSNQFNSAV-LGWLSKLNDLEVLSLEDNRLQGDISSL-----GLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSF  321 (931)
Q Consensus       249 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~-----~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L  321 (931)
                      |++|++-... -...+.++.|+.|+++.+.+..-.-..     ....+++|++|++..| .+.. .....+..+++|+.+
T Consensus       253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhh
Confidence            5555443221 122344455555555555443211000     0234455555555555 3211 111223344555666


Q ss_pred             EcCCCcCC
Q 002360          322 SMASTKLS  329 (931)
Q Consensus       322 ~l~~~~l~  329 (931)
                      .+..+.+.
T Consensus       332 ~~~~n~ln  339 (505)
T KOG3207|consen  332 RITLNYLN  339 (505)
T ss_pred             hccccccc
Confidence            65555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=7.2e-11  Score=115.30  Aligned_cols=130  Identities=24%  Similarity=0.282  Sum_probs=88.3

Q ss_pred             cCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEe
Q 002360          650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVM  729 (931)
Q Consensus       650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  729 (931)
                      .|+++||++|.++ .+.++..-+|.++.|++|+|.+..     ++++..                               
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nLa~-------------------------------  327 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNLAE-------------------------------  327 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhhhh-------------------------------
Confidence            4677777777776 455555666777777777777752     111111                               


Q ss_pred             ecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-ccc
Q 002360          730 KGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQS  808 (931)
Q Consensus       730 ~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~  808 (931)
                                +++|+.||||+|.++ .+...-..+-+.++|+|+.|.+. . -..++.+-+|+.||+++|+|.... -..
T Consensus       328 ----------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~  394 (490)
T KOG1259|consen  328 ----------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNH  394 (490)
T ss_pred             ----------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcc
Confidence                      333477777777776 33333345667788888888875 2 234777888899999999887432 346


Q ss_pred             ccCCCCCCeeeCCCccccccC
Q 002360          809 MSNLSFLNYLNLSNNNLNGEI  829 (931)
Q Consensus       809 l~~l~~L~~L~ls~N~l~g~i  829 (931)
                      +++|+.|+.+-|.+|++.+.+
T Consensus       395 IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  395 IGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cccccHHHHHhhcCCCccccc
Confidence            788899999999999998754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.1e-11  Score=122.84  Aligned_cols=138  Identities=28%  Similarity=0.289  Sum_probs=67.5

Q ss_pred             CCCCCCccEEECcCCccccccC-CcccCCCCCCEEecCCCcceecCC--CcccCCCCCCEEEccCCcCccccchh-hccC
Q 002360          548 ENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSLP--MSIGTLTSLRSLNLRNNRLSGVIPTS-FKNF  623 (931)
Q Consensus       548 ~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l  623 (931)
                      -.+..+|+.+.|.++.+..... .....|++++.|||++|-+..-.|  .-...+++|+.|+++.|++....... -..+
T Consensus       117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            3445667777777766653221 244556677777777776552211  22345666666666666665322111 1134


Q ss_pred             CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360          624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL  685 (931)
Q Consensus       624 ~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  685 (931)
                      ++|+.|.|+.|.++..--.++...+|+|+.|+|..|...+.-.....-+..|+.|||++|++
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            55555666666554222223333455555555555532212111222344444555555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=9.8e-11  Score=114.37  Aligned_cols=201  Identities=23%  Similarity=0.282  Sum_probs=131.1

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccC-CcCccccchhhccCCCCcEE
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRN-NRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .++|..+.++.+.-..+..-. ..-|.|+++.+.+..+. ..| .+-..+.+....-.. .-.+|.....+...+.|+++
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~-~~kptl~t~~v~~s~~~-~~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel  289 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIE-LLKPTLQTICVHNTTIQ-DVP-SLLPETILADPSGSEPSTSNGSALVSADTWQELTEL  289 (490)
T ss_pred             hhhhheeeeeccchhheecee-ecCchhheeeeeccccc-ccc-cccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence            456777777666433221111 12256777776655444 111 121122222222211 11233333344455779999


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      ||++|.++ .+.+++- -.|.++.|++++|.+...  ..+..+++|+.||||+|.++.. ...                 
T Consensus       290 DLS~N~I~-~iDESvK-L~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gw-----------------  347 (490)
T KOG1259|consen  290 DLSGNLIT-QIDESVK-LAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGW-----------------  347 (490)
T ss_pred             cccccchh-hhhhhhh-hccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhh-----------------
Confidence            99999998 6777764 689999999999999843  2377899999999999998721 111                 


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC-CcCccCc
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVM  788 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l  788 (931)
                                                 ...+.+.++|.|+.|.+..  -..++.+-+|..||+++|+|.... -..+|++
T Consensus       348 ---------------------------h~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L  398 (490)
T KOG1259|consen  348 ---------------------------HLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNL  398 (490)
T ss_pred             ---------------------------HhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccc
Confidence                                       1123445899999998852  245778889999999999997422 3568999


Q ss_pred             CCCCEEeccCCcCcccC
Q 002360          789 RSIESLDFSANQLSGQI  805 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~~~  805 (931)
                      +.|+.+.|-+|++.+..
T Consensus       399 PCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  399 PCLETLRLTGNPLAGSV  415 (490)
T ss_pred             cHHHHHhhcCCCccccc
Confidence            99999999999998553

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.98  E-value=6.7e-11  Score=118.73  Aligned_cols=184  Identities=29%  Similarity=0.323  Sum_probs=100.3

Q ss_pred             eeecccccCccCCcEeeCCCCCCCCC---CchhhhhcCCCCceeeccccc---ccccCCcc-------cCCCCCCCEEEc
Q 002360           83 GKINPSLLELKHLVHLDLSGNDFQGI---QIPKYLASLVNLRYLNLSQAR---FTGMIPHQ-------LGNLSNLQYLDL  149 (931)
Q Consensus        83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~---~l~~~l~~l~~L~~L~Ls~n~---~~~~~p~~-------~~~L~~L~~L~L  149 (931)
                      +.+-+.+.....++.++||+|.+...   .+...+.+-+.|+..++++--   ....+|++       +.++++|++|||
T Consensus        20 ~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldL   99 (382)
T KOG1909|consen   20 KDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDL   99 (382)
T ss_pred             hhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeec
Confidence            33445566788999999999988643   134567777888888888642   12234443       345667888888


Q ss_pred             cCCcccc--cccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccC
Q 002360          150 SGVYFEL--HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSG  227 (931)
Q Consensus       150 s~n~~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  227 (931)
                      |.|-+..  ++.....+..+..|++|.|.+|.+.........    ..|..|.  .       ......-+.|+++....
T Consensus       100 SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~----~al~~l~--~-------~kk~~~~~~Lrv~i~~r  166 (382)
T KOG1909|consen  100 SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG----RALFELA--V-------NKKAASKPKLRVFICGR  166 (382)
T ss_pred             cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH----HHHHHHH--H-------HhccCCCcceEEEEeec
Confidence            8776531  111112244556666666666655543221100    0000000  0       01122335666666666


Q ss_pred             CcCCCC----CcccccCCCCCCEEEcCCCccccc----ccccccCCCCCCEEeccCCccc
Q 002360          228 NQFQGQ----IPSRLGNLTSLKHLDLYSNQFNSA----VLGWLSKLNDLEVLSLEDNRLQ  279 (931)
Q Consensus       228 n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  279 (931)
                      |++...    +...|...+.|+.+.+..|.+...    ....+..+++|++|||.+|.++
T Consensus       167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            665432    223355556677777776665322    2234556677777777777655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=3.7e-10  Score=107.01  Aligned_cols=87  Identities=34%  Similarity=0.409  Sum_probs=17.9

Q ss_pred             hhcCCCCceeecccccccccCCcccC-CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhcc
Q 002360          114 LASLVNLRYLNLSQARFTGMIPHQLG-NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS  192 (931)
Q Consensus       114 l~~l~~L~~L~Ls~n~~~~~~p~~~~-~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~  192 (931)
                      +.+..+++.|+|++|.|+. + +.++ .+.+|+.|++++|.++.++.    +..++.|++|++++|.++.+....  ...
T Consensus        15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~I~~i~~~l--~~~   86 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNRISSISEGL--DKN   86 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CHHH--HHH
T ss_pred             ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCCCCccccch--HHh
Confidence            4445567777777777763 2 2344 46677777777777665543    444555555555555555543211  113


Q ss_pred             CCCCCEEEcCCCCCCC
Q 002360          193 LHSLKELKLSFCELHH  208 (931)
Q Consensus       193 l~~L~~L~Ls~n~l~~  208 (931)
                      +++|++|++++|++..
T Consensus        87 lp~L~~L~L~~N~I~~  102 (175)
T PF14580_consen   87 LPNLQELYLSNNKISD  102 (175)
T ss_dssp             -TT--EEE-TTS---S
T ss_pred             CCcCCEEECcCCcCCC
Confidence            4444444444444433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.92  E-value=6.7e-10  Score=105.26  Aligned_cols=108  Identities=25%  Similarity=0.279  Sum_probs=27.2

Q ss_pred             CCCccEEECcCCccccccCCccc-CCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWM-NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      +..+++|+|++|.|+.+  +.+. .+.+|+.|++++|.++.. + .+..++.|++|++++|+++...+.....+++|+.|
T Consensus        18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            34566677777766652  2233 355666666666666632 2 45556666666666666664322212345666666


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCcccc
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFH  662 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~  662 (931)
                      ++++|++...-.-.....+++|+.|++.+|++.
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            666666642111111124555555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-09  Score=128.62  Aligned_cols=117  Identities=32%  Similarity=0.398  Sum_probs=88.3

Q ss_pred             eecc-cccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcc
Q 002360           84 KINP-SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETIS  162 (931)
Q Consensus        84 ~l~~-~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~  162 (931)
                      .++. .|..+++|++|||++|.--+ .+|+.++.+-+||+|+|+++.+. .+|..+++|+.|.+|++..+.......  .
T Consensus       561 ~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~--~  636 (889)
T KOG4658|consen  561 EISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP--G  636 (889)
T ss_pred             hcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc--c
Confidence            3443 36779999999999875433 59999999999999999999998 899999999999999999776433332  2


Q ss_pred             ccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCC
Q 002360          163 WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC  204 (931)
Q Consensus       163 ~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n  204 (931)
                      ....|++|++|.+..............+..+.+|+.+.....
T Consensus       637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             hhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            256799999999977664443444444556666666665443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.83  E-value=2.4e-09  Score=83.21  Aligned_cols=60  Identities=47%  Similarity=0.680  Sum_probs=37.0

Q ss_pred             CCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccc
Q 002360          766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL  825 (931)
Q Consensus       766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l  825 (931)
                      +|++|++++|+++...+..|..+++|++||+++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            455666666666644445566666666666666666655556666666666666666654

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=5.7e-09  Score=81.13  Aligned_cols=61  Identities=33%  Similarity=0.467  Sum_probs=56.6

Q ss_pred             cceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcC
Q 002360          741 NLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL  801 (931)
Q Consensus       741 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l  801 (931)
                      +.|+.|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3578999999999977778899999999999999999988889999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.69  E-value=4.2e-09  Score=117.70  Aligned_cols=225  Identities=24%  Similarity=0.214  Sum_probs=139.7

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++.+|+|..+.. .+..+++|++|++++|.|+...  .+..++.|+.|++++|.+...  ..+..++.|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhccc
Confidence            5677777777777776322 2566777888888888777443  345566677788888877643  3455577777778


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|.+. .+.......+.+++.+.+.+|.+...  ..+..+..+..+++..|.++..-+..  .+..            
T Consensus       169 l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~l~--~~~~------------  231 (414)
T KOG0531|consen  169 LSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEGLN--ELVM------------  231 (414)
T ss_pred             CCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccCcc--cchh------------
Confidence            8877776 34331012567777777777776632  22333444555566666665222110  0000            


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                    ..|+.+++++|++. .++..+..+..+..|+++.|++...-  .+.....
T Consensus       232 ------------------------------~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~  278 (414)
T KOG0531|consen  232 ------------------------------LHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GLERLPK  278 (414)
T ss_pred             ------------------------------HHHHHHhcccCccc-cccccccccccccccchhhccccccc--cccccch
Confidence                                          02467788888886 44456777788888888888876322  2455667


Q ss_pred             CCEEeccCCcCccc---Cccc-ccCCCCCCeeeCCCccccccCC
Q 002360          791 IESLDFSANQLSGQ---IPQS-MSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       791 L~~LdLs~N~l~~~---~p~~-l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      +..+..+.|.+...   .... ....+.++.+.+.+|+.....+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (414)
T KOG0531|consen  279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS  322 (414)
T ss_pred             HHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence            77777777776632   1121 4556778888888888776554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.68  E-value=2.4e-09  Score=119.73  Aligned_cols=217  Identities=24%  Similarity=0.306  Sum_probs=154.7

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +..++.+++..|.+.. +-..+..+.+|+.|++.+|+|.+. ...+..+++|++|++++|.|+...  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            4567777788888876 333466778899999999999844 333677889999999999998654  356677799999


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      +++|.+. .++..  ..+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+...-.  +..              
T Consensus       147 l~~N~i~-~~~~~--~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~--------------  206 (414)
T KOG0531|consen  147 LSGNLIS-DISGL--ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDL--------------  206 (414)
T ss_pred             eccCcch-hccCC--ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHH--------------
Confidence            9999987 44432  147888889999998885544 2 4677888888888888862211  111              


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCC--CCCEEEccCCcCcccCCcCccC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ--GLQSLNLSHNLFTGRIPDNIGV  787 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip~~l~~  787 (931)
                                                    ...+..+++..|.++-.-+  +..+.  +|+.+++++|++. .++..+..
T Consensus       207 ------------------------------~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~  253 (414)
T KOG0531|consen  207 ------------------------------LKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLEN  253 (414)
T ss_pred             ------------------------------HHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccc
Confidence                                          1112345788888863222  22333  3899999999998 66577888


Q ss_pred             cCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360          788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       788 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      ++.+..||+++|+++..-  .+...+.+..+....|.+.
T Consensus       254 ~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  254 LKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccccccchhhccccccc--cccccchHHHhccCcchhc
Confidence            999999999999998543  2455567777888888765

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.64  E-value=3.6e-08  Score=69.68  Aligned_cols=40  Identities=45%  Similarity=0.907  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhhcCC-CCCCCCCCCCCCC-CCCcCccceEec
Q 002360           14 ESEREALLKLKHDLR-DPSHRLASWIGDN-GDCCKWGGVLCG   53 (931)
Q Consensus        14 ~~~~~~ll~~k~~~~-d~~~~l~~w~~~~-~~~c~w~g~~c~   53 (931)
                      ++|++||++||+++. |+...+++|...+ .+||.|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            689999999999998 5778999999542 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.59  E-value=1.4e-09  Score=118.81  Aligned_cols=197  Identities=27%  Similarity=0.317  Sum_probs=126.4

Q ss_pred             CCCCEEecCCCcceecC-CCcccCCCCCCEEEccCCcCccccchhhccC-CCCcEEecCCCccc----------ccCchh
Q 002360          576 PRLRTLNLGNNNFTGSL-PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF-SILEALDVGENELV----------GSIPTW  643 (931)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N~l~----------~~~p~~  643 (931)
                      ++++.|.+-.-.-.+.. |-.+....+|++|.+.++.+...  ..+..+ ..|+.|.- +|.+.          |.+...
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC-~~Sl~Al~~v~ascggd~~ns  160 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLIC-HNSLDALRHVFASCGGDISNS  160 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhh-hccHHHHHHHHHHhccccccc
Confidence            34444444333222222 55666788999999999998741  112111 23444322 22221          111111


Q ss_pred             HHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360          644 IGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE  723 (931)
Q Consensus       644 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  723 (931)
                      .  -...|...+.+.|.+. .+..++.-++.|+.|||++|+++..-  .+                              
T Consensus       161 ~--~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~L------------------------------  205 (1096)
T KOG1859|consen  161 P--VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NL------------------------------  205 (1096)
T ss_pred             h--hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HH------------------------------
Confidence            1  1235777788888877 56667777889999999999987221  12                              


Q ss_pred             ceeEEeecchhhhhhhccceeEEEcccCcccccCCc-cccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~-~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                                    ..++.|+.|||++|.++ .+|. ...++. |+.|+|++|.++. .- .+.+|++|+.||+|+|-|+
T Consensus       206 --------------r~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~t-L~-gie~LksL~~LDlsyNll~  267 (1096)
T KOG1859|consen  206 --------------RRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTT-LR-GIENLKSLYGLDLSYNLLS  267 (1096)
T ss_pred             --------------Hhcccccccccccchhc-cccccchhhhh-heeeeecccHHHh-hh-hHHhhhhhhccchhHhhhh
Confidence                          23455689999999998 4443 233444 9999999999983 32 4789999999999999988


Q ss_pred             ccCc-ccccCCCCCCeeeCCCcccccc
Q 002360          803 GQIP-QSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       803 ~~~p-~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +.-. .-+..|.+|+.|+|.+|++.+-
T Consensus       268 ~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  268 EHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             cchhhhHHHHHHHHHHHhhcCCccccC
Confidence            6521 2356678899999999999874

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.46  E-value=6.8e-09  Score=89.93  Aligned_cols=85  Identities=25%  Similarity=0.386  Sum_probs=41.6

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      +.++|++|.++ .+|+++..++.|+.||++.|.+. ..|..+..|.++-.||..+|.+. .||..+---+.....++.++
T Consensus        80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne  156 (177)
T KOG4579|consen   80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE  156 (177)
T ss_pred             hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence            44555555554 44555555555555555555555 44444445555555555555554 34433222233333444444


Q ss_pred             cccccCCC
Q 002360          824 NLNGEIPS  831 (931)
Q Consensus       824 ~l~g~ip~  831 (931)
                      ++.+..|.
T Consensus       157 pl~~~~~~  164 (177)
T KOG4579|consen  157 PLGDETKK  164 (177)
T ss_pred             cccccCcc
Confidence            55554443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.44  E-value=8.2e-09  Score=112.92  Aligned_cols=109  Identities=29%  Similarity=0.366  Sum_probs=82.9

Q ss_pred             hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCee
Q 002360          739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  818 (931)
Q Consensus       739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L  818 (931)
                      .++.++.||||+|+++..-  .+..|+.|++|||++|.++ .+|..-..--.|..|.+++|.++..  ..+.+|++|+.|
T Consensus       185 ll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhhheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            3566799999999998543  7889999999999999999 6775322223499999999999844  357899999999


Q ss_pred             eCCCccccccCC--CCCccCcccccccCCCCCCCCC
Q 002360          819 NLSNNNLNGEIP--SSTQLQSFDASSFAGNDLCGAP  852 (931)
Q Consensus       819 ~ls~N~l~g~ip--~~~~~~~~~~~~~~~n~l~~~~  852 (931)
                      |+++|-|++---  .-..+..+....++||++|..|
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            999998876311  1123444556679999998654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=7e-09  Score=101.76  Aligned_cols=158  Identities=28%  Similarity=0.310  Sum_probs=85.3

Q ss_pred             CCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeE
Q 002360           94 HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL  173 (931)
Q Consensus        94 ~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L  173 (931)
                      .|++||||...++..++...+..+.+|+-|.|.++.+.+.+-..+.+-.+|+.|+|+.+.                    
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s--------------------  245 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS--------------------  245 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence            477788887777655566667777888888888887776666677777777777777653                    


Q ss_pred             EccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCcc-ccCC-CCCCCEEEccCCcCCC---CCcccccCCCCCCEEE
Q 002360          174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL-SSAN-FSSLTTLDLSGNQFQG---QIPSRLGNLTSLKHLD  248 (931)
Q Consensus       174 ~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~-l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~  248 (931)
                            --........+.+++.|++|++++|.+...... ...+ -++|+.|++++++-.-   .+.--..++++|.+||
T Consensus       246 ------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LD  319 (419)
T KOG2120|consen  246 ------GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLD  319 (419)
T ss_pred             ------ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeec
Confidence                  111112233455677777777777765433211 1111 1455666666553210   0111123445555555


Q ss_pred             cCCCc-ccccccccccCCCCCCEEeccCCc
Q 002360          249 LYSNQ-FNSAVLGWLSKLNDLEVLSLEDNR  277 (931)
Q Consensus       249 L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~  277 (931)
                      |++|. ++......|.+++.|++|.++.|.
T Consensus       320 LSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  320 LSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             cccccccCchHHHHHHhcchheeeehhhhc
Confidence            55443 222222233444455555554443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=1.4e-08  Score=99.59  Aligned_cols=158  Identities=19%  Similarity=0.208  Sum_probs=79.0

Q ss_pred             CCCEEEccCCcCCCC-CcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEE
Q 002360          219 SLTTLDLSGNQFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL  297 (931)
Q Consensus       219 ~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~  297 (931)
                      .|++|||+...|+.. +..-+..+.+|+.|.+.++++.+.+...+++-.+|+.|+++.                      
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm----------------------  243 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM----------------------  243 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc----------------------
Confidence            355555555544421 111233445555555555555555555555555555555554                      


Q ss_pred             ccCCCCCcccC-CcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccc---cccccccCCCCCCCE
Q 002360          298 LSWNDELGGKI-PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF---GHLTNQLGQFKRLNF  373 (931)
Q Consensus       298 L~~n~~~~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~  373 (931)
                         +..++... .-.+.+++.|..|+++++.+........-...+   ++|+.|+++++.-.   ..+..-...+++|..
T Consensus       244 ---~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his---e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~  317 (419)
T KOG2120|consen  244 ---CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS---ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH  317 (419)
T ss_pred             ---ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc---hhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence               43222211 112334444444444444444333222211111   56777777776521   111112356788888


Q ss_pred             EeccCCc-CCcCccccccCCCCCCEEEccCCc
Q 002360          374 LGLSNNQ-MDGSIPLSLGQMANLESLDLSNNK  404 (931)
Q Consensus       374 L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~  404 (931)
                      |||++|. ++...-..|.+++.|++|.++.|-
T Consensus       318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             eccccccccCchHHHHHHhcchheeeehhhhc
Confidence            8888764 333333456677888888888876

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.26  E-value=1.4e-07  Score=91.63  Aligned_cols=90  Identities=21%  Similarity=0.128  Sum_probs=40.4

Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccc-----cCCcccCCCCCCEEecCCCcceec----CCC
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG-----IPDCWMNWPRLRTLNLGNNNFTGS----LPM  594 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~  594 (931)
                      +.|+.+++..|++....-......+..-..|+++.+..|.|...     +-..+..+.+|+.|||.+|-++..    +..
T Consensus       157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~  236 (388)
T COG5238         157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD  236 (388)
T ss_pred             CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence            34555555555554332222222222234566666666655321     111223345666666666655521    111


Q ss_pred             cccCCCCCCEEEccCCcCc
Q 002360          595 SIGTLTSLRSLNLRNNRLS  613 (931)
Q Consensus       595 ~~~~l~~L~~L~L~~n~l~  613 (931)
                      .+...+.|+.|.+..|-++
T Consensus       237 al~~W~~lrEL~lnDClls  255 (388)
T COG5238         237 ALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             Hhcccchhhhccccchhhc
Confidence            2223334555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=5.6e-07  Score=88.69  Aligned_cols=88  Identities=20%  Similarity=0.190  Sum_probs=51.8

Q ss_pred             CCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCC-CcccccCCCCC
Q 002360          166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ-IPSRLGNLTSL  244 (931)
Q Consensus       166 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L  244 (931)
                      ..+.++.+|+.+|.+++..++...+..+|.|++|+++.|++.......-....+|++|-|.+..+.-. .-..+..+|.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            34556666666666666666666666777777777777766554332223456677777766655422 12234556666


Q ss_pred             CEEEcCCCc
Q 002360          245 KHLDLYSNQ  253 (931)
Q Consensus       245 ~~L~L~~n~  253 (931)
                      +.|.++.|.
T Consensus       149 telHmS~N~  157 (418)
T KOG2982|consen  149 TELHMSDNS  157 (418)
T ss_pred             hhhhhccch
Confidence            666666663

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=2e-07  Score=80.96  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccccc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS  810 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~  810 (931)
                      +.|+++.|.+. ..|+.+..|.++..|+..+|.+. +||-.+-.-+..-..++.++.+.+.-|..+.
T Consensus       103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq  167 (177)
T KOG4579|consen  103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ  167 (177)
T ss_pred             hhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence            45555555555 44555555666666666666665 5554322222222334455666655554433

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.04  E-value=1.4e-05  Score=85.44  Aligned_cols=77  Identities=14%  Similarity=0.178  Sum_probs=51.7

Q ss_pred             ccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCc
Q 002360          596 IGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL  675 (931)
Q Consensus       596 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  675 (931)
                      +..+..++.|++++|.++. +|.   -.++|+.|.+++|.-...+|..+   .++|+.|++++|.....+|      ++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP------~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLP------ESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccc------ccc
Confidence            4456788999999998773 452   23568999998865444777654   3578899998884322444      346


Q ss_pred             CEEEccCCcc
Q 002360          676 QILDVAYNSL  685 (931)
Q Consensus       676 ~~L~Ls~N~l  685 (931)
                      +.|++++|..
T Consensus       115 e~L~L~~n~~  124 (426)
T PRK15386        115 RSLEIKGSAT  124 (426)
T ss_pred             ceEEeCCCCC
Confidence            7777776654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=1.2e-06  Score=86.32  Aligned_cols=63  Identities=17%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             CCCCCEEeccCCcCCcCc-cccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCcee
Q 002360          368 FKRLNFLGLSNNQMDGSI-PLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL  430 (931)
Q Consensus       368 l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l  430 (931)
                      +|++..+-+..|++...- ...+..+|.+.-|+|+.+++-.-..-..+.+++.|..+.+..+.+
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            556666666666554321 223444556666666666664333333444555555555554443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.92  E-value=6.9e-06  Score=58.07  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=16.7

Q ss_pred             CCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       766 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                      +|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3445555555554 34444455555555555555544

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.91  E-value=7.7e-06  Score=79.79  Aligned_cols=164  Identities=21%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             cCCCCCCCEEEccCCcccc--cccCccccCCCCCCCeEEccCcccCCCCchH-----------HHhccCCCCCEEEcCCC
Q 002360          138 LGNLSNLQYLDLSGVYFEL--HAETISWLSGLSLLEHLYISFVNLSKASDSL-----------LVINSLHSLKELKLSFC  204 (931)
Q Consensus       138 ~~~L~~L~~L~Ls~n~~~~--~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-----------~~l~~l~~L~~L~Ls~n  204 (931)
                      +-+|++|+..+||.|-+..  .+.....+.+-+.|+||.+++|.+.......           .....-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            3455555555555554421  1222223445555555555555554442211           11234566666666666


Q ss_pred             CCCCCCccc----cCCCCCCCEEEccCCcCCCCC-----cccccCCCCCCEEEcCCCccccccc----ccccCCCCCCEE
Q 002360          205 ELHHFPLLS----SANFSSLTTLDLSGNQFQGQI-----PSRLGNLTSLKHLDLYSNQFNSAVL----GWLSKLNDLEVL  271 (931)
Q Consensus       205 ~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L  271 (931)
                      ++...+...    +..-.+|+++.+..|.|...-     ...+..+.+|+.|++..|.++....    ..+...+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            665554321    122246667777666654221     1123445677777777776654322    233344557777


Q ss_pred             eccCCccccccCccc-----cCCCCCccEEEccCC
Q 002360          272 SLEDNRLQGDISSLG-----LDNLTSIQKLLLSWN  301 (931)
Q Consensus       272 ~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~n  301 (931)
                      .+.+|-++..-....     -...|+|..|...+|
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence            777776653222111     123567777777777

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.79  E-value=1.8e-05  Score=55.99  Aligned_cols=38  Identities=45%  Similarity=0.724  Sum_probs=32.6

Q ss_pred             CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360          789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      ++|++|++++|+++ .+|..++++++|++|++++|+++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            57999999999999 567789999999999999999873

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.76  E-value=1.6e-06  Score=89.73  Aligned_cols=233  Identities=17%  Similarity=0.110  Sum_probs=109.4

Q ss_pred             CCcEeeCCCCCCCC-CCchhhhhcCCCCceeecccccc-cccC-CcccCCCCCCCEEEccCCc-ccccccCccccCCCCC
Q 002360           94 HLVHLDLSGNDFQG-IQIPKYLASLVNLRYLNLSQARF-TGMI-PHQLGNLSNLQYLDLSGVY-FELHAETISWLSGLSL  169 (931)
Q Consensus        94 ~L~~L~Ls~n~~~~-~~l~~~l~~l~~L~~L~Ls~n~~-~~~~-p~~~~~L~~L~~L~Ls~n~-~~~~~~~~~~l~~l~~  169 (931)
                      .|+.|.+.++.-.+ .++-..-.+++++++|++.+|.. ++.. -..-..+.+|++|+|..|. ++... ....-..+++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~-Lk~la~gC~k  217 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS-LKYLAEGCRK  217 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH-HHHHHHhhhh
Confidence            45555665553221 12334445566666666666542 1111 1112346666666666532 11100 0011345666


Q ss_pred             CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc--cccCCCCCCCEEEccCCcC-CCCCcccc-cCCCCCC
Q 002360          170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL--LSSANFSSLTTLDLSGNQF-QGQIPSRL-GNLTSLK  245 (931)
Q Consensus       170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~l-~~l~~L~  245 (931)
                      |++++++++.-..-........++..++.+.+.+|.-.+...  ..-..+..+.++++..|.. ++..-..+ ..+..||
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            666666665443333333334556666666666553221111  1112344455566555532 22111111 2456777


Q ss_pred             EEEcCCCcc-cccccccc-cCCCCCCEEeccCCccccccCcccc-CCCCCccEEEccCCCCCccc-CCcccCCCCCCcEE
Q 002360          246 HLDLYSNQF-NSAVLGWL-SKLNDLEVLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGK-IPTSFGKLCKLTSF  321 (931)
Q Consensus       246 ~L~L~~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L  321 (931)
                      .|+.+++.. +......+ .+..+|++|.++.++--++.-...+ .+++.|+.+++..+..+... +.+.-.+++.|+.+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l  377 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL  377 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence            777776543 22222222 3567788888877764322222212 35667777777776333222 22233355566666


Q ss_pred             EcCCCc
Q 002360          322 SMASTK  327 (931)
Q Consensus       322 ~l~~~~  327 (931)
                      .++++.
T Consensus       378 slshce  383 (483)
T KOG4341|consen  378 SLSHCE  383 (483)
T ss_pred             Chhhhh
Confidence            655554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.57  E-value=0.0002  Score=76.77  Aligned_cols=92  Identities=18%  Similarity=0.230  Sum_probs=63.0

Q ss_pred             ccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC-cccccCchhHHhhcCc
Q 002360          572 WMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN-ELVGSIPTWIGERFSR  650 (931)
Q Consensus       572 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~  650 (931)
                      +..+.+++.|++++|.++ .+| .+  .++|++|.+++|.-...+|+.+  .++|+.|++++| .+. .+|.       +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------c
Confidence            445688999999999888 556 22  3579999999865555677655  368999999999 444 5553       5


Q ss_pred             CcEEEccCccccccCCcccCCC-CCcCEEEccC
Q 002360          651 LMILILRSNKFHGDFPIQLCRL-ASLQILDVAY  682 (931)
Q Consensus       651 L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~  682 (931)
                      |+.|+++++....     +..+ ++|+.|.+.+
T Consensus       114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~  141 (426)
T PRK15386        114 VRSLEIKGSATDS-----IKNVPNGLTSLSINS  141 (426)
T ss_pred             cceEEeCCCCCcc-----cccCcchHhheeccc
Confidence            7788887765431     1122 2456666644

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=4.4e-05  Score=89.11  Aligned_cols=151  Identities=25%  Similarity=0.315  Sum_probs=91.7

Q ss_pred             cCCcEeeCCCCCCCCCCchhhh-hcCCCCceeeccccccccc-CCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360           93 KHLVHLDLSGNDFQGIQIPKYL-ASLVNLRYLNLSQARFTGM-IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL  170 (931)
Q Consensus        93 ~~L~~L~Ls~n~~~~~~l~~~l-~~l~~L~~L~Ls~n~~~~~-~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  170 (931)
                      .+|++||++|...-....|..+ ..||.|+.|.+++-.+... .-....++++|+.||+|+++++.+    ..++.|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~LknL  197 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----SGISRLKNL  197 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----HHHhccccH
Confidence            4677777777543322233333 3467777777777555321 223345677777777777776655    235777777


Q ss_pred             CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc------cccCCCCCCCEEEccCCcCCCCCcccc-cCCCC
Q 002360          171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL------LSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTS  243 (931)
Q Consensus       171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~  243 (931)
                      +.|.+.+-.+....+.. .+-.+++|+.||+|.......+.      +.-..+|+|+.||.+++.+....-+.+ ...++
T Consensus       198 q~L~mrnLe~e~~~~l~-~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLI-DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHhccCCCCCchhhHH-HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            77777777776654433 34568888888888776554441      122357899999999887765433322 23344


Q ss_pred             CCEEE
Q 002360          244 LKHLD  248 (931)
Q Consensus       244 L~~L~  248 (931)
                      |+.+.
T Consensus       277 L~~i~  281 (699)
T KOG3665|consen  277 LQQIA  281 (699)
T ss_pred             Hhhhh
Confidence            44443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.51  E-value=0.00018  Score=67.70  Aligned_cols=85  Identities=25%  Similarity=0.206  Sum_probs=45.0

Q ss_pred             cCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCC-CcccccCCCCCCEEEcCCCcccccc---cccccCCCC
Q 002360          192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAV---LGWLSKLND  267 (931)
Q Consensus       192 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~  267 (931)
                      .++.|.+|.+++|+|+.+.+..-.-+++|.+|.+.+|.+... .-.-+..++.|+.|.+-+|.++...   .-.+..+++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~  141 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS  141 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence            455555555666666655554444555666666666655421 0122455566666666666554321   223445556


Q ss_pred             CCEEeccCC
Q 002360          268 LEVLSLEDN  276 (931)
Q Consensus       268 L~~L~L~~n  276 (931)
                      |++||.+..
T Consensus       142 l~~LDF~kV  150 (233)
T KOG1644|consen  142 LRTLDFQKV  150 (233)
T ss_pred             ceEeehhhh
Confidence            666655544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.46  E-value=1.1e-05  Score=83.91  Aligned_cols=265  Identities=22%  Similarity=0.165  Sum_probs=153.7

Q ss_pred             ccCccCCcEeeCCCCC-CCCCCchhhhhcCCCCceeeccccc-ccccCC-cccCCCCCCCEEEccCCcccccccCccccC
Q 002360           89 LLELKHLVHLDLSGND-FQGIQIPKYLASLVNLRYLNLSQAR-FTGMIP-HQLGNLSNLQYLDLSGVYFELHAETISWLS  165 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~-~~~~~l~~~l~~l~~L~~L~Ls~n~-~~~~~p-~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~  165 (931)
                      ..++++++.|++.++. ++....-..-..++.|++|+|..|. ++...- .-...+++|++|+++.|.--.-...-....
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r  239 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR  239 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence            4578888888888874 4443333344667889999999853 332222 234578899999999875322111112245


Q ss_pred             CCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCC-CCCCCcc-ccCCCCCCCEEEccCCcCCCC-Ccccc-cCC
Q 002360          166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE-LHHFPLL-SSANFSSLTTLDLSGNQFQGQ-IPSRL-GNL  241 (931)
Q Consensus       166 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l  241 (931)
                      ++..++.+.+.++.-.........-+.++.+.++++..|. +++.... .-..+..|+.|+.+++.-.+. .-.++ .+.
T Consensus       240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~  319 (483)
T KOG4341|consen  240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHC  319 (483)
T ss_pred             cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCC
Confidence            6666777766655433333333334456667777766664 3333221 123567788888877654321 11222 355


Q ss_pred             CCCCEEEcCCCc-ccccccccc-cCCCCCCEEeccCCccccccC-ccccCCCCCccEEEccCCCCCcccCCc----ccCC
Q 002360          242 TSLKHLDLYSNQ-FNSAVLGWL-SKLNDLEVLSLEDNRLQGDIS-SLGLDNLTSIQKLLLSWNDELGGKIPT----SFGK  314 (931)
Q Consensus       242 ~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~~~----~~~~  314 (931)
                      .+|+.|.++.++ ++..-...+ .+.+.|+.+++..+....+-. ...-.+++.|+++.+++|..+++..-.    .-..
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            788888888776 333222223 256778888888775532221 111346788888888888555544222    2234


Q ss_pred             CCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCccc
Q 002360          315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI  357 (931)
Q Consensus       315 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l  357 (931)
                      +..|..+.++++.....  ..+..+..|  ++|+.+++.+++-
T Consensus       400 ~~~l~~lEL~n~p~i~d--~~Le~l~~c--~~Leri~l~~~q~  438 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITD--ATLEHLSIC--RNLERIELIDCQD  438 (483)
T ss_pred             ccccceeeecCCCCchH--HHHHHHhhC--cccceeeeechhh
Confidence            66788888888765432  223333333  6888888888763

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.43  E-value=0.0001  Score=86.05  Aligned_cols=151  Identities=25%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             CCCceeeccccccc-ccCCcccC-CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCC
Q 002360          118 VNLRYLNLSQARFT-GMIPHQLG-NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS  195 (931)
Q Consensus       118 ~~L~~L~Ls~n~~~-~~~p~~~~-~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~  195 (931)
                      .+|++||+++.... ..-|..++ .|+.|+.|.+++-.+... +....+.++++|..||+|+++++.+    ..+..+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl----~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL----SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc----HHHhcccc
Confidence            67999999986532 22333443 589999999987543221 1233468899999999999999987    45789999


Q ss_pred             CCEEEcCCCCCCCC-CccccCCCCCCCEEEccCCcCCCCC--c----ccccCCCCCCEEEcCCCcccccccccc-cCCCC
Q 002360          196 LKELKLSFCELHHF-PLLSSANFSSLTTLDLSGNQFQGQI--P----SRLGNLTSLKHLDLYSNQFNSAVLGWL-SKLND  267 (931)
Q Consensus       196 L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~  267 (931)
                      |++|.+.+=.+... ....+.++++|++||+|........  .    +.-..+|+|+.||.+++.+.....+.+ ..-++
T Consensus       197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~  276 (699)
T KOG3665|consen  197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN  276 (699)
T ss_pred             HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence            99999988877763 3466788999999999987665322  1    112358999999999988866543332 33445


Q ss_pred             CCEEec
Q 002360          268 LEVLSL  273 (931)
Q Consensus       268 L~~L~L  273 (931)
                      |+.+.+
T Consensus       277 L~~i~~  282 (699)
T KOG3665|consen  277 LQQIAA  282 (699)
T ss_pred             Hhhhhh
Confidence            554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00013  Score=68.55  Aligned_cols=106  Identities=25%  Similarity=0.227  Sum_probs=61.6

Q ss_pred             CCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeE
Q 002360           94 HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHL  173 (931)
Q Consensus        94 ~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L  173 (931)
                      ....+||++|.+...   ..|.++++|.+|.|++|+|+.+.|.--..+++|+.|.|.+|.+..+.+.             
T Consensus        43 ~~d~iDLtdNdl~~l---~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-------------  106 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL---DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-------------  106 (233)
T ss_pred             ccceecccccchhhc---ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-------------
Confidence            345566666666532   3456666677777777766655554444455666666666655443221             


Q ss_pred             EccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc---cccCCCCCCCEEEccCCc
Q 002360          174 YISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL---LSSANFSSLTTLDLSGNQ  229 (931)
Q Consensus       174 ~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~  229 (931)
                                    ..+..+|.|++|.+-+|.......   ..+..+|+|++||...-.
T Consensus       107 --------------~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  107 --------------DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             --------------chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence                          123455666666666665554432   345677888888877543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=7.8e-05  Score=73.30  Aligned_cols=114  Identities=26%  Similarity=0.252  Sum_probs=76.1

Q ss_pred             eeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccc--cccccCCcccCCCCCCCEEEccCCcccccccC
Q 002360           83 GKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA--RFTGMIPHQLGNLSNLQYLDLSGVYFELHAET  160 (931)
Q Consensus        83 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n--~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~  160 (931)
                      |.+....-.+..|+.|++.+..++..   ..+..+++|+.|.++.|  ++++.++....++++|++|++++|++.. ...
T Consensus        33 g~~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lst  108 (260)
T KOG2739|consen   33 GKLGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LST  108 (260)
T ss_pred             CCcccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccc
Confidence            34555555566777777777777633   35677889999999999  6776677777778999999999998875 344


Q ss_pred             ccccCCCCCCCeEEccCcccCCCCchH-HHhccCCCCCEEE
Q 002360          161 ISWLSGLSLLEHLYISFVNLSKASDSL-LVINSLHSLKELK  200 (931)
Q Consensus       161 ~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~L~~L~  200 (931)
                      +..+..+.+|..|++.+|..+...+.. ..|.-+++|+.|+
T Consensus       109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            444666677777777776666553322 2233344444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.12  E-value=0.0016  Score=59.65  Aligned_cols=122  Identities=19%  Similarity=0.223  Sum_probs=48.4

Q ss_pred             CcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcC
Q 002360          570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS  649 (931)
Q Consensus       570 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  649 (931)
                      .+|.++++|+.+.+.+ .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence            3455555566666553 344344455555656666666553 4444445555665566666654 322 34444443456


Q ss_pred             cCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360          650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA  698 (931)
Q Consensus       650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  698 (931)
                      +|+.+++..+ +...-...+.+. .|+.+.+.. .+......+|.++++
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            6666666543 333334445554 666666554 333333344544443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.86  E-value=0.0028  Score=57.95  Aligned_cols=119  Identities=18%  Similarity=0.201  Sum_probs=67.2

Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .+++|+.+.+.. .+..+...+|.++++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            356788888875 577777778888888999999875 6655666788888899999976 5554556678889999999


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCc
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL  675 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  675 (931)
                      ++..+ +. .++...+.++ +|+.+.+.. .+...-...|.++++|
T Consensus        87 ~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             ccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            99776 54 5666666565 888888876 4443445566666555

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00045  Score=68.08  Aligned_cols=109  Identities=24%  Similarity=0.237  Sum_probs=52.5

Q ss_pred             hhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhcc
Q 002360          113 YLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINS  192 (931)
Q Consensus       113 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~  192 (931)
                      ..-.+..|+.|++.+..++..  ..+-.|++|++|+++.|+............                          .
T Consensus        38 l~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--------------------------~   89 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAE--------------------------K   89 (260)
T ss_pred             ccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhh--------------------------h
Confidence            334455566666666555421  234456666666666664332222222223                          3


Q ss_pred             CCCCCEEEcCCCCCCCCC-ccccCCCCCCCEEEccCCcCCCCC---cccccCCCCCCEEEc
Q 002360          193 LHSLKELKLSFCELHHFP-LLSSANFSSLTTLDLSGNQFQGQI---PSRLGNLTSLKHLDL  249 (931)
Q Consensus       193 l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L  249 (931)
                      +|+|++|++++|++..+. ...+..+.+|..|++.+|..+...   -..|.-+++|+.|+-
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            355555555555544322 123444555666666665544311   122444566666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.98  E-value=0.00025  Score=69.80  Aligned_cols=16  Identities=44%  Similarity=0.385  Sum_probs=6.9

Q ss_pred             cCCCCCCEEEcCCCcc
Q 002360          239 GNLTSLKHLDLYSNQF  254 (931)
Q Consensus       239 ~~l~~L~~L~L~~n~l  254 (931)
                      .++++|+.|.|..|..
T Consensus        85 knlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPC  100 (388)
T ss_pred             hcCchhhhHhhccCCc
Confidence            3444444444444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.85  E-value=0.00052  Score=67.65  Aligned_cols=58  Identities=21%  Similarity=0.261  Sum_probs=27.1

Q ss_pred             ccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcc
Q 002360           92 LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF  154 (931)
Q Consensus        92 l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~  154 (931)
                      +...+.|+.=|+.+++++   ...+++.|++|.||-|.|+..  ..+..|++|+.|.|..|.|
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I   75 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI   75 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc
Confidence            344455555555555432   234455555555555555422  1234444444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.84  E-value=0.0038  Score=36.54  Aligned_cols=19  Identities=53%  Similarity=0.805  Sum_probs=9.1

Q ss_pred             CCEEeccCCcCcccCccccc
Q 002360          791 IESLDFSANQLSGQIPQSMS  810 (931)
Q Consensus       791 L~~LdLs~N~l~~~~p~~l~  810 (931)
                      |++||+++|+++ .+|.+|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            445555555554 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.68  E-value=0.0013  Score=75.94  Aligned_cols=35  Identities=31%  Similarity=0.222  Sum_probs=17.4

Q ss_pred             CCCCceeeccccccccc--CCcccCCCCCCCEEEccC
Q 002360          117 LVNLRYLNLSQARFTGM--IPHQLGNLSNLQYLDLSG  151 (931)
Q Consensus       117 l~~L~~L~Ls~n~~~~~--~p~~~~~L~~L~~L~Ls~  151 (931)
                      ++.|+.|.+..+.-...  +-.....+++|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            45566665555532222  223344555666666654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.60  E-value=0.0023  Score=73.94  Aligned_cols=177  Identities=25%  Similarity=0.134  Sum_probs=104.4

Q ss_pred             cCccCCcEeeCCCC-CCCCCCchhhhhcCCCCceeecccc-cccccC----CcccCCCCCCCEEEccCCcccccccCccc
Q 002360           90 LELKHLVHLDLSGN-DFQGIQIPKYLASLVNLRYLNLSQA-RFTGMI----PHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        90 ~~l~~L~~L~Ls~n-~~~~~~l~~~l~~l~~L~~L~Ls~n-~~~~~~----p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      ..++.|+.|.+.++ .+....+-.....+++|+.|+++++ ......    ......+.+|+.|+++++.. .....+..
T Consensus       185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-isd~~l~~  263 (482)
T KOG1947|consen  185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-VTDIGLSA  263 (482)
T ss_pred             hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-cCchhHHH
Confidence            34788999999877 3443223456788899999999873 222122    23445678999999998763 11122222


Q ss_pred             c-CCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCC--ccccCCCCCCCEEEccCCcCCCCCcccccC
Q 002360          164 L-SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP--LLSSANFSSLTTLDLSGNQFQGQIPSRLGN  240 (931)
Q Consensus       164 l-~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  240 (931)
                      + ..+++|++|.+..+.-.+..........++.|++|++++|......  .....++++|+.|.+.....          
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------  333 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------  333 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence            3 3388999999777764333455566678899999999988754221  11234466666655443321          


Q ss_pred             CCCCCEEEcCCCcc---cccccccccCCCCCCEEeccCCc
Q 002360          241 LTSLKHLDLYSNQF---NSAVLGWLSKLNDLEVLSLEDNR  277 (931)
Q Consensus       241 l~~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~L~~n~  277 (931)
                      +..++.+.+.+...   .....-....+++++.+.+..+.
T Consensus       334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            33344443333221   11222234566677777776665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.46  E-value=0.0051  Score=36.00  Aligned_cols=20  Identities=40%  Similarity=0.536  Sum_probs=10.7

Q ss_pred             CCEEEccCCcCcccCCcCccC
Q 002360          767 LQSLNLSHNLFTGRIPDNIGV  787 (931)
Q Consensus       767 L~~L~Ls~N~l~~~ip~~l~~  787 (931)
                      |++|||++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            455555555555 55554443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.80  E-value=0.00047  Score=77.15  Aligned_cols=186  Identities=20%  Similarity=0.234  Sum_probs=97.8

Q ss_pred             CcEEeCCCCCCCCCcchhHHh---ccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhh
Q 002360          468 LNDLDISSTRISDKIPRAFWN---SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLI  544 (931)
Q Consensus       468 L~~L~Ls~n~i~~~~~~~~~~---~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~  544 (931)
                      +..+.+.+|.+.+.....+..   ..+.|..|++++|.+.                                 +..-..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~---------------------------------~~g~~~l  135 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG---------------------------------DEGARLL  135 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc---------------------------------cHhHHHH
Confidence            566677777766554443333   2344555555555543                                 3333333


Q ss_pred             hccCCCC-CCccEEECcCCccccc----cCCcccCCCCCCEEecCCCccee----cCCCcc----cCCCCCCEEEccCCc
Q 002360          545 CQGENFS-KNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTG----SLPMSI----GTLTSLRSLNLRNNR  611 (931)
Q Consensus       545 ~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~----~~l~~L~~L~L~~n~  611 (931)
                      +.++... ..+++|++..|.++..    +...+.....++.++++.|.+..    .++..+    ....++++|.+++|.
T Consensus       136 ~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~  215 (478)
T KOG4308|consen  136 CEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG  215 (478)
T ss_pred             HhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC
Confidence            3333332 4455556655555432    23344445566666666666531    112222    235667777777777


Q ss_pred             Ccccc----chhhccCCC-CcEEecCCCcccccCchhHHhh---c-CcCcEEEccCccccccC----CcccCCCCCcCEE
Q 002360          612 LSGVI----PTSFKNFSI-LEALDVGENELVGSIPTWIGER---F-SRLMILILRSNKFHGDF----PIQLCRLASLQIL  678 (931)
Q Consensus       612 l~~~~----p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~~---l-~~L~~L~L~~n~l~~~~----p~~l~~l~~L~~L  678 (931)
                      ++...    ...+...+. +..|++.+|++.+..-..+...   + ..+++++++.|.++..-    ...+..++.++.+
T Consensus       216 ~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l  295 (478)
T KOG4308|consen  216 VTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEEL  295 (478)
T ss_pred             cChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHh
Confidence            66321    122333444 5567777777654322222222   2 34577777777776542    3344556677788


Q ss_pred             EccCCccc
Q 002360          679 DVAYNSLL  686 (931)
Q Consensus       679 ~Ls~N~l~  686 (931)
                      .+++|.+.
T Consensus       296 ~l~~n~l~  303 (478)
T KOG4308|consen  296 SLSNNPLT  303 (478)
T ss_pred             hcccCccc
Confidence            88887775

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.12  E-value=0.00061  Score=76.23  Aligned_cols=166  Identities=24%  Similarity=0.181  Sum_probs=116.2

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC----CcccCC-CCCCEEecCCCcceec----CCCcc
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP----DCWMNW-PRLRTLNLGNNNFTGS----LPMSI  596 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l-~~L~~L~Ls~n~l~~~----~p~~~  596 (931)
                      +..+.+.+|.+.......++..+.....|+.|++++|.+.+...    ..+... ..+++|++..|.++..    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            56677778888877778888888889999999999999975321    223332 5678899999988744    44556


Q ss_pred             cCCCCCCEEEccCCcCcc----ccchhhc----cCCCCcEEecCCCcccccCchhH---HhhcCc-CcEEEccCcccccc
Q 002360          597 GTLTSLRSLNLRNNRLSG----VIPTSFK----NFSILEALDVGENELVGSIPTWI---GERFSR-LMILILRSNKFHGD  664 (931)
Q Consensus       597 ~~l~~L~~L~L~~n~l~~----~~p~~~~----~l~~L~~L~L~~N~l~~~~p~~~---~~~l~~-L~~L~L~~n~l~~~  664 (931)
                      .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++...-..+   ....++ +..|++.+|.+...
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            668899999999998841    2333344    47789999999998762211111   113344 77799999998754


Q ss_pred             ----CCcccCCC-CCcCEEEccCCccccccCc
Q 002360          665 ----FPIQLCRL-ASLQILDVAYNSLLGTIPR  691 (931)
Q Consensus       665 ----~p~~l~~l-~~L~~L~Ls~N~l~~~~p~  691 (931)
                          ....+..+ ..++.++++.|.++..-..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~  280 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVR  280 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchH
Confidence                23344455 6789999999999865443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.01  E-value=0.09  Score=28.43  Aligned_cols=11  Identities=45%  Similarity=0.733  Sum_probs=3.3

Q ss_pred             CCEEEccCCcC
Q 002360          767 LQSLNLSHNLF  777 (931)
Q Consensus       767 L~~L~Ls~N~l  777 (931)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            34444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.73  E-value=0.012  Score=56.73  Aligned_cols=83  Identities=18%  Similarity=0.158  Sum_probs=60.8

Q ss_pred             CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360           56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP  135 (931)
Q Consensus        56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  135 (931)
                      -.+|+.||++.+             -.-.+...+..++.+..||++.|.+.  .+|..++....++.+++..|..+ ..|
T Consensus        41 ~kr~tvld~~s~-------------r~vn~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p  104 (326)
T KOG0473|consen   41 FKRVTVLDLSSN-------------RLVNLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQP  104 (326)
T ss_pred             cceeeeehhhhh-------------HHHhhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCC
Confidence            357888887764             12234445666777888888888877  46788888888888888887766 778


Q ss_pred             cccCCCCCCCEEEccCCcc
Q 002360          136 HQLGNLSNLQYLDLSGVYF  154 (931)
Q Consensus       136 ~~~~~L~~L~~L~Ls~n~~  154 (931)
                      .+++++++++++++-++.+
T Consensus       105 ~s~~k~~~~k~~e~k~~~~  123 (326)
T KOG0473|consen  105 KSQKKEPHPKKNEQKKTEF  123 (326)
T ss_pred             ccccccCCcchhhhccCcc
Confidence            8888888888888877653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.28  E-value=0.12  Score=27.90  Aligned_cols=13  Identities=38%  Similarity=0.744  Sum_probs=6.7

Q ss_pred             CCCEEeccCCcCc
Q 002360          790 SIESLDFSANQLS  802 (931)
Q Consensus       790 ~L~~LdLs~N~l~  802 (931)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            5666777777665

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.09  E-value=0.0088  Score=57.66  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=71.2

Q ss_pred             ccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeee
Q 002360          740 LNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN  819 (931)
Q Consensus       740 ~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~  819 (931)
                      ....+.||++.|++. ..-..|.-++.|..||+|.|++. ..|..++.+..+..+++..|..+ ..|.++..++.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            344578999999986 45566777888899999999998 88888999999999999999988 7889999999999999


Q ss_pred             CCCcccc
Q 002360          820 LSNNNLN  826 (931)
Q Consensus       820 ls~N~l~  826 (931)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9998865

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.74  E-value=0.41  Score=29.23  Aligned_cols=14  Identities=50%  Similarity=0.684  Sum_probs=7.4

Q ss_pred             CCCCEEeccCCcCc
Q 002360          789 RSIESLDFSANQLS  802 (931)
Q Consensus       789 ~~L~~LdLs~N~l~  802 (931)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.74  E-value=0.41  Score=29.23  Aligned_cols=14  Identities=50%  Similarity=0.684  Sum_probs=7.4

Q ss_pred             CCCCEEeccCCcCc
Q 002360          789 RSIESLDFSANQLS  802 (931)
Q Consensus       789 ~~L~~LdLs~N~l~  802 (931)
                      ++|+.|+|++|+|+
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.31  E-value=0.55  Score=28.66  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=13.0

Q ss_pred             CCCcEEecCCCcccccCchhHH
Q 002360          624 SILEALDVGENELVGSIPTWIG  645 (931)
Q Consensus       624 ~~L~~L~L~~N~l~~~~p~~~~  645 (931)
                      ++|+.|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665544

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.31  E-value=0.55  Score=28.66  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=13.0

Q ss_pred             CCCcEEecCCCcccccCchhHH
Q 002360          624 SILEALDVGENELVGSIPTWIG  645 (931)
Q Consensus       624 ~~L~~L~L~~N~l~~~~p~~~~  645 (931)
                      ++|+.|+|++|++. .+|...+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666666666666 5665544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.84  E-value=0.18  Score=48.15  Aligned_cols=84  Identities=20%  Similarity=0.142  Sum_probs=51.1

Q ss_pred             CCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCcccc-CCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360          243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF  321 (931)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  321 (931)
                      .++.++-++..+..+...-+..++.++.|.+.+|.-.++.--..+ +-.++|+.|+++.|+.++......+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            455566666666555555556666666666666643222111111 1356788888888888877777777777777777


Q ss_pred             EcCCC
Q 002360          322 SMAST  326 (931)
Q Consensus       322 ~l~~~  326 (931)
                      .+.+-
T Consensus       182 ~l~~l  186 (221)
T KOG3864|consen  182 HLYDL  186 (221)
T ss_pred             HhcCc
Confidence            66543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=83.70  E-value=0.23  Score=29.66  Aligned_cols=15  Identities=40%  Similarity=0.698  Sum_probs=6.4

Q ss_pred             CCCCEEeccCCcCcc
Q 002360          789 RSIESLDFSANQLSG  803 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~  803 (931)
                      ++|++|||++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            345555555555443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	931
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-35
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-35
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		5e-13
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-12
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-07
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		3e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		3e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-05
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		5e-05
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		5e-05
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		6e-05
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-05
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-05
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		1e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		1e-04
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		4e-04
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		4e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  148 bits (373), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 183/679 (26%), Positives = 275/679 (40%), Gaps = 60/679 (8%)
Query: 218 SSLTTLDLSGNQFQGQIPS--RLGNLTSLKHLDLYSN--QFNSAVLGWLSKLNDLEVLSL 273
           +SLT+LDLS N   G + +   LG+ + LK L++ SN   F   V G L KLN LEVL L
Sbjct: 97  ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 274 EDNRLQGD--ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
             N + G   +  +  D    ++ L +S N ++ G +  S  +   L    ++S   S  
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFSTG 212
Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
           I         C A  L+ L + G ++ G  +  +     L  L +S+NQ  G IP     
Sbjct: 213 IP----FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 264
Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
           + +L+ L L+ NK  G + +        L     + N     + P +     L  L L S
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 452 CHLGPRFPLWLQLQ-KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
            +     P+   L+ + L  LD+S    S ++P +  N       L++S N        F
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------F 377
Query: 511 DSPSMP-LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
             P +P L   P   L  ++ L NN  +G I   +    N S+ +  L LS N+ S  IP
Sbjct: 378 SGPILPNLCQNPKNTLQELY-LQNNGFTGKIPPTL---SNCSELVS-LHLSFNYLSGTIP 432
Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEAL 629
               +  +LR L L  N   G +P  +                 G IP+   N + L  +
Sbjct: 433 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 492
Query: 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI 689
            +  N L G IP WIG R   L IL L +N F G+ P +L    SL  LD+  N   GTI
Sbjct: 493 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 690 PRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS--LVMKGFLVEYNSILNLVRSID 747
           P  +   S    A+       +     G  K        L  +G   E  + L+     +
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLF------------------------TGRIPD 783
           I+   + G       N   +  L++S+N+                         +G IPD
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 784 NIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSF 843
            +G +R +  LD S+N+L G+IPQ+M                 G IP   Q ++F  + F
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 731
Query: 844 AGND-LCGAPLSSCTEKNA 861
             N  LCG PL  C   NA
Sbjct: 732 LNNPGLCGYPLPRCDPSNA 750

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 183/679 (26%), Positives = 275/679 (40%), Gaps = 60/679 (8%)
Query: 218 SSLTTLDLSGNQFQGQIPS--RLGNLTSLKHLDLYSN--QFNSAVLGWLSKLNDLEVLSL 273
           +SLT+LDLS N   G + +   LG+ + LK L++ SN   F   V G L KLN LEVL L
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 274 EDNRLQGD--ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
             N + G   +  +  D    ++ L +S N ++ G +  S  +   L    ++S   S  
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGN-KISGDVDVS--RCVNLEFLDVSSNNFSTG 215
Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
           I         C A  L+ L + G ++ G  +  +     L  L +S+NQ  G IP     
Sbjct: 216 IP----FLGDCSA--LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--P 267
Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
           + +L+ L L+ NK  G + +        L     + N     + P +     L  L L S
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 452 CHLGPRFPLWLQLQ-KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
            +     P+   L+ + L  LD+S    S ++P +  N       L++S N        F
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN-------F 380
Query: 511 DSPSMP-LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
             P +P L   P   L  ++ L NN  +G I   +    N S+ +  L LS N+ S  IP
Sbjct: 381 SGPILPNLCQNPKNTLQELY-LQNNGFTGKIPPTL---SNCSELVS-LHLSFNYLSGTIP 435
Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILEAL 629
               +  +LR L L  N   G +P  +                 G IP+   N + L  +
Sbjct: 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495
Query: 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI 689
            +  N L G IP WIG R   L IL L +N F G+ P +L    SL  LD+  N   GTI
Sbjct: 496 SLSNNRLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 690 PRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS--LVMKGFLVEYNSILNLVRSID 747
           P  +   S    A+       +     G  K        L  +G   E  + L+     +
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLF------------------------TGRIPD 783
           I+   + G       N   +  L++S+N+                         +G IPD
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 784 NIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFDASSF 843
            +G +R +  LD S+N+L G+IPQ+M                 G IP   Q ++F  + F
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734
Query: 844 AGND-LCGAPLSSCTEKNA 861
             N  LCG PL  C   NA
Sbjct: 735 LNNPGLCGYPLPRCDPSNA 753

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 157/400 (39%), Gaps = 107/400 (26%)
Query: 12  CIESEREALLKLKHDLRDPSHRLASWIGDNGDCCK--WGGVLCGNFTGHVLELNLQNPFS 69
           C   +++ALL++K DL +P+  L+SW+    DCC   W GVLC                 
Sbjct: 3   CNPQDKQALLQIKKDLGNPT-TLSSWL-PTTDCCNRTWLGVLCDT--------------- 45
Query: 70  PDDNEAYQRSMLVGKINPSXXXXXXXXXXXXSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
             D + Y+ + L                      D  G+ +PK                 
Sbjct: 46  --DTQTYRVNNL----------------------DLSGLNLPKPYP-------------- 67
Query: 130 FTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLV 189
               IP  L NL  L +L + G+   L       ++ L+ L +LYI+  N+S A    L 
Sbjct: 68  ----IPSSLANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL- 121
Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL-KHLD 248
            + + +L  L  S+  L      S ++  +L  +   GN+  G IP   G+ + L   + 
Sbjct: 122 -SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL-GLDNLTSIQKLLLSWNDELGGK 307
           +  N+    +    + LN L  + L  N L+GD S L G D  T  QK+ L+ N      
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT--QKIHLAKNS----- 232
Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367
                       +F +    LS++               L  L LR  +I+G L   L Q
Sbjct: 233 -----------LAFDLGKVGLSKN---------------LNGLDLRNNRIYGTLPQGLTQ 266
Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS---NNK 404
            K L+ L +S N + G IP    Q  NL+  D+S   NNK
Sbjct: 267 LKFLHSLNVSFNNLCGEIP----QGGNLQRFDVSAYANNK 302

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 116/272 (42%), Gaps = 56/272 (20%)
Query: 616 IPTSFKNFSILEALDVGE-NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLAS 674
           IP+S  N   L  L +G  N LVG IP  I  + ++L  L +      G  P  L ++ +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 675 LQILDVAYNSLLGTIPRCINNFSAMA--TADSSDQSSDILYAFSGDNKIVEDTSLV---M 729
           L  LD +YN+L GT+P  I++   +   T D +  S  I  ++   +K+    ++    +
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 730 KGFLVEYNSILNLVRSIDISMNNFSGEIPV-----------------------EVTNLQG 766
            G +    + LNL   +D+S N   G+  V                       +V   + 
Sbjct: 187 TGKIPPTFANLNLAF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 767 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXX 826
           L  L+L +N   G +P  +  ++ + SL+ S N L G+IPQ                   
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ------------------- 286
Query: 827 GEIPSSTQLQSFDASSFAGND-LCGAPLSSCT 857
                   LQ FD S++A N  LCG+PL +CT
Sbjct: 287 -----GGNLQRFDVSAYANNKCLCGSPLPACT 313

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 77/173 (44%), Gaps = 9/173 (5%)
Query: 104 DFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163
           D + +Q  +YL    N+RYL L   +   +    L  L+NL YL L+G   +L +     
Sbjct: 52  DIKSVQGIQYLP---NVRYLALGGNKLHDI--SALKELTNLTYLILTG--NQLQSLPNGV 104
Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
              L+ L+ L +    L    D   V + L +L  L L+  +L   P       ++LT L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTEL 162
Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
           DLS NQ Q         LT LK L LY NQ  S   G   +L  L+ + L DN
Sbjct: 163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
           L N++YL L G   +LH   IS L  L+ L +L ++   L    +   V + L +LKEL 
Sbjct: 62  LPNVRYLALGG--NKLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
           L   +L   P       ++LT L+L+ NQ Q         LT+L  LDL  NQ  S   G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
              KL  L+ L L  N+L+  +     D LTS+Q + L  N
Sbjct: 176 VFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
           L N++YL L G   +LH   IS L  L+ L +L ++   L    +   V + L +LKEL 
Sbjct: 62  LPNVRYLALGG--NKLH--DISALKELTNLTYLILTGNQLQSLPNG--VFDKLTNLKELV 115
Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
           L   +L   P       ++LT L L  NQ Q         LT+L  LDL +NQ  S   G
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
              KL  L+ LSL DN+L+  +     D LTS+  + L
Sbjct: 176 VFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWL 212

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
           V + L +L EL+L   +L   P     + + LT L L  N+ Q         LTSLK L 
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELR 163
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           LY+NQ      G   KL +L+ L L++N+L+  +     D+L  ++ L L  N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLKMLQLQEN 215

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 9/194 (4%)
Query: 223 LDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
           LDL  N+           LT L+ L L  N+  +   G   +L +LE L + DN+LQ   
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA-- 99
Query: 283 SSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSG 341
             +G+ D L ++ +L L  N +L    P  F  L KLT  S+   +L    S   G+F  
Sbjct: 100 LPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQ---SLPKGVFDK 155
Query: 342 CVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLS 401
             +  L+ L L   Q+         +   L  L L NNQ+      +   +  L+ L L 
Sbjct: 156 LTS--LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 402 NNKLNGTVSEIHFV 415
            N  + T + I ++
Sbjct: 214 ENPWDCTCNGIIYM 227

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 103/492 (20%), Positives = 186/492 (37%), Gaps = 86/492 (17%)
Query: 222 TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
            L LS N         +  L+ L+ L L  N+  S          DLE L +  NRLQ  
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ-DISEILGIFS 340
              +    + S++ L LS+ND     +   FG L KLT   +++ K  Q D+  +  +  
Sbjct: 115 ---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHL 171
Query: 341 GCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDL 400
            C+  +L S +++G +     + Q+     L+ +   N+     + +S+  + +L+   L
Sbjct: 172 SCILLDLVSYHIKGGET---ESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ---L 225
Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANA-------NSLIFKINPNW---VPPFQLTVLELR 450
           SN KLN         N  +L++FL+         N  +  I   W   V  FQ       
Sbjct: 226 SNIKLNDE-------NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF------ 272
Query: 451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
                     W +  + LN  +++ T   D+    +  +  +   +    NQ++      
Sbjct: 273 ---------FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF------ 317
Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGS---IFHLICQGENFSKNIEFLKLSTNHFSEG 567
                  + +   L     +++   LS S     H++C       +  FL  + N F++ 
Sbjct: 318 -------LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSSFTFLNFTQNVFTDS 368
Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGXXXXXXXXXXXXXXXXGVIPTSFKNFSILE 627
           +        RL+TL L  N       +++                        KN S LE
Sbjct: 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMT----------------------KNMSSLE 406
Query: 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
            LDV  N L              +++L L SN   G   +  C    +++LD+ +N+ + 
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS--VFRCLPPKVKVLDL-HNNRIM 463
Query: 688 TIPRCINNFSAM 699
           +IP+ + +  A+
Sbjct: 464 SIPKDVTHLQAL 475

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  S N     K     
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
            L L+ NQ+   G+    L  + NL  LDL+NN+++          LTKL      AN  
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
           I  I+P       LT LEL    L    P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  S N     K     
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLSFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
            L L+ NQ+   G+    L  + NL  LDL+NN+++          LTKL      AN  
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
           I  I+P       LT LEL    L    P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 119/270 (44%), Gaps = 32/270 (11%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  S N     K     
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQLNFSSNQVTDLK---PL 169
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 170 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 220
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
            L L+ NQ+   G+    L  + NL  LDL+NN+++          LTKL      AN  
Sbjct: 221 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 272
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
           I  I+P       LT LEL    L    P+
Sbjct: 273 ISNISP-LAGLTALTNLELNENQLEDISPI 301

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL 225
           GL+ L  L + +  L   S    V + L  L  L L+  +L   PL    + + L  L L
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL 285
            GNQ +         LT LK L L +NQ  S   G   KL +L+ LSL  N+LQ  +   
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173
Query: 286 GLDNLTSIQKLLLSWN 301
             D L  +Q + L  N
Sbjct: 174 AFDRLGKLQTITLFGN 189

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL 225
           GL+ L  L + +  L   S    V + L  L  L L+  +L   PL    + + L  L L
Sbjct: 57  GLTKLTWLNLDYNQLQTLSAG--VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL 285
            GNQ +         LT LK L L +NQ  S   G   KL +L+ LSL  N+LQ  +   
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173
Query: 286 GLDNLTSIQKLLLSWN 301
             D L  +Q + L  N
Sbjct: 174 AFDRLGKLQTITLFGN 189

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 67  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  S+ +++    P   
Sbjct: 123 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--SFGNQVTDLKP--L 173
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 174 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 224
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
            L L+ NQ+      +L  + NL  LDL+NN+++          LTKL      AN  I 
Sbjct: 225 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 278
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
            I+P       LT LEL    L    P+
Sbjct: 279 NISP-LAGLTALTNLELNENQLEDISPI 305

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 66  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  S+ +++    P   
Sbjct: 122 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--SFGNQVTDLKP--L 172
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 173 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 223
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
            L L+ NQ+      +L  + NL  LDL+NN+++          LTKL      AN  I 
Sbjct: 224 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 277
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
            I+P       LT LEL    L    P+
Sbjct: 278 NISP-LAGLTALTNLELNENQLEDISPI 304

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
           V + L SL +L L   +L   P       +SLT L+LS NQ Q         LT LK L 
Sbjct: 47  VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106
Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
           L +NQ  S   G   KL  L+ L L  N+L+  +     D LTS+Q + L
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL 155

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 122/270 (45%), Gaps = 33/270 (12%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  ++ +++    P   
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--NFGNQVTDLKP--L 168
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 169 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 219
Query: 373 FLGLSNNQMD--GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
            L L+ NQ+   G+    L  + NL  LDL+NN+++          LTKL      AN  
Sbjct: 220 ELSLNGNQLKDIGT----LASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ- 271
Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
           I  I+P       LT LEL    L    P+
Sbjct: 272 ISNISP-LAGLTALTNLELNENQLEDISPI 300

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 121/268 (45%), Gaps = 29/268 (10%)
Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L ++  S  +L     L   N + L  + ++ NQ     P  L NLT+L  L L++N
Sbjct: 62  LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
           Q     +  L  L +L  L L  N +  DIS+L    LTS+Q+L  ++ +++    P   
Sbjct: 118 QITD--IDPLKNLTNLNRLELSSNTI-SDISALS--GLTSLQQL--NFGNQVTDLKP--L 168
Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L  L    ++S K+S DIS +  +        LESL     QI   +T  LG    L+
Sbjct: 169 ANLTTLERLDISSNKVS-DISVLAKL------TNLESLIATNNQI-SDIT-PLGILTNLD 219
Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
            L L+ NQ+      +L  + NL  LDL+NN+++          LTKL      AN  I 
Sbjct: 220 ELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQ-IS 273
Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPL 460
            I+P       LT LEL    L    P+
Sbjct: 274 NISP-LAGLTALTNLELNENQLEDISPI 300

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 92/212 (43%), Gaps = 54/212 (25%)
Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
           +++  LNL + RF+ +        + LQ LDL+  + +      S + GL+LL+ L +S 
Sbjct: 251 MSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK---GLPSGMKGLNLLKKLVLSV 307
Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
            +  +                     C+      +S+ANF SLT L + GN         
Sbjct: 308 NHFDQ--------------------LCQ------ISAANFPSLTHLYIRGN--------- 332
Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKL 296
                 +K L L         +G L KL +L+ L L  N ++  D  SL L NL+ +Q L
Sbjct: 333 ------VKKLHLG--------VGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTL 378
Query: 297 LLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
            LS N+ LG +   +F +  +L    +A T+L
Sbjct: 379 NLSHNEPLGLQ-SQAFKECPQLELLDLAFTRL 409

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 144/323 (44%), Gaps = 53/323 (16%)
Query: 101 SGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAET 160
           +G     IQ  +YL    NL YLNL+  + T + P     LSNL  + L+ +Y   +  T
Sbjct: 52  AGEKVASIQGIEYLT---NLEYLNLNGNQITDISP-----LSNL--VKLTNLYIGTNKIT 101
Query: 161 -ISWLSGLSLLEHLYISFVNLSKAS--DSLLVINSL-----HSLKELK----------LS 202
            IS L  L+ L  LY++  N+S  S   +L    SL     H+L +L           L+
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLT 161
Query: 203 FCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV-LGW 261
             E     +   AN + L +L L+ NQ +   P  L +LTSL +   Y NQ      +  
Sbjct: 162 VTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVAN 219
Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP--TSFGKLCKLT 319
            ++LN L++    +N++  D+S L   NL+      L+W +    +I    +   L KL 
Sbjct: 220 XTRLNSLKI---GNNKIT-DLSPLA--NLSQ-----LTWLEIGTNQISDINAVKDLTKLK 268
Query: 320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNN 379
             ++ S ++S DIS +L   S     +L SL+L   Q+       +G    L  L LS N
Sbjct: 269 XLNVGSNQIS-DIS-VLNNLS-----QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQN 321
Query: 380 QMDGSIPLSLGQMANLESLDLSN 402
            +    P  L  ++  +S D +N
Sbjct: 322 HITDIRP--LASLSKXDSADFAN 342

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	931
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-70
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-68
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-36
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-59
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-43
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-35
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-29
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-71
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-36
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-29
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-63
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-54
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-52
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-54
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-53
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-47
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-31
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-30
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-42
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-41
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-40
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-37
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-37
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-36
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-33
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-31
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-30
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-29
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-26
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-19
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-15
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-19
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-25
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-23
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-23
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-17
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-21
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	9e-14
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	9e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-10
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-09
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	7e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	8e-07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	9e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	8e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  553 bits (1427), Expect = 0.0
 Identities = 220/857 (25%), Positives = 347/857 (40%), Gaps = 125/857 (14%)

Query: 10  TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFS 69
           +  +  E   L+  K  L D +  L  W  +  + C + GV C +    V  ++L +   
Sbjct: 7   SQSLYREIHQLISFKDVLPDKN-LLPDWSSNK-NPCTFDGVTCRD--DKVTSIDLSS--- 59

Query: 70  PDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
                    ++    ++ SLL L  L  L LS +   G  +        +L  L+LS+  
Sbjct: 60  ------KPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSG-FKCSASLTSLDLSRNS 111

Query: 130 FTGMIP--HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKA-SDS 186
            +G +     LG+ S L++L++S    +   + +S    L+ LE L +S  ++S A    
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK-VSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 187 LLVINSLHSLKELKLSFCELH-HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK 245
            ++ +    LK L +S  ++     +   +   +L  LD+S N F   IP  LG+ ++L+
Sbjct: 171 WVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQ 226

Query: 246 HLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG 305
           HLD+  N+ +      +S   +L++L++  N+  G I       L S+Q L L+ N +  
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAEN-KFT 282

Query: 306 GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL 365
           G+IP      C                              L  L L G   +G +    
Sbjct: 283 GEIPDFLSGACD----------------------------TLTGLDLSGNHFYGAVPPFF 314

Query: 366 GQFKRLNFLGLSNNQMDGSIPL-SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFL 424
           G    L  L LS+N   G +P+ +L +M  L+ LDLS N+ +G + E    NL+      
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSA----- 368

Query: 425 ANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFP--LWLQLQKKLNDLDISSTRISDKI 482
                              L  L+L S +        L    +  L +L + +   + KI
Sbjct: 369 ------------------SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 483 PRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFH 542
           P    N   +   L++S N + G +P        L     L       L  N L G I  
Sbjct: 411 PPTLSN-CSELVSLHLSFNYLSGTIPSS------LGSLSKL---RDLKLWLNMLEGEIPQ 460

Query: 543 LICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSL 602
            +       K +E L L  N  +  IP    N   L  ++L NN  TG +P  IG L +L
Sbjct: 461 ELMYV----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516

Query: 603 RSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFH 662
             L L NN  SG IP    +   L  LD+  N   G+IP  + +         + +N   
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK-----QSGKIAANFIA 571

Query: 663 GDFPIQLCRLASLQILDVAYN--SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNK 720
           G   + +      +    A N     G     +N  S     + +               
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT--------------- 616

Query: 721 IVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 780
                S V  G           +  +D+S N  SG IP E+ ++  L  LNL HN  +G 
Sbjct: 617 -----SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671

Query: 781 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDA 840
           IPD +G +R +  LD S+N+L G+IPQ+MS L+ L  ++LSNNNL+G IP   Q ++F  
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731

Query: 841 SSFAGND-LCGAPLSSC 856
           + F  N  LCG PL  C
Sbjct: 732 AKFLNNPGLCGYPLPRC 748

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  278 bits (712), Expect = 6e-82
 Identities = 140/729 (19%), Positives = 236/729 (32%), Gaps = 106/729 (14%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYIS 176
           V+    + S  + T  +P  L   +N+  L+L+      L A      +  S L  L + 
Sbjct: 4   VSHEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAAN---FTRYSQLTSLDVG 57

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
           F  +SK    L     L  LK L L   EL      + A  ++LT L L  N  Q    +
Sbjct: 58  FNTISKLEPELC--QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 237 RLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISS-LGLDNLTSIQK 295
                 +L  LDL  N  +S  LG   +L +L+ L L +N++Q   S  L +   +S++K
Sbjct: 116 PFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 296 LLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC 355
           L LS N ++    P  F  + +L    + + +L   ++E L +        + +L L   
Sbjct: 176 LELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT--SIRNLSLSNS 232

Query: 356 QI--FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIH 413
           Q+    + T    ++  L  L LS N ++     S   +  LE   L  N +   +    
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH-LFSHS 291

Query: 414 FVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDI 473
              L  +       +     I+        L  ++              Q  K L  L++
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLA-----SLPKID----------DFSFQWLKCLEHLNM 336

Query: 474 SSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSN 533
               I       F                                   +L       LSN
Sbjct: 337 EDNDIPGIKSNMFTG-------------------------------LINL---KYLSLSN 362

Query: 534 NALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP 593
           +  S                +  L L+ N  S+   D +     L  L+LG N     L 
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 594 -MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL--VGSIPTWIGERFSR 650
                 L ++  + L  N+   +   SF     L+ L +    L  V S P+        
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRN 481

Query: 651 LMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710
           L IL L +N         L  L  L+ILD+ +N+L              A          
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL--------------ARLWKHANPGG 527

Query: 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSL 770
            +Y   G                      L+ +  +++  N F         +L  L+ +
Sbjct: 528 PIYFLKG----------------------LSHLHILNLESNGFDEIPVEVFKDLFELKII 565

Query: 771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS-NLSFLNYLNLSNNNLNGEI 829
           +L  N              S++SL+   N ++    +        L  L++  N  +   
Sbjct: 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625

Query: 830 PSSTQLQSF 838
            S     ++
Sbjct: 626 ESIAWFVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  244 bits (625), Expect = 8e-70
 Identities = 118/605 (19%), Positives = 209/605 (34%), Gaps = 54/605 (8%)

Query: 77  QRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPH 136
             + +         +L  L  L+L  N+   +   K  A   NL  L+L       +  +
Sbjct: 57  GFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNN 115

Query: 137 QLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
                 NL  LDLS     L +  +     L  L+ L +S   +       L I +  SL
Sbjct: 116 PFVKQKNLITLDLSHN--GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLG---NLTSLKHLDLYSNQ 253
           K+L+LS  ++  F          L  L L+  Q    +  +L      TS+++L L ++Q
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233

Query: 254 FNSAVLGWLSKLND--LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTS 311
            ++        L    L +L L  N L   + +     L  ++   L +N  +      S
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYN-NIQHLFSHS 291

Query: 312 FGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRL 371
              L  +   ++  +   Q IS                       +           K L
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSIS--------------------LASLPKIDDFSFQWLKCL 331

Query: 372 NFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN-GTVSEIHFVNL--TKLVSFLANAN 428
             L + +N + G        + NL+ L LSN+  +  T++   FV+L  + L       N
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 429 SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW-LQLQKKLNDLDISSTRISDKIPRAFW 487
            +    +  +     L VL+L    +G        +  + + ++ +S  +       +F 
Sbjct: 392 KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF- 450

Query: 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQG 547
             +     L +    +       DS   P     +L    I DLSNN ++     ++   
Sbjct: 451 ALVPSLQRLMLRRVALKN----VDSSPSPFQPLRNLT---ILDLSNNNIANINDDMLEG- 502

Query: 548 ENFSKNIEFLKLSTNHFSE--------GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTL 599
               + +E L L  N+ +         G          L  LNL +N F          L
Sbjct: 503 ---LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 600 TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
             L+ ++L  N L+ +  + F N   L++L++ +N +        G  F  L  L +R N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 660 KFHGD 664
            F   
Sbjct: 620 PFDCT 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  240 bits (614), Expect = 3e-68
 Identities = 121/626 (19%), Positives = 200/626 (31%), Gaps = 60/626 (9%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
              +      L  LD+  N    +  P+    L  L+ LNL     + +        +NL
Sbjct: 41  PAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99

Query: 145 QYLDLSGVYFE-LHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSF 203
             L L     + +             L  L +S   LS           L +L+EL LS 
Sbjct: 100 TELHLMSNSIQKIKNNPFVKQKN---LITLDLSHNGLSSTKLGTQ--VQLENLQELLLSN 154

Query: 204 CELHHFP--LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV--- 258
            ++       L     SSL  L+LS NQ +   P     +  L  L L + Q   ++   
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 259 LGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCK 317
           L        +  LSL +++L     ++      T++  L LS+N  L      SF  L +
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQ 273

Query: 318 LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS 377
           L  F +    +    S       G   + +  L L+                      +S
Sbjct: 274 LEYFFLEYNNIQHLFS---HSLHGL--FNVRYLNLKRS---------------FTKQSIS 313

Query: 378 NNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPN 437
              +      S   +  LE L++ +N + G  S + F  L  L     + +    +   N
Sbjct: 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTN 372

Query: 438 WV----PPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQY 493
                     L +L L    +             L  LD+    I  ++    W  +   
Sbjct: 373 ETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 494 YYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKN 553
           + + +S N+                + PSL       L   AL   +       +    N
Sbjct: 433 FEIYLSYNKYLQ------LTRNSFALVPSL---QRLMLRRVALKN-VDSSPSPFQPLR-N 481

Query: 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT--------GSLPMSIGTLTSLRSL 605
           +  L LS N+ +    D      +L  L+L +NN          G     +  L+ L  L
Sbjct: 482 LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHIL 541

Query: 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF 665
           NL +N    +    FK+   L+ +D+G N L     +        L  L L+ N      
Sbjct: 542 NLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN-QVSLKSLNLQKNLITSVE 600

Query: 666 PIQLCR-LASLQILDVAYNSLLGTIP 690
                    +L  LD+ +N    T  
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  145 bits (369), Expect = 2e-36
 Identities = 61/320 (19%), Positives = 115/320 (35%), Gaps = 27/320 (8%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
           +L++N L             +S  +  L +  N  S+  P+     P L+ LNL +N  +
Sbjct: 31  NLTHNQLRRLPAANF---TRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS 649
                +    T+L  L+L +N +  +    F     L  LD+  N L  +       +  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLE 145

Query: 650 RLMILILRSNKFHG--DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ 707
            L  L+L +NK        + +   +SL+ L+++ N +    P C +    +     +  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN-- 203

Query: 708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQG- 766
                     + ++      + +   +E       +R++ +S +  S         L+  
Sbjct: 204 ----------NVQL---GPSLTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 767 -LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
            L  L+LS+N       D+   +  +E      N +      S+  L  + YLNL  +  
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 826 NGEIPSSTQLQSFDASSFAG 845
              I S   L   D  SF  
Sbjct: 309 KQSI-SLASLPKIDDFSFQW 327

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  252 bits (645), Expect = 3e-73
 Identities = 126/610 (20%), Positives = 218/610 (35%), Gaps = 65/610 (10%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
              +LDLS N  + +       S   L+ L+LS+     +      +LS+L  L L+G  
Sbjct: 29  STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS 213
             + +  +   SGLS L+ L     NL+   +  +    L +LKEL ++   +  F L  
Sbjct: 87  -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPE 143

Query: 214 S-ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK----HLDLYSNQFNSAVLGWLSKLNDL 268
             +N ++L  LDLS N+ Q    + L  L  +      LDL  N  N    G   ++  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND-----ELGGKIPTSFGKLCKLTSFSM 323
             L+L +N    ++    +  L  ++   L   +      L     ++   LC LT    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
               L   + +I+ +F+      + S  L    I                L L N +   
Sbjct: 263 RLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQ 318

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
              L L    +L+ L  ++NK     SE+   +L  L     N  S     + +      
Sbjct: 319 FPTLKLK---SLKRLTFTSNKGGNAFSEVDLPSLEFL-DLSRNGLSFKGCCSQSDFGTTS 374

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           L  L+L    +      +L L++ L  LD   + +      + + S+             
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSL------------- 420

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
                             +L+     D+S+     +   +         ++E LK++ N 
Sbjct: 421 -----------------RNLI---YLDISHTHTRVAFNGIFNG----LSSLEVLKMAGNS 456

Query: 564 FSEGI-PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
           F E   PD +     L  L+L         P +  +L+SL+ LN+ +N    +    +K 
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 516

Query: 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQ--LCRLASLQILDV 680
            + L+ LD   N ++ S    +    S L  L L  N F      Q  L  +   + L V
Sbjct: 517 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 681 AYNSLLGTIP 690
               +    P
Sbjct: 577 EVERMECATP 586

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  234 bits (598), Expect = 9e-67
 Identities = 122/641 (19%), Positives = 198/641 (30%), Gaps = 110/641 (17%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           S K L LSF  L H    S  +F  L  LDLS  + Q        +L+ L  L L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
            S  LG  S L+ L+ L   +  L    +   + +L ++++L ++ N     K+P  F  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
           L  L    ++S K+                                L         L+  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD----------------------LRVLHQMPLLNLSLD-- 183

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKI 434
            LS N M+   P +  ++  L  L L NN  +  V +     L  L            + 
Sbjct: 184 -LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 435 NPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY 494
           N        L  L    C+L             + +  ++            +N +    
Sbjct: 242 NLEKFDKSALEGL----CNL------------TIEEFRLAYLDYYLDDIIDLFNCLTNVS 285

Query: 495 YLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNI 554
             ++    I        +                 +L N          +          
Sbjct: 286 SFSLVSVTIERVKDFSYNFGW-----------QHLELVNCKFGQFPTLKLKS-------- 326

Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN--NFTGSLPMSIGTLTSLRSLNLRNNRL 612
              +L+      G     ++ P L  L+L  N  +F G    S    TSL+ L+L  N +
Sbjct: 327 -LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL 672
              + ++F     LE LD   + L       +      L+ L +        F      L
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 673 ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGF 732
           +SL++L +A NS        I                     F+                
Sbjct: 445 SSLEVLKMAGNSFQENFLPDI---------------------FTE--------------- 468

Query: 733 LVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792
                  L  +  +D+S        P    +L  LQ LN+SHN F          + S++
Sbjct: 469 -------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521

Query: 793 SLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPSS 832
            LD+S N +     Q + +  S L +LNL+ N+        
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 562

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  211 bits (540), Expect = 6e-59
 Identities = 110/590 (18%), Positives = 187/590 (31%), Gaps = 58/590 (9%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYIS 176
                LN  +      IP  L    + + LDLS      L + +         L+ L +S
Sbjct: 12  YQCMELNFYK------IPDNL--PFSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLS 60

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
              +    D      SL  L  L L+   +    L + +  SSL  L             
Sbjct: 61  RCEIQTIEDGAY--QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 237 RLGNLTSLKHLDLYSNQFNSAVLG-WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ- 294
            +G+L +LK L++  N   S  L  + S L +LE L L  N++Q    +  L  L  +  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPL 177

Query: 295 ---KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
               L LS N  +    P +F K  +L   ++ +   S ++ +      G    E+  L 
Sbjct: 178 LNLSLDLSLNP-MNFIQPGAF-KEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLV 233

Query: 352 LRGCQIFGHLT----NQLGQFKRLNFLGLSNNQMDGS---IPLSLGQMANLESLDLSNNK 404
           L   +  G+L     + L     L         +D     I      + N+ S  L +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 405 LNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQL 464
           +       +      L                +           L               
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSL--------KRLTFTSNKGGNAFSEVD 345

Query: 465 QKKLNDLDISSTRISDK--IPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPS 522
              L  LD+S   +S K    ++ + +     YL++S N +      F            
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVITMSSNFLGL-------EQ 397

Query: 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLN 582
           L      D  ++ L       +       +N+ +L +S  H        +     L  L 
Sbjct: 398 L---EHLDFQHSNLKQMSEFSVFLS---LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 583 LGNNNFTGSL-PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641
           +  N+F  +  P     L +L  L+L   +L  + PT+F + S L+ L++  N       
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 511

Query: 642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLA-SLQILDVAYNSLLGTIP 690
                  + L +L    N        +L     SL  L++  N    T  
Sbjct: 512 FPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  166 bits (423), Expect = 2e-43
 Identities = 96/564 (17%), Positives = 163/564 (28%), Gaps = 96/564 (17%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGN 140
           L    N  +  LK L  L+++ N  Q  ++P+Y ++L NL +L+LS  +   +    L  
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 141 LSNLQY----LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
           L  +      LDLS                   L  L +     S        I  L  L
Sbjct: 172 LHQMPLLNLSLDLSLNPMN---FIQPGAFKEIRLHKLTLRNNFDSLNVMKTC-IQGLAGL 227

Query: 197 KELKLSFCELHHFPLL---SSANFSSLTTLDLSGNQ------FQGQIPSRLGNLTSLKHL 247
           +  +L   E  +   L     +    L  L +   +      +   I      LT++   
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK 307
            L S       +   S     + L L + +      +L L +L  +              
Sbjct: 288 SLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGG------ 338

Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367
              S   L  L    ++   LS           G  +  L+ L L    +   +++    
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSF-KGCCSQSDFGTTS--LKYLDLSFNGVIT-MSSNFLG 394

Query: 368 FKRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
            ++L  L   ++ +      S    + NL  LD+S+       + I F  L+ L      
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMA 453

Query: 427 ANSLIFKINPNWVPPF-QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA 485
            NS      P+       LT L+L  C L    P        L  L++S           
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLIC 545
           +                                   SL    + D S N +  S      
Sbjct: 514 YKCL-------------------------------NSL---QVLDYSLNHIMTSKKQ--- 536

Query: 546 QGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMS--IGTLTSLR 603
                    E     ++               L  LNL  N+F  +      +  +   R
Sbjct: 537 ---------ELQHFPSS---------------LAFLNLTQNDFACTCEHQSFLQWIKDQR 572

Query: 604 SLNLRNNRLSGVIPTSFKNFSILE 627
            L +   R+    P+  +   +L 
Sbjct: 573 QLLVEVERMECATPSDKQGMPVLS 596

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  140 bits (356), Expect = 6e-35
 Identities = 66/340 (19%), Positives = 102/340 (30%), Gaps = 43/340 (12%)

Query: 79  SMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL 138
              +  I      L ++    L     + ++     +     ++L L   +F      +L
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVK---DFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 139 GNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKE 198
            +L  L +    G               L  LE L +S   LS             SLK 
Sbjct: 325 KSLKRLTFTSNKGG-------NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKY 377

Query: 199 LKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIP-SRLGNLTSLKHLDLYSNQFNSA 257
           L LSF  +      +      L  LD   +  +     S   +L +L +LD+       A
Sbjct: 378 LDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

Query: 258 VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCK 317
             G  + L+ LEVL +  N  Q +        L ++  L LS    L    PT+F  L  
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSS 495

Query: 318 LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS 377
                                        L+ L +     F   T        L  L  S
Sbjct: 496 -----------------------------LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 378 NNQMDGSIPLSLGQMA-NLESLDLSNNKLNGTVSEIHFVN 416
            N +  S    L     +L  L+L+ N    T     F+ 
Sbjct: 527 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  123 bits (311), Expect = 2e-29
 Identities = 52/361 (14%), Positives = 95/361 (26%), Gaps = 68/361 (18%)

Query: 514 SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWM 573
            +P  +  S       DLS N L     +           ++ L LS           + 
Sbjct: 21  KIPDNLPFST---KNLDLSFNPLRHLGSYSFFS----FPELQVLDLSRCEIQTIEDGAYQ 73

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
           +   L TL L  N        +   L+SL+ L      L+ +      +   L+ L+V  
Sbjct: 74  SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQI----LDVAYNSLLGTI 689
           N +            + L  L L SNK    +   L  L  + +    LD++ N +    
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193

Query: 690 PRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDIS 749
           P                                                    +  + + 
Sbjct: 194 PGAFKEIR---------------------------------------------LHKLTLR 208

Query: 750 MNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRI---PDNIGVMRSIESLDFSANQLS--- 802
            N  S  +       L GL+   L    F         +   +  + +L     +L+   
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 803 ---GQIPQSMSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFDASSFAGNDLCGAPLSSCT 857
                I    + L+ ++  +L +  +      S     Q  +  +          L S  
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 858 E 858
            
Sbjct: 329 R 329

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  118 bits (298), Expect = 9e-28
 Identities = 57/227 (25%), Positives = 89/227 (39%), Gaps = 6/227 (2%)

Query: 77  QRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQ-IPKYLASLVNLRYLNLSQARFTGMIP 135
             +   G    S ++L  L  LDLS N         +      +L+YL+LS       + 
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MS 389

Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS 195
                L  L++LD      +      S    L  L +L IS  +   A + +   N L S
Sbjct: 390 SNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSS 446

Query: 196 LKELKLSFCELH-HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           L+ LK++      +F         +LT LDLS  Q +   P+   +L+SL+ L++  N F
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
            S        LN L+VL    N +            +S+  L L+ N
Sbjct: 507 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 6e-14
 Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 10/173 (5%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGN 140
                N     L  L  L ++GN FQ   +P     L NL +L+LSQ +   + P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK 200
           LS+LQ L++S       +        L+ L+ L  S  ++  +    L  +   SL  L 
Sbjct: 493 LSSLQVLNMSHN--NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAFLN 549

Query: 201 LSF----CELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           L+     C   H   L          L +   + +   PS    +  +  L++
Sbjct: 550 LTQNDFACTCEHQSFLQWIK--DQRQLLVEVERMECATPSDKQGM-PVLSLNI 599

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  236 bits (604), Expect = 8e-71
 Identities = 91/333 (27%), Positives = 136/333 (40%), Gaps = 56/333 (16%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS--EGIPDCWMNWPRLRTLNLGN-N 586
           D  N    G +    C  +  +  +  L LS  +      IP    N P L  L +G  N
Sbjct: 32  DCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN 87

Query: 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGE 646
           N  G +P +I  LT L  L + +  +SG IP        L  LD   N L G++P  I  
Sbjct: 88  NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS- 146

Query: 647 RFSRLMILILRSNKFHGDFPIQLCRLASL-QILDVAYNSLLGTIPRCINNFSAMATADSS 705
               L+ +    N+  G  P      + L   + ++ N L G IP    N          
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN---------- 196

Query: 706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQ 765
                                             LNL   +D+S N   G+  V   + +
Sbjct: 197 ----------------------------------LNLAF-VDLSRNMLEGDASVLFGSDK 221

Query: 766 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
             Q ++L+ N     +   +G+ +++  LD   N++ G +PQ ++ L FL+ LN+S NNL
Sbjct: 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 826 NGEIPSSTQLQSFDASSFAGND-LCGAPLSSCT 857
            GEIP    LQ FD S++A N  LCG+PL +CT
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  170 bits (433), Expect = 3e-47
 Identities = 90/400 (22%), Positives = 135/400 (33%), Gaps = 107/400 (26%)

Query: 12  CIESEREALLKLKHDLRDPSHRLASWIGDNGDC-CKWGGVLCGNFT--GHVLELNLQ-NP 67
           C   +++ALL++K DL +P+  L+SW+     C   W GVLC   T    V  L+L    
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 68  FSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSG-NDFQGIQIPKYLASLVNLRYLNLS 126
                            I  SL  L +L  L + G N+  G  IP  +A L  L YL ++
Sbjct: 62  LP-----------KPYPIPSSLANLPYLNFLYIGGINNLVG-PIPPAIAKLTQLHYLYIT 109

Query: 127 QARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETI-SWLSGLSLLEHLYISFVNLSKASD 185
               +G IP  L  +  L  LD S         T+   +S L  L  +            
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALS---GTLPPSISSLPNLVGITFDG-------- 158

Query: 186 SLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTT-LDLSGNQFQGQIPSRLGNLTSL 244
                N +                P  S  +FS L T + +S N+  G+IP    NL +L
Sbjct: 159 -----NRISG------------AIPD-SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NL 199

Query: 245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDEL 304
             +DL  N              + + + L  N L  D+  +G     ++  L L  N  +
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNN-RI 256

Query: 305 GGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQ 364
            G +P    +L                                                 
Sbjct: 257 YGTLPQGLTQL------------------------------------------------- 267

Query: 365 LGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNK 404
               K L+ L +S N + G IP   G +   +    +NNK
Sbjct: 268 ----KFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 3e-36
 Identities = 72/355 (20%), Positives = 123/355 (34%), Gaps = 80/355 (22%)

Query: 297 LLSWNDELG-------GKIPTSFGKLCKLTSFSMASTKLS--QDISEILGIFSGCVAYEL 347
           L SW            G +  +  +  ++ +  ++   L     I   L          L
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY-----L 78

Query: 348 ESLYLRG-CQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
             LY+ G   + G +   + +  +L++L +++  + G+IP  L Q+  L +LD S N L+
Sbjct: 79  NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Query: 407 GTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK 466
           GT+                                                 P  +    
Sbjct: 139 GTL-------------------------------------------------PPSISSLP 149

Query: 467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG 526
            L  +     RIS  IP ++ +    +  + +S N++ G +P   +         +L L 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA---------NLNLA 200

Query: 527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN 586
            + DLS N L G    L        KN + + L+ N  +  +         L  L+L NN
Sbjct: 201 FV-DLSRNMLEGDASVLFGS----DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254

Query: 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641
              G+LP  +  L  L SLN+  N L G IP    N    +      N+ +   P
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  136 bits (344), Expect = 2e-35
 Identities = 62/328 (18%), Positives = 113/328 (34%), Gaps = 71/328 (21%)

Query: 347 LESLYLRGCQIFG--HLTNQLGQFKRLNFLGLSN-NQMDGSIPLSLGQMANLESLDLSNN 403
           + +L L G  +     + + L     LNFL +   N + G IP ++ ++  L  L +++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 404 KLNGTV-SEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL 462
            ++G +   +    +  L                          L+     L    P  +
Sbjct: 112 NVSGAIPDFLS--QIKTL------------------------VTLDFSYNALSGTLPPSI 145

Query: 463 QLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPS 522
                L  +     RIS  IP ++ +    +  + +S N++ G +P              
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP------------- 192

Query: 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLN 582
                           +  +L         N+ F+ LS N         + +    + ++
Sbjct: 193 ----------------TFANL---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227

Query: 583 LGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPT 642
           L  N+    L   +G   +L  L+LRNNR+ G +P        L +L+V  N L G IP 
Sbjct: 228 LAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 643 WIGERFSRLMILILRSNKFHGDFPIQLC 670
             G    R  +    +NK     P+  C
Sbjct: 287 --GGNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (335), Expect = 3e-34
 Identities = 70/318 (22%), Positives = 114/318 (35%), Gaps = 68/318 (21%)

Query: 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFV-NLTKLVS-FLANANSLIFK 433
             N    G +  +  Q   + +LDLS   L         + NL  L   ++   N+L+  
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 434 INPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQY 493
           I      P  +  L                   +L+ L I+ T +S  IP          
Sbjct: 93  I------PPAIAKL------------------TQLHYLYITHTNVSGAIPDFLSQI---- 124

Query: 494 YYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKN 553
                                       +L      D S NALSG++   I        N
Sbjct: 125 ---------------------------KTL---VTLDFSYNALSGTLPPSISS----LPN 150

Query: 554 IEFLKLSTNHFSEGIPDCWMNWPRLRT-LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
           +  +    N  S  IPD + ++ +L T + +  N  TG +P +   L +L  ++L  N L
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNML 209

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL 672
            G     F +    + + + +N L   +          L  L LR+N+ +G  P  L +L
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQL 267

Query: 673 ASLQILDVAYNSLLGTIP 690
             L  L+V++N+L G IP
Sbjct: 268 KFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  131 bits (333), Expect = 6e-34
 Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 66/314 (21%)

Query: 466 KKLNDLDISSTRIS--DKIPRAFWNSIF-QYYYLNVSGNQIYGGVPKFDSPSMPLIITPS 522
            ++N+LD+S   +     IP +  N  +  + Y+    N + G +P       P I   +
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIP-------PAIAKLT 101

Query: 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLN 582
            L      +++  +SG+I   + Q     K +  L  S N  S  +P    + P L  + 
Sbjct: 102 QL--HYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155

Query: 583 LGNNNFTGSLPMSIGTLTSL-RSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641
              N  +G++P S G+ + L  S+ +  NRL+G IP +F N + L  +D+  N L G   
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS 214

Query: 642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMAT 701
              G        + L  N    D   ++    +L  LD+  N + GT+P+ +     +  
Sbjct: 215 VLFG-SDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL-- 270

Query: 702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV 761
                                                      S+++S NN  GEIP   
Sbjct: 271 ------------------------------------------HSLNVSFNNLCGEIPQG- 287

Query: 762 TNLQGLQSLNLSHN 775
            NLQ       ++N
Sbjct: 288 GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  119 bits (301), Expect = 1e-29
 Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 53/225 (23%)

Query: 616 IPTSFKNFSIL----EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI--QL 669
           I     N + L       D      +G +      +  R+  L L        +PI   L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDT-QTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 670 CRLASLQILDVA-YNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV 728
             L  L  L +   N+L+G IP  I   +                               
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------- 101

Query: 729 MKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 788
                        L   + I+  N SG IP  ++ ++ L +L+ S+N  +G +P +I  +
Sbjct: 102 ------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 789 RSIESLDFSANQLSGQIPQSMSNLSFL-NYLNLSNNNLNGEIPSS 832
            ++  + F  N++SG IP S  + S L   + +S N L G+IP +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 86.0 bits (214), Expect = 2e-18
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 7/105 (6%)

Query: 745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR--IPDNIGVMRSIESLDFS-ANQL 801
           + D     + G +    T    + +L+LS         IP ++  +  +  L     N L
Sbjct: 30  TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89

Query: 802 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQLQSFDASS 842
            G IP +++ L+ L+YL +++ N++G IP        L + D S 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY 134

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 756 EIPVEVTNLQGLQS----LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ--IPQSM 809
           +I  ++ N   L S     +  +  + G + D       + +LD S   L     IP S+
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 810 SNLSFLNYLNLSN-NNLNGEIPSS----TQLQSFDASSFAGNDLCG 850
           +NL +LN+L +   NNL G IP +    TQL     +     ++ G
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---HTNVSG 115

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  225 bits (575), Expect = 2e-63
 Identities = 104/629 (16%), Positives = 199/629 (31%), Gaps = 90/629 (14%)

Query: 104 DFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163
           D  G Q    L S   +  L+L     +G +P  +G L+ L+ L L     +++      
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 164 --LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLT 221
             +S     E      ++  K             L +  ++          SS      T
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT 186

Query: 222 TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
            +    N     +   +  LT L+   + ++ F +  +    +  + E            
Sbjct: 187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT----- 240

Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS---QDISEILGI 338
              L  DNL  +  + +     L  K+PT    L ++   ++A  +     Q   +   +
Sbjct: 241 -EDLKWDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 339 FSGCVAYELESLYLRGCQIF-GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
               V  +++ +Y+    +    +   L + K+L  L    NQ++G +P + G    L S
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357

Query: 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457
           L+L+ N++    +        ++ +     N L  K  PN      ++V+          
Sbjct: 358 LNLAYNQITEIPANF-CGFTEQVENLSFAHNKL--KYIPNIFDAKSVSVMS--------- 405

Query: 458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPL 517
                                                 ++ S N+I G V   +   +  
Sbjct: 406 -------------------------------------AIDFSYNEI-GSVDGKNFDPLDP 427

Query: 518 IITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE-------GIPD 570
                + + S  +LSNN +S     L          +  + L  N  +E          +
Sbjct: 428 TPFKGINV-SSINLSNNQISKFPKELFST----GSPLSSINLMGNMLTEIPKNSLKDENE 482

Query: 571 CWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
            + N   L +++L  N  T         TL  L  ++L  N  S   PT   N S L+  
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541

Query: 630 DVGE------NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683
            +        N  +   P  I      L  L + SN       +      ++ +LD+  N
Sbjct: 542 GIRNQRDAQGNRTLREWPEGIT-LCPSLTQLQIGSNDIRK---VNEKITPNISVLDIKDN 597

Query: 684 SLLGTIPRCINNFSAMATAD-SSDQSSDI 711
             +      +  +          D++ DI
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  224 bits (572), Expect = 5e-63
 Identities = 92/668 (13%), Positives = 183/668 (27%), Gaps = 112/668 (16%)

Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
              +              P +S  +   +T L L G    G++P  +G LT L+ L L S
Sbjct: 55  QPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGS 114

Query: 252 NQFNSAVLGW----LSKLNDLEVLSLEDNRLQGDI-SSLGLDNLTSIQKLLLSWNDELGG 306
           +        +    +S     E         Q         ++ + + K  ++ + +   
Sbjct: 115 HGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 307 KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLG 366
            I  S     K T     S  ++     ++ +        L   Y+           +  
Sbjct: 175 -IKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK------LRQFYMGNSPFVAENICEAW 227

Query: 367 QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
           + +   +          +  L    + +L  +++ N      +       L ++      
Sbjct: 228 ENENSEYAQQY-----KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVA 281

Query: 427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISD-KIPRA 485
            N                  +         +      + +K+  + I    +    +  +
Sbjct: 282 CNRG----------------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS 325

Query: 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLIC 545
               + +   L    NQ+ G +P F S          L   +  +L+ N ++    +   
Sbjct: 326 LQK-MKKLGMLECLYNQLEGKLPAFGS-------EIKL---ASLNLAYNQITEIPANFC- 373

Query: 546 QGENFSKNIEFLKLSTNHFSEGIPD--CWMNWPRLRTLNLGNNNFTG-------SLPMSI 596
               F++ +E L  + N     IP+     +   +  ++   N            L  + 
Sbjct: 374 ---GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 597 GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG-------SIPTWIGERFS 649
               ++ S+NL NN++S      F   S L ++++  N L                    
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFK-NTY 488

Query: 650 RLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708
            L  + LR NK        +   L  L  +D++YNS     P    N S +         
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTL--------- 538

Query: 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ 768
                                            +    D   N    E P  +T    L 
Sbjct: 539 -----------------------------KGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 769 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828
            L +  N     + + I    +I  LD   N         +          L  +    +
Sbjct: 570 QLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-D 625

Query: 829 IPSSTQLQ 836
           I     L 
Sbjct: 626 IRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  199 bits (508), Expect = 2e-54
 Identities = 87/641 (13%), Positives = 207/641 (32%), Gaps = 125/641 (19%)

Query: 41  NGDCCKWG---GVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVH 97
           N +   WG   GV   +  G V  L+L+                 G++  ++ +L  L  
Sbjct: 63  NKELDMWGAQPGVSLNS-NGRVTGLSLEG------------FGASGRVPDAIGQLTELEV 109

Query: 98  LDLSGNDFQGIQ---IPKYLASLVNLRYLNLSQARFTGMIPHQLG--NLSNLQYLDLSGV 152
           L L  +  +  +    PK +++ ++       +  +           + S+L    ++  
Sbjct: 110 LALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

Query: 153 YFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL 212
             +   +             +     N++  S +   +  L  L++  +         + 
Sbjct: 170 PQQKSIKKS--SRITLKDTQIGQLSNNITFVSKA---VMRLTKLRQFYMGNSPFVAENIC 224

Query: 213 SS-------------------ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
            +                    N   LT +++       ++P+ L  L  ++ +++  N+
Sbjct: 225 EAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 254 FNSA--------VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG 305
             S          L        ++++ +  N L+       L  +  +  L   +N +L 
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLE 343

Query: 306 GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHL--TN 363
           GK+P +FG   KL S ++A  ++++  +   G        ++E+L     ++  ++    
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTE-----QVENLSFAHNKL-KYIPNIF 396

Query: 364 QLGQFKRLNFLGLSNNQMDG-------SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
                  ++ +  S N++          +  +  +  N+ S++LSNN+++    E+ F  
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FST 455

Query: 417 LTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST 476
            + L S     N L  +I  N +                            L  +D+   
Sbjct: 456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL----------------LTSIDLRFN 498

Query: 477 RISDKIPRAFWNSIFQY-YYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNA 535
           +++ K+   F  +   Y   +++S N      P          +  S L    F + N  
Sbjct: 499 KLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQ-------PLNSSTL--KGFGIRNQ- 546

Query: 536 LSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMS 595
                                     N      P+     P L  L +G+N+    +   
Sbjct: 547 ---------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEK 584

Query: 596 IGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636
           I    ++  L++++N    +  +    +       +  ++ 
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  160 bits (406), Expect = 4e-41
 Identities = 69/514 (13%), Positives = 134/514 (26%), Gaps = 127/514 (24%)

Query: 364 QLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF 423
            L    R+  L L      G +P ++GQ+  LE L L ++             ++  +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS- 134

Query: 424 LANANSLIFKINPNWVPPF------QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR 477
                 +       +V          L    + S           ++  K   +   S  
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALS 537
           I+  + +A                                     L     F + N+   
Sbjct: 195 IT-FVSKAVMRL-------------------------------TKL---RQFYMGNSPFV 219

Query: 538 GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIG 597
                         +  E          +     W N   L  + + N      LP  + 
Sbjct: 220 AENI---------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 598 TLTSLRSLNLRNNRL--------SGVIPTSFKNFSILEALDVGENEL-VGSIPTWIGERF 648
            L  ++ +N+  NR                      ++ + +G N L    + T +  + 
Sbjct: 271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQ-KM 329

Query: 649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708
            +L +L    N+  G  P        L  L++AYN +                       
Sbjct: 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGF------------- 375

Query: 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP--VEVTNLQG 766
                                             V ++  + N     IP   +  ++  
Sbjct: 376 -------------------------------TEQVENLSFAHNKLK-YIPNIFDAKSVSV 403

Query: 767 LQSLNLSHNLFTG-------RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 819
           + +++ S+N            +        ++ S++ S NQ+S    +  S  S L+ +N
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463

Query: 820 LSNNNLNG-----------EIPSSTQLQSFDASS 842
           L  N L                ++  L S D   
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  134 bits (340), Expect = 6e-33
 Identities = 45/313 (14%), Positives = 100/313 (31%), Gaps = 24/313 (7%)

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWP--------RLRTLNLGNNNFTGSLPMSIGT 598
           G+N+S+     +   N       D W   P        R+  L+L     +G +P +IG 
Sbjct: 44  GKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ 103

Query: 599 LTSLRSLNLRNNRLSG----VIPTSFKNFSILEALDVGENELVGSIPTWIG-ERFSRLMI 653
           LT L  L L ++          P         E           +   +   E FS L+ 
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 654 LILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILY 713
             + S+                  +    N++   + + +   + +      +       
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAEN 222

Query: 714 AFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLS 773
                     + +   K   ++++++ +L   +++       ++P  +  L  +Q +N++
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNLKDL-TDVEVYNCPNLTKLPTFLKALPEMQLINVA 281

Query: 774 HNLFT--------GRIPDNIGVMRSIESLDFSANQL-SGQIPQSMSNLSFLNYLNLSNNN 824
            N            +   +  V   I+ +    N L +  +  S+  +  L  L    N 
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341

Query: 825 LNGEIPSSTQLQS 837
           L G++P+      
Sbjct: 342 LEGKLPAFGSEIK 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 12/103 (11%), Positives = 37/103 (35%), Gaps = 4/103 (3%)

Query: 730 KGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 789
             ++ +Y ++  +  +++    +  G       N     + N   +++  +   ++    
Sbjct: 26  AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKELDMWGAQPGVSLNSNG 81

Query: 790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832
            +  L       SG++P ++  L+ L  L L ++         
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  212 bits (541), Expect = 5e-59
 Identities = 106/582 (18%), Positives = 191/582 (32%), Gaps = 60/582 (10%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
                 L+ S N    IQ     + L+NL +L+L++ +   +      +   L  L L+ 
Sbjct: 32  PNSTECLEFSFNVLPTIQ-NTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
               L     + LSG   L+HL+     +S      L  ++  +L+ L L    +    L
Sbjct: 91  N--PLIFMAETALSGPKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKL 146

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKH--LDLYSNQFNSAVLGWLSKLNDLE 269
                   L  LD   N         + +L    +  L+L  N       G        +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQ 205

Query: 270 VLSLEDNRLQGD-ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
            L+    +        L    + S+        D      P  F  LC+++         
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMD-DEDISPAVFEGLCEMS--------- 255

Query: 329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
                             +ES+ L+    F   +N    F  L  L L+   +   +P  
Sbjct: 256 ------------------VESINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSG 296

Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVL 447
           L  ++ L+ L LS NK    + +I   N   L       N+   ++    +     L  L
Sbjct: 297 LVGLSTLKKLVLSANKFEN-LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 448 ELRSCHLG--PRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYG 505
           +L    +       L L+    L  L++S          AF     Q   L+++  ++  
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRL-- 412

Query: 506 GVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565
              K      P      L    + +LS++ L  S   L          ++ L L  NHF 
Sbjct: 413 ---KVKDAQSPFQNLHLLK---VLNLSHSLLDISSEQLFDG----LPALQHLNLQGNHFP 462

Query: 566 EGIPDCW---MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
           +G            RL  L L   + +     +  +L  +  ++L +NRL+     +  +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD 664
              +  L++  N +   +P+ +    S+   + LR N     
Sbjct: 523 LKGIY-LNLASNHISIILPSLLP-ILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  202 bits (515), Expect = 2e-55
 Identities = 103/641 (16%), Positives = 192/641 (29%), Gaps = 104/641 (16%)

Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
           K        L+  P       +S   L+ S N       +    L +L  LDL   Q   
Sbjct: 15  KTYNCENLGLNEIP---GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 257 AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316
                    + L+ L L  N L   ++   L    +++ L       +            
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQT-GISSIDFIPLHNQK 129

Query: 317 KLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN--FL 374
            L S  + S  +S   S  L          L+ L  +   I       +   ++     L
Sbjct: 130 TLESLYLGSNHIS---SIKLPKGFPTEK--LKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTV-SEIHFVNLTKLV--SFLANANSLI 431
            L+ N +   I       A  +SL+    +    +   +    +  L   +F    +  I
Sbjct: 185 NLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 432 FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
                  +    +  + L+  +              L +LD+++T +S+ +P        
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVG--- 299

Query: 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS 551
                                         +L       LS N              + S
Sbjct: 300 ----------------------------LSTL---KKLVLSANKFENLC------QISAS 322

Query: 552 --KNIEFLKLSTNHFSEGIPDCWM-NWPRLRTLNLGNNNFTGS--LPMSIGTLTSLRSLN 606
              ++  L +  N     +    + N   LR L+L +++   S    + +  L+ L+SLN
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
           L  N    +   +FK    LE LD+    L         +    L +L L  +       
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
                L +LQ L++  N       +  N+   +                           
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-------------------------GR 477

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786
           L                  + +S  + S       T+L+ +  ++LSHN  T    + + 
Sbjct: 478 L----------------EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

Query: 787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827
            ++ I  L+ ++N +S  +P  +  LS    +NL  N L+ 
Sbjct: 522 HLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  158 bits (401), Expect = 1e-40
 Identities = 92/463 (19%), Positives = 160/463 (34%), Gaps = 45/463 (9%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLR--YLNLSQARFTGMIPHQL 138
           +     P     + L  LD   N    +   + ++SL       LNL+     G I    
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLS-KEDMSSLQQATNLSLNLNGNDIAG-IEPGA 198

Query: 139 GNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKE 198
            + +  Q L+  G    L        S +  L       ++    S ++       S++ 
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 199 LKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAV 258
           + L      +    +   FS L  LDL+      ++PS L  L++LK L L +N+F +  
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 259 LGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND-ELGGKIPTSFGKLCK 317
               S    L  LS++ N  + ++ +  L+NL ++++L LS +D E           L  
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 318 LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFG-HLTNQLGQFKRLNFLGL 376
           L S +++  +     +     F  C    LE L L   ++      +       L  L L
Sbjct: 378 LQSLNLSYNEPLSLKT---EAFKECPQ--LELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432

Query: 377 SNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINP 436
           S++ +D S       +  L+ L+L  N      +     +L  L                
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPK-GNIQKTNSLQTLGR-------------- 477

Query: 437 NWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYL 496
                  L +L L  C L           K +N +D+S  R++     A  +   +  YL
Sbjct: 478 -------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYL 528

Query: 497 NVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGS 539
           N++ N I             L I          +L  N L  +
Sbjct: 529 NLASNHISI------ILPSLLPILSQQ---RTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  141 bits (357), Expect = 4e-35
 Identities = 72/330 (21%), Positives = 125/330 (37%), Gaps = 41/330 (12%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
              L  LDL+       ++P  L  L  L+ L LS  +F  +      N  +L +L + G
Sbjct: 277 FSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334

Query: 152 --VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF 209
                EL       L  L  L  L +S  ++  +    L + +L  L+ L LS+ E    
Sbjct: 335 NTKRLELGTGC---LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391

Query: 210 PLLSSANFSSLTTLDLSGNQFQGQIP-SRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
              +      L  LDL+  + + +   S   NL  LK L+L  +  + +       L  L
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451

Query: 269 EVLSLEDNRLQGDISSL--GLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
           + L+L+ N            L  L  ++ L+LS+ D L      +F  L  +    ++  
Sbjct: 452 QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN 510

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
           +L+    E L          L+ +YL                       L++N +   +P
Sbjct: 511 RLTSSSIEALS--------HLKGIYLN----------------------LASNHISIILP 540

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
             L  ++   +++L  N L+ T S I+F+ 
Sbjct: 541 SLLPILSQQRTINLRQNPLDCTCSNIYFLE 570

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 79  SMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL 138
                +   SL  L  L  L LS  D   I       SL  + +++LS  R T      L
Sbjct: 462 PKGNIQKTNSLQTLGRLEILVLSFCDLSSI-DQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 139 GNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLS 181
            +L  + YL+L+  +  +     S L  LS    + +    L 
Sbjct: 521 SHLKGI-YLNLASNH--ISIILPSLLPILSQQRTINLRQNPLD 560

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  203 bits (519), Expect = 4e-56
 Identities = 103/553 (18%), Positives = 197/553 (35%), Gaps = 38/553 (6%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
              ++DLS N  + ++     ++   L++L+LS+     +       L +L  L L+G  
Sbjct: 33  STKNIDLSFNPLKILK-SYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN- 90

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS 213
             + + +    SGL+ LE+L      L+      +    L +LK+L ++   +H   L +
Sbjct: 91  -PIQSFSPGSFSGLTSLENLVAVETKLASLESFPI--GQLITLKKLNVAHNFIHSCKLPA 147

Query: 214 S-ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK----HLDLYSNQFNSAVLGWLSKLNDL 268
             +N ++L  +DLS N  Q    + L  L         LD+  N  +         +  L
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-L 206

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK-----IPTSFGKLCKLTSFSM 323
             L+L  N    +I    L NL  +    L   +    +      P+    LC +T    
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
             T    D S+ +  F       + ++ L G  I       + +  +   L +   Q+  
Sbjct: 267 RLTYT-NDFSDDIVKFHCL--ANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQ 321

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
                   +  L+SL L+ NK + +  ++   +L+ L     NA S     + + +    
Sbjct: 322 ---FPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYL-DLSRNALSFSGCCSYSDLGTNS 377

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           L  L+L                ++L  LD   + +      + + S+ +  YL++S    
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
                         +   SL   +   ++ N+   +    +        N+ FL LS   
Sbjct: 437 KI------DFDGIFLGLTSL---NTLKMAGNSFKDNTLSNVFANT---TNLTFLDLSKCQ 484

Query: 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF 623
             +     +    RL+ LN+ +NN           L SL +L+   NR+           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFP 544

Query: 624 SILEALDVGENEL 636
             L   ++  N +
Sbjct: 545 KSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (490), Expect = 4e-52
 Identities = 107/616 (17%), Positives = 175/616 (28%), Gaps = 94/616 (15%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            SS   +DLS N  +        N + L+ LDL   +  +        L+ L  L L  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
            +Q   S      LTS++ L+      L        G+L  L   ++A   +     ++ 
Sbjct: 91  PIQS-FSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHS--CKLP 146

Query: 337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF----LGLSNNQMDGSIPLSLGQM 392
             FS      L  + L    I     N L   +        L +S N +   I     Q 
Sbjct: 147 AYFSNLTN--LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQAFQG 203

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
             L  L L  N  +  + +    NL  L                  +      +  L   
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGL-HVHRLILGEFKDERNLEIFEPS-IMEGLCDV 261

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
                          +++  ++ T         F         ++++G  I         
Sbjct: 262 T--------------IDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSI--------K 298

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW 572
               +             +    L                 ++ L L+ N  S  I    
Sbjct: 299 YLEDVPKHFKW---QSLSIIRCQLKQFPT-------LDLPFLKSLTLTMNKGS--ISFKK 346

Query: 573 MNWPRLRTLNLGNNNFT--GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630
           +  P L  L+L  N  +  G    S     SLR L+L  N    ++  +F     L+ LD
Sbjct: 347 VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLD 405

Query: 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP 690
              + L             +L+ L +       DF      L SL  L +A NS      
Sbjct: 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

Query: 691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISM 750
                                   F+                          +  +D+S 
Sbjct: 466 SN---------------------VFAN----------------------TTNLTFLDLSK 482

Query: 751 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 810
                        L  LQ LN+SHN        +   + S+ +LD S N++         
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542

Query: 811 NLSFLNYLNLSNNNLN 826
               L + NL+NN++ 
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  152 bits (387), Expect = 6e-39
 Identities = 96/559 (17%), Positives = 187/559 (33%), Gaps = 48/559 (8%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
            + +   L HL +L L+GN  Q    P   + L +L  L   + +   +    +G L  L
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 145 QYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLL--VINSLHSLKELKLS 202
           + L+++  +     +  ++ S L+ L H+ +S+  +   + + L  +  +      L +S
Sbjct: 131 KKLNVAHNFIH-SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 203 FCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSN---QFNSAV 258
              +      +      L  L L GN     I    L NL  L    L         +  
Sbjct: 190 LNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248

Query: 259 LGWLSKLNDLEVLSLEDNRLQG----DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
           +   S +  L  +++++ RL          +    L ++  + L+       K      K
Sbjct: 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI---KYLEDVPK 305

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
             K  S S+   +L Q  +  L          L+SL L   +    ++ +      L++L
Sbjct: 306 HFKWQSLSIIRCQLKQFPTLDLP--------FLKSLTLTMNKG--SISFKKVALPSLSYL 355

Query: 375 GLSNNQMDGSIPLSLGQMA--NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF 432
            LS N +  S   S   +   +L  LDLS N     +   +F+ L +L       ++L  
Sbjct: 356 DLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKR 413

Query: 433 KINPN-WVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
               + ++   +L  L++   +    F         LN L ++     D      + +  
Sbjct: 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS 551
              +L++S  Q+                   L    + ++S+N L         Q     
Sbjct: 474 NLTFLDLSKCQLEQ------ISWGVFDTLHRL---QLLNMSHNNLLFLDSSHYNQ----L 520

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
            ++  L  S N               L   NL NN+    +      L  ++        
Sbjct: 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVN 579

Query: 612 LSGVI---PTSFKNFSILE 627
           +  +    P       +L+
Sbjct: 580 VEQMTCATPVEMNTSLVLD 598

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  144 bits (365), Expect = 4e-36
 Identities = 73/374 (19%), Positives = 120/374 (32%), Gaps = 38/374 (10%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI------PHQ 137
            I     +   L  L L GN      +   L +L  L    L    F          P  
Sbjct: 195 FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254

Query: 138 LGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLK 197
           +  L ++   +    Y    ++ I     L+ +  + ++ V++    D    +      +
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED----VPKHFKWQ 310

Query: 198 ELKLSFCELHHFP-------------------LLSSANFSSLTTLDLSGNQFQGQIPSRL 238
            L +  C+L  FP                           SL+ LDLS N          
Sbjct: 311 SLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSY 370

Query: 239 GNL--TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
            +L   SL+HLDL  N     +      L +L+ L  + + L+         +L  +  L
Sbjct: 371 SDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429

Query: 297 LLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQ 356
            +S+           F  L  L +  MA      +      +F+      L  L L  CQ
Sbjct: 430 DISYT-NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS--NVFANTTN--LTFLDLSKCQ 484

Query: 357 IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
           +            RL  L +S+N +         Q+ +L +LD S N++  T   I    
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHF 543

Query: 417 LTKLVSFLANANSL 430
              L  F    NS+
Sbjct: 544 PKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  131 bits (332), Expect = 5e-32
 Identities = 80/429 (18%), Positives = 141/429 (32%), Gaps = 47/429 (10%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGI--------------------------QIPKYLASL 117
           K+      L +LVH+DLS N  Q I                           I       
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG 203

Query: 118 VNLRYLNLSQARFTGMIP-HQLGNLSNLQYLDLSGVYFE----LHAETISWLSGLSLLEH 172
           + L  L L     +  I    L NL+ L    L    F+    L     S + GL  +  
Sbjct: 204 IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG 232
                   +  SD ++  + L ++  + L+   + +             +L +   Q + 
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLK- 320

Query: 233 QIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLT 291
           Q P+   +L  LK L L  N+ +         L  L  L L  N L      S       
Sbjct: 321 QFPT--LDLPFLKSLTLTMNKGSI--SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 292 SIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
           S++ L LS+N  +   +  +F  L +L       + L +        F      +L  L 
Sbjct: 377 SLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLE--KLLYLD 430

Query: 352 LRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNKLNGTVS 410
           +                  LN L ++ N    +   +      NL  LDLS  +L     
Sbjct: 431 ISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490

Query: 411 EIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLND 470
            + F  L +L     + N+L+F  + ++   + L+ L+     +     +     K L  
Sbjct: 491 GV-FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549

Query: 471 LDISSTRIS 479
            ++++  ++
Sbjct: 550 FNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 2e-30
 Identities = 64/352 (18%), Positives = 120/352 (34%), Gaps = 28/352 (7%)

Query: 58  HVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASL 117
           HV  L L       + E ++ S++ G  + ++ E        L+  +            L
Sbjct: 232 HVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF------RLTYTNDFSDD-IVKFHCL 284

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
            N+  ++L+      +    +      Q L +     +           L  L+ L ++ 
Sbjct: 285 ANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQLKQFPT-----LDLPFLKSLTLTM 337

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF--SSLTTLDLSGNQFQGQIP 235
              S +   +    +L SL  L LS   L      S ++   +SL  LDLS N     + 
Sbjct: 338 NKGSISFKKV----ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392

Query: 236 SRLGNLTSLKHLDLYSNQFNS-AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ 294
           +    L  L+HLD   +             L  L  L +     + D   +    LTS+ 
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI-FLGLTSLN 451

Query: 295 KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
            L ++ N      +   F     LT   ++  +L Q    +           L+ L +  
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH-----RLQLLNMSH 506

Query: 355 CQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
             +    ++   Q   L+ L  S N+++ S  +      +L   +L+NN + 
Sbjct: 507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  110 bits (277), Expect = 3e-25
 Identities = 55/320 (17%), Positives = 101/320 (31%), Gaps = 29/320 (9%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
           ++   + + + LS N         + N+  L+ L+L           +   L  L +L L
Sbjct: 28  DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG-DFP 666
             N +    P SF   + LE L   E +L       IG+    L  L +  N  H    P
Sbjct: 88  TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ-LITLKKLNVAHNFIHSCKLP 146

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
                L +L  +D++YN +        N+   +      + S D+       N I     
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITV---NDLQFLRENPQVNLSLDM-----SLNPIDFIQD 198

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRI---- 781
              +G        + L   + +  N  S  I      NL GL    L    F        
Sbjct: 199 QAFQG--------IKL-HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249

Query: 782 --PDNIGVMR--SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 837
             P  +  +   +I+    +              L+ ++ ++L+  ++   +    +   
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK 308

Query: 838 FDASSFAGNDLCGAPLSSCT 857
           + + S     L   P     
Sbjct: 309 WQSLSIIRCQLKQFPTLDLP 328

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  202 bits (514), Expect = 5e-54
 Identities = 97/668 (14%), Positives = 183/668 (27%), Gaps = 156/668 (23%)

Query: 202 SFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGW 261
                   P +   N   +T L L+G   +G++P  +G LT LK L   ++    +   +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366

Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG---------------- 305
             +    ++     +R++     + LD    +    L  +                    
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426

Query: 306 -----------GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
                        I  +  +L KL     A++  + D   +          + E      
Sbjct: 427 DTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAV----------DWEDANSDY 476

Query: 355 CQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHF 414
            + + +        K L  + L N      +P  L  +  L+SL+++ N+          
Sbjct: 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK-- 534

Query: 415 VNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK--KLNDLD 472
            + T+L                       + +  +   +L   FP    LQK  KL  LD
Sbjct: 535 ADWTRLADDEDTGPK--------------IQIFYMGYNNLE-EFPASASLQKMVKLGLLD 579

Query: 473 ISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLS 532
               ++                                    +    T   L  +   L 
Sbjct: 580 CVHNKVR----------------------------------HLEAFGTNVKL--TDLKLD 603

Query: 533 NNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW--MNWPRLRTLNLGNNNFTG 590
            N +   I    C     +  +E L  S N     IP+ +   +   + +++   N    
Sbjct: 604 YNQIE-EIPEDFCAF---TDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGS 658

Query: 591 -----SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIG 645
                S  M      +  ++ L  N +       F   S +  + +  N +  SIP    
Sbjct: 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSL 717

Query: 646 ERF-------SRLMILILRSNKFHG-DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
           +           L  + LR NK        +   L  L  +DV+YN    + P    N S
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSS 776

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
            +                                          +    D   N    + 
Sbjct: 777 QL--------------------------------------KAFGIRHQRDAEGNRILRQW 798

Query: 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL-SGQIPQSMSNLSFLN 816
           P  +T    L  L +  N     + + +     +  LD + N   S  +      +    
Sbjct: 799 PTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGM 855

Query: 817 YLNLSNNN 824
           Y+ L +  
Sbjct: 856 YVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  201 bits (513), Expect = 6e-54
 Identities = 105/626 (16%), Positives = 190/626 (30%), Gaps = 86/626 (13%)

Query: 104 DFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW 163
           D  G Q    L +   +  L+L+     G +P  +G L+ L+ L        +       
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
                 +       + +      L     L+    L+ +         +   +  SL   
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 224 DLSGNQFQ-GQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDI 282
            +     +   I   +  LT L+ +   ++ F        +   D E  + +  +   + 
Sbjct: 429 QIGNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENE 483

Query: 283 SSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGC 342
                 NL  +  + L     +  ++P     L +L S ++A  +               
Sbjct: 484 EL-SWSNLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLKAD----- 536

Query: 343 VAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLS 401
                          +  L +      ++    +  N ++      SL +M  L  LD  
Sbjct: 537 ---------------WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 402 NNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 461
           +NK+   +    F    K                        LT L+L    +      +
Sbjct: 582 HNKVR-HLEA--FGTNVK------------------------LTDLKLDYNQIEEIPEDF 614

Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITP 521
                ++  L  S  ++          S++    ++ S N+I G   +  S SM      
Sbjct: 615 CAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI-GSEGRNISCSMDDYKGI 673

Query: 522 SLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSE-------GIPDCWMN 574
           +    S   LS N +      L          I  + LS N  +             + N
Sbjct: 674 NA---STVTLSYNEIQKFPTELFAT----GSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 575 WPRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632
              L T++L  N  T SL       TL  L ++++  N  S   PT   N S L+A  + 
Sbjct: 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIR 784

Query: 633 E------NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL 686
                  N ++   PT I      L+ L + SN        +L     L ILD+A N  +
Sbjct: 785 HQRDAEGNRILRQWPTGIT-TCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIADNPNI 840

Query: 687 -GTIPRCINNFSAMATADSSDQSSDI 711
              +        A       D++ DI
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKTQDI 866

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  199 bits (507), Expect = 4e-53
 Identities = 99/680 (14%), Positives = 187/680 (27%), Gaps = 102/680 (15%)

Query: 15  SEREALLKLKHDLRDPSHRLASWIGD----------NGDCCKWGGVLCGNFT--GHVLEL 62
            + +AL  +   L   + R  S   +          N +   WG     +    G V  L
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGL 328

Query: 63  NLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRY 122
           +L                  G++  ++ +L  L  L    +             L     
Sbjct: 329 SLAG------------FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 123 LNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSK 182
                          L     L   DL       + E    +   S +        NL+ 
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP-IKKDSRISLKDTQIGNLTN 435

Query: 183 ASDSL-LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNL 241
               +   I  L  L+ +  +     +  +            +    +          NL
Sbjct: 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNL 490

Query: 242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             L  ++LY+    + +  +L  L +L+ L++  NR              S  +L   W 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG------------ISAAQLKADWT 538

Query: 302 DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI---- 357
                ++        K+  F M    L +  +         V  +L  L     ++    
Sbjct: 539 -----RLADDEDTGPKIQIFYMGYNNLEEFPAS--ASLQKMV--KLGLLDCVHNKVRHLE 589

Query: 358 -FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ-MANLESLDLSNNKLNGTVSEIHFV 415
            FG           L  L L  NQ++  IP         +E L  S+NKL    +  +  
Sbjct: 590 AFGTNVK-------LTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 416 NLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS 475
           ++  + S   + N              ++             +          + + +S 
Sbjct: 642 SVYVMGSVDFSYN--------------KIGSEGRNISCSMDDYKG-----INASTVTLSY 682

Query: 476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNA 535
             I       F         + +S N +   +P+            + LL +  DL  N 
Sbjct: 683 NEIQKFPTELFATG-SPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLL-TTIDLRFNK 739

Query: 536 LSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNL------GNNNFT 589
           L+                +  + +S N FS   P   +N  +L+   +        N   
Sbjct: 740 LTSLSDDFRATT---LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL-VGSIPTWIGERF 648
              P  I T  SL  L + +N +  V          L  LD+ +N      + +      
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIE 852

Query: 649 SRLMILILRSNKFHGDFPIQ 668
           + + +L+    +        
Sbjct: 853 AGMYVLLYDKTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (392), Expect = 9e-39
 Identities = 73/521 (14%), Positives = 136/521 (26%), Gaps = 125/521 (23%)

Query: 355 CQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHF 414
                     L    R+  L L+     G +P ++GQ+  L+ L    +    +      
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368

Query: 415 VNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL-----GPRFPLWLQLQKKLN 469
             LT  +S        +           +L + +L    +             ++  K  
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428

Query: 470 DLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIF 529
            +   + RI+  I +A                                     L    I 
Sbjct: 429 QIGNLTNRIT-FISKAIQR-------------------------------LTKL---QII 453

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
             +N+  +     +           E          E     W N   L  + L N    
Sbjct: 454 YFANSPFTYDNIAVDW---------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGV---------IPTSFKNFSILEALDVGENELVGSI 640
             LP  +  L  L+SLN+  NR             +         ++   +G N L    
Sbjct: 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564

Query: 641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA 700
            +   ++  +L +L    NK              L  L + YN +   IP     F    
Sbjct: 565 ASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQI-EEIPEDFCAF---- 617

Query: 701 TADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP-- 758
                                                   + V  +  S N     IP  
Sbjct: 618 ---------------------------------------TDQVEGLGFSHNKLK-YIPNI 637

Query: 759 VEVTNLQGLQSLNLSHNLFTGRIPDNIGV------MRSIESLDFSANQLSGQIPQSMSNL 812
               ++  + S++ S+N        NI          +  ++  S N++     +  +  
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATG 696

Query: 813 SFLNYLNLSNNNL-----------NGEIPSSTQLQSFDASS 842
           S ++ + LSNN +           +G   ++  L + D   
Sbjct: 697 SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 1e-21
 Identities = 36/297 (12%), Positives = 83/297 (27%), Gaps = 32/297 (10%)

Query: 557 LKLSTNHFSEGIPDCW---MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS 613
           L      +  G  +     +NW      N   + +     + +     +  L+L      
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLA 673
           G +P +    + L+ L  G +    S   +  E  +  M    +         + L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 674 SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFL 733
            L + D+  +++             +     S  S       +  N+I   T +      
Sbjct: 397 RLNLSDLLQDAINR-----NPEMKPIKK--DSRISLKDTQIGNLTNRI---TFI------ 440

Query: 734 VEYNSILNLV--RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791
               +I  L   + I  + + F+ +           +  N  +         +   ++ +
Sbjct: 441 --SKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDL 848
             ++        Q+P  + +L  L  LN++ N                     G  +
Sbjct: 494 TDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  180 bits (457), Expect = 7e-47
 Identities = 122/611 (19%), Positives = 208/611 (34%), Gaps = 81/611 (13%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI-PHQLGNLSNLQYLDLS 150
           L     L LS N  + +        L  L+ L L        I      NL NL+ LDL 
Sbjct: 23  LNTTERLLLSFNYIRTVT-ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81

Query: 151 GVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
               +++        GL  L  L + F  LS A        +L +L  L LS  ++    
Sbjct: 82  --SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 211 LLSS-ANFSSLTTLDLSGNQFQGQIPSRLGNLT--SLKHLDLYSNQFNS-AVLGWLSKLN 266
           L  S    +SL ++D S NQ        L  L   +L    L +N   S   + W   +N
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
               + LE   + G        N  ++       N  +      S      +        
Sbjct: 200 PFRNMVLEILDVSG--------NGWTVDITGNFSN-AISKSQAFSLILAHHIMGAGFGFH 250

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
            +  D  +    F+G     +  L L    +F   +      K L  L L+ N+++    
Sbjct: 251 NIK-DPDQ--NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV 446
            +   + NL+ L+LS N L   +   +F  L K                        +  
Sbjct: 308 EAFYGLDNLQVLNLSYNLLG-ELYSSNFYGLPK------------------------VAY 342

Query: 447 LELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGG 506
           ++L+  H+        +  +KL  LD+    ++        + I     + +SGN++   
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT------IHFIPSIPDIFLSGNKL--- 393

Query: 507 VPKFDSPSMPLIITPSLLLGSIFDLSNNALSG-SIFHLICQGENFSKNIEFLKLSTNHFS 565
                     + +    L  ++  LS N L    I + + +      +++ L L+ N FS
Sbjct: 394 ----------VTLPKINLTANLIHLSENRLENLDILYFLLR----VPHLQILILNQNRFS 439

Query: 566 EGIPDCWMNW-PRLRTLNLGNNNFTGSLPMSI-----GTLTSLRSLNLRNNRLSGVIPTS 619
               D   +  P L  L LG N    +    +       L+ L+ L L +N L+ + P  
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 620 FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILD 679
           F + + L  L +  N L   +        + L IL +  N+             SL +LD
Sbjct: 500 FSHLTALRGLSLNSNRLT-VLSHND--LPANLEILDISRNQLLA---PNPDVFVSLSVLD 553

Query: 680 VAYNSLLGTIP 690
           + +N  +    
Sbjct: 554 ITHNKFICECE 564

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  159 bits (405), Expect = 2e-40
 Identities = 130/752 (17%), Positives = 233/752 (30%), Gaps = 149/752 (19%)

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYS 251
           L++ + L LSF  +      S      L  L+L        I      NL +L+ LDL S
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGD-ISSLGLDNLTSIQKLLLSWNDELGGKIPT 310
           ++           L  L  L L    L    +      NL ++ +L LS N      +  
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 311 SFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI-------FGHLTN 363
           SFGKL  L S   +S ++   + E            L    L    +       +G   N
Sbjct: 143 SFGKLNSLKSIDFSSNQIFL-VCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 364 QLGQFKRLNFLGLSNNQM------------DGSIPLSLGQMANLESLDLSNNKLNGTVSE 411
              +   L  L +S N                S   SL    ++       + +     +
Sbjct: 200 PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQ 257

Query: 412 IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL 471
             F  L +                        +  L+L    +        +  K L  L
Sbjct: 258 NTFAGLARS----------------------SVRHLDLSHGFVFSLNSRVFETLKDLKVL 295

Query: 472 DISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDL 531
           +++  +I+     AF+  +     LN+S N +                          +L
Sbjct: 296 NLAYNKINKIADEAFYG-LDNLQVLNLSYNLLG-------------------------EL 329

Query: 532 SNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS 591
            ++   G               + ++ L  NH +      +    +L+TL+L +N  T  
Sbjct: 330 YSSNFYG------------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-- 375

Query: 592 LPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRL 651
              +I  + S+  + L  N+L  +   +         + + EN L      +   R   L
Sbjct: 376 ---TIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHL 428

Query: 652 MILILRSNKFHGDFPIQLCR-LASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD 710
            ILIL  N+F      Q      SL+ L +  N L       +                 
Sbjct: 429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW--------------- 473

Query: 711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQS 769
               F G                      L+ ++ + ++ N  +  +P  V ++L  L+ 
Sbjct: 474 --DVFEG----------------------LSHLQVLYLNHNYLN-SLPPGVFSHLTALRG 508

Query: 770 LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 829
           L+L+ N  T  +  N  +  ++E LD S NQL    P    +LS    L++++N    E 
Sbjct: 509 LSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS---VLDITHNKFICEC 563

Query: 830 PSST-----QLQSFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRIGNEEDGDEVDWTLY 884
             ST        +   +    +  C  P S      ++ +        EE    + ++L+
Sbjct: 564 ELSTFINWLNHTNVTIAGPPADIYCVYPDSFS--GVSLFSLSTEGCDEEEVLKSLKFSLF 621

Query: 885 VSMALGFVVGFWCFIGPLLSNKRWRYKYFHFL 916
           +   +   +     +            Y    
Sbjct: 622 IVCTVTLTLFLMTILTVTKFRGFCFICYKTAQ 653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  151 bits (383), Expect = 9e-38
 Identities = 111/631 (17%), Positives = 200/631 (31%), Gaps = 118/631 (18%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
                          Q+P     L + + L L  N   +        L  L++L L    
Sbjct: 4   FDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59

Query: 278 LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG 337
               I      NL +++ L L  +               K+                   
Sbjct: 60  TPLTIDKEAFRNLPNLRILDLGSS---------------KIYFLHP-------------D 91

Query: 338 IFSGCVAYELESLYLRGCQI--FGHLTNQLGQFKRLNFLGLSNNQMDG-SIPLSLGQMAN 394
            F G   + L  L L  C +             K L  L LS NQ+    +  S G++ +
Sbjct: 92  AFQGL--FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNS 149

Query: 395 LESLDLSNNKLNGTVSEIHFVNLT--KLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
           L+S+D S+N++   V E     L    L  F   ANSL  +++ +W              
Sbjct: 150 LKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN----- 203

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
                          L  LD+S    +  I   F N+I                   F  
Sbjct: 204 -------------MVLEILDVSGNGWTVDITGNFSNAI--------------SKSQAFSL 236

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW 572
                I+       +I D   N  +G              ++  L LS           +
Sbjct: 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLA----------RSSVRHLDLSHGFVFSLNSRVF 286

Query: 573 MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG 632
                L+ LNL  N        +   L +L+ LNL  N L  +  ++F     +  +D+ 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRC 692
           +N +   I     +   +L  L LR N         +  + S+  + ++ N L+ T+P+ 
Sbjct: 347 KNHI-AIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV-TLPKI 399

Query: 693 INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN 752
               + +  +++  ++ DILY                          +  ++ + ++ N 
Sbjct: 400 NLTANLIHLSENRLENLDILYFLLR----------------------VPHLQILILNQNR 437

Query: 753 FSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-----MRSIESLDFSANQLSGQIP 806
           FS        +    L+ L L  N+        +       +  ++ L  + N L+   P
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497

Query: 807 QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 837
              S+L+ L  L+L++N L   +  +    +
Sbjct: 498 GVFSHLTALRGLSLNSNRLT-VLSHNDLPAN 527

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  145 bits (368), Expect = 6e-36
 Identities = 92/553 (16%), Positives = 180/553 (32%), Gaps = 74/553 (13%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI--PHQLGNLSNLQ 145
           +   L +L  LDL  +    +  P     L +L  L L     +  +       NL  L 
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126

Query: 146 YLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE 205
            LDLS                L+ L+ +  S   +    +  L      +L    L+   
Sbjct: 127 RLDLSKNQIR-SLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185

Query: 206 LHHFP------LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVL 259
           L+          ++      L  LD+SGN +            ++     +SN  + +  
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGW------------TVDITGNFSNAISKSQA 233

Query: 260 GWLSKLNDLEVLSLEDNRLQG-DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKL 318
             L   + +       + ++  D ++      +S++ L LS    +       F  L  L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDL 292

Query: 319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSN 378
              ++A  K+++ I++    F G     L+ L L    +    ++      ++ ++ L  
Sbjct: 293 KVLNLAYNKINK-IAD--EAFYGL--DNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347

Query: 379 NQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNW 438
           N +      +   +  L++LDL +N L           +  +     + N L+  +    
Sbjct: 348 NHIAIIQDQTFKFLEKLQTLDLRDNALT------TIHFIPSIPDIFLSGNKLV-TLPKIN 400

Query: 439 VPPFQLTVLELRSCHLGPRFPLWLQLQ-KKLNDLDISSTRISDKIPRAFWNSIFQYYYLN 497
                  ++ L    L     L+  L+   L  L ++  R S        +       L 
Sbjct: 401 ---LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 498 VSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL 557
           +  N +             L     L       LS                    +++ L
Sbjct: 458 LGENMLQ------------LAWETELCWDVFEGLS--------------------HLQVL 485

Query: 558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP 617
            L+ N+ +   P  + +   LR L+L +N  T  L  +     +L  L++  N+L    P
Sbjct: 486 YLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNP 543

Query: 618 TSFKNFSILEALD 630
             F + S+L+   
Sbjct: 544 DVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  131 bits (331), Expect = 2e-31
 Identities = 70/383 (18%), Positives = 129/383 (33%), Gaps = 28/383 (7%)

Query: 61  ELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLV-- 118
            L++       D      + +      SL+   H++      ++ +        A L   
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPD-QNTFAGLARS 266

Query: 119 NLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAETISWLSGLSLLEHLYISF 177
           ++R+L+LS      +       L +L+ L+L+      +  E      GL  L+ L +S+
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA---FYGLDNLQVLNLSY 323

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
             L +   S      L  +  + L    +      +      L TLDL  N       + 
Sbjct: 324 NLLGELYSSNF--YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TT 376

Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
           +  + S+  + L  N+  +     L+      ++ L +NRL+       L  +  +Q L+
Sbjct: 377 IHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL--GIFSGCVAYELESLYLRGC 355
           L+ N         +  +   L    +    L       L   +F G     L+ LYL   
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSH--LQVLYLNHN 490

Query: 356 QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFV 415
            +             L  L L++N++       L   ANLE LD+S N+L       +  
Sbjct: 491 YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQL----LAPNPD 544

Query: 416 NLTKLVSFLANANSLIFKINPNW 438
               L       N  I +   + 
Sbjct: 545 VFVSLSVLDITHNKFICECELST 567

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  127 bits (321), Expect = 3e-30
 Identities = 82/583 (14%), Positives = 168/583 (28%), Gaps = 112/583 (19%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASL--VNLRYLNLSQARFTGMIPHQLGNL 141
            ++PS  +L  L  +D S N    +     L  L    L + +L+       +    G  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 142 SN------LQYLDLSGVYF----------ELHAETISWLSGLSLLEHLYISFVNLSKASD 185
            N      L+ LD+SG  +           +       L     +      F N+     
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 186 SLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK 245
           +     +  S++ L LS   +             L  L+L+ N+           L +L+
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317

Query: 246 HLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG 305
            L+L  N            L  +  + L+ N +   I       L  +Q L L  N    
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQDQTFKFLEKLQTLDLRDN---- 372

Query: 306 GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL 365
                       LT+     +                    +  ++L G ++       L
Sbjct: 373 -----------ALTTIHFIPS--------------------IPDIFLSGNKLVTLPKINL 401

Query: 366 GQFKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFL 424
                 N + LS N+++   I   L ++ +L+ L L+ N+ +    +        L    
Sbjct: 402 ----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 425 ANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPR 484
              N L        +       L                    L  L ++   ++  +P 
Sbjct: 458 LGENMLQL-AWETELCWDVFEGL------------------SHLQVLYLNHNYLNS-LPP 497

Query: 485 AFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS--IFDLSNNALSGSIFH 542
             ++ +     L+++ N++              +++ + L  +  I D+S N L      
Sbjct: 498 GVFSHLTALRGLSLNSNRL-------------TVLSHNDLPANLEILDISRNQLLAPN-- 542

Query: 543 LICQGENFSKNIEFLKLSTNHFSEGIPDCW-MNWPRLRTLNLGNNNFTGSLPMSIGTLTS 601
                 +   ++  L ++ N F         +NW     + +               +  
Sbjct: 543 -----PDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPP---------ADIYC 588

Query: 602 LRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWI 644
           +   +     L  +         +L++L      +     T  
Sbjct: 589 VYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLF 631

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  173 bits (441), Expect = 5e-46
 Identities = 118/560 (21%), Positives = 204/560 (36%), Gaps = 65/560 (11%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
              +LDLS N  + +       S   L+ L+LS+     +      +LS+L  L L+G  
Sbjct: 29  STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN- 86

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS 213
             + +  +   SGLS L+ L     NL+   +    I  L +LKEL ++   +  F L  
Sbjct: 87  -PIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 214 S-ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK----HLDLYSNQFNSAVLGWLSKLNDL 268
             +N ++L  LDLS N+ Q    + L  L  +      LDL  N  N    G   ++  L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-L 202

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND-----ELGGKIPTSFGKLCKLTSFSM 323
             L+L +N    ++    +  L  ++   L   +      L     ++   LC LT    
Sbjct: 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262

Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
               L   + +I+ +F+      + S  L    I                L L N +   
Sbjct: 263 RLAYLDYYLDDIIDLFNCL--TNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQ 318

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLA-NANSLIFKINPNWVPPF 442
                  ++ +L+ L  ++NK     SE+   +L  L   L+ N  S     + +     
Sbjct: 319 ---FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL--DLSRNGLSFKGCCSQSDFGTT 373

Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
            L  L+L    +      +L L ++L  LD   + +      + + S+    YL++S   
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN 562
                                         N   +G              ++E LK++ N
Sbjct: 433 TR-------------------------VAFNGIFNGL------------SSLEVLKMAGN 455

Query: 563 HFSEGI-PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK 621
            F E   PD +     L  L+L         P +  +L+SL+ LN+ +N+L  V    F 
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

Query: 622 NFSILEALDVGENELVGSIP 641
             + L+ + +  N    S P
Sbjct: 516 RLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (412), Expect = 2e-42
 Identities = 117/568 (20%), Positives = 190/568 (33%), Gaps = 63/568 (11%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYIS 176
                LN  +      IP  L    + + LDLS      L + +         L+ L +S
Sbjct: 12  YQCMELNFYK------IPDNLP--FSTKNLDLSFNPLRHLGSYS---FFSFPELQVLDLS 60

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
              +    D      SL  L  L L+   +    L + +  SSL  L             
Sbjct: 61  RCEIQTIEDG--AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118

Query: 237 RLGNLTSLKHLDLYSNQFNSAVLGW-LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQK 295
            +G+L +LK L++  N   S  L    S L +LE L L  N++Q  I    L  L  +  
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL 177

Query: 296 LLLSWNDELGG----KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
           L LS +  L       I     K  +L   ++ +   S ++ +      G    E+  L 
Sbjct: 178 LNLSLD--LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLV 233

Query: 352 LRGCQIFGHLT----NQLGQFKRLNFLGLSNNQMDGS---IPLSLGQMANLESLDLSNNK 404
           L   +  G+L     + L     L         +D     I      + N+ S  L +  
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293

Query: 405 LNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQL 464
           +       +      L                +      L  L   S   G  F   + L
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSNKGGNAFSE-VDL 346

Query: 465 QKKLNDLDISSTRISDK-IPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSL 523
              L  LD+S   +S K              YL++S N +      F            L
Sbjct: 347 -PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-------LEQL 398

Query: 524 LLGSIFDLSNNALS----GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLR 579
                 D  ++ L      S+F          +N+ +L +S  H        +     L 
Sbjct: 399 ---EHLDFQHSNLKQMSEFSVFLS-------LRNLIYLDISHTHTRVAFNGIFNGLSSLE 448

Query: 580 TLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
            L +  N+F  +    I   L +L  L+L   +L  + PT+F + S L+ L++  N+L  
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK- 507

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFP 666
           S+P  I +R + L  + L +N +    P
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  162 bits (411), Expect = 4e-42
 Identities = 109/514 (21%), Positives = 175/514 (34%), Gaps = 59/514 (11%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           S K L LSF  L H    S  +F  L  LDLS  + Q        +L+ L  L L  N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
            S  LG  S L+ L+ L   +  L   + +  + +L ++++L ++ N     K+P  F  
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
           L  L    ++S K+                                L         L+  
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT----------------------DLRVLHQMPLLNLSLD-- 183

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL------VSFLANAN 428
            LS N M+  I     +   L  L L NN  +  V +     L  L      +    N  
Sbjct: 184 -LSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241

Query: 429 SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL---DISSTRISDKIPRA 485
           +L             LT+ E R  +L       + L   L ++    + S  I      +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIF-----------DLSNN 534
           +         +N    Q     P     S+  +   S   G+ F           DLS N
Sbjct: 302 YNFGWQHLELVNCKFGQF----PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357

Query: 535 ALSGSIFHLICQGENFSK--NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL 592
            LS       C  ++     ++++L LS N     +   ++   +L  L+  ++N     
Sbjct: 358 GLS----FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

Query: 593 PMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRL 651
             S+  +L +L  L++ +          F   S LE L +  N    +    I      L
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472

Query: 652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
             L L   +     P     L+SLQ+L++A N L
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  160 bits (406), Expect = 2e-41
 Identities = 108/544 (19%), Positives = 189/544 (34%), Gaps = 73/544 (13%)

Query: 86  NPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQ 145
           + S      L  LDLS  + Q I+      SL +L  L L+      +       LS+LQ
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 146 YLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE 205
            L        L +     +  L  L+ L ++   +          ++L +L+ L LS  +
Sbjct: 104 KLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSSNK 160

Query: 206 LHHFPLLSSANFSSLT----TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVL-G 260
           +             +     +LDLS N     I         L  L L +N  +  V+  
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 261 WLSKLNDLEVLSLEDNRLQG-----DISSLGLDNLTS--IQKLLLSWNDELGGKIPTSFG 313
            +  L  LEV  L     +            L+ L +  I++  L++ D     I   F 
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373
            L  ++SFS+ S  + +       +      +  + L L  C+     T +L   KRL  
Sbjct: 280 CLTNVSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT- 331

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNG-TVSEIHFVNLTKLVSFLANANSLIF 432
              ++N+   +       + +LE LDLS N L+            T              
Sbjct: 332 --FTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS------------- 374

Query: 433 KINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQ 492
                      L  L+L    +      +L L ++L  LD   + +      + + S+  
Sbjct: 375 -----------LKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 493 YYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSK 552
             YL++S            + +       SL    +  ++ N+   +        + F++
Sbjct: 423 LIYLDISHTHTR------VAFNGIFNGLSSL---EVLKMAGNSFQENF-----LPDIFTE 468

Query: 553 --NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRN 609
             N+ FL LS     +  P  + +   L+ LN+ +N    S+P  I   LTSL+ + L  
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHT 527

Query: 610 NRLS 613
           N   
Sbjct: 528 NPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 5e-26
 Identities = 70/357 (19%), Positives = 113/357 (31%), Gaps = 34/357 (9%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARF------TGMIPHQ 137
            I P   +   L  L L  N      +   +  L  L    L    F             
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 138 LGNLSNLQYLDLSGVYFELHAETIS------------WLSGLSLLEHLYISF------VN 179
           L  L NL   +    Y + + + I              L  +++      S+      + 
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310

Query: 180 LSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ--FQGQIPSR 237
           L            L SLK L  +  +  +    S  +  SL  LDLS N   F+G     
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
               TSLK+LDL  N   + +      L  LE L  + + L+         +L ++  L 
Sbjct: 369 DFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427

Query: 298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI 357
           +S            F  L  L    MA     ++      IF+      L  L L  CQ+
Sbjct: 428 ISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELRN--LTFLDLSQCQL 482

Query: 358 FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHF 414
                        L  L +++NQ+         ++ +L+ + L  N  + +   I +
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  109 bits (274), Expect = 6e-25
 Identities = 88/422 (20%), Positives = 138/422 (32%), Gaps = 58/422 (13%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQ--------------------------IPKYLASL 117
           K+      L +L HLDLS N  Q I                           I       
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 118 VNLRYLNLSQARFTG-MIPHQLGNLSNLQYLDLSGVYFE----LHAETISWLSGLSLL-- 170
           + L  L L     +  ++   +  L+ L+   L    F     L     S L GL  L  
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQF 230
           E   +++++     D + + N L ++    L    +        +       L+L   +F
Sbjct: 260 EEFRLAYLDYY-LDDIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKF 316

Query: 231 QGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG-DISSLGLDN 289
             Q P+    L SLK L   SN+  +        L  LE L L  N L      S     
Sbjct: 317 G-QFPT--LKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 290 LTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELES 349
            TS++ L LS+N  +   + ++F  L +L       + L + +SE   +F       L  
Sbjct: 372 TTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNL-KQMSE-FSVFLSLR--NLIY 425

Query: 350 LYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSI-PLSLGQMANLESLDLSNNKLNGT 408
           L +                  L  L ++ N    +  P    ++ NL  LDLS  +L   
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-Q 484

Query: 409 VSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVLELR------SCHLGPRFPLW 461
           +S   F +L+ L      +N L   +          L  + L       SC        W
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543

Query: 462 LQ 463
           L 
Sbjct: 544 LN 545

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (260), Expect = 4e-23
 Identities = 100/614 (16%), Positives = 178/614 (28%), Gaps = 159/614 (25%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
            T       F  +IP  L    S K+LDL  N              +L+VL L    +Q 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65

Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFS 340
            I      +L+ +  L+L+ N                + S ++                 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGN---------------PIQSLAL----------------- 93

Query: 341 GCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDL 400
                            F  L++       L  L      +       +G +  L+ L++
Sbjct: 94  ---------------GAFSGLSS-------LQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
           ++N +       +F NLT L     ++N +        +    L VL             
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI------QSIYCTDLRVLH------------ 173

Query: 461 WLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIIT 520
             Q+      LD+S   ++   P AF         L +  N     V K     +  +  
Sbjct: 174 --QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK--LTLRNNFDSLNVMKTCIQGLAGLEV 229

Query: 521 PSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRT 580
             L+LG   +  N                        K   +   EG+ +  +   RL  
Sbjct: 230 HRLVLGEFRNEGN----------------------LEKFDKSAL-EGLCNLTIEEFRLAY 266

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSI 640
           L+   ++           LT++ S +L +  +  V   S+      + L++   +  G  
Sbjct: 267 LDYYLDDIIDLFNC----LTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKF-GQF 319

Query: 641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA 700
           PT    +   L  L   SNK    F      L SL+ LD++ N L      C  +     
Sbjct: 320 PTL---KLKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGL-SFKGCCSQSDFG-- 371

Query: 701 TADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVE 760
                                                     ++ +D+S N     +   
Sbjct: 372 ---------------------------------------TTSLKYLDLSFNGVI-TMSSN 391

Query: 761 VTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 819
              L+ L+ L+  H+        ++   +R++  LD S            + LS L  L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 820 LSNNNLNGEIPSST 833
           ++ N+         
Sbjct: 452 MAGNSFQENFLPDI 465

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 74.8 bits (184), Expect = 5e-14
 Identities = 57/274 (20%), Positives = 92/274 (33%), Gaps = 39/274 (14%)

Query: 580 TLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS 639
           T      NF   +P ++    S ++L+L  N L  +   SF +F  L+ LD+   E+  +
Sbjct: 11  TYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QT 66

Query: 640 IPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAM 699
           I     +  S L  LIL  N            L+SLQ L     +L       I +   +
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 700 ATADSSD---QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE 756
              + +    QS  +   FS                       L  +  +D+S N     
Sbjct: 127 KELNVAHNLIQSFKLPEYFSN----------------------LTNLEHLDLSSNKIQSI 164

Query: 757 IPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM-SN 811
              ++  L  +     SL+LS N     I         +  L    N  S  + ++    
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 812 LSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAG 845
           L+ L    L       E  +   L+ FD S+  G
Sbjct: 224 LAGLEVHRLVLG----EFRNEGNLEKFDKSALEG 253

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  155 bits (393), Expect = 5e-40
 Identities = 89/544 (16%), Positives = 175/544 (32%), Gaps = 66/544 (12%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
            +  LDLS N    I     L +  NL+ L L  +R   +      +L +L++LDLS   
Sbjct: 27  AMKSLDLSFNKITYIG-HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN- 84

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC-ELHHFPLL 212
             L + + SW   LS L++L +          + L   +L +L+ L++           +
Sbjct: 85  -HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL-FPNLTNLQTLRIGNVETFSEIRRI 142

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
             A  +SL  L++     +      L ++  + HL L+ ++    +  +   L+ +  L 
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDI 332
           L D  L           +  +   +             SF +L KL  + +  +++    
Sbjct: 203 LRDTNLAR--FQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE--- 257

Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
                 F  C    L         +   L     +   +  L +    +   +      +
Sbjct: 258 ------FDDCTLNGLGDFNPSESDVVSELGKV--ETVTIRRLHIPQFYLFYDLSTVYSLL 309

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
             ++ + + N+K+   V      +L  L     + N ++ +   N               
Sbjct: 310 EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP------- 361

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISD--KIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
                          L  L +S   +    K              L++S N  +      
Sbjct: 362 --------------SLQTLVLSQNHLRSMQKTGEILLTLK-NLTSLDISRNTFHPMPDSC 406

Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPD 570
             P         +      +LS+  +   +   I Q       +E L +S N+       
Sbjct: 407 QWP-------EKMR---FLNLSSTGIR-VVKTCIPQ------TLEVLDVSNNNLDS-FS- 447

Query: 571 CWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630
             +  PRL+ L +  N    +LP        L  + +  N+L  V    F   + L+ + 
Sbjct: 448 --LFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 631 VGEN 634
           +  N
Sbjct: 504 LHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  146 bits (370), Expect = 4e-37
 Identities = 98/511 (19%), Positives = 182/511 (35%), Gaps = 48/511 (9%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           ++K L LSF ++ +         ++L  L L  ++          +L SL+HLDL  N  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
           +S    W   L+ L+ L+L  N  Q    +    NLT++Q L +   +         F  
Sbjct: 87  SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG 146

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
           L  L    + +  L    S+ L         ++  L L   +    L         + +L
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSI-----RDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL---- 430
            L +  +       L        +     + +  +++  F  L KL+ ++   + +    
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFDD 260

Query: 431 -----IFKINPNWVPPFQ---------LTVLELRSCHLGPRFPLWLQLQKKLNDLDISST 476
                +   NP+               +  L +   +L         L +K+  + + ++
Sbjct: 261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320

Query: 477 RISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNAL 536
           ++   +P +F   +    +L++S N +     K    S      PSL       LS N L
Sbjct: 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLK---NSACKGAWPSL---QTLVLSQNHL 373

Query: 537 SGSIFHLICQGENFSK--NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPM 594
                 +   GE      N+  L +S N F   +PD      ++R LNL +      +  
Sbjct: 374 R----SMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKT 427

Query: 595 SIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMIL 654
            I    +L  L++ NN L             L+ L +  N+L  ++P      F  L+++
Sbjct: 428 CI--PQTLEVLDVSNNNLD-SFSLFLPR---LQELYISRNKLK-TLPD--ASLFPVLLVM 478

Query: 655 ILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
            +  N+          RL SLQ + +  N  
Sbjct: 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  145 bits (368), Expect = 9e-37
 Identities = 98/527 (18%), Positives = 181/527 (34%), Gaps = 64/527 (12%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
            L    +L  L L  +    I+      SL +L +L+LS    + +     G LS+L+YL
Sbjct: 45  DLRACANLQVLILKSSRINTIE-GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
           +L G  ++      S    L+ L+ L I  V         +    L SL EL++    L 
Sbjct: 104 NLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEIRR-IDFAGLTSLNELEIKALSLR 161

Query: 208 HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLND 267
           ++   S  +   +  L L  ++    +      L+S+++L+L            L     
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221

Query: 268 LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTK 327
              +     R    ++    + L  + + +L  ++     +      L  L  F+ + + 
Sbjct: 222 SSPMKKLAFRGS-VLTDESFNELLKLLRYILELSE-----VEFDDCTLNGLGDFNPSESD 275

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
           +  ++ ++  +        +  L++    +F  L+      +++  + + N+++      
Sbjct: 276 VVSELGKVETV-------TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447
               + +LE LDLS N +                      NS      P+      L  L
Sbjct: 329 FSQHLKSLEFLDLSENLM----------------VEEYLKNSACKGAWPS------LQTL 366

Query: 448 ELRSCHLG--PRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYG 505
            L   HL    +    L   K L  LDIS            W    +  +LN+S   I  
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSSTGI-- 422

Query: 506 GVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565
                    +   I  +L    + D+SNN L      L          ++ L +S N   
Sbjct: 423 -------RVVKTCIPQTL---EVLDVSNNNLDSFSLFL--------PRLQELYISRNKLK 464

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
             +PD    +P L  + +  N            LTSL+ + L  N  
Sbjct: 465 T-LPDAS-LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (355), Expect = 4e-35
 Identities = 94/504 (18%), Positives = 179/504 (35%), Gaps = 49/504 (9%)

Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
                    P   S   +++ +LDLS N+        L    +L+ L L S++ N+    
Sbjct: 12  GRSRSFTSIP---SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS 320
               L  LE L L DN L   +SS     L+S++ L L  N      + + F  L  L +
Sbjct: 69  AFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 321 FSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQ 380
             + + +   +I      F+G  +  L  L ++   +  + +  L   + ++ L L  ++
Sbjct: 128 LRIGNVETFSEIRR--IDFAGLTS--LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 381 MDGSIPLSLGQMANLESLDLSNNKLNG-TVSEIHFVNLTKLVSFLANANSLIFKINPNWV 439
               + +    ++++  L+L +  L     S +    ++  +  LA   S++   + N +
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 440 PPFQLTVLELRSCHL------------GPRFPLWLQLQK----KLNDLDISSTRISDKIP 483
                 +LEL                      +  +L K     +  L I    +   + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHL 543
             +     +   + V  ++++  VP   S  +  +           DLS N +       
Sbjct: 304 TVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEF--------LDLSENLMVEEYLKN 353

Query: 544 ICQGENFSKNIEFLKLSTNHFS--EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS 601
               +    +++ L LS NH    +   +  +    L +L++  N F   +P S      
Sbjct: 354 -SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 602 LRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF 661
           +R LNL +  +  V     +    LE LDV  N L             RL  L +  NK 
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNL-----DSFSLFLPRLQELYISRNKL 463

Query: 662 HGDFPIQLCRLASLQILDVAYNSL 685
                  L     L ++ ++ N L
Sbjct: 464 KTLPDASL--FPVLLVMKISRNQL 485

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  113 bits (284), Expect = 3e-26
 Identities = 66/379 (17%), Positives = 121/379 (31%), Gaps = 46/379 (12%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
               L  L  L++     +  Q  + L S+ ++ +L L  +    ++      LS+++YL
Sbjct: 143 DFAGLTSLNELEIKALSLRNYQ-SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYL 201

Query: 148 DLSGVYF-ELHAETISWLSGLSLLEHLY--------ISFVNLSKASDSLLVINSLHSL-- 196
           +L            +      S ++ L          SF  L K    +L ++ +     
Sbjct: 202 ELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC 261

Query: 197 ---KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
                   +  E      L      ++  L +        + +    L  +K + + +++
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQ--GDISSLGLDNLTSIQKLLLSWN--DELGGKIP 309
                  +   L  LE L L +N +      +S       S+Q L+LS N    +  K  
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM-QKTG 380

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI-------FGHLT 362
                L  LTS  ++                      +  L L    I          L 
Sbjct: 381 EILLTLKNLTSLDISRNTFHPMPDSCQWPEK------MRFLNLSSTGIRVVKTCIPQTLE 434

Query: 363 ------NQLGQF----KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEI 412
                 N L  F     RL  L +S N++  ++P        L  + +S N+L  +V + 
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLP-DASLFPVLLVMKISRNQLK-SVPDG 491

Query: 413 HFVNLTKLVSFLANANSLI 431
            F  LT L     + N   
Sbjct: 492 IFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  111 bits (280), Expect = 1e-25
 Identities = 90/506 (17%), Positives = 159/506 (31%), Gaps = 90/506 (17%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L  L +L+L GN +Q + +     +L NL+ L +        I                 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID------------- 143

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                        +GL+ L  L I  ++L         + S+  +  L L   E      
Sbjct: 144 ------------FAGLTSLNELEIKALSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLE 189

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
           + +   SS+  L+L          S L        +   + + +   L   S    L++L
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV--LTDESFNELLKLL 247

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
                  + +     L+ L            EL         +   +    +    L  D
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSEL------GKVETVTIRRLHIPQFYLFYD 301

Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM---DGSIPLS 388
           +S +  +       +++ + +   ++F    +     K L FL LS N M          
Sbjct: 302 LSTVYSLLE-----KVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC 356

Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLE 448
            G   +L++L LS N L          ++ K    L    +              LT L+
Sbjct: 357 KGAWPSLQTLVLSQNHLR---------SMQKTGEILLTLKN--------------LTSLD 393

Query: 449 LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVP 508
           +         P   Q  +K+  L++SST I   +      ++     L+VS N +     
Sbjct: 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTL---EVLDVSNNNL----- 443

Query: 509 KFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI 568
             DS S+ L   P L       +S N L      L     +    +  +K+S N      
Sbjct: 444 --DSFSLFL---PRL---QELYISRNKLK----TL--PDASLFPVLLVMKISRNQLKSVP 489

Query: 569 PDCWMNWPRLRTLNLGNNNFTGSLPM 594
              +     L+ + L  N +  S P 
Sbjct: 490 DGIFDRLTSLQKIWLHTNPWDCSCPR 515

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.8 bits (223), Expect = 1e-18
 Identities = 70/506 (13%), Positives = 156/506 (30%), Gaps = 107/506 (21%)

Query: 347 LESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLD 399
           L+ L L+  +I       F  L +       L  L LS+N +        G +++L+ L+
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGS-------LEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104

Query: 400 LSNNKLNGTVSEIHFVNLTKLVS-FLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRF 458
           L  N          F NLT L +  + N  +       ++     L  LE+++  L    
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQ 164

Query: 459 PLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI 518
              L+  + ++ L +  +  +  +   F + +    YL +    +            PL 
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLAR------FQFSPLP 217

Query: 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRL 578
           +              + L+   F+ + +   +   +  ++                    
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTL-------------N 264

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
              +   +       +      ++R L++    L   + T +     ++ + V  ++   
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--- 321

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698
                         + ++  +            L SL+ LD++ N +             
Sbjct: 322 --------------VFLVPCSFSQH--------LKSLEFLDLSENLM------------- 346

Query: 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS--GE 756
                                         +K            ++++ +S N+     +
Sbjct: 347 --------------------------VEEYLKNSAC--KGAWPSLQTLVLSQNHLRSMQK 378

Query: 757 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 816
               +  L+ L SL++S N F   +PD+      +  L+ S+  +   +         L 
Sbjct: 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTC--IPQTLE 434

Query: 817 YLNLSNNNLNGEIPSSTQLQSFDASS 842
            L++SNNNL+       +LQ    S 
Sbjct: 435 VLDVSNNNLDSFSLFLPRLQELYISR 460

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 5e-18
 Identities = 50/355 (14%), Positives = 112/355 (31%), Gaps = 54/355 (15%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
           D  + + + SI          +  ++ L LS N  +            L+ L L ++   
Sbjct: 11  DGRSRSFT-SIP------SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGV-------------------------IPTSFKNFS 624
                +  +L SL  L+L +N LS +                         + + F N +
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 625 ILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684
            L+ L +G  E    I        + L  L +++          L  +  +  L +  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 685 LLGTIPRCINNFSA--------------MATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730
               +    +  S+                +    D+ S  +   +    ++ D S    
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQG--------LQSLNLSHNLFTGRIP 782
             L+ Y   L+ V   D ++N      P E   +          ++ L++        + 
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 837
               ++  ++ +    +++         +L  L +L+LS N +  E   ++  + 
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 1e-17
 Identities = 51/327 (15%), Positives = 110/327 (33%), Gaps = 23/327 (7%)

Query: 514 SMPLIITPSLLLGSIFDLSNNALS----GSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
           S+P  +T ++      DLS N ++    G +            N++ L L ++  +    
Sbjct: 19  SIPSGLTAAM---KSLDLSFNKITYIGHGDLRAC--------ANLQVLILKSSRINTIEG 67

Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGV-IPTSFKNFSILEA 628
           D + +   L  L+L +N+ +       G L+SL+ LNL  N    + + + F N + L+ 
Sbjct: 68  DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127

Query: 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT 688
           L +G  E    I        + L  L +++          L  +  +  L +  +     
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 689 IPRCINNFSAMATADSSDQSSDIL--YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSI 746
           +    +  S++   +  D +           D        L  +G ++   S   L++ +
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247

Query: 747 DISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 806
              +     E      +       + + +              +I  L      L   + 
Sbjct: 248 RYILELSEVEF----DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303

Query: 807 QSMSNLSFLNYLNLSNNNLNGEIPSST 833
              S L  +  + + N+ +   +P S 
Sbjct: 304 TVYSLLEKVKRITVENSKVF-LVPCSF 329

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  142 bits (361), Expect = 2e-37
 Identities = 84/351 (23%), Positives = 141/351 (40%), Gaps = 50/351 (14%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +  EL+ +  L ++G     I   + +  L NL YLNL+  + T + P  L NL  L  
Sbjct: 38  VTQEELESITKLVVAGEKVASI---QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN 92

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L +           IS L  L+ L  LY++  N+S  S     + +L  +  L L     
Sbjct: 93  LYIGTNKI----TDISALQNLTNLRELYLNEDNISDISP----LANLTKMYSLNLGANHN 144

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                   +N + L  L ++ ++ +   P  + NLT L  L L  NQ     +  L+ L 
Sbjct: 145 LSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED--ISPLASLT 199

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI--PTSFGKLCKLTSFSMA 324
            L   +   N++  DI+ +   N+T +  L +  N     KI   +    L +LT   + 
Sbjct: 200 SLHYFTAYVNQIT-DITPVA--NMTRLNSLKIGNN-----KITDLSPLANLSQLTWLEIG 251

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQI-----FGHLTNQLGQFKRLNFLGLSNN 379
           + ++S DI+             L+ L +   QI       +L+        LN L L+NN
Sbjct: 252 TNQIS-DINA----VKDLTK--LKMLNVGSNQISDISVLNNLSQ-------LNSLFLNNN 297

Query: 380 QMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
           Q+       +G + NL +L LS N +          +L+K+ S       +
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNHIT---DIRPLASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (318), Expect = 1e-31
 Identities = 78/421 (18%), Positives = 146/421 (34%), Gaps = 79/421 (18%)

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
              L      ++   +   A+ +      L        +      L S+  L +   +  
Sbjct: 2   AATLATLPAPINQ--IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 256 SAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL 315
           S  +  +  L +LE L+L  N++  DIS L   NL  +  L +  N        ++   L
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQIT-DISPLS--NLVKLTNLYIGTN---KITDISALQNL 109

Query: 316 CKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLG 375
             L    +    +S DIS +  +        + SL L        L+  L     LN+L 
Sbjct: 110 TNLRELYLNEDNIS-DISPLANLTK------MYSLNLGANHNLSDLSP-LSNMTGLNYLT 161

Query: 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKIN 435
           ++ +++    P+    + +L SL L+ N++          +LT L  F A  N       
Sbjct: 162 VTESKVKDVTPI--ANLTDLYSLSLNYNQIE---DISPLASLTSLHYFTAYVN------- 209

Query: 436 PNWVPPFQLTVLE-LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY 494
                  Q+T +  + +               +LN L I + +I+D  P     ++ Q  
Sbjct: 210 -------QITDITPVANM-------------TRLNSLKIGNNKITDLSP---LANLSQLT 246

Query: 495 YLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSG--SIFHLICQGENFSK 552
           +L +  NQI   +               L    + ++ +N +S    + +L         
Sbjct: 247 WLEIGTNQI-SDINAVKD-------LTKL---KMLNVGSNQISDISVLNNL--------S 287

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
            +  L L+ N       +       L TL L  N+ T   P  + +L+ + S +  N  +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

Query: 613 S 613
            
Sbjct: 346 K 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  124 bits (314), Expect = 3e-31
 Identities = 82/385 (21%), Positives = 163/385 (42%), Gaps = 40/385 (10%)

Query: 95  LVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF 154
              L         I      A L       L +A  T ++      L ++  L ++G   
Sbjct: 2   AATLATLPAPINQI---FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAG--- 53

Query: 155 ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSS 214
                +I  +  L+ LE+L ++   ++     +  +++L  L  L +   ++     L  
Sbjct: 54  -EKVASIQGIEYLTNLEYLNLNGNQIT----DISPLSNLVKLTNLYIGTNKITDISALQ- 107

Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
            N ++L  L L+ +      P  L NLT +  L+L +N  N + L  LS +  L  L++ 
Sbjct: 108 -NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVT 163

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
           +++++ D++ +   NLT +  L L++N ++    P     L  L  F+    +++ DI+ 
Sbjct: 164 ESKVK-DVTPIA--NLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQIT-DITP 216

Query: 335 ILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMAN 394
           +  +        L SL +   +I     + L    +L +L +  NQ+   I  ++  +  
Sbjct: 217 VANMTR------LNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQIS-DIN-AVKDLTK 266

Query: 395 LESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL 454
           L+ L++ +N+++  +S ++  NL++L S   N N L  +          LT L L   H+
Sbjct: 267 LKMLNVGSNQISD-ISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 455 GPRFPLWLQLQKKLNDLDISSTRIS 479
               PL   L  K++  D ++  I 
Sbjct: 324 TDIRPLA-SL-SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 7e-20
 Identities = 66/362 (18%), Positives = 141/362 (38%), Gaps = 62/362 (17%)

Query: 466 KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLL 525
           + +  L ++  +++      +  ++    YLN++GNQI        +   PL     L  
Sbjct: 44  ESITKLVVAGEKVASIQGIEYLTNLE---YLNLNGNQI--------TDISPLSNLVKL-- 90

Query: 526 GSIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNL 583
            +   +  N ++   ++ +L         N+  L L+ ++ S+  P    N  ++ +LNL
Sbjct: 91  -TNLYIGTNKITDISALQNL--------TNLRELYLNEDNISDISPLA--NLTKMYSLNL 139

Query: 584 GNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTW 643
           G N+   S    +  +T L  L +  +++  V P    N + L +L +  N++    P  
Sbjct: 140 GANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL- 195

Query: 644 IGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATAD 703
                + L       N+        +  +  L  L +  N +    P  + N S +    
Sbjct: 196 --ASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTW-- 247

Query: 704 SSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN 763
                   L    G N+I +  ++            L  ++ +++  N  S    +   N
Sbjct: 248 --------LEI--GTNQISDINAV----------KDLTKLKMLNVGSNQISDISVLN--N 285

Query: 764 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 823
           L  L SL L++N       + IG + ++ +L  S N ++   P  +++LS ++  + +N 
Sbjct: 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

Query: 824 NL 825
            +
Sbjct: 344 VI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.1 bits (227), Expect = 8e-20
 Identities = 78/403 (19%), Positives = 144/403 (35%), Gaps = 66/403 (16%)

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
              L      +   FP    L  +     +    ++D + +    SI     L V+G ++
Sbjct: 2   AATLATLPAPINQIFPD-ADL-AEGIRAVLQKASVTDVVTQEELESI---TKLVVAGEKV 56

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLST 561
              +   +          +L      +L+ N ++    + +L          +  L + T
Sbjct: 57  -ASIQGIEYL-------TNL---EYLNLNGNQITDISPLSNL--------VKLTNLYIGT 97

Query: 562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK 621
           N  +        N   LR L L  +N +   P  +  LT + SLNL  N     +     
Sbjct: 98  NKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLS 152

Query: 622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVA 681
           N + L  L V E+++    P       + L  L L  N+        L  L SL      
Sbjct: 153 NMTGLNYLTVTESKVKDVTPI---ANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAY 207

Query: 682 YNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILN 741
            N +    P  + N + +          + L    G+NKI + + L          + L+
Sbjct: 208 VNQITDITP--VANMTRL----------NSLKI--GNNKITDLSPL----------ANLS 243

Query: 742 LVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801
            +  ++I  N  S      V +L  L+ LN+  N  +      +  +  + SL  + NQL
Sbjct: 244 QLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQL 299

Query: 802 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFDASS 842
             +  + +  L+ L  L LS N++    P +  +++ S D ++
Sbjct: 300 GNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.5 bits (210), Expect = 1e-17
 Identities = 77/431 (17%), Positives = 143/431 (33%), Gaps = 91/431 (21%)

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFK 433
           L      ++   P +   +A      L    +   V++    ++TKLV     A   +  
Sbjct: 5   LATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVTQEELESITKLVV----AGEKVAS 58

Query: 434 INPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQY 493
           I         L  L L    +    PL   L  KL +L I + +I+D I      ++   
Sbjct: 59  IQGIEYLT-NLEYLNLNGNQITDISPL-SNL-VKLTNLYIGTNKITD-IS--ALQNLTNL 112

Query: 494 YYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS-- 551
             L ++ + I        S   PL     +      +L  N     +          S  
Sbjct: 113 RELYLNEDNI--------SDISPLANLTKM---YSLNLGANHNLSDL-------SPLSNM 154

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
             + +L ++ +   +  P    N   L +L+L  N      P  + +LTSL       N+
Sbjct: 155 TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210

Query: 612 LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR 671
           ++ + P    N + L +L +G N++    P       S+L  L + +N+        +  
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQISD--INAVKD 263

Query: 672 LASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731
           L  L++L+V  N +       I+  + +                         + L    
Sbjct: 264 LTKLKMLNVGSNQI-----SDISVLNNL-------------------------SQL---- 289

Query: 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791
                        S+ ++ N    E    +  L  L +L LS N  T   P  +  +  +
Sbjct: 290 ------------NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335

Query: 792 ESLDFSANQLS 802
           +S DF+   + 
Sbjct: 336 DSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 7e-08
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 7/96 (7%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            ++ +L  L  L++  N    I +   L +L  L  L L+  +        +G L+NL  
Sbjct: 259 NAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSK 182
           L LS  +       I  L+ LS ++    +   + K
Sbjct: 316 LFLSQNHIT----DIRPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  142 bits (359), Expect = 5e-36
 Identities = 98/421 (23%), Positives = 168/421 (39%), Gaps = 52/421 (12%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            S  +L  +  L        GI+    +  L NL  +N S  + T + P  L NL+ L  
Sbjct: 40  VSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVD 94

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           + ++          I+ L+ L+ L  L +    ++     +  + +L +L  L+LS   +
Sbjct: 95  ILMNNNQI----ADITPLANLTNLTGLTLFNNQIT----DIDPLKNLTNLNRLELSSNTI 146

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                LS    +SL  L    NQ     P  L NLT+L+ LD+ SN+ +   +  L+KL 
Sbjct: 147 SDISALS--GLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLT 199

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
           +LE L   +N++  DI+ LG   LT++ +L L+ N     K   +   L  LT   +A+ 
Sbjct: 200 NLESLIATNNQIS-DITPLG--ILTNLDELSLNGNQ---LKDIGTLASLTNLTDLDLANN 253

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
           ++S +++ + G+        L  L L   QI     + L     L  L L+ NQ++   P
Sbjct: 254 QIS-NLAPLSGLTK------LTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISP 304

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF---- 442
             +  + NL  L L  N ++         +LTKL       N +      + V       
Sbjct: 305 --ISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFYNNKV------SDVSSLANLT 353

Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
            +  L      +    P  L    ++  L ++    ++       N        NV+G  
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

Query: 503 I 503
           I
Sbjct: 412 I 412

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (349), Expect = 8e-35
 Identities = 100/421 (23%), Positives = 172/421 (40%), Gaps = 53/421 (12%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
             +  L +L  ++ S N    I     L +L  L  + ++  +   + P  L NL+NL  
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L L           I  L  L+ L  L +S   +S  S     ++ L SL++L       
Sbjct: 117 LTLFNNQI----TDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFGNQVT 168

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
              PL   AN ++L  LD+S N+      S L  LT+L+ L   +NQ +   +  L  L 
Sbjct: 169 DLKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD--ITPLGILT 221

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
           +L+ LSL  N+L+ DI +L   +LT++  L L+ N ++    P     L KLT   + + 
Sbjct: 222 NLDELSLNGNQLK-DIGTLA--SLTNLTDLDLANN-QISNLAP--LSGLTKLTELKLGAN 275

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
           ++S +IS + G+ +      L +L L   Q+     + +   K L +L L  N +    P
Sbjct: 276 QIS-NISPLAGLTA------LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP 326

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF---- 442
           +S   +  L+ L   NNK++   S     NLT +    A  N +      + + P     
Sbjct: 327 VS--SLTKLQRLFFYNNKVSDVSS---LANLTNINWLSAGHNQI------SDLTPLANLT 375

Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
           ++T L L            +  +  ++  +         I  A  +    Y   +++ N 
Sbjct: 376 RITQLGLNDQAW---TNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNL 432

Query: 503 I 503
            
Sbjct: 433 P 433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  135 bits (341), Expect = 9e-34
 Identities = 96/488 (19%), Positives = 176/488 (36%), Gaps = 87/488 (17%)

Query: 161 ISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSL 220
           I   + L+      +   N++      +    L  +  L+     +     +     ++L
Sbjct: 17  IFTDTALAEKMKTVLGKTNVT----DTVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNL 70

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
           T ++ S NQ     P  L NLT L  + + +NQ     +  L+ L +L  L+L +N++  
Sbjct: 71  TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQIT- 125

Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKI--PTSFGKLCKLTSFSMASTKLSQDISEILGI 338
           DI  L   NLT++ +L LS N      I   ++   L  L   S         ++++  +
Sbjct: 126 DIDPLK--NLTNLNRLELSSN-----TISDISALSGLTSLQQLS-----FGNQVTDLKPL 173

Query: 339 FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL 398
            +      LE L +   ++   ++  L +   L  L  +NNQ+    PL  G + NL+ L
Sbjct: 174 -ANLTT--LERLDISSNKV-SDISV-LAKLTNLESLIATNNQISDITPL--GILTNLDEL 226

Query: 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRF 458
            L+ N+L    +     +LT L       N              Q++ L           
Sbjct: 227 SLNGNQLKDIGT---LASLTNLTDLDLANN--------------QISNLA---------- 259

Query: 459 PLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI 518
              L    KL +L + + +IS+  P A   ++     L ++ NQ+            P+ 
Sbjct: 260 --PLSGLTKLTELKLGANQISNISPLAGLTAL---TNLELNENQLED--------ISPIS 306

Query: 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRL 578
              +L   +   L  N +S           +    ++ L    N  S+       N   +
Sbjct: 307 NLKNL---TYLTLYFNNISDIS------PVSSLTKLQRLFFYNNKVSD--VSSLANLTNI 355

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
             L+ G+N  +   P  +  LT +  L L +   +        N SI   +      L+ 
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI- 412

Query: 639 SIPTWIGE 646
             P  I +
Sbjct: 413 -APATISD 419

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  133 bits (337), Expect = 3e-33
 Identities = 97/514 (18%), Positives = 180/514 (35%), Gaps = 71/514 (13%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +   L   +   L   +            L  +  L   +     +    +  L+NL  
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDT---VSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           ++ S          I+ L  L+ L  + ++   ++  +     + +L +L  L L   ++
Sbjct: 73  INFSNNQL----TDITPLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQI 124

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                L   N ++L  L+LS N       S L  LTSL+ L   +   +   L  L+   
Sbjct: 125 TDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTT-- 178

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
            LE L +  N++  DIS L    LT+++ L+ + N ++    P   G L  L   S+   
Sbjct: 179 -LERLDISSNKVS-DISVLA--KLTNLESLIATNN-QISDITP--LGILTNLDELSLNGN 231

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
           +L       +G  +      L  L L   QI       L    +L  L L  NQ+    P
Sbjct: 232 QLKD-----IGTLASLTN--LTDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP 282

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF---- 442
           L+   +  L +L+L+ N+L          NL  L       N++      + + P     
Sbjct: 283 LA--GLTALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNI------SDISPVSSLT 331

Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
           +L  L   +  +       L     +N L     +ISD  P A    I     L ++   
Sbjct: 332 KLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTPLANLTRIT---QLGLNDQA 386

Query: 503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN 562
                      + P+    ++ + +       AL       I  G ++++      ++ N
Sbjct: 387 WT---------NAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGGSYTE----PDITWN 431

Query: 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI 596
             S    +    + +  T+  G   F+G++   +
Sbjct: 432 LPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  113 bits (286), Expect = 1e-26
 Identities = 101/590 (17%), Positives = 192/590 (32%), Gaps = 128/590 (21%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
            L +  ++ +    QI +    L       L        V    + L+ +  L  +   +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 279 QGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGI 338
           +  I   G++ L ++ ++  S N +L    P     L KL    M + +++ DI+ +  +
Sbjct: 59  K-SID--GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNNQIA-DITPLANL 111

Query: 339 FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL 398
            +      L  L L   QI     + L     LN L LS+N +  S   +L  + +L+ L
Sbjct: 112 TN------LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQL 161

Query: 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRF 458
              N   +         NLT L     ++N              +++ + +         
Sbjct: 162 SFGNQVTD----LKPLANLTTLERLDISSN--------------KVSDISV--------- 194

Query: 459 PLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI 518
              L     L  L  ++ +ISD  P     ++     L+++GNQ+               
Sbjct: 195 ---LAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQLKD------------- 235

Query: 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRL 578
                 +G++  L                     N+  L L+ N  S   P       +L
Sbjct: 236 ------IGTLASL--------------------TNLTDLDLANNQISNLAPLS--GLTKL 267

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
             L LG N  +   P  +  LT+L +L L  N+L  + P    N   L  L +  N +  
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698
             P       ++L  L   +NK        L  L ++  L   +N +    P  + N + 
Sbjct: 324 ISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 376

Query: 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP 758
           +            L     D               V Y + +++  ++           P
Sbjct: 377 ITQ----------LGL--NDQAW--------TNAPVNYKANVSIPNTVKNVTGALI--AP 414

Query: 759 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 808
             +++       +++ NL +    +         ++       SG + Q 
Sbjct: 415 ATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTFSGTVTQP 463

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 99.7 bits (249), Expect = 5e-22
 Identities = 95/487 (19%), Positives = 171/487 (35%), Gaps = 83/487 (17%)

Query: 346 ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
           E     L    +   ++       ++  L              +  + NL  ++ SNN+L
Sbjct: 25  EKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG--IKSIDGVEYLNNLTQINFSNNQL 80

Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF----QLTVLELRSCHLGPRFPLW 461
                     NLTKLV  L N N +        + P      LT L L +  +       
Sbjct: 81  TDI---TPLKNLTKLVDILMNNNQI------ADITPLANLTNLTGLTLFNNQI--TDIDP 129

Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITP 521
           L+    LN L++SS  ISD    +   S+ Q        NQ+    P  +  ++      
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSL-QQLSFG---NQVTDLKPLANLTTL------ 179

Query: 522 SLLLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLR 579
                   D+S+N +S    +  L         N+E L  + N  S+  P        L 
Sbjct: 180 -----ERLDISSNKVSDISVLAKL--------TNLESLIATNNQISDITPLG--ILTNLD 224

Query: 580 TLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS 639
            L+L  N        ++ +LT+L  L+L NN++S + P      + L  L +G N++   
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 280

Query: 640 IPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAM 699
            P       + L  L L  N+        +  L +L  L + +N++    P  +++ + +
Sbjct: 281 SPL---AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKL 333

Query: 700 ATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPV 759
                 +            NK+ + +SL          + L  +  +    N  S   P+
Sbjct: 334 QRLFFYN------------NKVSDVSSL----------ANLTNINWLSAGHNQISDLTPL 371

Query: 760 EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 819
              NL  +  L L+   +T   P N     SI +   +        P ++S+       +
Sbjct: 372 A--NLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPD 427

Query: 820 LSNNNLN 826
           ++ N  +
Sbjct: 428 ITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 97.7 bits (244), Expect = 2e-21
 Identities = 90/486 (18%), Positives = 166/486 (34%), Gaps = 83/486 (17%)

Query: 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKIN 435
             +  ++     +   +A      L    +  TVS+     +T L      A+ L  K  
Sbjct: 9   TQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQTDLDQVTTL-----QADRLGIKSI 61

Query: 436 PNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYY 495
                   LT +   +  L    PL  +   KL D+ +++ +I+D  P A   ++     
Sbjct: 62  DGVEYLNNLTQINFSNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNL---TG 116

Query: 496 LNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSI--FDLSNNALSG--SIFHL-------- 543
           L +  NQI               I P   L ++   +LS+N +S   ++  L        
Sbjct: 117 LTLFNNQITD-------------IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163

Query: 544 ---ICQGENFS--KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGT 598
              +   +  +    +E L +S+N  S+           L +L   NN  +   P  +G 
Sbjct: 164 GNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGI 219

Query: 599 LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS 658
           LT+L  L+L  N+L  +   +  + + L  LD+  N++    P       ++L  L L +
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGA 274

Query: 659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGD 718
           N+     P+    L +L  L++  N L    P  I+N   +                   
Sbjct: 275 NQISNISPLA--GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF------------ 318

Query: 719 NKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFT 778
           N I + + +          S L  ++ +    N  S      + NL  +  L+  HN  +
Sbjct: 319 NNISDISPV----------SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQIS 366

Query: 779 GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL--NGEIPSSTQLQ 836
              P  +  +  I  L  +    +       +N+S  N +      L     I       
Sbjct: 367 DLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYT 424

Query: 837 SFDASS 842
             D + 
Sbjct: 425 EPDITW 430

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 57.7 bits (140), Expect = 1e-08
 Identities = 40/268 (14%), Positives = 85/268 (31%), Gaps = 63/268 (23%)

Query: 577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636
            L +  +  +     +  +   L       L    ++  +     +   +  L      +
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNF 696
                  + E  + L  +   +N+        L  L  L  + +  N +    P  + N 
Sbjct: 59  --KSIDGV-EYLNNLTQINFSNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANL 111

Query: 697 SAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE 756
           +                                           NL   + +  N  +  
Sbjct: 112 T-------------------------------------------NL-TGLTLFNNQITDI 127

Query: 757 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 816
            P++  NL  L  L LS N  +      +  + S++ L F  NQ++   P  ++NL+ L 
Sbjct: 128 DPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLE 180

Query: 817 YLNLSNNNLNG--EIPSSTQLQSFDASS 842
            L++S+N ++    +   T L+S  A++
Sbjct: 181 RLDISSNKVSDISVLAKLTNLESLIATN 208

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  124 bits (314), Expect = 3e-31
 Identities = 53/334 (15%), Positives = 114/334 (34%), Gaps = 29/334 (8%)

Query: 82  VGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNL 141
           +G  +          +L   G+          L+        + ++         +  N 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGS-TALRPYHDVLSQWQRHYNADRNRWHS----AWRQANS 55

Query: 142 SNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKL 201
           +N Q    +G   +  A+ +   +       L +  V L +  D       L  L+ + +
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGR-VALELRSVPLPQFPDQ---AFRLSHLQHMTI 111

Query: 202 SFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ-------- 253
               L   P  +   F+ L TL L+ N  +  +P+ + +L  L+ L + +          
Sbjct: 112 DAAGLMELPD-TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 254 -FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSF 312
             ++   G    L +L+ L LE   ++   +S+   NL +++ L +  +  L   +  + 
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNS-PLS-ALGPAI 225

Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L KL    +      ++   I G  +      L+ L L+ C     L   + +  +L 
Sbjct: 226 HHLPKLEELDLRGCTALRNYPPIFGGRA-----PLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
            L L        +P  + Q+     + +  +   
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  109 bits (274), Expect = 4e-26
 Identities = 60/352 (17%), Positives = 112/352 (31%), Gaps = 49/352 (13%)

Query: 135 PHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLH 194
            H   + S  + L   G           +   LS  +  Y +  N      S     + +
Sbjct: 5   HHHHHHSSGRENLYFQG-----STALRPYHDVLSQWQRHYNADRNRWH---SAWRQANSN 56

Query: 195 SLKELKLSFCELHHFP-LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
           + +    +   L     LL  A       L+L       Q P +   L+ L+H+ + +  
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
               +   + +   LE L+L  N L+   +S+   +L  +++L +    EL  ++P    
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRALPASIA--SLNRLRELSIRACPEL-TELPEPLA 171

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373
                         L                  L+SL L    I   L   +   + L  
Sbjct: 172 STDASGEHQ----GLVN----------------LQSLRLEWTGI-RSLPASIANLQNLKS 210

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF-LANANSLIF 432
           L + N+ +  ++  ++  +  LE LDL             F     L    L + ++L+ 
Sbjct: 211 LKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLLT 268

Query: 433 KINPNWVPP-----FQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS 479
                 +P       QL  L+LR C    R P  +        + +     +
Sbjct: 269 ------LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (265), Expect = 7e-25
 Identities = 43/252 (17%), Positives = 85/252 (33%), Gaps = 30/252 (11%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
                L HL H+ +        ++P  +     L  L L++      +P  + +L+ L+ 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRE 154

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L                +     L  L     +      +      L +L+ L+L +  +
Sbjct: 155 LS---------------IRACPELTELPEPLASTD----ASGEHQGLVNLQSLRLEWTGI 195

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
              P  S AN  +L +L +  +     +   + +L  L+ LDL                 
Sbjct: 196 RSLP-ASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 267 DLEVLSLEDNRLQGDISSL--GLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324
            L+ L L+D     ++ +L   +  LT ++KL L     L  ++P+   +L       + 
Sbjct: 254 PLKRLILKDCS---NLLTLPLDIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANCIILVP 309

Query: 325 STKLSQDISEIL 336
               +Q      
Sbjct: 310 PHLQAQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  102 bits (256), Expect = 9e-24
 Identities = 47/274 (17%), Positives = 87/274 (31%), Gaps = 48/274 (17%)

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTS--LRSLNLRNNRLSGVIPTSFKNFSILEALDV 631
           N    +           +    +   T     +L LR+  L    P      S L+ + +
Sbjct: 54  NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111

Query: 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR 691
               L+  +P  +  +F+ L  L L  N      P  +  L  L+ L +     L  +P 
Sbjct: 112 DAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPE 168

Query: 692 CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMN 751
            + +  A                                    E+  ++NL +S+ +   
Sbjct: 169 PLASTDA----------------------------------SGEHQGLVNL-QSLRLEWT 193

Query: 752 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
                +P  + NLQ L+SL + ++  +  +   I  +  +E LD          P     
Sbjct: 194 GIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG 251

Query: 812 LSFLNYLNLSNNNLNGEIPSS----TQLQSFDAS 841
            + L  L L + +    +P      TQL+  D  
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (253), Expect = 2e-23
 Identities = 41/293 (13%), Positives = 82/293 (27%), Gaps = 60/293 (20%)

Query: 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN 610
                 L+L +    +  PD       L+ + +        LP ++     L +L L  N
Sbjct: 80  QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 611 RLSGVIPTSFKNFSILEALDVGENELVGSIPTWIG--------ERFSRLMILILRSNKFH 662
            L   +P S  + + L  L +     +  +P  +         +    L  L L      
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 663 GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIV 722
              P  +  L +L+ L +  + L   +   I++                           
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHL-------------------------- 228

Query: 723 EDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 782
               L                  +D+         P        L+ L L        +P
Sbjct: 229 --PKL----------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN---NLNGEIPSS 832
            +I  +  +E LD        ++P  ++ L     + +  +    L+   P +
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 50/377 (13%), Positives = 110/377 (29%), Gaps = 84/377 (22%)

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
              L  +       +   L   ++  + D +    + +       +         +G  +
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIETRTGRAL 68

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIF-DLSNNALS---GSIFHLICQGENFSKNIEFLKL 559
                     +   ++  +   G +  +L +  L       F L         +++ + +
Sbjct: 69  ---------KATADLLEDATQPGRVALELRSVPLPQFPDQAFRL--------SHLQHMTI 111

Query: 560 STNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS 619
                 E +PD    +  L TL L  N    +LP SI +L  LR L++R       +P  
Sbjct: 112 DAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 620 FKNFSI---------LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC 670
             +            L++L +    +  S+P  I      L  L +R++         + 
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLSA-LGPAIH 226

Query: 671 RLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730
            L  L+ LD+   + L   P                                    L   
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGR----------------------------APL--- 255

Query: 731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790
                        + + +   +    +P+++  L  L+ L+L   +   R+P  I  + +
Sbjct: 256 -------------KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

Query: 791 IESLDFSANQLSGQIPQ 807
              +    +  +     
Sbjct: 303 NCIILVPPHLQAQLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 59/372 (15%), Positives = 102/372 (27%), Gaps = 75/372 (20%)

Query: 268 LEVLSLED-NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
            E L  +    L+     L             +                      +    
Sbjct: 14  RENLYFQGSTALRPYHDVLS--QWQRHYNADRNRWHS-----AWRQANSNNPQIETRTGR 66

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
            L      +             +L LR   +     +Q  +   L  + +    +   +P
Sbjct: 67  ALKATADLL----EDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELP 120

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV 446
            ++ Q A LE+L L+ N L    + I   +L +L      A               +LT 
Sbjct: 121 DTMQQFAGLETLTLARNPLRALPASI--ASLNRLRELSIRACP-------------ELTE 165

Query: 447 L--ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504
           L   L S          + LQ     L +  T I   +P +  N +     L +  + + 
Sbjct: 166 LPEPLASTDASGEHQGLVNLQS----LRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL- 218

Query: 505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF 564
                                        +AL  +I HL          +E L L     
Sbjct: 219 -----------------------------SALGPAIHHL--------PKLEELDLRGCTA 241

Query: 565 SEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFS 624
               P  +     L+ L L + +   +LP+ I  LT L  L+LR       +P+      
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 625 ILEALDVGENEL 636
               + V  +  
Sbjct: 302 ANCIILVPPHLQ 313

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 3e-19
 Identities = 52/398 (13%), Positives = 102/398 (25%), Gaps = 93/398 (23%)

Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
           + S    L   G+         L       + D              +  N+ ++ +   
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 276 NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
             L+     L          L L     L  + P    +L  L                 
Sbjct: 66  RALKATADLLEDATQPGRVALELRSV-PLP-QFPDQAFRLSHL----------------- 106

Query: 336 LGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANL 395
                       + + +    +   L + + QF  L  L L+ N +  ++P S+  +  L
Sbjct: 107 ------------QHMTIDAAGL-MELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152

Query: 396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLG 455
             L +                LT+L   LA+ ++              L  L L    + 
Sbjct: 153 RELSIRACP-----------ELTELPEPLASTDASGEHQGLV-----NLQSLRLEWTGI- 195

Query: 456 PRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSM 515
              P  +   + L  L I ++ +S  +  A  + + +   L++ G       P       
Sbjct: 196 RSLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-LPKLEELDLRGCTALRNYPP------ 247

Query: 516 PLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNW 575
                                                 ++ L L        +P      
Sbjct: 248 -----------------------IFGGR--------APLKRLILKDCSNLLTLPLDIHRL 276

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS 613
            +L  L+L        LP  I  L +   + +  +  +
Sbjct: 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 2e-18
 Identities = 59/333 (17%), Positives = 104/333 (31%), Gaps = 55/333 (16%)

Query: 383 GSIPLSLGQMANLESLDLSN-NKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPP 441
           GS        +  E+L       L      +      +  +   N     ++        
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLS--QWQRHYNADRNRWHSAWRQ-----AN 54

Query: 442 FQLTVLELRSCHLGPRFPLWLQL--QKKLNDLDISSTRISDKIPRAFWNSIFQYY---YL 496
                +E R+          L+   Q     L++ S  +       F +  F+     ++
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-----QFPDQAFRLSHLQHM 109

Query: 497 NVSGNQIYGGVPKFDSPSMPLIIT--PSLLLGSIFDLSNNALS---GSIFHLICQGENFS 551
            +    +           +P  +     L       L+ N L     SI  L        
Sbjct: 110 TIDAAGL---------MELPDTMQQFAGL---ETLTLARNPLRALPASIASL-------- 149

Query: 552 KNIEFLKLSTNHFSEGIPD---------CWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSL 602
             +  L +        +P+                L++L L       SLP SI  L +L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208

Query: 603 RSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFH 662
           +SL +RN+ LS  +  +  +   LE LD+     + + P   G   + L  LIL+     
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNL 266

Query: 663 GDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
              P+ + RL  L+ LD+     L  +P  I  
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 66.5 bits (163), Expect = 9e-12
 Identities = 29/271 (10%), Positives = 74/271 (27%), Gaps = 50/271 (18%)

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS 649
           GS        +   +L  + +            +      D                  S
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN------S 55

Query: 650 RLMILILRSNKFHGDFP--IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ 707
               +  R+ +        ++         L++     L   P      S +        
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTID-- 112

Query: 708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV--RSIDISMNNFSGEIPVEVTNLQ 765
                        +     L         +++       ++ ++ N     +P  + +L 
Sbjct: 113 ----------AAGL---MELP--------DTMQQFAGLETLTLARNPLR-ALPASIASLN 150

Query: 766 GLQSLNLSHNLFTGRIPDNIG---------VMRSIESLDFSANQLSGQIPQSMSNLSFLN 816
            L+ L++        +P+ +           + +++SL      +   +P S++NL  L 
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLK 209

Query: 817 YLNLSNNNLNGEIPSS----TQLQSFDASSF 843
            L + N+ L+  +  +     +L+  D    
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  126 bits (319), Expect = 1e-30
 Identities = 82/475 (17%), Positives = 168/475 (35%), Gaps = 31/475 (6%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ 229
            + L +S  ++S+       I+ L  L+ L+LS   +             L  LD+S N+
Sbjct: 54  TKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 230 FQGQIPSRLGNLTSLKHLDLYSNQFNS-AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLD 288
            Q  I      + SL+HLDL  N F+   V      L  L  L L   + +  +  L + 
Sbjct: 112 LQN-ISC--CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVA 167

Query: 289 NLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELE 348
           +L     LL   +  + G    S       T   +     S    ++    +     +L 
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 349 SLYL-----RGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNN 403
           ++ L     +    F     +      +    +                  +E L++ N 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286

Query: 404 KLNGTVSEIHFVNLTKLVSFLA--NANSLIFKINPNWVPPF--QLTVLELRSCHLGPRFP 459
            +   +    F      +  L   +  + +F  +   +     ++ +  L          
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346

Query: 460 LWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLII 519
           +          L+ +    +D + +   +++ +   L +  N +      F   ++    
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGL----KNFFKVALMTKN 401

Query: 520 TPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLR 579
             SL      D+S N+L+   +   C     +++I  L LS+N  +  +  C    P+++
Sbjct: 402 MSSLET---LDVSLNSLNSHAYDRTCAW---AESILVLNLSSNMLTGSVFRCLP--PKVK 453

Query: 580 TLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
            L+L NN    S+P  +  L +L+ LN+ +N+L  V    F   + L+ + + +N
Sbjct: 454 VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 5e-18
 Identities = 62/356 (17%), Positives = 115/356 (32%), Gaps = 55/356 (15%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR-----FTGMIPHQLGNL-SNLQ 145
           +  L HLDLS NDF  + + K   +L  L +L LS A+        +    L  +  +L 
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLV 179

Query: 146 YLDLSGVYFE-LHAETISWLS---------------GLSLLEHLYISFVNLSKASDSLLV 189
              + G   E L     + L                 ++ L HL +S + L+  +   L+
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLM 239

Query: 190 INSLHSLKELKLSFCELHH--------FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGN- 240
                  +   L    L H          L        +  L++       +I       
Sbjct: 240 TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTY 299

Query: 241 ----LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
               L SL    + +  F  +     S   ++ +  L  +     I  +   + +S   L
Sbjct: 300 SETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP-FIHMVCPPSPSSFTFL 358

Query: 297 LLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQ 356
             + N      +      L +L +  +    L ++  ++  +        + SL      
Sbjct: 359 NFTQN-VFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTK-----NMSSLETLDVS 411

Query: 357 I-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
           +       +            LN   LS+N + GS+   L     ++ LDL NN++
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLN---LSSNMLTGSVFRCLPP--KVKVLDLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 6e-18
 Identities = 91/610 (14%), Positives = 171/610 (28%), Gaps = 135/610 (22%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
              + +D S       +P         K L L  N  +   +  +S L++L VL L  NR
Sbjct: 31  ELESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR 87

Query: 278 LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG 337
           ++  +          ++ L +S N               +L + S               
Sbjct: 88  IR-SLDFHVFLFNQDLEYLDVSHN---------------RLQNIS--------------- 116

Query: 338 IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS--LGQMANL 395
                                  + +       L  L LS N  D  +P+    G +  L
Sbjct: 117 --------------------CCPMAS-------LRHLDLSFNDFD-VLPVCKEFGNLTKL 148

Query: 396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLG 455
             L LS  K    +  +   +L      L   +  I       +     TVL L      
Sbjct: 149 TFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207

Query: 456 PRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSM 515
                       L  L +S+ +++D+  +     + +        N     +      S+
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267

Query: 516 PLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS-KNIEFLKLSTNHFSEGIPDCWMN 574
            L            ++ N  ++  I          + K++    +    F       +  
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327

Query: 575 WPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
           +  +    L  ++      +   + +S   LN   N  +  +         L+ L +  N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN 694
            L  +                                  ++  L+    SL        N
Sbjct: 388 GLK-NFFKVAL-------------------------MTKNMSSLETLDVSL--------N 413

Query: 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS 754
           + ++ A   +   +  IL      N +   T  V +        +   V+ +D+  N   
Sbjct: 414 SLNSHAYDRTCAWAESILVLNLSSNML---TGSVFR-------CLPPKVKVLDLHNNRIM 463

Query: 755 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 814
             IP +VT+LQ LQ LN++ N     +PD                            L+ 
Sbjct: 464 -SIPKDVTHLQALQELNVASNQLK-SVPDG-----------------------VFDRLTS 498

Query: 815 LNYLNLSNNN 824
           L Y+ L +N 
Sbjct: 499 LQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 89/502 (17%), Positives = 151/502 (30%), Gaps = 99/502 (19%)

Query: 337 GIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL 389
              S     EL  L L   +I       F    +       L +L +S+N++     +S 
Sbjct: 70  PDISFLS--ELRVLRLSHNRIRSLDFHVFLFNQD-------LEYLDVSHNRLQN---ISC 117

Query: 390 GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLEL 449
             MA+L  LDLS N  +       F NLTKL +FL  + +   +++              
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKL-TFLGLSAAKFRQLD-------------- 162

Query: 450 RSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPK 509
                         L      LD+ S  I      +         +L    N ++  V  
Sbjct: 163 --------LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS-VQV 213

Query: 510 FDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
             S +        L L +I     N      F           N+    + T        
Sbjct: 214 NMSVNA----LGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKL 269

Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGT-----LTSLRSLNLRNNRLSGVIPTSFKNFS 624
             +     +  LN+ N   T  +     T     L SL   +++N          +  F+
Sbjct: 270 FQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA 329

Query: 625 ILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684
            +    +  ++    I        S    L    N F          L  LQ L +  N 
Sbjct: 330 EMNIKMLSISDT-PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVR 744
           L                                        +      + +  S L    
Sbjct: 389 L---------------------------------------KNFFKVALMTKNMSSLET-- 407

Query: 745 SIDISMNNF-SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 803
            +D+S+N+  S          + +  LNLS N+ TG +   +     ++ LD   N++  
Sbjct: 408 -LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463

Query: 804 QIPQSMSNLSFLNYLNLSNNNL 825
            IP+ +++L  L  LN+++N L
Sbjct: 464 SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 70.3 bits (172), Expect = 1e-12
 Identities = 63/356 (17%), Positives = 119/356 (33%), Gaps = 59/356 (16%)

Query: 62  LNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIP----KYLASL 117
             L   F P+   + Q +M V     + L    L ++ L+  + Q +           +L
Sbjct: 197 TVLHLVFHPNSLFSVQVNMSV-----NALGHLQLSNIKLNDENCQRLMTFLSELTRGPTL 251

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
           +N+   ++       +   Q      ++YL++  +      +   +    + L+ L I  
Sbjct: 252 LNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEH 311

Query: 178 V-NLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS 236
           V N         + +    +    LS  +     ++   + SS T L+ + N F   +  
Sbjct: 312 VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQ 371

Query: 237 RLGNLTSLKHLDLYSNQFNS--AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ 294
               L  L+ L L  N   +   V      ++ LE L +  N L             SI 
Sbjct: 372 GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431

Query: 295 KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
            L LS N                LT                  +F  C+  +++ L L  
Sbjct: 432 VLNLSSN---------------MLTG----------------SVFR-CLPPKVKVLDLHN 459

Query: 355 CQI------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL-SLGQMANLESLDLSNN 403
            +I        HL         L  L +++NQ+  S+P     ++ +L+ + L +N
Sbjct: 460 NRIMSIPKDVTHLQA-------LQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 28/165 (16%), Positives = 56/165 (33%), Gaps = 9/165 (5%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
                 L+ + N F    + +  ++L  L+ L L +               N+  L+   
Sbjct: 352 PSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLD 409

Query: 152 VYFELHAETISWL--SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF 209
           V              +    +  L +S   L+ +    L       +K L L    +   
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----VKVLDLHNNRIMSI 465

Query: 210 PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           P     +  +L  L+++ NQ +         LTSL+++ L+ N +
Sbjct: 466 PK-DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 50/268 (18%), Positives = 84/268 (31%), Gaps = 33/268 (12%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
           PR + L+L  N+ +      I  L+ LR L L +NR+  +    F     LE LDV  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 636 LVGSIPTWIGERFSRLMILILRSNKF-----HGDFPIQLCRLASLQILDVAYNSLLGTIP 690
           L  +I        + L  L L  N F       +F      L  L  L ++         
Sbjct: 112 LQ-NISC---CPMASLRHLDLSFNDFDVLPVCKEFG----NLTKLTFLGLSAAKF----- 158

Query: 691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISM 750
                       D    +   L     D           +   +   ++L+LV   +   
Sbjct: 159 ---------RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209

Query: 751 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 810
           +         + +LQ L ++ L+       +     + R    L+ +   +      S+ 
Sbjct: 210 SVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 811 NLSFLN-----YLNLSNNNLNGEIPSST 833
              F       YLN+ N  +   I    
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREE 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (299), Expect = 2e-29
 Identities = 44/340 (12%), Positives = 104/340 (30%), Gaps = 73/340 (21%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
                   ++ +  +   +     S  N++ L+LS    + +    L   + L+ L+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                       L  LS L  L ++   + +       +    S++ L  +   +     
Sbjct: 68  NVL----YETLDLESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRVS- 115

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
              +       + L+ N+         G  + +++LDL  N+        +  +N  E+ 
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--------IDTVNFAELA 165

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQD 331
           +                +  +++ L L +N                +          ++ 
Sbjct: 166 A----------------SSDTLEHLNLQYN---------------FIYDVK-GQVVFAK- 192

Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
                          L++L L   ++   +  +      + ++ L NN++   I  +L  
Sbjct: 193 ---------------LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRF 235

Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLI 431
             NLE  DL  N  +       F    ++ +        +
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 64/358 (17%), Positives = 116/358 (32%), Gaps = 55/358 (15%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
           +  + +  K  K++   L         +  ++  LDLSGN       + L   T L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI 308
           L SN         L  L+ L  L L +N +Q       L    SI+ L  + N       
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANN------- 109

Query: 309 PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
                    ++  S                  G      +++YL   +I        G  
Sbjct: 110 --------NISRVS-------------CSRGQG-----KKNIYLANNKITMLRDLDEGCR 143

Query: 369 KRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
            R+ +L L  N++D  +          LE L+L  N +     ++ F  L  L   L++ 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL--DLSS- 200

Query: 428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487
           N L   + P +     +T + LR+  L       L+  + L   D+          R F+
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLII--------TPSLLLGSIFDLSNNALS 537
           +   +   +     +   G  + +     L           P+     +  L ++   
Sbjct: 259 SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 42/311 (13%), Positives = 99/311 (31%), Gaps = 41/311 (13%)

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
              +  K++ +   + +     +   ++ L+L  N  +      +   T L  LNL +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 612 LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR 671
           L   +    ++ S L  LD+  N +   +          +  L   +N       +   R
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-QELLV-----GPSIETLHAANNNISR---VSCSR 118

Query: 672 LASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731
               + + +A N +           S +   D               N+I    ++    
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK------------LNEI---DTVNFAE 163

Query: 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791
                 +  + +  +++  N    ++  +      L++L+LS N     +         +
Sbjct: 164 LA----ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN-----GEIPSSTQLQSFDASSFAGN 846
             +    N+L   I +++     L + +L  N  +          + ++Q+    +    
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV--K 273

Query: 847 DLCGAPLSSCT 857
            L G     CT
Sbjct: 274 KLTGQNEEECT 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 5e-22
 Identities = 61/332 (18%), Positives = 122/332 (36%), Gaps = 42/332 (12%)

Query: 567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSIL 626
            I +   N  R +   + +++   +L     +  +++ L+L  N LS +       F+ L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL 686
           E L++  N L  ++     E  S L  L L +N        +L    S++ L  A N+ +
Sbjct: 61  ELLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-I 111

Query: 687 GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSI 746
             +    +            Q    +Y    +NKI     L             + V+ +
Sbjct: 112 SRVS--CSRG----------QGKKNIYL--ANNKITMLRDLDEGC--------RSRVQYL 149

Query: 747 DISMNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 805
           D+ +N            +   L+ LNL +N     +   +     +++LD S+N+L+  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FM 206

Query: 806 PQSMSNLSFLNYLNLSNNNLN---GEIPSSTQLQSFDASSFAGNDL-CGAPLSSCTEKNA 861
                + + + +++L NN L      +  S  L+ FD     GN   CG      ++   
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLRDFFSKNQR 263

Query: 862 IVTDDQNRIGNEEDGDEVDWTLYVSMALGFVV 893
           + T  +  +      +E + T+      G   
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYC 295

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 2e-20
 Identities = 36/221 (16%), Positives = 72/221 (32%), Gaps = 18/221 (8%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
             L  L  L  LDL+ N  Q +          ++  L+ +    +  +          + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNIS-RVS--CSRGQGKKN 124

Query: 147 LDLSGVYF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE 205
           + L+      L           S +++L +    +   + + L   S  +L+ L L +  
Sbjct: 125 IYLANNKITMLRDLDE---GCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNF 180

Query: 206 LHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKL 265
           ++         F+ L TLDLS N+    +     +   +  + L +N+    +   L   
Sbjct: 181 IYDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFS 236

Query: 266 NDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG 306
            +LE   L  N                +Q +      +L G
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 88.1 bits (219), Expect = 6e-19
 Identities = 48/250 (19%), Positives = 90/250 (36%), Gaps = 21/250 (8%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
            L     L  L+LS N          L SL  LR L+L+          +L    +++ L
Sbjct: 53  DLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQ-----ELLVGPSIETL 104

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
             +          +S  S     +++Y++   ++   D  L       ++ L L   E+ 
Sbjct: 105 HAANNNI----SRVS-CSRGQGKKNIYLANNKITMLRD--LDEGCRSRVQYLDLKLNEID 157

Query: 208 HFPLLSS-ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                   A+  +L  L+L  N     +  ++     LK LDL SN+  + +        
Sbjct: 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQSAA 214

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
            +  +SL +N+L   I    L    +++   L  N    G +   F K  ++ + +  + 
Sbjct: 215 GVTWISLRNNKLV-LIEK-ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272

Query: 327 KLSQDISEIL 336
           K     +E  
Sbjct: 273 KKLTGQNEEE 282

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 81.2 bits (201), Expect = 1e-16
 Identities = 48/339 (14%), Positives = 107/339 (31%), Gaps = 33/339 (9%)

Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
           I     N    K   +  +    A+        +++ L L  N L   IS+  L   T +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 294 QKLLLSWNDELGGKI--PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
           + L LS N      +        L  L +  + +  + +       +  G     +E+L+
Sbjct: 61  ELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQE-------LLVG---PSIETLH 105

Query: 352 LRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE 411
                I   +     + +    + L+NN++     L  G  + ++ LDL  N+++     
Sbjct: 106 AANNNI-SRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 412 IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL 471
               +   L       N +        V   +L  L+L S  L        Q    +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWI 219

Query: 472 DISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDL 531
            + + ++   I +A   S     + ++ GN            ++    + +  + ++   
Sbjct: 220 SLRNNKLVL-IEKALRFSQ-NLEHFDLRGNGF-------HCGTLRDFFSKNQRVQTVAKQ 270

Query: 532 SNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPD 570
           +   L+G                   +     F++ +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 46/306 (15%), Positives = 100/306 (32%), Gaps = 61/306 (19%)

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
           +I          +   ++++ L   ++ +   +                           
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-RQSAW------------------------N 35

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           +  L+L    L       L    KL  L++SS  + + +     +++     L+++ N +
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR---TLDLNNNYV 92

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALS---GSIFHLICQGENFSKNIEFLKLS 560
                        L++ PS+        +NN +S    S            +  + + L+
Sbjct: 93  -----------QELLVGPSI---ETLHAANNNISRVSCSRG----------QGKKNIYLA 128

Query: 561 TNHFSEGIPDCWMNWPRLRTLNLGNNNFTG-SLPMSIGTLTSLRSLNLRNNRLSGVIPTS 619
            N  +           R++ L+L  N     +      +  +L  LNL+ N +  V    
Sbjct: 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV 188

Query: 620 FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILD 679
              F+ L+ LD+  N+L   +        + +  + LR+NK        L    +L+  D
Sbjct: 189 V--FAKLKTLDLSSNKLA-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFD 243

Query: 680 VAYNSL 685
           +  N  
Sbjct: 244 LRGNGF 249

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  122 bits (308), Expect = 2e-29
 Identities = 98/546 (17%), Positives = 180/546 (32%), Gaps = 81/546 (14%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELH 157
           +D S N      +PK L+       LN+SQ   + +    + +LS L+ L +S       
Sbjct: 5   VDRSKNGLI--HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISH------ 54

Query: 158 AETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF 217
                  + +  L+                 V      L+ L LS  +L     +S    
Sbjct: 55  -------NRIQYLDI---------------SVFKFNQELEYLDLSHNKLVK---ISCHPT 89

Query: 218 SSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            +L  LDLS N F    I    GN++ LK L L +     + +  ++ LN  +VL +   
Sbjct: 90  VNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
                      + L       L               K           T  + ++S I 
Sbjct: 150 TY---GEKEDPEGLQDFNTESLHIVF--------PTNKEFHFILDVSVKTVANLELSNIK 198

Query: 337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE 396
            +          S+  +             +   L    +          L L     + 
Sbjct: 199 CVLEDNKCSYFLSILAKL--------QTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 397 SLDLSNNKLNG----TVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF--QLTVLELR 450
              +SN KL G       +    +L  L   +    S +F    +++      + +    
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALS--IHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
                    L          LD S+  ++D +       + +   L +  NQ+       
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQL------- 360

Query: 511 DSPSMPLIITPSLLLGS--IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI 568
               +  I   +  + S    D+S N++S       C     +K++  L +S+N  ++ I
Sbjct: 361 --KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW---TKSLLSLNMSSNILTDTI 415

Query: 569 PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEA 628
             C    PR++ L+L +N    S+P  +  L +L+ LN+ +N+L  V    F   + L+ 
Sbjct: 416 FRC--LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 629 LDVGEN 634
           + +  N
Sbjct: 473 IWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (279), Expect = 9e-26
 Identities = 77/482 (15%), Positives = 149/482 (30%), Gaps = 83/482 (17%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
              T L++S N       S + +L+ L+ L +  N+     +       +LE L L  N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 278 LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG 337
           L      +      +++ L LS+N                  +                 
Sbjct: 81  LV----KISCHPTVNLKHLDLSFN---------------AFDA----------------- 104

Query: 338 IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
                         L  C+ FG+++        L FLGLS   ++ S  L +  +   + 
Sbjct: 105 --------------LPICKEFGNMSQ-------LKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV--------LEL 449
           L +               +       +    +  F    +        +        LE 
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 450 RSCHLGPRFPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVSGNQIYG 505
             C         LQ   KL++L +++   +      I +  W++   Y+ ++   N    
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSIS---NVKLQ 260

Query: 506 GVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565
           G   F           SL   SI  + ++       ++         N+     + +   
Sbjct: 261 GQLDFRDFDY---SGTSLKALSIHQVVSDVFGFPQSYI----YEIFSNMNIKNFTVSGTR 313

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS--FKNF 623
                C         L+  NN  T ++  + G LT L +L L+ N+L  +   +      
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683
             L+ LD+ +N +              L+ L + SN         L     +++LD+  N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN 431

Query: 684 SL 685
            +
Sbjct: 432 KI 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 96.9 bits (241), Expect = 5e-21
 Identities = 65/399 (16%), Positives = 139/399 (34%), Gaps = 67/399 (16%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
             +L HLDLS N F  + I K   ++  L++L LS           + +L+  + L + G
Sbjct: 89  TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLG 148

Query: 152 VYFELHAETIS----WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKEL-------- 199
             +    +           L ++      F  +   S   +    L ++K +        
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 200 ---------------KLSFCELHH-----FPLLSSANFSSLTTLDLSGNQFQGQIPSRLG 239
                           L+   +         +L     +++    +S  + QGQ+  R  
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 240 -----NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ 294
                +L +L    + S+ F           +++ + +   +  +  +  L    ++   
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFL 327

Query: 295 KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
            L  S N  L   +  + G L +L +  +   +L +++S+I  + +      L+ L +  
Sbjct: 328 HLDFSNN-LLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMK--SLQQLDISQ 383

Query: 355 CQI--------FGHLT---------NQLGQF------KRLNFLGLSNNQMDGSIPLSLGQ 391
             +                      N L          R+  L L +N++  SIP  + +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVK 442

Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
           +  L+ L++++N+L  +V +  F  LT L     + N  
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 97/608 (15%), Positives = 169/608 (27%), Gaps = 157/608 (25%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
             +D S N     +P  L        L++  N  +      +  L+ L +L +  NR+Q 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ- 58

Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFS 340
            +          ++ L LS N               KL   S                  
Sbjct: 59  YLDISVFKFNQELEYLDLSHN---------------KLVKIS------------------ 85

Query: 341 GCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS--LGQMANLESL 398
                                 N       L  L LS N  D ++P+    G M+ L+ L
Sbjct: 86  -----------------CHPTVN-------LKHLDLSFNAFD-ALPICKEFGNMSQLKFL 120

Query: 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRF 458
            LS   L    S +   +L      L    +   K +P       L      S H+    
Sbjct: 121 GLSTTHLE-KSSVLPIAHLNISKVLLVLGETYGEKEDPE-----GLQDFNTESLHI---- 170

Query: 459 PLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI 518
                           + +    I      ++      N+           F S    L 
Sbjct: 171 -------------VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQ 217

Query: 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRL 578
             P L       L+N   + + F  I Q    +  + +  +S                  
Sbjct: 218 TNPKLSN---LTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQG------------ 261

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
                           S  +L +L    + ++         ++ FS +   +   +    
Sbjct: 262 -------QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT-R 313

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698
            +      + S  + L   +N            L  L+ L +  N L   + +     + 
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQ 372

Query: 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP 758
           M                          SL                + +DIS N+ S +  
Sbjct: 373 M-------------------------KSL----------------QQLDISQNSVSYDEK 391

Query: 759 VEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 817
               +  + L SLN+S N+ T  I   +     I+ LD  +N++   IP+ +  L  L  
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQE 448

Query: 818 LNLSNNNL 825
           LN+++N L
Sbjct: 449 LNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 89.9 bits (223), Expect = 9e-19
 Identities = 55/331 (16%), Positives = 107/331 (32%), Gaps = 38/331 (11%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
            L  +K ++  +        +   +    L NL   N+     + +   QL   + + Y 
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 148 DLSGVYF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
            +S V             SG SL        V+         +     ++     +    
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS--AVLGWLSK 264
               +L  +  S    LD S N     +    G+LT L+ L L  NQ      +    ++
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372

Query: 265 LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324
           +  L+ L +  N +  D          S+  L +S N                LT     
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN---------------ILTD---- 413

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGS 384
                            C+   ++ L L   +I   +  Q+ + + L  L +++NQ+  S
Sbjct: 414 -------------TIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KS 458

Query: 385 IPL-SLGQMANLESLDLSNNKLNGTVSEIHF 414
           +P     ++ +L+ + L  N  + +   I +
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 4e-29
 Identities = 89/538 (16%), Positives = 166/538 (30%), Gaps = 96/538 (17%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
           INP  +    L       ++    ++P    ++ +      + + +    P   G    +
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 145 QYLDLSGVYFELHAETISWLSGLSL---------LEHLYISFVNLSKASDSLLVINSLHS 195
               L     +  A  +  L+ L L         LE L  S  +L++  +      SL S
Sbjct: 61  AVSRLRDC-LDRQAHELE-LNNLGLSSLPELPPHLESLVASCNSLTELPEL---PQSLKS 115

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
           L     +   L   P         L  L +S NQ + ++P  L N + LK +D+ +N   
Sbjct: 116 LLVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK 166

Query: 256 SAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL 315
                       LE ++  +N+L+ ++  L   NL  +  +    N      +       
Sbjct: 167 K----LPDLPPSLEFIAAGNNQLE-ELPELQ--NLPFLTAIYADNN-----SLKKLPDLP 214

Query: 316 CKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLG 375
             L S    +  L + + E+  +        L ++Y     +   L +     + LN   
Sbjct: 215 LSLESIVAGNNILEE-LPELQNLPF------LTTIYADNNLL-KTLPDLPPSLEALNVRD 266

Query: 376 LSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKIN 435
                +            +L  LD+S N  +G        NL  L +      SL     
Sbjct: 267 NYLTDLPELPQ-------SLTFLDVSENIFSGLSELPP--NLYYLNASSNEIRSLCDLPP 317

Query: 436 PNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYY 495
                   L  L + +  L    P       +L  L  S   +++ +P            
Sbjct: 318 -------SLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VP----ELPQNLKQ 361

Query: 496 LNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE 555
           L+V  N +                    +  S+ DL  N+    +  L        +N++
Sbjct: 362 LHVEYNPL---------------REFPDIPESVEDLRMNSHLAEVPELP-------QNLK 399

Query: 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS 613
            L + TN   E  PD   +   +  L + +         +  T   L      ++   
Sbjct: 400 QLHVETNPLRE-FPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  108 bits (271), Expect = 6e-25
 Identities = 94/492 (19%), Positives = 159/492 (32%), Gaps = 89/492 (18%)

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
            + + + L       +    ++P    N+ S        +++         +  ++ V  
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 273 LEDNRLQG----DISSLGL----DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324
           L D   +     ++++LGL    +    ++ L+ S N  L  ++P     L  L   +  
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCN-SL-TELPELPQSLKSLLVDNNN 122

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGS 384
              LS                 LE L +   Q+   L   L     L  + + NN +   
Sbjct: 123 LKALSDLPP------------LLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-K 167

Query: 385 IPLSLGQMANLESLDLSNNKLNGTVSEIH-FVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
           +P       +LE +   NN+L     E+    NL  L +  A+ NSL  K+      P  
Sbjct: 168 LPDLPP---SLEFIAAGNNQL----EELPELQNLPFLTAIYADNNSLK-KLPDL---PLS 216

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           L  +   +  L    P    L   L  +   +  +   +P    +       LNV  N +
Sbjct: 217 LESIVAGNNILE-ELPELQNL-PFLTTIYADNNLLK-TLP----DLPPSLEALNVRDNYL 269

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
                      +P +   SL    + +   + LS               N+ +L  S+N 
Sbjct: 270 ---------TDLPELP-QSLTFLDVSENIFSGLSELP-----------PNLYYLNASSNE 308

Query: 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF 623
               + D     P L  LN+ NN     LP        L  L    N L+  +P   +N 
Sbjct: 309 IRS-LCD---LPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN- 358

Query: 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683
             L+ L V  N L    P           +  LR N    + P       +L+ L V  N
Sbjct: 359 --LKQLHVEYNPLR-EFPDIPES------VEDLRMNSHLAEVPE---LPQNLKQLHVETN 406

Query: 684 SLLGTIPRCINN 695
            L    P    +
Sbjct: 407 PLR-EFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 5e-19
 Identities = 95/547 (17%), Positives = 180/547 (32%), Gaps = 117/547 (21%)

Query: 289 NLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELE 348
           + T +Q+ L   ++    ++P     +   T +  A ++  ++     G        E+ 
Sbjct: 9   SNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR-----EMA 61

Query: 349 SLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT 408
              LR C             ++ + L L+N  +  S+P       +LESL  S N L   
Sbjct: 62  VSRLRDCLD-----------RQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-- 104

Query: 409 VSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKL 468
                   L +L   L +       +      P  L  L + +  L  + P        L
Sbjct: 105 -------ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL-EKLPELQNS-SFL 155

Query: 469 NDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSI 528
             +D+ +  +  K+P    +      ++    NQ+           +P +     L  + 
Sbjct: 156 KIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLE---------ELPELQNLPFL--TA 199

Query: 529 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNF 588
               NN+L   +  L         ++E +    N   E       N P L T+   NN  
Sbjct: 200 IYADNNSLK-KLPDLPL-------SLESIVAGNNILEE--LPELQNLPFLTTIYADNNLL 249

Query: 589 TGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERF 648
             +LP       SL +LN+R+N L+  +P   ++   L  LDV EN       + + E  
Sbjct: 250 K-TLPDLPP---SLEALNVRDNYLTD-LPELPQS---LTFLDVSENIF-----SGLSELP 296

Query: 649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708
             L  L   SN+             SL+ L+V+ N L+  +P                  
Sbjct: 297 PNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLI-ELPALPPRLE----------- 340

Query: 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ 768
              L A    N +     +             NL + + +  N    E P    +++ L+
Sbjct: 341 --RLIA--SFNHL---AEV--------PELPQNL-KQLHVEYNPLR-EFPDIPESVEDLR 383

Query: 769 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828
             +    +     P+      +++ L    N L  + P    ++     L +++  +   
Sbjct: 384 MNSHLAEV-----PELPQ---NLKQLHVETNPLR-EFPDIPESVE---DLRMNSERVVDP 431

Query: 829 IPSSTQL 835
              + + 
Sbjct: 432 YEFAHET 438

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 1e-17
 Identities = 83/456 (18%), Positives = 151/456 (33%), Gaps = 91/456 (19%)

Query: 385 IPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQL 444
           I         L+     ++ L     E    N+     +    +       P      ++
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLTEMPVEA--ENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 445 TVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504
            V  LR C           L ++ ++L++++  +S  +P            L  S N + 
Sbjct: 61  AVSRLRDC-----------LDRQAHELELNNLGLSS-LP----ELPPHLESLVASCNSL- 103

Query: 505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF 564
                     +P +   SL    + + +  ALS                +E+L +S N  
Sbjct: 104 --------TELPELP-QSLKSLLVDNNNLKALSDLP-----------PLLEYLGVSNNQL 143

Query: 565 SEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFS 624
            + +P+   N   L+ +++ NN+    LP       SL  +   NN+L   +P   +N  
Sbjct: 144 EK-LPELQ-NSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELP-ELQNLP 195

Query: 625 ILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS 684
            L A+    N L   +P         L  ++  +N        +L  L  L  +    N 
Sbjct: 196 FLTAIYADNNSLK-KLPDLPL----SLESIVAGNNILE--ELPELQNLPFLTTIYADNNL 248

Query: 685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV--MKGFLVEYNSILNL 742
           L  T+P    +  A+                  DN + +   L   +    V  N    L
Sbjct: 249 L-KTLPDLPPSLEAL---------------NVRDNYLTDLPELPQSLTFLDVSENIFSGL 292

Query: 743 ------VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF 796
                 +  ++ S N     +     +L+    LN+S+N     +P        +E L  
Sbjct: 293 SELPPNLYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPALPP---RLERLIA 344

Query: 797 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832
           S N L+ ++P+   NL     L++  N L  E P  
Sbjct: 345 SFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDI 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 68.5 bits (168), Expect = 4e-12
 Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 53/265 (20%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
           L+     ++N T  +P+    + S        +      P        +    + +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC--- 68

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
                       +   L L +       P        L+ L  + NSL   +P    +  
Sbjct: 69  ---------LDRQAHELELNNLGLS-SLPELP---PHLESLVASCNSL-TELPELPQSLK 114

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
           ++   +++               +               + +  L+  + +S N    ++
Sbjct: 115 SLLVDNNNL------------KAL---------------SDLPPLLEYLGVSNNQLE-KL 146

Query: 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 817
           P E+ N   L+ +++ +N    ++PD      S+E +    NQL  ++P  + NL FL  
Sbjct: 147 P-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTA 199

Query: 818 LNLSNNNLNGEIPSSTQLQSFDASS 842
           +   NN+L         L+S  A +
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 5e-06
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG----- 786
           F+   N     ++      +N + E+PVE  N++       + + +    P   G     
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 787 --------VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQS 837
                   + R    L+ +   LS  +P+   +   L  L  S N+L  E+P     L+S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKS 115

Query: 838 FDASSFAGNDLCGAP 852
               +     L   P
Sbjct: 116 LLVDNNNLKALSDLP 130

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (307), Expect = 5e-29
 Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 34/338 (10%)

Query: 86  NPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQ 145
               + L +   +    +  + +     L S   +  LNL+  +   +  +       +Q
Sbjct: 44  GFEDITLNNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ 102

Query: 146 YLDLSGVYF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC 204
            L +       L          + LL  L +   +LS     +   ++   L  L +S  
Sbjct: 103 KLYMGFNAIRYLPPHV---FQNVPLLTVLVLERNDLSSLPRGIF--HNTPKLTTLSMSNN 157

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK 264
            L      +    +SL  L LS N+    +   L  + SL H ++  N  ++     L+ 
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLST-----LAI 209

Query: 265 LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND--ELGGKIPTSFGKLCKLTSFS 322
              +E L    N     I+ +       +  L L  N+  +              L    
Sbjct: 210 PIAVEELDASHNS----INVVRGPVNVELTILKLQHNNLTDTA-----WLLNYPGLVEVD 260

Query: 323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD 382
           ++  +L + I      F       LE LY+   ++   L         L  L LS+N + 
Sbjct: 261 LSYNELEK-IMY--HPFVKMQR--LERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL 314

Query: 383 GSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
             +  +  Q   LE+L L +N +  T+       L  L
Sbjct: 315 -HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  110 bits (276), Expect = 4e-25
 Identities = 91/652 (13%), Positives = 194/652 (29%), Gaps = 112/652 (17%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           +       ++ +       +        ++   +    +  +    + L +   ++ L+L
Sbjct: 23  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI- 308
              Q         +  + ++ L +  N ++  +      N+  +  L+L  N      + 
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-----DLS 136

Query: 309 ---PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL 365
                 F    KLT+ SM++  L + I +    F    +  L++L L   ++       L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLER-IED--DTFQATTS--LQNLQLSSNRL---THVDL 188

Query: 366 GQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLA 425
                L    +S N +      +L     +E LD S+N +N  V     V LT L     
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTIL----- 237

Query: 426 NANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA 485
                  K+  N      LT               WL     L ++D+S   +  KI   
Sbjct: 238 -------KLQHN-----NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYH 272

Query: 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLIC 545
            +  + +   L +S N++                               AL+     +  
Sbjct: 273 PFVKMQRLERLYISNNRL------------------------------VALNLYGQPI-- 300

Query: 546 QGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605
                   ++ L LS NH    +      + RL  L L +N+   +L   + T  +L++L
Sbjct: 301 ------PTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNL 350

Query: 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGER---------FSRLMILIL 656
            L +N        +   F  +    V + +    I   +            +   ++  +
Sbjct: 351 TLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYI 408

Query: 657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS 716
                         R ++   ++   +       +           ++            
Sbjct: 409 ALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQL 468

Query: 717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNL 776
            + +I ++  L  +G   E ++ L   R     +   S  +    T+L+  Q+  L    
Sbjct: 469 TNEQIQQEQLL--QGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQ 526

Query: 777 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQ-SMSNLSFLNYLNLSNNNLNG 827
              R  +     +  E L+     L  Q+              +L    +  
Sbjct: 527 A--RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 80.0 bits (197), Expect = 1e-15
 Identities = 52/325 (16%), Positives = 103/325 (31%), Gaps = 32/325 (9%)

Query: 531 LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNW--PRLRTLNLGNNNF 588
              N          C   N   +  F  +  +  ++ +   + +      + +   N+  
Sbjct: 5   QRYNVKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 589 TGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERF 648
                  + +   +  LNL + ++  +   +F     ++ L +G N +   +P  + +  
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122

Query: 649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708
             L +L+L  N               L  L ++ N+L           +++     S   
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS--- 179

Query: 709 SDILYAFSGDNKIVEDTSLVMKGFL---VEYNSILNL-----VRSIDISMNNFSGEIPVE 760
                     N++      ++       V YN +  L     V  +D S N+ +  +   
Sbjct: 180 ---------SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGP 229

Query: 761 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 820
           V     L  L L HN  T      +     +  +D S N+L   +      +  L  L +
Sbjct: 230 V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI 285

Query: 821 SNNNL---NGEIPSSTQLQSFDASS 842
           SNN L   N        L+  D S 
Sbjct: 286 SNNRLVALNLYGQPIPTLKVLDLSH 310

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.7 bits (173), Expect = 1e-12
 Identities = 56/346 (16%), Positives = 104/346 (30%), Gaps = 46/346 (13%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
              L  L L  N+         L +   L  ++LS      ++ H    +  L+ L +S 
Sbjct: 231 NVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                           + L  L +    +              +LK L LS   L H   
Sbjct: 288 ----------------NRLVALNLYGQPIP-------------TLKVLDLSHNHLLHVE- 317

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWL------SKL 265
            +   F  L  L L  N     +   L    +LK+L L  N ++   L  L        +
Sbjct: 318 RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 374

Query: 266 NDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAS 325
           +D +     D +L+  +     D     + L       +  K+  + G+     + +   
Sbjct: 375 DDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQ 434

Query: 326 TKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSI 385
           +       +      G    E E   LR  ++      Q+ Q + L  L    +    ++
Sbjct: 435 SLSHYITQQGGVPLQGNEQLEAEVNELRA-EVQQLTNEQIQQEQLLQGLHAEIDT---NL 490

Query: 386 PLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLI 431
                    L     + NK+   + E     L +  +    A++  
Sbjct: 491 RRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQ 536

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 32/229 (13%), Positives = 62/229 (27%), Gaps = 16/229 (6%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
           +N     +  L  LDLS N      + +       L  L L       +   +L     L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTL 347

Query: 145 QYLDLSGVYFELHAETISWLSGLSLL--EHLYISFVNLSKASDSLLVINSLHSLKELKLS 202
           + L LS   ++      +    ++    +          +    L    S     +  L 
Sbjct: 348 KNLTLSHNDWD-CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQ 406

Query: 203 FCE---LHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVL 259
           +     +      +    S+  T++   +            L   + L+   N+  + V 
Sbjct: 407 YIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQ 466

Query: 260 G----WLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDEL 304
                 + +   L+ L  E +        L  D L      L      L
Sbjct: 467 QLTNEQIQQEQLLQGLHAEIDTNL-RRYRLPKDGLARSSDNLNKVFTHL 514

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  120 bits (303), Expect = 6e-29
 Identities = 73/324 (22%), Positives = 125/324 (38%), Gaps = 34/324 (10%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
               LDL  N  + +      AS  +L  L L++   + + P    NL NL+ L L    
Sbjct: 33  ETRLLDLGKNRIKTLN-QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 154 F-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL 212
              +        +GLS L  L IS   +    D +     L++LK L++   +L +    
Sbjct: 92  LKLIPLGV---FTGLSNLTKLDISENKIVILLDYMF--QDLYNLKSLEVGDNDLVYISHR 146

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
           + +  +SL  L L        IP+  L +L  L  L L     N+       +L  L+VL
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMASTKLSQ 330
            +        ++   L  L ++  L ++    L   +P  +   L  L   +++   +S 
Sbjct: 206 EISHWPYLDTMTPNCLYGL-NLTSLSITHC-NL-TAVPYLAVRHLVYLRFLNLSYNPIS- 261

Query: 331 DISEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDG 383
            I     +    +   L+ + L G Q+       F  L         L  L +S NQ+  
Sbjct: 262 TIEG--SMLHELL--RLQEIQLVGGQLAVVEPYAFRGLNY-------LRVLNVSGNQLT- 309

Query: 384 SIPLSL-GQMANLESLDLSNNKLN 406
           ++  S+   + NLE+L L +N L 
Sbjct: 310 TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  103 bits (258), Expect = 4e-23
 Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 8/211 (3%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L +L  LD+S N    +        L NL+ L +       +       L++L+ L L  
Sbjct: 103 LSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK 161

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
               L +     LS L  L  L +  +N++   D       L+ LK L++S         
Sbjct: 162 C--NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMT 217

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
            +     +LT+L ++       +P   + +L  L+ L+L  N  ++     L +L  L+ 
Sbjct: 218 PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           + L   +L   +       L  ++ L +S N
Sbjct: 277 IQLVGGQLA-VVEPYAFRGLNYLRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 4e-23
 Identities = 59/270 (21%), Positives = 103/270 (38%), Gaps = 26/270 (9%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L +L  L L  N  + I        L NL  L++S+ +   ++ +   +L NL+ L++  
Sbjct: 79  LFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 152 ---VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHH 208
              VY    A      SGL+ LE L +   NL+      L  + LH L  L+L    ++ 
Sbjct: 138 NDLVYISHRA-----FSGLNSLEQLTLEKCNLTSIPTEAL--SHLHGLIVLRLRHLNINA 190

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
               S      L  L++S   +   +        +L  L +      +     +  L  L
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMA 324
             L+L  N +   I    L  L  +Q++ L        ++    P +F  L  L   +++
Sbjct: 251 RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGG-----QLAVVEPYAFRGLNYLRVLNVS 304

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRG 354
             +L+  + E   +F       LE+L L  
Sbjct: 305 GNQLTT-LEE--SVFHSVGN--LETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 73/387 (18%), Positives = 130/387 (33%), Gaps = 75/387 (19%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            +    LDL  N+ +        +   L+ L+L  N  ++   G  + L +L  L L  N
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
           RL+  I       L+++ KL +S N                              I  +L
Sbjct: 91  RLK-LIPLGVFTGLSNLTKLDISEN-----------------------------KIVILL 120

Query: 337 -GIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
             +F       L+SL +    +       F  L +       L  L L    +      +
Sbjct: 121 DYMFQDLYN--LKSLEVGDNDLVYISHRAFSGLNS-------LEQLTLEKCNLTSIPTEA 171

Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLE 448
           L  +  L  L L +  +N  + +  F  L +L     +    +  + PN +    LT L 
Sbjct: 172 LSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 449 LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVP 508
           +  C+L     L ++    L  L++S   IS          + +   + + G Q+     
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE-LLRLQEIQLVGGQLA---- 285

Query: 509 KFDSPSMPLIITPSLLLG----SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF 564
                    ++ P    G     + ++S N L+ ++   +        N+E L L +N  
Sbjct: 286 ---------VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHS---VGNLETLILDSNPL 332

Query: 565 SEGIPDCWMNW--PRLRTLNLGNNNFT 589
           +    DC + W   R   LN      T
Sbjct: 333 AC---DCRLLWVFRRRWRLNFNRQQPT 356

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 7e-21
 Identities = 68/301 (22%), Positives = 124/301 (41%), Gaps = 35/301 (11%)

Query: 530 DLSNNALSGSIFHLICQGENFS--KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN 587
           DL  N +           + F+   ++E L+L+ N  S   P  + N   LRTL L +N 
Sbjct: 38  DLGKNRIK------TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 588 FTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGE 646
               +P+ +   L++L  L++  N++  ++   F++   L++L+VG+N+LV  I      
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFS 149

Query: 647 RFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706
             + L  L L            L  L  L +L + + ++   I      F  +      +
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYS--FKRLYRLKVLE 206

Query: 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQ 765
                    S    +   T   + G        LNL  S+ I+  N +  +P     +L 
Sbjct: 207 --------ISHWPYLDTMTPNCLYG--------LNL-TSLSITHCNLT-AVPYLAVRHLV 248

Query: 766 GLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN 824
            L+ LNLS+N  +  I  ++   +  ++ +     QL+   P +   L++L  LN+S N 
Sbjct: 249 YLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307

Query: 825 L 825
           L
Sbjct: 308 L 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.6 bits (233), Expect = 5e-20
 Identities = 62/288 (21%), Positives = 102/288 (35%), Gaps = 50/288 (17%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
           E        L L  N       D + ++P L  L L  N  +   P +   L +LR+L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667
           R+NRL  +    F   S L  LD+ EN++V  +  ++ +    L  L +  N        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL 727
               L SL+ L +   +L  +IP                       A S           
Sbjct: 147 AFSGLNSLEQLTLEKCNL-TSIPT---------------------EALSH---------- 174

Query: 728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIG 786
                       L+ +  + +   N +  I       L  L+ L +SH  +   +  N  
Sbjct: 175 ------------LHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221

Query: 787 VMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSST 833
              ++ SL  +   L+  +P     +L +L +LNLS N ++  I  S 
Sbjct: 222 YGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 91.7 bits (228), Expect = 2e-19
 Identities = 57/344 (16%), Positives = 110/344 (31%), Gaps = 72/344 (20%)

Query: 346 ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
           E   L L   +I     ++   F  L  L L+ N +    P +   + NL +L L +N+L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQ 465
              +    F  L+ L     + N              ++ +L               Q  
Sbjct: 93  K-LIPLGVFTGLSNLTKLDISEN--------------KIVILL----------DYMFQDL 127

Query: 466 KKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLL 525
             L  L++    +     RAF                                   SL  
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSG-------------------------------LNSL-- 154

Query: 526 GSIFDLSNNALS----GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTL 581
                L    L+     ++ HL          +  L+L   + +      +    RL+ L
Sbjct: 155 -EQLTLEKCNLTSIPTEALSHL--------HGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 582 NLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641
            + +  +  ++  +     +L SL++ +  L+ V   + ++   L  L++  N +  +I 
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIE 264

Query: 642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
             +     RL  + L   +     P     L  L++L+V+ N L
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 90.2 bits (224), Expect = 6e-19
 Identities = 77/428 (17%), Positives = 133/428 (31%), Gaps = 111/428 (25%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            +    +     +F   +P  +   T  + LDL  N+  +      +    LE L L +N
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
            +   +     +NL +++ L L  N               +L    +             
Sbjct: 67  IVS-AVEPGAFNNLFNLRTLGLRSN---------------RLKLIPL------------- 97

Query: 337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE 396
           G+F+G     L  L +          N++       F  L N                L+
Sbjct: 98  GVFTGLSN--LTKLDISE--------NKIVILLDYMFQDLYN----------------LK 131

Query: 397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP 456
           SL++ +N L   +S   F  L  L                          L L  C+L  
Sbjct: 132 SLEVGDNDLV-YISHRAFSGLNSL------------------------EQLTLEKCNLTS 166

Query: 457 RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMP 516
                L     L  L +    I+  I    +  +++   L +S                 
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPY------------L 213

Query: 517 LIITPSLLLG---SIFDLSNNALS----GSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
             +TP+ L G   +   +++  L+     ++ HL          + FL LS N  S    
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL--------VYLRFLNLSYNPISTIEG 265

Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
                  RL+ + L         P +   L  LR LN+  N+L+ +  + F +   LE L
Sbjct: 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325

Query: 630 DVGENELV 637
            +  N L 
Sbjct: 326 ILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 7e-08
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 29/147 (19%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
           + P+ L   +L  L ++  +   +     +  LV LR+LNLS    + +    L  L  L
Sbjct: 216 MTPNCLYGLNLTSLSITHCNLTAVP-YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 145 QYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC 204
           Q + L G         ++ +   +                        L+ L+ L +S  
Sbjct: 275 QEIQLVG-------GQLAVVEPYAF---------------------RGLNYLRVLNVSGN 306

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQ 231
           +L         +  +L TL L  N   
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLA 333

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  119 bits (300), Expect = 2e-28
 Identities = 81/502 (16%), Positives = 154/502 (30%), Gaps = 67/502 (13%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
           +  + +  K  K++   L         +  ++  LDLSGN       + L   T L+ L+
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI 308
           L SN         L  L+ L  L L +N +Q       L    SI+ L  + N       
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANN------- 109

Query: 309 PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
                    ++  S                  G      +++YL   +I        G  
Sbjct: 110 --------NISRVS-------------CSRGQG-----KKNIYLANNKITMLRDLDEGCR 143

Query: 369 KRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
            R+ +L L  N++D  +          LE L+L  N +     ++ F  L  L   L++ 
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL--DLSS- 200

Query: 428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487
           N L   + P +     +T + LR+  L       L+  + L   D+          R F+
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQG 547
           +   +   +     +    +   +     +            DL        I       
Sbjct: 259 SKNQRVQTVAKQTVK---KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALK---- 311

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
               K    L    +     +     N  R R ++     +   +        +  +L  
Sbjct: 312 ---RKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQ 367

Query: 608 RNNRLSGVIPTSFKNFSILEAL---DVGENELVGSIPTWIGERFSRLMILILRSNKF-HG 663
           +   L   +    +  + L+      VG+ EL  +      E  S L +L     ++   
Sbjct: 368 KKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT-----EEQSPLQLLRAIVKRYEEM 422

Query: 664 DFPIQLCRLASLQILDVAYNSL 685
               Q  +  +++  D+  +  
Sbjct: 423 YVEQQSVQNNAIRDWDMYQHKE 444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (293), Expect = 1e-27
 Identities = 55/402 (13%), Positives = 122/402 (30%), Gaps = 33/402 (8%)

Query: 90  LELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDL 149
                     ++ +  +         S  N++ L+LS    + +    L   + L+ L+L
Sbjct: 7   QNGNRYKIEKVTDSSLKQAL-ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 150 SGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF 209
           S             L  LS L  L ++   + +       +    S++ L  +   +   
Sbjct: 66  SSNVL----YETLDLESLSTLRTLDLNNNYVQE-------LLVGPSIETLHAANNNISRV 114

Query: 210 PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWL-SKLNDL 268
                +       + L+ N+         G  + +++LDL  N+ ++     L +  + L
Sbjct: 115 S---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
           E L+L+ N +  D+          ++ L LS N +L   +   F     +T  S+ + KL
Sbjct: 172 EHLNLQYNFIY-DVKGQV--VFAKLKTLDLSSN-KL-AFMGPEFQSAAGVTWISLRNNKL 226

Query: 329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
              I + L          LE   LRG       T +    K      ++   +      +
Sbjct: 227 V-LIEKALRFSQ-----NLEHFDLRGNGF-HCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKL----VSFLANANSLIFKINPNWVPPFQL 444
             +                 +       L  L     + L+   S   ++        + 
Sbjct: 280 EEECTVPTLGHYGAYCCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 445 TVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486
             ++                ++    L+     + +++    
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  116 bits (291), Expect = 2e-27
 Identities = 74/484 (15%), Positives = 144/484 (29%), Gaps = 29/484 (5%)

Query: 134 IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSL 193
           I     N +  +   ++     L     S       ++ L +S   LS+ S +   +   
Sbjct: 2   IHEIKQNGNRYKIEKVT--DSSLKQALASLRQSAWNVKELDLSGNPLSQISAA--DLAPF 57

Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
             L+ L LS   L+    L   + S+L TLDL+ N         L    S++ L   +N 
Sbjct: 58  TKLELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
            +             + + L +N++   +  L     + +Q L L  N+           
Sbjct: 111 ISRVSCSRGQG---KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA 166

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF 373
               L   ++    +         +    V  +L++L L   ++   +  +      + +
Sbjct: 167 SSDTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTW 218

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFK 433
           + L NN++   I  +L    NLE  DL  N  +       F    ++ +        +  
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

Query: 434 INPNWVPPFQLTVLELRSCHLGPR--FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
            N        L       C   P       + L++K + L       ++++     N   
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR 337

Query: 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSI-FHLICQGENF 550
           Q   ++    Q    V    +      IT      ++ +  +N            Q    
Sbjct: 338 Q-REIDALKEQY-RTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395

Query: 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN 610
              ++      +                       NN      M     T L   N R  
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLK 455

Query: 611 RLSG 614
           +L+G
Sbjct: 456 KLNG 459

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  109 bits (275), Expect = 3e-25
 Identities = 54/418 (12%), Positives = 115/418 (27%), Gaps = 22/418 (5%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
             L  L  L  LDL+ N  Q +          ++  L+ +    + +           + 
Sbjct: 74  LDLESLSTLRTLDLNNNYVQELL------VGPSIETLHAANNNISRV---SCSRGQGKKN 124

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           + L+    ++           S +++L +    +   + + L   S  +L+ L L +  +
Sbjct: 125 IYLA--NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI 181

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
           +         F+ L TLDLS N+    +     +   +  + L +N+    +   L    
Sbjct: 182 YDVK--GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL-VLIEKALRFSQ 237

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMAST 326
           +LE   L  N                +Q +      +L G+              +    
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
            L    ++ L         E   L  +G      L  +     R   +     Q    I 
Sbjct: 298 DLPAPFADRLIALK---RKEHALLSGQG-SETERLECERENQARQREIDALKEQYRTVID 353

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV 446
               +     +L+     L+            +L   L  A   I   +          +
Sbjct: 354 QVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

Query: 447 LELRSCHLGPRFPLWLQLQKKLNDLDISSTRISD-KIPRAFWNSIFQYYYLNVSGNQI 503
             +   +              + D D+   + +      A    +     L ++    
Sbjct: 413 RAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 1e-23
 Identities = 55/405 (13%), Positives = 122/405 (30%), Gaps = 36/405 (8%)

Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
           I     N    K   +  +    A+        +++ L L  N L   IS+  L   T +
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 294 QKLLLSWNDELGGKI--PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLY 351
           + L LS N      +        L  L +  + +  + +     L +        +E+L+
Sbjct: 61  ELLNLSSN-----VLYETLDLESLSTLRTLDLNNNYVQE-----LLVGP-----SIETLH 105

Query: 352 LRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSE 411
                I   +     + +    + L+NN++     L  G  + ++ LDL  N+++     
Sbjct: 106 AANNNI-SRV--SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 412 IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDL 471
               +   L       N +        V   +L  L+L S  L        Q    +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 472 DISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDL 531
            + + ++   I +A   S     + ++ GN            ++    + +  + ++   
Sbjct: 220 SLRNNKLVL-IEKALRFSQ-NLEHFDLRGNGF-------HCGTLRDFFSKNQRVQTVAKQ 270

Query: 532 SNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS 591
           +   L+G                   +     F++ +    +       L+   +     
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA--LKRKEHALLSGQGSETE-R 327

Query: 592 LPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL 636
           L          R ++    +   VI            L+  +  L
Sbjct: 328 LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.1 bits (239), Expect = 8e-21
 Identities = 64/479 (13%), Positives = 142/479 (29%), Gaps = 81/479 (16%)

Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS 429
           R     ++++ +  ++        N++ LDLS N L+  +S       TKL     ++N 
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNV 69

Query: 430 LIFKINPNWVPPF----QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA 485
           L                 L  L+L + ++       L +   +  L  ++  IS      
Sbjct: 70  LYE------TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCSR 118

Query: 486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLIC 545
                     + ++ N+I   +   D      +           DL  N +    F  + 
Sbjct: 119 GQGKKN----IYLANNKI-TMLRDLDEGCRSRVQY--------LDLKLNEIDTVNFAELA 165

Query: 546 QGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605
                S  +E L L  N   + +    + + +L+TL+L +N     +     +   +  +
Sbjct: 166 AS---SDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF 665
           +LRNN+L  +I  + +    LE  D+  N            +  R+  +  ++ K     
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 666 PIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT 725
             + C +    +              C  +                              
Sbjct: 279 NEEECTV--PTLGHYGAY--------CCEDLP---------------------------- 300

Query: 726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 785
                 F     ++     ++     + +  +  E  N    + ++     +   I    
Sbjct: 301 ----APFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 786 GVMRSIESLDFSANQLSGQIP---QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDAS 841
              ++  +L+     L  Q+    ++ + L       +    L       + LQ   A 
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI 415

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 93.8 bits (233), Expect = 4e-20
 Identities = 60/322 (18%), Positives = 120/322 (37%), Gaps = 42/322 (13%)

Query: 567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSIL 626
            I +   N  R +   + +++   +L     +  +++ L+L  N LS +       F+ L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL 686
           E L++  N L  ++        S L  L L +N        +L    S++ L  A N+ +
Sbjct: 61  ELLNLSSNVLYETLDLE---SLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNN-I 111

Query: 687 GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSI 746
             +              S  Q    +Y    +NKI     L             + V+ +
Sbjct: 112 SRVS------------CSRGQGKKNIYL--ANNKITMLRDLDEGC--------RSRVQYL 149

Query: 747 DISMNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 805
           D+ +N            +   L+ LNL +N     +   +     +++LD S+N+L+  +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-FM 206

Query: 806 PQSMSNLSFLNYLNLSNNNLN---GEIPSSTQLQSFDASSFAGNDL-CGAPLSSCTEKNA 861
                + + + +++L NN L      +  S  L+ FD     GN   CG      ++   
Sbjct: 207 GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLR---GNGFHCGTLRDFFSKNQR 263

Query: 862 IVTDDQNRIGNEEDGDEVDWTL 883
           + T  +  +      +E + T+
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTV 285

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.5 bits (170), Expect = 2e-12
 Identities = 31/254 (12%), Positives = 64/254 (25%), Gaps = 7/254 (2%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL-GNLS 142
            + P       +  + L  N      I K L    NL + +L    F             
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

Query: 143 NLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLS 202
            +Q +    V  +L  +     +  +L  +      +L       L+         L   
Sbjct: 263 RVQTVAKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 203 FCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWL 262
             E          N +    +D    Q++  I        +   L+      +  V    
Sbjct: 322 GSETERLE-CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 263 SKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFS 322
               +L+    +   +         +  + +Q L           +     +   +  + 
Sbjct: 381 RAHAELDGTLQQ--AVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

Query: 323 MASTKLSQDISEIL 336
           M   K +Q   E  
Sbjct: 439 MYQHKETQLAEENA 452

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (281), Expect = 1e-26
 Identities = 58/323 (17%), Positives = 114/323 (35%), Gaps = 30/323 (9%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
           I+ +L        + +           + + +L N + +    +    +    L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 145 QYLDLSG-VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSF 203
           + L+L+     E+        +    ++ LY+ F  +      +    ++  L  L L  
Sbjct: 72  ELLNLNDLQIEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLER 126

Query: 204 CELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS 263
            +L   P     N   LTTL +S N  +          TSL++L L SN+     L  + 
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186

Query: 264 KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFS 322
               L   ++  N L        L    ++++L  S N      I         +LT   
Sbjct: 187 S---LFHANVSYNLLS------TLAIPIAVEELDASHN-----SINVVRGPVNVELTILK 232

Query: 323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD 382
           +    L+                 L  + L   ++   + +   + +RL  L +SNN++ 
Sbjct: 233 LQHNNLTD-----TAWLLNYPG--LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 285

Query: 383 GSIPLSLGQMANLESLDLSNNKL 405
            ++ L    +  L+ LDLS+N L
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHL 307

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 3e-25
 Identities = 71/424 (16%), Positives = 139/424 (32%), Gaps = 88/424 (20%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           +       ++ +       +        ++   +    +  +    + L +   ++ L+L
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP 309
              Q         +  + ++ L +  N ++  +      N+  +  L+L  N +L     
Sbjct: 77  NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN-DLSSLPR 134

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369
             F    KLT+ SM++  L + I +    F    +  L++L L   ++       L    
Sbjct: 135 GIFHNTPKLTTLSMSNNNLER-IED--DTFQATTS--LQNLQLSSNRL---THVDLSLIP 186

Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS 429
            L    +S N +      +L     +E LD S+N +N  V     V LT L         
Sbjct: 187 SLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNVELTIL--------- 231

Query: 430 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNS 489
              K+  N      LT               WL     L ++D+S   +  KI    +  
Sbjct: 232 ---KLQHN-----NLTDTA------------WLLNYPGLVEVDLSYNELE-KIMYHPFVK 270

Query: 490 IFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGEN 549
           + +   L +S N++                               AL+     +      
Sbjct: 271 MQRLERLYISNNRL------------------------------VALNLYGQPI------ 294

Query: 550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRN 609
               ++ L LS NH    +      + RL  L L +N+   +L   + T  +L++L L +
Sbjct: 295 --PTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSH 348

Query: 610 NRLS 613
           N   
Sbjct: 349 NDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 4e-21
 Identities = 67/384 (17%), Positives = 135/384 (35%), Gaps = 51/384 (13%)

Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQ 367
           I ++    C           +     ++   F        + +  +   +       L  
Sbjct: 13  IDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
           F+++  L L++ Q++     +      ++ L +  N +   +    F N+  L   +   
Sbjct: 68  FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLER 126

Query: 428 NSL------IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDK 481
           N L      IF   P       LT L + + +L        Q    L +L +SS R++  
Sbjct: 127 NDLSSLPRGIFHNTPK------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180

Query: 482 IPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIF 541
                 +     ++ NVS N +             L I  ++      D S+N+++  + 
Sbjct: 181 DLSLIPSL----FHANVSYNLL-----------STLAIPIAV---EELDASHNSIN-VV- 220

Query: 542 HLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS 601
                    +  +  LKL  N+ ++      +N+P L  ++L  N     +      +  
Sbjct: 221 -----RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273

Query: 602 LRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF 661
           L  L + NNRL   +    +    L+ LD+  N L+  +     + F RL  L L  N  
Sbjct: 274 LERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYLDHNSI 330

Query: 662 HGDFPIQLCRLASLQILDVAYNSL 685
                ++L    +L+ L +++N  
Sbjct: 331 V---TLKLSTHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.0 bits (229), Expect = 6e-20
 Identities = 58/340 (17%), Positives = 123/340 (36%), Gaps = 33/340 (9%)

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS-KNIEFLKLSTNHFSEGIPDC 571
           P  P        L       +  +      +    E+ +  N + +    +   +     
Sbjct: 5   PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL 64

Query: 572 WMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631
             ++ ++  LNL +         +     +++ L +  N +  + P  F+N  +L  L +
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124

Query: 632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR 691
             N+L  S+P  I     +L  L + +N              SLQ L ++ N L   +  
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD- 181

Query: 692 CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV-MKGFLVEYNSILNL-------V 743
            ++   ++  A+ S             N +      + ++     +NSI  +       +
Sbjct: 182 -LSLIPSLFHANVSY------------NLLSTLAIPIAVEELDASHNSINVVRGPVNVEL 228

Query: 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLS 802
             + +  NN + +    + N  GL  ++LS+N    +I  +    M+ +E L  S N+L 
Sbjct: 229 TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

Query: 803 GQIPQSMSNLSFLNYLNLSNNNL---NGEIPSSTQLQSFD 839
             +      +  L  L+LS+N+L       P   +L++  
Sbjct: 286 -ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 52/436 (11%), Positives = 117/436 (26%), Gaps = 110/436 (25%)

Query: 371 LNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
              + +     D         + N + +   N+ +   +      +              
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR------------ 69

Query: 431 IFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSI 490
                       Q+ +L L    +             +  L +    I    P  F N  
Sbjct: 70  ------------QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117

Query: 491 FQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG----SIFDLSNNALSGSIFHLICQ 546
                L +  N +               +   +       +   +SNN L   I     Q
Sbjct: 118 -LLTVLVLERNDLS-------------SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
               + +++ L+LS+N  +  +    +  P L   N+  N  +     ++    ++  L+
Sbjct: 163 A---TTSLQNLQLSSNRLTH-VDLSLI--PSLFHANVSYNLLS-----TLAIPIAVEELD 211

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
             +N ++ V          L  L +  N L       +   +  L+ + L  N+      
Sbjct: 212 ASHNSINVVRGPVNVE---LTILKLQHNNLT-DTAWLLN--YPGLVEVDLSYNELEKIMY 265

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
               ++  L+ L ++ N L   +         +                           
Sbjct: 266 HPFVKMQRLERLYISNNRL-VALNLYGQPIPTL--------------------------- 297

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 786
                            + +D+S N+    +         L++L L HN     +   + 
Sbjct: 298 -----------------KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 336

Query: 787 VMRSIESLDFSANQLS 802
              ++++L  S N   
Sbjct: 337 THHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 37/184 (20%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
              L  L L  N+         L +   L  ++LS      ++ H    +  L+ L +S 
Sbjct: 225 NVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                           + L  L +    +              +LK L LS   L H   
Sbjct: 282 ----------------NRLVALNLYGQPIP-------------TLKVLDLSHNHLLHVE- 311

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLSKLNDLEV 270
            +   F  L  L L  N     +   L    +LK+L L  N ++ +++      +    V
Sbjct: 312 RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAV 368

Query: 271 LSLE 274
              +
Sbjct: 369 DDAD 372

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 38/267 (14%), Positives = 90/267 (33%), Gaps = 77/267 (28%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
              +++              TL + + +  +N+ +  +      +F  +E L++ + ++ 
Sbjct: 23  FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
             I                                 ++Q L + +N++   +P       
Sbjct: 83  -EID------------------------TYAFAYAHTIQKLYMGFNAI-RYLPP------ 110

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
                          + F                        + L+  + +  N+ S  +
Sbjct: 111 ---------------HVFQN----------------------VPLLTVLVLERNDLS-SL 132

Query: 758 PVEV-TNLQGLQSLNLSHNLFTGRIPDNIGV-MRSIESLDFSANQLSGQIPQSMSNLSFL 815
           P  +  N   L +L++S+N    RI D+      S+++L  S+N+L+  +   +S +  L
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSL 188

Query: 816 NYLNLSNNNLNGEIPSSTQLQSFDASS 842
            + N+S N L+  +     ++  DAS 
Sbjct: 189 FHANVSYNLLS-TLAIPIAVEELDASH 214

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  102 bits (256), Expect = 6e-24
 Identities = 57/211 (27%), Positives = 79/211 (37%), Gaps = 9/211 (4%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLS--QARFTGMIPHQLGNLSNLQYLDLSG 151
               L+L  N  Q +        L  L  L+LS     F G         ++L+YLDLS 
Sbjct: 29  SATRLELESNKLQSLP-HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                 +       GL  LEHL     NL + S+   V  SL +L  L +S         
Sbjct: 88  NGVITMSSN---FLGLEQLEHLDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFN 143

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
                 SSL  L ++GN FQ          L +L  LDL   Q         + L+ L+V
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           L++  N     + +     L S+Q L  S N
Sbjct: 204 LNMSHNNFF-SLDTFPYKCLNSLQVLDYSLN 233

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (251), Expect = 3e-23
 Identities = 56/218 (25%), Positives = 87/218 (39%), Gaps = 10/218 (4%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKY-LASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
              +L  L  L LS N                +L+YL+LS       +      L  L++
Sbjct: 47  VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC-E 205
           LD      +  +E  S    L  L +L IS  +   A + +   N L SL+ LK++    
Sbjct: 106 LDFQHSNLKQMSEF-SVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSF 162

Query: 206 LHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSK 264
             +F         +LT LDLS  Q + Q+      +L+SL+ L++  N F S        
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221

Query: 265 LNDLEVLSLEDNRLQGDISSLGLDNL-TSIQKLLLSWN 301
           LN L+VL    N +        L +  +S+  L L+ N
Sbjct: 222 LNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 55/293 (18%), Positives = 90/293 (30%), Gaps = 44/293 (15%)

Query: 119 NLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYISF 177
           +   +  +    T  +P  +   S+   L+L       L          L+ L  L +S 
Sbjct: 8   SGTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSS 61

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
             LS             SLK L LSF  +      +      L  LD   +  + Q+   
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLK-QMSEF 119

Query: 238 --LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQK 295
               +L +L +LD+       A  G  + L+ LEVL +  N  Q +        L ++  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 296 LLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC 355
           L LS                 +L   S                F+   +  L+ L +   
Sbjct: 180 LDLSQC---------------QLEQLSP-------------TAFNSLSS--LQVLNMSHN 209

Query: 356 QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL--GQMANLESLDLSNNKLN 406
             F   T        L  L  S N +  +          ++L  L+L+ N   
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.8 bits (226), Expect = 5e-20
 Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 7/196 (3%)

Query: 86  NPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL-GNLSNL 144
           + S      L +LDLS N      +      L  L +L+   +    M    +  +L NL
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 145 QYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC 204
            YLD+S  +           +GLS LE L ++  N  + +    +   L +L  L LS C
Sbjct: 129 IYLDIS--HTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQC 185

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK 264
           +L      +  + SSL  L++S N F          L SL+ LD   N   ++    L  
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 265 LND-LEVLSLEDNRLQ 279
               L  L+L  N   
Sbjct: 246 FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 8/174 (4%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNL 144
           ++ + L L+ L HLD   ++ + +       SL NL YL++S              LS+L
Sbjct: 93  MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152

Query: 145 QYLDLSGVYFELHAETISW--LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLS 202
           + L ++G       E       + L  L  L +S   L + S +    NSL SL+ L +S
Sbjct: 153 EVLKMAG---NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF--NSLSSLQVLNMS 207

Query: 203 FCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNL-TSLKHLDLYSNQFN 255
                          +SL  LD S N         L +  +SL  L+L  N F 
Sbjct: 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 56/295 (18%), Positives = 93/295 (31%), Gaps = 52/295 (17%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
           S T +  +       +P+ +   +S   L+L SN+  S   G   KL  L  LSL  N L
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 279 Q-GDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG 337
                 S      TS++ L LS+N                + + S     L Q       
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFN---------------GVITMSSNFLGLEQ------- 102

Query: 338 IFSGCVAYELESLYLRGCQI--------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL 389
                    LE L  +   +        F  L N       L +L +S+     +     
Sbjct: 103 ---------LEHLDFQHSNLKQMSEFSVFLSLRN-------LIYLDISHTHTRVAFNGIF 146

Query: 390 GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPP-FQLTVLE 448
             +++LE L ++ N          F  L  L     +    + +++P        L VL 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN 205

Query: 449 LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           +   +         +    L  LD S   I     +   +      +LN++ N  
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 56/284 (19%), Positives = 97/284 (34%), Gaps = 51/284 (17%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT--GSLPMSIGTLTSLRSL 605
                +   L+L +N         +    +L  L+L +N  +  G    S    TSL+ L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF 665
           +L  N +   + ++F     LE LD   + L       +      L+ L +        F
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 666 PIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT 725
                 L+SL++L +A NS                              F+         
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLP---------------------DIFTE-------- 173

Query: 726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDN 784
                         L  +  +D+S      ++      +L  LQ LN+SHN F   +   
Sbjct: 174 --------------LRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTF 217

Query: 785 I-GVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLN 826
               + S++ LD+S N +     Q + +  S L +LNL+ N+  
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 53/272 (19%), Positives = 86/272 (31%), Gaps = 57/272 (20%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL-V 637
             +   +   T S+P  I   +S   L L +N+L  +    F   + L  L +  N L  
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
               +      + L  L L  N            L  L+ LD  +++L            
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS----- 120

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
                            F                        L  +  +DIS  +     
Sbjct: 121 ----------------VFLS----------------------LRNLIYLDISHTHTR-VA 141

Query: 758 PVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFL 815
              +   L  L+ L ++ N F      +I   +R++  LD S  QL    P + ++LS L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 816 NYLNLSNNNLNGEIPSS-----TQLQSFDASS 842
             LN+S+NN    + +        LQ  D S 
Sbjct: 202 QVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSL 232

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 62/286 (21%), Positives = 101/286 (35%), Gaps = 47/286 (16%)

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
           ++   L+L +NKL  ++    F  LT                        QLT L L S 
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLT------------------------QLTKLSLSSN 62

Query: 453 HLGPRFPLWLQLQK--KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
            L  +            L  LD+S   +   +   F     Q  +L+   + +     K 
Sbjct: 63  GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLE-QLEHLDFQHSNL-----KQ 115

Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI-P 569
            S     +   +L+     D+S+       F+ I  G     ++E LK++ N F E   P
Sbjct: 116 MSEFSVFLSLRNLI---YLDISHTHTR-VAFNGIFNG---LSSLEVLKMAGNSFQENFLP 168

Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
           D +     L  L+L         P +  +L+SL+ LN+ +N    +    +K  + L+ L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL 675
           D   N ++ S    +    S L  L L  N F        C   S 
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT-----CEHQSF 269

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 5e-12
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 530 DLSNNALSGSIFHLICQGENFS-KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNF 588
            LS+N LS   F   C   +F   ++++L LS N     +   ++   +L  L+  ++N 
Sbjct: 58  SLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 113

Query: 589 TGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGER 647
                 S+  +L +L  L++ +          F   S LE L +  N    +    I   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 648 FSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
              L  L L   +     P     L+SLQ+L++++N+ 
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 42/218 (19%), Positives = 80/218 (36%), Gaps = 18/218 (8%)

Query: 471 LDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFD 530
           L++ S ++       F + + Q   L++S N +          S     T SL      D
Sbjct: 33  LELESNKLQSLPHGVF-DKLTQLTKLSLSSNGLS----FKGCCSQSDFGTTSL---KYLD 84

Query: 531 LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC--WMNWPRLRTLNLGNNNF 588
           LS N +       +       + +E L    ++  + + +   +++   L  L++ + + 
Sbjct: 85  LSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFLSLRNLIYLDISHTHT 138

Query: 589 TGSLPMSIGTLTSLRSLNLRNNR-LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGER 647
             +       L+SL  L +  N      +P  F     L  LD+ + +L   +       
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS 197

Query: 648 FSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
            S L +L +  N F          L SLQ+LD + N +
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  104 bits (261), Expect = 1e-23
 Identities = 74/421 (17%), Positives = 139/421 (33%), Gaps = 60/421 (14%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
           S  +L  L  LD   +    +     +  L  L  L  +    T +    L   +NL YL
Sbjct: 37  SEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYL 90

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
                        +  ++ L+ L +L      L+K     L ++    L  L  +   L 
Sbjct: 91  ACDSNKL----TNLD-VTPLTKLTYLNCDTNKLTK-----LDVSQNPLLTYLNCARNTLT 140

Query: 208 HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLND 267
              +   ++ + LT LD   N+   ++   +   T L  LD   N+        +S+   
Sbjct: 141 EIDV---SHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD---VSQNKL 192

Query: 268 LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMAST 326
           L  L+ + N     I+ L L+    +  L  S N     K+       L +LT F  +  
Sbjct: 193 LNRLNCDTNN----ITKLDLNQNIQLTFLDCSSN-----KLTEIDVTPLTQLTYFDCSVN 243

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP 386
            L++     L         +L +L+     +   L   L    +L +      +    + 
Sbjct: 244 PLTELDVSTLS--------KLTTLHCIQTDL---LEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTV 446
           ++      L  LD     +    +E+      KLV    N   L  +++ +     +L  
Sbjct: 293 VT--HNTQLYLLDCQAAGI----TELDLSQNPKLVYLYLNNTELT-ELDVSHNT--KLKS 343

Query: 447 LELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY----YLNVSGNQ 502
           L   + H+   F    ++   LN+   +  +          N+          L+  GN 
Sbjct: 344 LSCVNAHI-QDFSSVGKI-PALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNP 401

Query: 503 I 503
           +
Sbjct: 402 M 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 68/443 (15%), Positives = 132/443 (29%), Gaps = 89/443 (20%)

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
                 +  E+     +S    ++LT+LD   +         +  LT L  L   SN   
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNIT 77

Query: 256 SAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL 315
           +     LS+  +L  L+ + N+L    ++L +  LT +  L    N            + 
Sbjct: 78  TLD---LSQNTNLTYLACDSNKL----TNLDVTPLTKLTYLNCDTNK----LTKLDVSQN 126

Query: 316 CKLTSFSMASTKLSQ-DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
             LT  + A   L++ D+S            +L  L     +    L   +    +L  L
Sbjct: 127 PLLTYLNCARNTLTEIDVSHNT---------QLTELDCHLNKKITKLD--VTPQTQLTTL 175

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKI 434
             S N++     L + Q   L  L+   N +    +++      +L     ++N      
Sbjct: 176 DCSFNKITE---LDVSQNKLLNRLNCDTNNI----TKLDLNQNIQLTFLDCSSN------ 222

Query: 435 NPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY 494
                   +LT +++                 +L   D S   +++              
Sbjct: 223 --------KLTEIDVTPL-------------TQLTYFDCSVNPLTELDVSTLSK----LT 257

Query: 495 YLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNI 554
            L+     +             + +T +  L          +              +  +
Sbjct: 258 TLHCIQTDLLE-----------IDLTHNTQLIYFQAEGCRKIKELDVTH-------NTQL 299

Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG 614
             L       +E +       P+L  L L N   T  L   +   T L+SL+  N  +  
Sbjct: 300 YLLDCQAAGITE-LDLS--QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD 353

Query: 615 VIPTSFKNFSILEALDVGENELV 637
              +S      L      E + +
Sbjct: 354 F--SSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 74.3 bits (183), Expect = 6e-14
 Identities = 71/514 (13%), Positives = 149/514 (28%), Gaps = 126/514 (24%)

Query: 359 GHLTNQLGQFKRLNF--LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVN 416
           G   +    F   NF     +  +M  +  +S  Q+A L SLD  N+ +   ++ I    
Sbjct: 6   GQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIE--K 62

Query: 417 LTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST 476
           LT L   +  +N               +T L+L                  L  L   S 
Sbjct: 63  LTGLTKLICTSN--------------NITTLDLSQN-------------TNLTYLACDSN 95

Query: 477 RISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNAL 536
           ++++ +       +    YLN   N++           + +   P L   +  + + N L
Sbjct: 96  KLTN-LDVTPLTKL---TYLNCDTNKLT---------KLDVSQNPLL---TYLNCARNTL 139

Query: 537 SGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI 596
           +     +       +  +  L    N     +        +L TL+   N  T    + +
Sbjct: 140 T----EIDVSH---NTQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKITE---LDV 187

Query: 597 GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILIL 656
                L  LN   N ++ +          L  LD   N+L   I        ++L     
Sbjct: 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EIDV---TPLTQLTYFDC 240

Query: 657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS 716
             N       + +  L+ L  L      L                               
Sbjct: 241 SVNPLT---ELDVSTLSKLTTLHCIQTDL------------------------------- 266

Query: 717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNL 776
                     +           + +  + I            ++VT+   L  L+     
Sbjct: 267 --------LEI----------DLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAG 308

Query: 777 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 836
            T     ++     +  L  +  +L+ ++   +S+ + L  L+  N ++  +  S  ++ 
Sbjct: 309 IT---ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIP 361

Query: 837 SFDASSFAGNDLCGAPLSSCTEKNAIVTDDQNRI 870
           + + +  A       P  + T  +  +    + +
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  105 bits (264), Expect = 1e-23
 Identities = 75/383 (19%), Positives = 124/383 (32%), Gaps = 84/383 (21%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
             H+  L +  N+     +P   A    LR L +S  + T  +P     L  L       
Sbjct: 60  PAHITTLVIPDNNLT--SLP---ALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPL 113

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
            +        +  SGL  L        +L               L+EL +S  +L   P 
Sbjct: 114 THLP------ALPSGLCKLWIFGNQLTSLP---------VLPPGLQELSVSDNQLASLP- 157

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK-LNDLEV 270
              A  S L  L    NQ    +P     L     L +  NQ  S     L    ++L  
Sbjct: 158 ---ALPSELCKLWAYNNQLT-SLPMLPSGLQE---LSVSDNQLAS-----LPTLPSELYK 205

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ 330
           L   +NRL    +SL     + +++L++S N               +LTS       L  
Sbjct: 206 LWAYNNRL----TSL-PALPSGLKELIVSGN---------------RLTS-------LPV 238

Query: 331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
             S            EL+ L + G ++   L         L+   +  NQ+   +P SL 
Sbjct: 239 LPS------------ELKELMVSGNRL-TSLPMLPSGLLSLS---VYRNQLT-RLPESLI 281

Query: 391 QMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLI-FKINPNWVPPFQLTVLEL 449
            +++  +++L  N L    SE     L ++ S    +  +I F +     P     +   
Sbjct: 282 HLSSETTVNLEGNPL----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337

Query: 450 RSCHLGPRFPLWLQLQKKLNDLD 472
            +  L P          + +   
Sbjct: 338 AADWLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 91.1 bits (226), Expect = 5e-19
 Identities = 63/331 (19%), Positives = 106/331 (32%), Gaps = 54/331 (16%)

Query: 167 LSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLS 226
            +    L +    L+   D L        +  L +    L   P    A    L TL++S
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPA-----HITTLVIPDNNLTSLP----ALPPELRTLEVS 89

Query: 227 GNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG 286
           GNQ    +P     L  L           +         + L  L +  N+L   +  L 
Sbjct: 90  GNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLT-SLPVL- 139

Query: 287 LDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
                 +Q+L +S N      +P    +LCKL +++   T L    S             
Sbjct: 140 ---PPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLPMLPS------------G 182

Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
           L+ L +   Q+   L     +  +L      NN++  S+P        L+ L +S N+L 
Sbjct: 183 LQELSVSDNQL-ASLPTLPSELYKLW---AYNNRLT-SLPALPS---GLKELIVSGNRLT 234

Query: 407 GTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK 466
                     L +L   ++  N L     P       L  L +    L  R P  L    
Sbjct: 235 SLPVLPS--ELKEL--MVSG-NRL--TSLPMLPS--GLLSLSVYRNQLT-RLPESLIHLS 284

Query: 467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLN 497
               +++    +S++  +A         Y  
Sbjct: 285 SETTVNLEGNPLSERTLQALREITSAPGYSG 315

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 9e-19
 Identities = 73/394 (18%), Positives = 129/394 (32%), Gaps = 103/394 (26%)

Query: 443 QLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
              VL +    L    P    L   +  L I    ++  +P        +   L VSGNQ
Sbjct: 41  GNAVLNVGESGL-TTLPD--CLPAHITTLVIPDNNLTS-LP----ALPPELRTLEVSGNQ 92

Query: 503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN 562
           +          S+P++    L L SIF      L                 +  L +  N
Sbjct: 93  LT---------SLPVLPPGLLEL-SIFSNPLTHLPALP-----------SGLCKLWIFGN 131

Query: 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
             +  +P        L+ L++ +N    SLP        L  L   NN+L+  +P     
Sbjct: 132 QLTS-LPVLPPG---LQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLT-SLPMLPSG 182

Query: 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAY 682
              L+ L V +N+L  S+PT        L  L   +N+     P        L+ L V+ 
Sbjct: 183 ---LQELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALPS---GLKELIVSG 230

Query: 683 NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNL 742
           N L  ++P                                                   L
Sbjct: 231 NRL-TSLP----------------------------------------------VLPSEL 243

Query: 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 802
            + + +S N  +  +P+      GL SL++  N  T R+P+++  + S  +++   N LS
Sbjct: 244 -KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297

Query: 803 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 836
            +  Q++  ++     +      +    S+ +  
Sbjct: 298 ERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.0 bits (218), Expect = 4e-18
 Identities = 70/412 (16%), Positives = 125/412 (30%), Gaps = 75/412 (18%)

Query: 210 PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLE 269
             + +   +    L++  +     +P  L     +  L +  N   S      +   +L 
Sbjct: 32  QKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS----LPALPPELR 84

Query: 270 VLSLEDNRLQGDISSL--GLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTK 327
            L +  N+L    +SL      L  +              +P     LCKL  F    T 
Sbjct: 85  TLEVSGNQL----TSLPVLPPGLLELSIFSNPLT-----HLPALPSGLCKLWIFGNQLTS 135

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
           L                  L+ L +   Q+   L     +  +L      NNQ+  S+P+
Sbjct: 136 LPVLPP------------GLQELSVSDNQL-ASLPALPSELCKLW---AYNNQLT-SLPM 178

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447
                  L+ L +S+N+L    +      L KL ++     SL     P    P  L  L
Sbjct: 179 LPS---GLQELSVSDNQLASLPTLPS--ELYKLWAYNNRLTSL-----PAL--PSGLKEL 226

Query: 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGV 507
            +    L    P+      +L +L +S  R++  +P            L+V  NQ+    
Sbjct: 227 IVSGNRLT-SLPVLPS---ELKELMVSGNRLTS-LP----MLPSGLLSLSVYRNQL---- 273

Query: 508 PKFDSPSMPLIIT--PSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS 565
                  +P  +    S    +  +L  N LS      + +  +       + +  +   
Sbjct: 274 -----TRLPESLIHLSSE---TTVNLEGNPLSERTLQALREITSAPGYSGPI-IRFDMAG 324

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLPM----SIGTLTSLRSLNLRNNRLS 613
              P             L         P       G   +  + +L  +RLS
Sbjct: 325 ASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 68/364 (18%), Positives = 117/364 (32%), Gaps = 84/364 (23%)

Query: 322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM 381
             A  + S+  + ++     C+      L +    +   L + L     +  L + +N +
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNL 73

Query: 382 DGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPP 441
             S+P        L +L++S N+L  ++       L +L  F      L     P    P
Sbjct: 74  T-SLPALPP---ELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHL-----PAL--P 120

Query: 442 FQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGN 501
             L  L +    L    P+       L +L +S  +++  +P        +   L    N
Sbjct: 121 SGLCKLWIFGNQLT-SLPVLPP---GLQELSVSDNQLA-SLP----ALPSELCKLWAYNN 171

Query: 502 QIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLST 561
           Q+                               +L      L           + L +S 
Sbjct: 172 QL------------------------------TSLPMLPSGL-----------QELSVSD 190

Query: 562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK 621
           N  +  +P        L  L   NN  T SLP        L+ L +  NRL+  +P    
Sbjct: 191 NQLAS-LPT---LPSELYKLWAYNNRLT-SLPALPS---GLKELIVSGNRLTS-LPVLPS 241

Query: 622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVA 681
               L+ L V  N L  S+P         L+ L +  N+     P  L  L+S   +++ 
Sbjct: 242 E---LKELMVSGNRLT-SLPMLPS----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 682 YNSL 685
            N L
Sbjct: 293 GNPL 296

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.6 bits (204), Expect = 2e-16
 Identities = 60/345 (17%), Positives = 104/345 (30%), Gaps = 53/345 (15%)

Query: 84  KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSN 143
            +      L  L                   A    L  L +   + T  +P        
Sbjct: 95  SLPVLPPGLLELSIFSNPLTHLP--------ALPSGLCKLWIFGNQLTS-LPVLPP---G 142

Query: 144 LQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSF 203
           LQ L +S           S  +  S L  L+     L+              L+EL +S 
Sbjct: 143 LQELSVSDNQLA------SLPALPSELCKLWAYNNQLTSLPM------LPSGLQELSVSD 190

Query: 204 CELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS 263
            +L   P       S L  L    N+    +P+    L     L +  N+  S       
Sbjct: 191 NQLASLP----TLPSELYKLWAYNNRLT-SLPALPSGLKE---LIVSGNRLTSLP----V 238

Query: 264 KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSM 323
             ++L+ L +  NRL     SL     + +  L +  N  L  ++P S   L   T+ ++
Sbjct: 239 LPSELKELMVSGNRLT----SLP-MLPSGLLSLSVYRNQ-L-TRLPESLIHLSSETTVNL 291

Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
               LS+         +     E+ S       I           +    L L+    D 
Sbjct: 292 EGNPLSE--------RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA--DW 341

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANAN 428
            +P   G+ A  +   +   + N     +    L++  +F+ +A 
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAG 386

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 82.2 bits (203), Expect = 3e-16
 Identities = 53/276 (19%), Positives = 90/276 (32%), Gaps = 60/276 (21%)

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
           +  C  N      LN+G +  T +LP  +     + +L + +N L+  +P        L 
Sbjct: 34  MRACLNN--GNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPE---LR 84

Query: 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
            L+V  N+L  S+P         L I                   + L  L +  N L  
Sbjct: 85  TLEVSGNQLT-SLPVLPP-GLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL-T 134

Query: 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747
           ++P                     L     DN++    SL              L   + 
Sbjct: 135 SLPVLPPGLQ-------------ELSV--SDNQL---ASL--------PALPSEL-CKLW 167

Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 807
              N  +  +P+  + LQ    L++S N     +P        +  L    N+L+  +P 
Sbjct: 168 AYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLT-SLPA 218

Query: 808 SMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFDASS 842
             S L     L +S N L   +P   ++L+    S 
Sbjct: 219 LPSGLK---ELIVSGNRLT-SLPVLPSELKELMVSG 250

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (252), Expect = 1e-23
 Identities = 50/209 (23%), Positives = 73/209 (34%), Gaps = 9/209 (4%)

Query: 95  LVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF 154
              + L GN    +       +  NL  L L       +       L+ L+ LDLS    
Sbjct: 34  SQRIFLHGNRISHVP-AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 155 --ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL 212
              +   T     GL  L  L++    L +    L     L +L+ L L    L   P  
Sbjct: 93  LRSVDPAT---FHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQALPDD 147

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
           +  +  +LT L L GN+           L SL  L L+ N+           L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           L  N L   + +  L  L ++Q L L+ N
Sbjct: 208 LFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.7 bits (218), Expect = 4e-19
 Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 10/187 (5%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYIS 176
              + + L   R + +         NL  L L       + A      +GL+LLE L +S
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA---FTGLALLEQLDLS 88

Query: 177 F-VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIP 235
               L     +    + L  L  L L  C L           ++L  L L  N  Q  +P
Sbjct: 89  DNAQLRSVDPATF--HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP 145

Query: 236 SR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ 294
                +L +L HL L+ N+ +S        L+ L+ L L  NR+   +      +L  + 
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLM 204

Query: 295 KLLLSWN 301
            L L  N
Sbjct: 205 TLYLFAN 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 4e-18
 Identities = 46/225 (20%), Positives = 71/225 (31%), Gaps = 29/225 (12%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            ++   + L GN+      +      +L  L L+SN          + L  LE L L DN
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDI 332
                +       L  +  L L         +    P  F  L  L    +    L Q +
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRC-----GLQELGPGLFRGLAALQYLYLQDNAL-QAL 144

Query: 333 SEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSI 385
            +    F       L  L+L G +I       F  L +       L+ L L  N++    
Sbjct: 145 PD--DTFRDLGN--LTHLFLHGNRISSVPERAFRGLHS-------LDRLLLHQNRVAHVH 193

Query: 386 PLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
           P +   +  L +L L  N L+  +       L  L     N N  
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 32/222 (14%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           + + + L    + H P  S     +LT L L  N       +    L  L+ LDL  N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 255 NSAV-LGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----P 309
             +V       L  L  L L+   LQ ++       L ++Q L L  N      +     
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDN-----ALQALPD 146

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI-------FGHLT 362
            +F  L  LT   +   ++   + E    F G     L+ L L   ++       F  L 
Sbjct: 147 DTFRDLGNLTHLFLHGNRI-SSVPE--RAFRGLH--SLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 363 NQLGQFKRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNN 403
                   L  L L  N +  ++P   L  +  L+ L L++N
Sbjct: 202 R-------LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 12/168 (7%)

Query: 92  LKHLVHLDLSGNDFQGIQI----PKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
           L  L  LDLS N     Q+    P     L  L  L+L +     + P     L+ LQYL
Sbjct: 79  LALLEQLDLSDNA----QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
            L      L A        L  L HL++    +S   +       LHSL  L L    + 
Sbjct: 135 YLQ--DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVA 190

Query: 208 HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
           H    +  +   L TL L  N         L  L +L++L L  N + 
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.5 bits (168), Expect = 1e-12
 Identities = 49/253 (19%), Positives = 82/253 (32%), Gaps = 48/253 (18%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              + + L  N  +     S     +L  L L +N L+ +   +F   ++LE LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
            + S+         RL  L L         P     LA+LQ L +  N+ L  +P     
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDD--- 147

Query: 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG 755
                              F                        L  +  + +  N  S 
Sbjct: 148 ------------------TFRD----------------------LGNLTHLFLHGNRIS- 166

Query: 756 EIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLS 813
            +P      L  L  L L  N     +  +    +  + +L   AN LS    ++++ L 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 814 FLNYLNLSNNNLN 826
            L YL L++N   
Sbjct: 226 ALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 50/257 (19%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
                  + + L  N  S      +     L  L L +N        +   L  L  L+L
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 608 -RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP 666
             N +L  V P +F     L  L +    L   +   +    + L  L L+ N       
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
                L +L  L +  N  + ++P                       AF G         
Sbjct: 147 DTFRDLGNLTHLFLHGN-RISSVPE---------------------RAFRG--------- 175

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI 785
                        L+ +  + +  N  +  +      +L  L +L L  N  +  +P   
Sbjct: 176 -------------LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEA 220

Query: 786 -GVMRSIESLDFSANQL 801
              +R+++ L  + N  
Sbjct: 221 LAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 53/292 (18%), Positives = 90/292 (30%), Gaps = 70/292 (23%)

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
           ++P+ +   A  + + L  N+++  V    F                             
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACR------------------------N 57

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
           LT+L L S  L             L  LD+S       +  A ++ + + + L++    +
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
                                     +L      G    L          +++L L  N 
Sbjct: 118 -------------------------QELGPGLFRG----L--------AALQYLYLQDNA 140

Query: 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNF 623
                 D + +   L  L L  N  +     +   L SL  L L  NR++ V P +F++ 
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL 675
             L  L +  N L  ++PT        L  L L  N +  D     CR   L
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCD-----CRARPL 246

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 43/269 (15%), Positives = 81/269 (30%), Gaps = 85/269 (31%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
            T +        ++P+ I    + + + L  NR+S V   SF+    L  L +  N    
Sbjct: 14  VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--- 67

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698
                         +  + +  F G        LA L+ LD++ N+ L ++         
Sbjct: 68  --------------LARIDAAAFTG--------LALLEQLDLSDNAQLRSVDP------- 98

Query: 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP 758
                           F G                      L  + ++ +       E+ 
Sbjct: 99  --------------ATFHG----------------------LGRLHTLHLDRCGLQ-ELG 121

Query: 759 VEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLN 816
             +   L  LQ L L  N     +PD+    + ++  L    N++S    ++   L  L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 817 YLNLSNNNLNGEIPSSTQLQSFDASSFAG 845
            L L  N          ++      +F  
Sbjct: 181 RLLLHQN----------RVAHVHPHAFRD 199

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 7e-23
 Identities = 56/217 (25%), Positives = 81/217 (37%), Gaps = 13/217 (5%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
           S   L+HL  L LS N  + I+       L NL  L L   R T +       LS L+ L
Sbjct: 83  SFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141

Query: 148 DLSGVYFELHAETIS--WLSGLSLLEHLYISFVN-LSKASDSLLVINSLHSLKELKLSFC 204
            L         E+I     + +  L  L +  +  LS  S+       L +L+ L L+ C
Sbjct: 142 WLRN----NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF--EGLSNLRYLNLAMC 195

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK 264
            L   P L+      L  LDLSGN      P     L  L+ L +  +Q           
Sbjct: 196 NLREIPNLT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253

Query: 265 LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           L  L  ++L  N L   +       L  ++++ L  N
Sbjct: 254 LQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 51/209 (24%), Positives = 84/209 (40%), Gaps = 9/209 (4%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
           +   L+L  N  Q I+       L +L  L LS+     +       L+NL  L+L    
Sbjct: 65  NTRLLNLHENQIQIIK-VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF--D 121

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC-ELHHFPLL 212
             L          LS L+ L++    +          N + SL+ L L     L +    
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF--NRIPSLRRLDLGELKRLSYISEG 179

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
           +    S+L  L+L+    + +IP+ L  L  L  LDL  N  ++   G    L  L+ L 
Sbjct: 180 AFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           +  +++Q  I     DNL S+ ++ L+ N
Sbjct: 238 MIQSQIQ-VIERNAFDNLQSLVEINLAHN 265

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.8 bits (236), Expect = 1e-20
 Identities = 60/268 (22%), Positives = 97/268 (36%), Gaps = 46/268 (17%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            ++   L+L  NQ Q    +   +L  L+ L L  N   +  +G  + L +L  L L DN
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDI 332
           RL   I +     L+ +++L L  N      I      +F ++  L    +   K    I
Sbjct: 123 RLT-TIPNGAFVYLSKLKELWLRNN-----PIESIPSYAFNRIPSLRRLDLGELKRLSYI 176

Query: 333 SEILGIFSGCVAYELESLYLRGCQI-----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
           SE  G F G     L  L L  C +        L         L+ L LS N +    P 
Sbjct: 177 SE--GAFEGLSN--LRYLNLAMCNLREIPNLTPLIK-------LDELDLSGNHLSAIRPG 225

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL------IFKINPNWVPP 441
           S   + +L+ L +  +++   +    F NL  LV      N+L      +F    +    
Sbjct: 226 SFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH---- 280

Query: 442 FQLTVLELRS------CHLGPRFPLWLQ 463
             L  + L        C +      W++
Sbjct: 281 --LERIHLHHNPWNCNCDILW-LSWWIK 305

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 84.0 bits (208), Expect = 4e-17
 Identities = 54/261 (20%), Positives = 101/261 (38%), Gaps = 22/261 (8%)

Query: 97  HLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-E 155
            +     + +  ++P  +++  N R LNL + +   +  +   +L +L+ L LS  +   
Sbjct: 47  KVICVRKNLR--EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 156 LHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA 215
           +        +GL+ L  L +    L+   +       L  LKEL L    +   P  +  
Sbjct: 103 IEIGA---FNGLANLNTLELFDNRLTTIPNGAF--VYLSKLKELWLRNNPIESIPSYAFN 157

Query: 216 NFSSLTTLDLSG-NQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSL 273
              SL  LDL    +    I       L++L++L+L         +  L+ L  L+ L L
Sbjct: 158 RIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLAMCNLRE--IPNLTPLIKLDELDL 214

Query: 274 EDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDIS 333
             N L   I       L  +QKL +  + ++      +F  L  L   ++A   L+  + 
Sbjct: 215 SGNHLSA-IRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTL-LP 271

Query: 334 EILGIFSGCVAYELESLYLRG 354
               +F+      LE ++L  
Sbjct: 272 H--DLFTPLHH--LERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 59/250 (23%), Positives = 91/250 (36%), Gaps = 46/250 (18%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              R LNL  N        S   L  L  L L  N +  +   +F   + L  L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
           L  +IP       S+L  L LR+N           R+ SL+ LD+     L  I      
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE---- 178

Query: 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG 755
                             AF G                      L+ +R ++++M N   
Sbjct: 179 -----------------GAFEG----------------------LSNLRYLNLAMCNLR- 198

Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 815
           EIP  +T L  L  L+LS N  +   P +   +  ++ L    +Q+      +  NL  L
Sbjct: 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 257

Query: 816 NYLNLSNNNL 825
             +NL++NNL
Sbjct: 258 VEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 39/165 (23%), Positives = 67/165 (40%), Gaps = 8/165 (4%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA-RFTGMIPHQLGNLSNLQYLDLS 150
           L  L  L L  N  + I        + +LR L+L +  R + +       LSNL+YL+L+
Sbjct: 135 LSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193

Query: 151 GVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
                 +   I  L+ L  L+ L +S  +LS           L  L++L +   ++    
Sbjct: 194 M----CNLREIPNLTPLIKLDELDLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIE 247

Query: 211 LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
             +  N  SL  ++L+ N            L  L+ + L+ N +N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.5 bits (165), Expect = 8e-12
 Identities = 56/290 (19%), Positives = 90/290 (31%), Gaps = 66/290 (22%)

Query: 346 ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
               L L   QI     N     + L  L LS N +      +   +ANL +L+L +N+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQ 465
             T+    FV L+KL       N +        +P +    +                  
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPI------ESIPSYAFNRIP----------------- 160

Query: 466 KKLNDLDISST-RISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLL 524
             L  LD+    R+S     AF   +    YLN++   +   +P                
Sbjct: 161 -SLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLRE-IPNLTPLI---------- 207

Query: 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLG 584
                                        ++ L LS NH S   P  +     L+ L + 
Sbjct: 208 ----------------------------KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 585 NNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
            +        +   L SL  +NL +N L+ +    F     LE + +  N
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  100 bits (250), Expect = 2e-22
 Identities = 73/327 (22%), Positives = 113/327 (34%), Gaps = 31/327 (9%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG--VYFELHAETISWLSGLSLLEHLYI 175
            ++ Y++LS      +       L +LQ+L +        +   T     GLS L  L +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIILKL 86

Query: 176 SFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA--NFSSLTTLDLSGNQFQGQ 233
            +    +        N L +L+ L L+ C L    L  +     +SL  L L  N  +  
Sbjct: 87  DYNQFLQLETGAF--NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 234 IPSRL-GNLTSLKHLDLYSNQFNSAVLGWLSKL--NDLEVLSLEDNRLQ-------GDIS 283
            P+    N+     LDL  N+  S     L         +L L    LQ       G   
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 284 SLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL------- 336
                  TSI  L LS N      +   F      T         S ++           
Sbjct: 205 CGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 337 ---GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMA 393
                F G  A  +++  L   +IF  L +    F  L  L L+ N+++     +   + 
Sbjct: 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 394 NLESLDLSNNKLNGTVSEIHFVNLTKL 420
           +L  L+LS N L G++    F NL KL
Sbjct: 324 HLLKLNLSQNFL-GSIDSRMFENLDKL 349

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 99.4 bits (248), Expect = 5e-22
 Identities = 87/438 (19%), Positives = 151/438 (34%), Gaps = 76/438 (17%)

Query: 242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             + ++DL  N          S+L DL+ L +E       I +     L+S+  L L +N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 302 DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI---- 357
                          +                   G F+G     LE L L  C +    
Sbjct: 90  ---------------QFLQLET-------------GAFNGLA--NLEVLTLTQCNLDGAV 119

Query: 358 -----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL-GQMANLESLDLSNNKLNGTVSE 411
                F  LT+       L  L L +N +    P S    M     LDL+ NK+     E
Sbjct: 120 LSGNFFKPLTS-------LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172

Query: 412 IHFVNLTKL-VSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLND 470
              +N      + L  ++  +  +N  W+   +               P        +  
Sbjct: 173 D-LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN------------PFKNT---SITT 216

Query: 471 LDISSTRISDKIPRAFWNSIF--QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS- 527
           LD+S     + + + F+++I   +   L +S +   G      +   P   T   L  S 
Sbjct: 217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG 276

Query: 528 --IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGN 585
               DLS + +  ++   +        ++E L L+ N  ++   + +     L  LNL  
Sbjct: 277 VKTCDLSKSKIF-ALLKSVFSH---FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 586 NNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWI 644
           N    S+   +   L  L  L+L  N +  +   SF     L+ L +  N+L  S+P  I
Sbjct: 333 NFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGI 390

Query: 645 GERFSRLMILILRSNKFH 662
            +R + L  + L +N + 
Sbjct: 391 FDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 3e-21
 Identities = 71/365 (19%), Positives = 125/365 (34%), Gaps = 48/365 (13%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
           S   L+ L  L +       +        L +L  L L   +F  +       L+NL+ L
Sbjct: 49  SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
            L+    +    + ++   L+ LE L +   N+ K   +     ++     L L+F ++ 
Sbjct: 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA-SFFLNMRRFHVLDLTFNKVK 167

Query: 208 HFP--LLSSANFSSLTTLDLSGNQ--------FQGQIPSRLGNLTSLKHLDLYSNQFNSA 257
                 L +      T L LS              +        TS+  LDL  N F  +
Sbjct: 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 258 VLGWL-SKLNDLEVLSLEDNRLQGDISSLGLDNL-------------TSIQKLLLSWNDE 303
           +       +   ++ SL  +      SS G  N              + ++   LS + +
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS-K 286

Query: 304 LGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI------ 357
           +   + + F     L   ++A  ++   I +    F G     L  L L    +      
Sbjct: 287 IFALLKSVFSHFTDLEQLTLAQNEI-NKIDD--NAFWGLT--HLLKLNLSQNFLGSIDSR 341

Query: 358 -FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL-SLGQMANLESLDLSNNKLNGTVSEIHFV 415
            F +L         L  L LS N +  ++   S   + NL+ L L  N+L  +V +  F 
Sbjct: 342 MFENLDK-------LEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392

Query: 416 NLTKL 420
            LT L
Sbjct: 393 RLTSL 397

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 94.0 bits (234), Expect = 2e-20
 Identities = 78/444 (17%), Positives = 139/444 (31%), Gaps = 73/444 (16%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQ 253
            +  + LS   +      S +    L  L +        I +     L+SL  L L  NQ
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGKIP-TS 311
           F     G  + L +LEVL+L    L G + S      LTS++ L+L  N  +    P + 
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASF 149

Query: 312 FGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRL 371
           F  + +     +   K+                     L L    +       LG  K  
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE---EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206

Query: 372 NFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLI 431
           N    +                ++ +LDLS N    ++++  F +            SLI
Sbjct: 207 NPFKNT----------------SITTLDLSGNGFKESMAKR-FFDAIAGTKIQ----SLI 245

Query: 432 FKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF 491
              + N            +         L       +   D+S ++I   + ++ ++   
Sbjct: 246 LSNSYN--MGSSFGHTNFKDPDNFTFKGLEAS---GVKTCDLSKSKIF-ALLKSVFSHFT 299

Query: 492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS 551
               L ++ N+I                              N +  + F  +       
Sbjct: 300 DLEQLTLAQNEI------------------------------NKIDDNAFWGL------- 322

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNN 610
            ++  L LS N         + N  +L  L+L  N+   +L       L +L+ L L  N
Sbjct: 323 THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTN 381

Query: 611 RLSGVIPTSFKNFSILEALDVGEN 634
           +L  V    F   + L+ + +  N
Sbjct: 382 QLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 66/331 (19%), Positives = 111/331 (33%), Gaps = 36/331 (10%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
            +        I +   +G     ++  LKL  N F +     +     L  L L   N  
Sbjct: 60  KVEQQTPGLVIRNNTFRG---LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 590 GS-LPMSI-GTLTSLRSLNLRNNRLSGVIP-TSFKNFSILEALDVGENELVGSIP--TWI 644
           G+ L  +    LTSL  L LR+N +  + P + F N      LD+  N++  SI     +
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLL 175

Query: 645 GERFSRLMILILRSNKFHGDFPIQLC--------RLASLQILDVAYNSLLGTIPRCINNF 696
             +     +L L S          L         +  S+  LD++ N       +     
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF-----KESMAK 230

Query: 697 SAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE 756
                   +   S IL            T+              + V++ D+S +     
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-A 289

Query: 757 IPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSF 814
           +   V ++   L+ L L+ N    +I DN    +  +  L+ S N L     +   NL  
Sbjct: 290 LLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348

Query: 815 LNYLNLSNNNLNGEIPSSTQLQSFDASSFAG 845
           L  L+LS N           +++    SF G
Sbjct: 349 LEVLDLSYN----------HIRALGDQSFLG 369

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 22/204 (10%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGN----------- 140
              +  LDLSGN F+     ++  ++   +  +L  +    M                  
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 141 ---LSNLQYLDLSGVY-FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
               S ++  DLS    F L        S  + LE L ++   ++K  D+      L  L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSV---FSHFTDLEQLTLAQNEINKIDDN--AFWGLTHL 325

Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQFN 255
            +L LS   L         N   L  LDLS N  +  +  +    L +LK L L +NQ  
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

Query: 256 SAVLGWLSKLNDLEVLSLEDNRLQ 279
           S   G   +L  L+ + L  N   
Sbjct: 385 SVPDGIFDRLTSLQKIWLHTNPWD 408

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 5e-08
 Identities = 45/268 (16%), Positives = 87/268 (32%), Gaps = 22/268 (8%)

Query: 600 TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
             +  ++L  N ++ +  TSF     L+ L V +      I        S L+IL L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 660 KFHGDFPIQLCRLASLQILDVAYNSL-LGTIPRCI--------------NNFSAMATADS 704
           +F          LA+L++L +   +L    +                  NN   +  A  
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149

Query: 705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSI--DISMNNFSGEIPVEVT 762
                         NK+       +  F  ++ ++L L      D++      E      
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 763 NLQGLQSLNLSHNLFTGRIP---DNIGVMRSIESLDFSANQLSGQ--IPQSMSNLSFLNY 817
               + +L+LS N F   +     +      I+SL  S +   G      +  +     +
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 818 LNLSNNNLNGEIPSSTQLQSFDASSFAG 845
             L  + +     S +++ +   S F+ 
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSH 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  100 bits (250), Expect = 2e-22
 Identities = 52/211 (24%), Positives = 78/211 (36%), Gaps = 9/211 (4%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L HL  L L  N  + I+       L +L  L L     T +       LS L+ L L  
Sbjct: 98  LHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVN-LSKASDSLLVINSLHSLKELKLSFCELHHFP 210
               + +      + +  L  L +  +  L   S+       L +LK L L  C +   P
Sbjct: 157 N--PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF--EGLFNLKYLNLGMCNIKDMP 212

Query: 211 LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
            L+      L  L++SGN F    P     L+SLK L + ++Q +         L  L  
Sbjct: 213 NLT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVE 270

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           L+L  N L   +       L  + +L L  N
Sbjct: 271 LNLAHNNLSS-LPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 97.5 bits (243), Expect = 2e-21
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 9/209 (4%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
           +  +L+L  N+ Q IQ       L +L  L L +     +       L++L  L+L    
Sbjct: 76  NTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF--D 132

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC-ELHHFPLL 212
             L          LS L  L++    +          N + SL  L L    +L +    
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEG 190

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
           +     +L  L+L     +  +P+ L  L  L+ L++  N F     G    L+ L+ L 
Sbjct: 191 AFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           + ++++   I     D L S+ +L L+ N
Sbjct: 249 VMNSQVS-LIERNAFDGLASLVELNLAHN 276

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 63/270 (23%), Positives = 96/270 (35%), Gaps = 36/270 (13%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            S+   L+L  N  Q        +L  L+ L L  N      +G  + L  L  L L DN
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDI 332
            L   I S   + L+ +++L L  N      I      +F ++  L    +   K  + I
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNN-----PIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 333 SEILGIFSGCVAYELESLYLRGCQI-----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
           SE  G F G     L+ L L  C I        L         L  L +S N      P 
Sbjct: 188 SE--GAFEGLFN--LKYLNLGMCNIKDMPNLTPLVG-------LEELEMSGNHFPEIRPG 236

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTV 446
           S   +++L+ L + N++++  +    F  L  LV      N+L   +  +   P   L  
Sbjct: 237 SFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVE 294

Query: 447 LELRS------CHLGPRFPLWLQLQKKLND 470
           L L        C +      WL+     N 
Sbjct: 295 LHLHHNPWNCDCDILW-LAWWLREYIPTNS 323

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 53/246 (21%), Positives = 90/246 (36%), Gaps = 34/246 (13%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ 229
             +L +   N+            LH L+ L+L    +    + +    +SL TL+L  N 
Sbjct: 77  TRYLNLMENNIQMIQADTF--RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 230 FQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED-NRLQGDISSLGL 287
               IPS     L+ L+ L L +N   S      +++  L  L L +  +L+  IS    
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAF 192

Query: 288 DNLTSIQKLLLSWNDELGGKIPT--SFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAY 345
           + L +++ L L         I    +   L  L    M+     +      G F G    
Sbjct: 193 EGLFNLKYLNLGMC-----NIKDMPNLTPLVGLEELEMSGNHFPEIRP---GSFHGLS-- 242

Query: 346 ELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS-LGQMANLES 397
            L+ L++   Q+       F  L +       L  L L++N +  S+P      +  L  
Sbjct: 243 SLKKLWVMNSQVSLIERNAFDGLAS-------LVELNLAHNNLS-SLPHDLFTPLRYLVE 294

Query: 398 LDLSNN 403
           L L +N
Sbjct: 295 LHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 3e-17
 Identities = 37/165 (22%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA-RFTGMIPHQLGNLSNLQYLDLS 150
           L  L  L L  N  + I        + +L  L+L +  +   +       L NL+YL+L 
Sbjct: 146 LSKLRELWLRNNPIESIP-SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG 204

Query: 151 GVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
                 + + +  L+ L  LE L +S  +  +        + L SLK+L +   ++    
Sbjct: 205 M----CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSF--HGLSSLKKLWVMNSQVSLIE 258

Query: 211 LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
             +    +SL  L+L+ N            L  L  L L+ N +N
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 60/250 (24%), Positives = 93/250 (37%), Gaps = 46/250 (18%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              R LNL  NN       +   L  L  L L  N +  +   +F   + L  L++ +N 
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
           L   IP+   E  S+L  L LR+N           R+ SL  LD+     L  I      
Sbjct: 135 LT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE---- 189

Query: 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG 755
                             AF G                      L  ++ +++ M N   
Sbjct: 190 -----------------GAFEG----------------------LFNLKYLNLGMCNIK- 209

Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 815
           ++P  +T L GL+ L +S N F    P +   + S++ L    +Q+S     +   L+ L
Sbjct: 210 DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268

Query: 816 NYLNLSNNNL 825
             LNL++NNL
Sbjct: 269 VELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 2e-12
 Identities = 52/268 (19%), Positives = 82/268 (30%), Gaps = 42/268 (15%)

Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
                +L L  N +      +   + +LE L L  N +   +    F  L  L +     
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 428 NSLIFKINPNW-VPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486
           N L   I         +L  L LR+  +             L  LD+   +  + I    
Sbjct: 133 NWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 487 WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546
           +  +F   YLN+    I   +P                                      
Sbjct: 192 FEGLFNLKYLNLGMCNIKD-MPNLTPLV-------------------------------- 218

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
                  +E L++S NHF E  P  +     L+ L + N+  +     +   L SL  LN
Sbjct: 219 ------GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGEN 634
           L +N LS +    F     L  L +  N
Sbjct: 273 LAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 48/256 (18%), Positives = 80/256 (31%), Gaps = 68/256 (26%)

Query: 347 LESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLD 399
           LE L L    I       F  L +       LN L L +N +      +   ++ L  L 
Sbjct: 101 LEVLQLGRNSIRQIEVGAFNGLAS-------LNTLELFDNWLTVIPSGAFEYLSKLRELW 153

Query: 400 LSNNKLNGTVSEIHFVNLTKLVS-FLANANSLIFKINPNWVPP------FQLTVLELRSC 452
           L NN +  ++    F  +  L+   L     L       ++        F L  L L  C
Sbjct: 154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKL------EYISEGAFEGLFNLKYLNLGMC 206

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
           ++    P    L   L +L++S     +  P +F   +     L V  +Q+         
Sbjct: 207 NI-KDMPNLTPL-VGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVS-------- 255

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW 572
                             +  NA  G              ++  L L+ N+ S    D +
Sbjct: 256 -----------------LIERNAFDGL------------ASLVELNLAHNNLSSLPHDLF 286

Query: 573 MNWPRLRTLNLGNNNF 588
                L  L+L +N +
Sbjct: 287 TPLRYLVELHLHHNPW 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.0 bits (242), Expect = 6e-22
 Identities = 42/236 (17%), Positives = 86/236 (36%), Gaps = 31/236 (13%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L  L  L LS N  +  ++P+ +     L+ L + +   T +       L+ +  ++L  
Sbjct: 99  LVKLERLYLSKNQLK--ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLL-------------------VINS 192
              +          G+  L ++ I+  N++     L                     +  
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKG 214

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           L++L +L LSF  +      S AN   L  L L+ N+   ++P  L +   ++ + L++N
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273

Query: 253 QFNS------AVLGWLSKLNDLEVLSLEDNRLQ-GDISSLGLDNLTSIQKLLLSWN 301
             ++         G+ +K      +SL  N +Q  +I       +     + L   
Sbjct: 274 NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.8 bits (239), Expect = 1e-21
 Identities = 59/317 (18%), Positives = 106/317 (33%), Gaps = 43/317 (13%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152
                LDL  N    I+      +L NL  L L   + + + P     L  L+ L LS  
Sbjct: 52  PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 153 YF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
              EL  +          L+ L +    ++K   S+   N L+ +  ++L    L    +
Sbjct: 111 QLKELPEKM------PKTLQELRVHENEITKVRKSVF--NGLNQMIVVELGTNPLKSSGI 162

Query: 212 LSSA--NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLE 269
            + A      L+ + ++       IP   G   SL  L L  N+        L  LN+L 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 270 VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS 329
            L L  N +   + +  L N   +++L L+ N +L  K+P        +    + +  +S
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNN-KL-VKVPGGLADHKYIQVVYLHNNNIS 276

Query: 330 QDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSI--PL 387
                            + S             +        + + L +N +      P 
Sbjct: 277 ----------------AIGSNDFCPPGYNTKKAS-------YSGVSLFSNPVQYWEIQPS 313

Query: 388 SLGQMANLESLDLSNNK 404
           +   +    ++ L N K
Sbjct: 314 TFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
               LK+L  L L  N    I  P   A LV L  L LS+ +    +P ++     LQ L
Sbjct: 71  DFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQEL 126

Query: 148 DLSG-VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
            +      ++        +GL+ +  + +    L  +         +  L  ++++   +
Sbjct: 127 RVHENEITKVRKSV---FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVLGWLSKL 265
              P        SLT L L GN+   ++ +  L  L +L  L L  N  ++   G L+  
Sbjct: 184 TTIP---QGLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 266 NDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             L  L L +N+L   +   GL +   IQ + L  N
Sbjct: 240 PHLRELHLNNNKLV-KVPG-GLADHKYIQVVYLHNN 273

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 60/297 (20%), Positives = 116/297 (39%), Gaps = 41/297 (13%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
           ++   +   L L  N  +E     + N   L TL L NN  +   P +   L  L  L L
Sbjct: 48  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667
             N+L  +     K    L+ L V ENE+   +   +    ++++++ L +N       I
Sbjct: 108 SKNQLKELPEKMPKT---LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK-SSGI 162

Query: 668 Q---LCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVED 724
           +      +  L  + +A  ++  TIP+      ++            L+     NKI + 
Sbjct: 163 ENGAFQGMKKLSYIRIADTNI-TTIPQ--GLPPSLTE----------LHL--DGNKITKV 207

Query: 725 TSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPD 783
            +  +KG        LN +  + +S N+ S  +      N   L+ L+L++N    ++P 
Sbjct: 208 DAASLKG--------LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPG 257

Query: 784 NIGVMRSIESLDFSANQLSG------QIPQSMSNLSFLNYLNLSNNNLN-GEIPSST 833
            +   + I+ +    N +S         P   +  +  + ++L +N +   EI  ST
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.7 bits (205), Expect = 4e-17
 Identities = 58/297 (19%), Positives = 103/297 (34%), Gaps = 30/297 (10%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
                 LDL  N+          NL +L  L L +N+ +    G  + L  LE L L  N
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKL-SQD 331
           +L      L      ++Q+L +  N     +I     + F  L ++    + +  L S  
Sbjct: 111 QL----KELPEKMPKTLQELRVHEN-----EITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ 391
           I    G F G     L  + +    I   +   L     L  L L  N++      SL  
Sbjct: 162 IEN--GAFQGMKK--LSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKITKVDAASLKG 214

Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
           + NL  L LS N ++  V      N   L     N N L+ K+         + V+ L +
Sbjct: 215 LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHN 272

Query: 452 CHL------GPRFPLWLQLQKKLNDLDISSTRIS-DKIPRAFWNSIFQYYYLNVSGN 501
            ++          P +   +   + + + S  +   +I  + +  ++    + +   
Sbjct: 273 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 64/406 (15%), Positives = 117/406 (28%), Gaps = 120/406 (29%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
            L  +  S    + ++P  L        LDL +N+      G    L +L  L L +N++
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88

Query: 279 QGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGI 338
              IS      L  +++L LS N               +L                   +
Sbjct: 89  S-KISPGAFAPLVKLERLYLSKN---------------QLKELPE-------------KM 119

Query: 339 FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSI--PLSLGQMANLE 396
                   L+ L +   +I     +      ++  + L  N +  S     +   M  L 
Sbjct: 120 PKT-----LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174

Query: 397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP 456
            + +++  +  T+ +    +LT+L   L            N     ++T ++  S     
Sbjct: 175 YIRIADTNIT-TIPQGLPPSLTEL--HLDG----------N-----KITKVDAAS----- 211

Query: 457 RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMP 516
                L+    L  L +S   IS     +  N                            
Sbjct: 212 -----LKGLNNLAKLGLSFNSISAVDNGSLAN---------------------------- 238

Query: 517 LIITPSLLLGSIFDLSNNALS---GSIFHLICQGENFSKNIEFLKLSTNHFSE------G 567
              TP L       L+NN L    G +           K I+ + L  N+ S        
Sbjct: 239 ---TPHL---RELHLNNNKLVKVPGGLADH--------KYIQVVYLHNNNISAIGSNDFC 284

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNR 611
            P           ++L +N        P +   +    ++ L N +
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 73.5 bits (181), Expect = 5e-14
 Identities = 55/318 (17%), Positives = 102/318 (32%), Gaps = 70/318 (22%)

Query: 530 DLSNNALSGSIFHLICQGENFS--KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN 587
           DL NN ++  I     +  +F   KN+  L L  N  S+  P  +    +L  L L  N 
Sbjct: 58  DLQNNKIT-EI-----KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL-VGSIPTWIGE 646
               LP       +L+ L +  N ++ V  + F   + +  +++G N L    I     +
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 647 RFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706
              +L  + +         P  L    SL  L +  N +   +                 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKI-TKVDA--------------- 209

Query: 707 QSSDILYAFSG----------DNKIVEDTSLVMKGFLVEYNSILNLV--RSIDISMNNFS 754
                  +  G           N I            V+  S+ N    R + ++ N   
Sbjct: 210 ------ASLKGLNNLAKLGLSFNSISA----------VDNGSLANTPHLRELHLNNNKLV 253

Query: 755 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDN-------IGVMRSIESLDFSANQLS-GQIP 806
            ++P  + + + +Q + L +N  +  I  N            S   +   +N +   +I 
Sbjct: 254 -KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQ 311

Query: 807 QSM-SNLSFLNYLNLSNN 823
            S    +     + L N 
Sbjct: 312 PSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 67.3 bits (165), Expect = 5e-12
 Identities = 57/328 (17%), Positives = 108/328 (32%), Gaps = 61/328 (18%)

Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA 427
                 L L NN++          + NL +L L NNK++  +S   F  L KL     + 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW 487
           N              QL  L               ++ K L +L +    I+ K+ ++ +
Sbjct: 110 N--------------QLKELPE-------------KMPKTLQELRVHENEIT-KVRKSVF 141

Query: 488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG----SIFDLSNNALSGSIFHL 543
           N + Q   + +  N +               I      G    S   +++  ++ +I   
Sbjct: 142 NGLNQMIVVELGTNPLKSSG-----------IENGAFQGMKKLSYIRIADTNIT-TI--- 186

Query: 544 ICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR 603
                    ++  L L  N  ++           L  L L  N+ +     S+     LR
Sbjct: 187 --PQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLR 243

Query: 604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENEL--VGS---IPTWIGERFSRLMILILRS 658
            L+L NN+L   +P    +   ++ + +  N +  +GS    P     + +    + L S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 659 NKFHGDFPIQ---LCRLASLQILDVAYN 683
           N     + IQ      +     + +   
Sbjct: 303 NPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 2e-21
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 11/244 (4%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
             ++ +LDLS N+      S L    +L+ L L SN  N+      S L  LE L L  N
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
            L  ++SS     L+S+  L L  N        + F  L KL    + +      I    
Sbjct: 111 YLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-- 167

Query: 337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE 396
             F+G     LE L +    +  +    L   + ++ L L   Q    + + +   +++E
Sbjct: 168 KDFAGLTF--LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 397 SLDLSNNKLNGT----VSEIHFVNLTKLVSF--LANANSLIFKINPNWVPPFQLTVLELR 450
            L+L +  L+      +S     +L K  +F  +   +  +F++         L  LE  
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 451 SCHL 454
              L
Sbjct: 286 RNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 53/269 (19%), Positives = 94/269 (34%), Gaps = 16/269 (5%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF-ELHAETISWLSGLSLLEHLYIS 176
             ++ L+LS  R T +    L    NLQ L L+      +  ++    S L  LEHL +S
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS---FSSLGSLEHLDLS 108

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSS-ANFSSLTTLDLSGNQFQGQIP 235
           +  LS  S S      L SL  L L           S  ++ + L  L +       +I 
Sbjct: 109 YNYLSNLSSSWF--KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 236 SR-LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQ 294
            +    LT L+ L++ ++   S     L  + ++  L L   +    +  + +D  +S++
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVE 225

Query: 295 KLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL 350
            L L   D                L K  +F          + +++ + +      L  L
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQIS--GLLEL 282

Query: 351 YLRGCQIFGHLTNQLGQFKRLNFLGLSNN 379
                Q+         +   L  + L  N
Sbjct: 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 68.2 bits (167), Expect = 3e-12
 Identities = 47/307 (15%), Positives = 81/307 (26%), Gaps = 74/307 (24%)

Query: 337 GIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL 389
                CV   L++L L    I       F  L +       L  L LS N +  ++  S 
Sbjct: 70  SDLQRCVN--LQALVLTSNGINTIEEDSFSSLGS-------LEHLDLSYNYL-SNLSSSW 119

Query: 390 -GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVL 447
              +++L  L+L  N          F +LTKL            KI          L  L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGV 507
           E+ +  L                                  SI    +L +   Q     
Sbjct: 180 EIDASDL-------------------------QSYEPKSLKSIQNVSHLILHMKQHI--- 211

Query: 508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG 567
                  +  I           +L +  L                         +  S G
Sbjct: 212 ------LLLEIFVDVTSSVECLELRDTDLDT--------------------FHFSELSTG 245

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
             +  +     R + + + +    +   +  ++ L  L    N+L  V    F   + L+
Sbjct: 246 ETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304

Query: 628 ALDVGEN 634
            + +  N
Sbjct: 305 KIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 48/276 (17%), Positives = 91/276 (32%), Gaps = 40/276 (14%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNR 611
           N++ L L++N  +    D + +   L  L+L  N  + +L  S    L+SL  LNL  N 
Sbjct: 77  NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135

Query: 612 LSGVIPTS-FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC 670
              +  TS F + + L+ L VG  +    I        + L  L + ++      P  L 
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195

Query: 671 RLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730
            + ++  L +        +              SS +  ++           E ++    
Sbjct: 196 SIQNVSHLILHMKQH-ILLLE--IFVDVT----SSVECLELRDTDLDTFHFSELSTGETN 248

Query: 731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 790
             +          R++ I+  +   ++   +  + GL  L  S N     +PD I     
Sbjct: 249 SLI-----KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI----- 296

Query: 791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826
                                L+ L  + L  N  +
Sbjct: 297 ------------------FDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 45/292 (15%), Positives = 93/292 (31%), Gaps = 49/292 (16%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLN 606
              ++ ++ L LS N  +            L+ L L +N    ++      +L SL  L+
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----- 661
           L  N LS +  + FK  S L  L++  N       T +    ++L IL + +        
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 662 HGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI 721
             DF      L  L+ L++  + L  +                         +      +
Sbjct: 167 RKDFA----GLTFLEELEIDASDL-QSYEPK---------------------SLKSIQNV 200

Query: 722 VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 781
              + L++          +       +          VE   L+         +  +   
Sbjct: 201 ---SHLIL-----HMKQHIL------LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 782 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 833
            +++    +  ++  +   L  Q+ + ++ +S L  L  S N L   +P   
Sbjct: 247 TNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 61.7 bits (150), Expect = 4e-10
 Identities = 31/146 (21%), Positives = 60/146 (41%), Gaps = 10/146 (6%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L  L  L++  +D Q  + PK L S+ N+ +L L   +   ++   +   S+++ L+L  
Sbjct: 173 LTFLEELEIDASDLQSYE-PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 152 VYF------ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE 205
                    EL     + L       ++ I+  +L +      ++N +  L EL+ S  +
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK---LLNQISGLLELEFSRNQ 288

Query: 206 LHHFPLLSSANFSSLTTLDLSGNQFQ 231
           L   P       +SL  + L  N + 
Sbjct: 289 LKSVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 38/257 (14%), Positives = 86/257 (33%), Gaps = 30/257 (11%)

Query: 441 PFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSG 500
              +  L+L +  +       LQ    L  L ++S  I+     +F +S+    +L++S 
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSY 109

Query: 501 NQIYGGVPK--FDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSK--NIEF 556
           N +   +    F           SL   +  +L  N         + +   FS    ++ 
Sbjct: 110 NYL-SNLSSSWFKP-------LSSL---TFLNLLGNPYKT-----LGETSLFSHLTKLQI 153

Query: 557 LKLSTNHFSEGIPD-CWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGV 615
           L++        I    +     L  L +  ++     P S+ ++ ++  L L   +   +
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 616 IPTSFKNFSILEALDVGENELVG----SIPTWIGERFSRLMIL---ILRSNKFHGDFPIQ 668
           +       S +E L++ + +L       + T       +        +            
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKL 272

Query: 669 LCRLASLQILDVAYNSL 685
           L +++ L  L+ + N L
Sbjct: 273 LNQISGLLELEFSRNQL 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 39/252 (15%), Positives = 84/252 (33%), Gaps = 74/252 (29%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
            R       + +   S+P  +    +++SL+L NNR++ +  +  +    L+AL +  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
           +  +I                  + F          L SL+ LD++YN  L  +      
Sbjct: 88  IN-TIE----------------EDSFSS--------LGSLEHLDLSYN-YLSNLSS---- 117

Query: 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG 755
                              F                        L+ +  +++  N +  
Sbjct: 118 -----------------SWFKP----------------------LSSLTFLNLLGNPYKT 138

Query: 756 EIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLS 813
                + ++L  LQ L + +     +I       +  +E L+  A+ L    P+S+ ++ 
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 198

Query: 814 FLNYLNLSNNNL 825
            +++L L     
Sbjct: 199 NVSHLILHMKQH 210

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 96.7 bits (240), Expect = 8e-21
 Identities = 42/210 (20%), Positives = 71/210 (33%), Gaps = 22/210 (10%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
               +  +L                L ++  +  + +    +    +  L N+  L L+G
Sbjct: 20  FAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 74

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                    I  L+ L  L  L++    +   S     +  L  LK L L    +     
Sbjct: 75  ----NKLTDIKPLTNLKNLGWLFLDENKIKDLSS----LKDLKKLKSLSLEHNGISDING 126

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
           L   +   L +L L  N+      + L  LT L  L L  NQ +   +  L+ L  L+ L
Sbjct: 127 LV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNL 180

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
            L  N +  D+    L  L ++  L L   
Sbjct: 181 YLSKNHIS-DLR--ALAGLKNLDVLELFSQ 207

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 3e-18
 Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 20/215 (9%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +  EL  +  +  + +D + +Q    +  L N+  L L+  + T + P  L NL NL +
Sbjct: 37  VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGW 91

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L L         + +S L  L  L+ L +    +S  +     +  L  L+ L L   ++
Sbjct: 92  LFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNKI 143

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
               +LS    + L TL L  NQ    I   L  LT L++L L  N  +   L  L+ L 
Sbjct: 144 TDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD--LRALAGLK 197

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           +L+VL L       +       NL     +  +  
Sbjct: 198 NLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDG 231

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.5 bits (216), Expect = 6e-18
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 17/188 (9%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L ++  L L+GN    I   K L +L NL +L L + +   +    L +L  L+ L L  
Sbjct: 64  LPNVTKLFLNGNKLTDI---KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                    I+ L  L  LE LY+    ++  +     ++ L  L  L L   ++     
Sbjct: 119 NGIS----DINGLVHLPQLESLYLGNNKITDITV----LSRLTKLDTLSLEDNQISDIVP 170

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
           L+    + L  L LS N         L  L +L  L+L+S +  +  +   S L     +
Sbjct: 171 LA--GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 272 SLEDNRLQ 279
              D  L 
Sbjct: 227 KNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.0 bits (207), Expect = 7e-17
 Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 29/228 (12%)

Query: 196 LKELKLSFCELHH-FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           + E       +   FP      F+     +L        +      L S+  +   ++  
Sbjct: 1   MGETITVSTPIKQIFPD---DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT--SF 312
            S  +  +  L ++  L L  N+L  DI    L NL ++  L L  N     KI    S 
Sbjct: 56  KS--VQGIQYLPNVTKLFLNGNKLT-DIK--PLTNLKNLGWLFLDEN-----KIKDLSSL 105

Query: 313 GKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLN 372
             L KL S S+    +S DI+ ++ +       +LESLYL   +I   +T  L +  +L+
Sbjct: 106 KDLKKLKSLSLEHNGIS-DINGLVHL------PQLESLYLGNNKIT-DITV-LSRLTKLD 156

Query: 373 FLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
            L L +NQ+   I   L  +  L++L LS N ++   +     NL  L
Sbjct: 157 TLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDLRALAGLKNLDVL 202

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.2 bits (192), Expect = 5e-15
 Identities = 38/188 (20%), Positives = 68/188 (36%), Gaps = 17/188 (9%)

Query: 89  LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLD 148
           L  LK+L  L L  N  + +     L  L  L+ L+L     + +    L +L  L+ L 
Sbjct: 83  LTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 137

Query: 149 LSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHH 208
           L           I+ LS L+ L+ L +    +S        +  L  L+ L LS   +  
Sbjct: 138 LGNNKIT----DITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD 189

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
              L+     +L  L+L   +   +  +   NL     +        +     +S   D 
Sbjct: 190 LRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDY 245

Query: 269 EVLSLEDN 276
           E  +++ +
Sbjct: 246 EKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 60.9 bits (147), Expect = 1e-09
 Identities = 53/261 (20%), Positives = 94/261 (36%), Gaps = 41/261 (15%)

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
            +      NL   + T ++      L S+  +   N+ +  V     +    +  L +  
Sbjct: 19  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 74

Query: 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCI 693
           N+L   I          L  L L  NK        L  L  L+ L + +N +       I
Sbjct: 75  NKLT-DIKPL--TNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGI-----SDI 124

Query: 694 NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNF 753
           N    +   +S       LY   G+NKI + T L          S L  + ++ +  N  
Sbjct: 125 NGLVHLPQLES-------LYL--GNNKITDITVL----------SRLTKLDTLSLEDNQI 165

Query: 754 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQSMSN 811
           S  +P+    L  LQ+L LS N     I D   +  +++++ L+  + +   +     SN
Sbjct: 166 SDIVPLA--GLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSN 219

Query: 812 LSFLNYLNLSNNNLNGEIPSS 832
           L   N +  ++ +L      S
Sbjct: 220 LVVPNTVKNTDGSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 52/367 (14%), Positives = 89/367 (24%), Gaps = 114/367 (31%)

Query: 268 LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTK 327
           +         ++  I     D      K  L           T      +L S       
Sbjct: 1   MGETITVSTPIK-QIF--PDDAFAETIKDNLKKKS------VTDAVTQNELNS------- 44

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
                              ++ +      I   +   +     +  L L+ N++    PL
Sbjct: 45  -------------------IDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDIKPL 83

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447
           +   + NL  L L  NK+    S      L  L   L +    I  IN            
Sbjct: 84  T--NLKNLGWLFLDENKIKDLSSLKDLKKLKSL--SLEHNG--ISDING----------- 126

Query: 448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGV 507
                         L    +L  L + + +I+D    +    +     L++  NQI    
Sbjct: 127 --------------LVHLPQLESLYLGNNKITDITVLSRLTKL---DTLSLEDNQI---- 165

Query: 508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG 567
               S  +PL     L       LS N +S               ++  L          
Sbjct: 166 ----SDIVPLAGLTKL---QNLYLSKNHIS---------------DLRALA--------- 194

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
                     L  L L +             L    ++   +  L      S  +    E
Sbjct: 195 ------GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS--DDGDYE 246

Query: 628 ALDVGEN 634
             +V  +
Sbjct: 247 KPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 52.4 bits (125), Expect = 6e-07
 Identities = 49/308 (15%), Positives = 101/308 (32%), Gaps = 53/308 (17%)

Query: 531 LSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTG 590
             +  +   IF      + F        L     ++ +         +  +   N++   
Sbjct: 6   TVSTPIK-QIFPD----DAF-AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK- 56

Query: 591 SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSR 650
           S+   I  L ++  L L  N+L+ + P    N   L  L + EN++   + +   +   +
Sbjct: 57  SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSSL--KDLKK 110

Query: 651 LMILILRSNKFHGDFPIQ----LCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD 706
           L  L L  N       I     L  L  L+ L +  N +       I   S +       
Sbjct: 111 LKSLSLEHNG------ISDINGLVHLPQLESLYLGNNKI-----TDITVLSRL------- 152

Query: 707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQG 766
              D L     DN+I +   L          + L  ++++ +S N+ S ++   +  L+ 
Sbjct: 153 TKLDTLSL--EDNQISDIVPL----------AGLTKLQNLYLSKNHIS-DLR-ALAGLKN 198

Query: 767 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826
           L  L L       +  ++   +    ++  +   L    P+ +S+       N+  +   
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPE 256

Query: 827 GEIPSSTQ 834
                S  
Sbjct: 257 FTNEVSFI 264

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 61/324 (18%), Positives = 107/324 (33%), Gaps = 58/324 (17%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152
                LDL  ND   ++       L +L  L L   + + +       L  LQ L +S  
Sbjct: 54  PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 153 YF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
           +  E+           S L  L I    + K    +   + L ++  +++    L +   
Sbjct: 113 HLVEIPPNL------PSSLVELRIHDNRIRKVPKGVF--SGLRNMNCIEMGGNPLENSGF 164

Query: 212 LSSANFS--SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLE 269
              A F    L  L +S  +    IP  L    +L  L L  N+  +  L  L + + L 
Sbjct: 165 EPGA-FDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 270 VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS 329
            L L  N+++  I +  L  L ++++L L  N               KL+        L 
Sbjct: 221 RLGLGHNQIR-MIENGSLSFLPTLRELHLDNN---------------KLSRVPAGLPDLK 264

Query: 330 QDISEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMD 382
                            L+ +YL    I       F  +   + +    N + L NN + 
Sbjct: 265 L----------------LQVVYLHTNNITKVGVNDFCPVGFGV-KRAYYNGISLFNNPVP 307

Query: 383 GSI--PLSLGQMANLESLDLSNNK 404
                P +   + +  ++   N K
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.2 bits (219), Expect = 6e-19
 Identities = 43/234 (18%), Positives = 78/234 (33%), Gaps = 32/234 (13%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L+ L  L +S N     +IP  L    +L  L +   R   +       L N+  +++ G
Sbjct: 101 LRKLQKLYISKNHLV--EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLL-------------------VINS 192
              E          GL  L +L IS   L+     L                     +  
Sbjct: 157 NPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR 215

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
              L  L L   ++      S +   +L  L L  N+   ++P+ L +L  L+ + L++N
Sbjct: 216 YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN 274

Query: 253 QFNS------AVLGWLSKLNDLEVLSLEDNRLQ-GDISSLGLDNLTSIQKLLLS 299
                       +G+  K      +SL +N +   ++       +T    +   
Sbjct: 275 NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 40/296 (13%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
           +  S +   L L  N  SE   D +     L  L L NN  +     +   L  L+ L +
Sbjct: 50  KEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF-HGDFP 666
             N L  + P    +   L  L + +N +   +P  +      +  + +  N   +  F 
Sbjct: 110 SKNHLVEIPPNLPSS---LVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFE 165

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
                   L  L ++   L   IP+  +    +            L+     NKI     
Sbjct: 166 PGAFDGLKLNYLRISEAKL-TGIPK--DLPETLNE----------LHL--DHNKIQAIEL 210

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI 785
             +           + +  + +  N     I     + L  L+ L+L +N  + R+P  +
Sbjct: 211 EDLLR--------YSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260

Query: 786 GVMRSIESLDFSANQLSGQIPQSM-------SNLSFLNYLNLSNNNL-NGEIPSST 833
             ++ ++ +    N ++ ++  +           ++ N ++L NN +   E+  +T
Sbjct: 261 PDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.5 bits (194), Expect = 8e-16
 Identities = 46/246 (18%), Positives = 80/246 (32%), Gaps = 35/246 (14%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ 229
              L +   ++S+          L  L  L L   ++      + +    L  L +S N 
Sbjct: 56  TTLLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 230 FQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD-ISSLGLD 288
              +IP  L   +SL  L ++ N+      G  S L ++  + +  N L+         D
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 289 NLTSIQKLLLSWN--DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
            L  +  L +S      +   +P +      L    +   K+   I             +
Sbjct: 171 GL-KLNYLRISEAKLTGIPKDLPET------LNELHLDHNKIQA-IEL--EDLLRY--SK 218

Query: 347 LESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLD 399
           L  L L   QI          L         L  L L NN++   +P  L  +  L+ + 
Sbjct: 219 LYRLGLGHNQIRMIENGSLSFLPT-------LRELHLDNNKLS-RVPAGLPDLKLLQVVY 270

Query: 400 LSNNKL 405
           L  N +
Sbjct: 271 LHTNNI 276

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 55/297 (18%), Positives = 92/297 (30%), Gaps = 53/297 (17%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
               T LDL  N            L  L  L L +N+ +       S L  L+ L +  N
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDI 332
            L      +  +  +S+ +L +  N     +I       F  L  +    M    L    
Sbjct: 113 HL----VEIPPNLPSSLVELRIHDN-----RIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163

Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIP-LSLGQ 391
            E  G F G    +L  L +   ++           + LN L L +N++  +I    L +
Sbjct: 164 FEP-GAFDGL---KLNYLRISEAKL---TGIPKDLPETLNELHLDHNKIQ-AIELEDLLR 215

Query: 392 MANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRS 451
            + L  L L +N++   +       L                          L  L L +
Sbjct: 216 YSKLYRLGLGHNQIR-MIENGSLSFLP------------------------TLRELHLDN 250

Query: 452 CHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF-----WNSIFQYYYLNVSGNQI 503
             L  R P  L   K L  + + +  I+      F           Y  +++  N +
Sbjct: 251 NKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 58/396 (14%), Positives = 107/396 (27%), Gaps = 101/396 (25%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
            L  +  S    +  +P  +        LDL +N  +         L  L  L L +N++
Sbjct: 34  HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 279 QGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGI 338
              I       L  +QKL +S N                L                   +
Sbjct: 91  S-KIHEKAFSPLRKLQKLYISKN---------------HLVEIPP-------------NL 121

Query: 339 FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQ-MDGSIPLSLGQMANLES 397
            S      L  L +   +I           + +N + +  N   +            L  
Sbjct: 122 PSS-----LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNY 176

Query: 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457
           L +S  KL   + +     L +L   L +          N     ++  +EL        
Sbjct: 177 LRISEAKLT-GIPKDLPETLNEL--HLDH----------N-----KIQAIELED------ 212

Query: 458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPL 517
               L    KL  L +   +I      +    +     L++  N++           +P 
Sbjct: 213 ----LLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLS---------RVPA 258

Query: 518 IITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPR 577
            +    LL  +  L  N ++                    K+  N F        +    
Sbjct: 259 GLPDLKLLQVV-YLHTNNIT--------------------KVGVNDFCPVGFG--VKRAY 295

Query: 578 LRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNR 611
              ++L NN        P +   +T   ++   N +
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 55/318 (17%), Positives = 98/318 (30%), Gaps = 76/318 (23%)

Query: 374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFK 433
           L L NN +          + +L +L L NNK++  + E  F  L KL     + N L+  
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVE- 116

Query: 434 INPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQY 493
                +PP                          L +L I   RI  K+P+  ++ +   
Sbjct: 117 -----IPPNLP---------------------SSLVELRIHDNRIR-KVPKGVFSGLRNM 149

Query: 494 YYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKN 553
             + + GN +                               A  G               
Sbjct: 150 NCIEMGGNPL-----------------------ENSGFEPGAFDGL-------------K 173

Query: 554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS 613
           + +L++S    +  IP        L  L+L +N         +   + L  L L +N++ 
Sbjct: 174 LNYLRISEAKLTG-IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230

Query: 614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFH----GDFP--I 667
            +   S      L  L +  N+L   +P  +      L ++ L +N        DF    
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVG 288

Query: 668 QLCRLASLQILDVAYNSL 685
              + A    + +  N +
Sbjct: 289 FGVKRAYYNGISLFNNPV 306

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.9 bits (226), Expect = 5e-20
 Identities = 51/243 (20%), Positives = 98/243 (40%), Gaps = 29/243 (11%)

Query: 89  LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLD 148
              L + + +    ++          A L  +  L+      T +    +  L+NL  L+
Sbjct: 15  DPALANAIKIAAGKSNVTDT---VTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLE 69

Query: 149 LSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHH 208
           L           ++ L  L+ +  L +S   L     ++  I  L S+K L L+  ++  
Sbjct: 70  LKDNQI----TDLAPLKNLTKITELELSGNPLK----NVSAIAGLQSIKTLDLTSTQITD 121

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
              L+    S+L  L L  NQ     P  L  LT+L++L + + Q +   L  L+ L+ L
Sbjct: 122 VTPLA--GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD--LTPLANLSKL 175

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP--TSFGKLCKLTSFSMAST 326
             L  +DN++  DIS   L +L ++ ++ L  N     +I   +       L   ++ + 
Sbjct: 176 TTLKADDNKIS-DIS--PLASLPNLIEVHLKNN-----QISDVSPLANTSNLFIVTLTNQ 227

Query: 327 KLS 329
            ++
Sbjct: 228 TIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 86.3 bits (214), Expect = 2e-18
 Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 22/215 (10%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +  +L  +  L   G     I+    +  L NL  L L   + T + P  L NL+ +  
Sbjct: 35  VTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDNQITDLAP--LKNLTKITE 89

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L+LSG       + +S ++GL  ++ L ++   ++  +     +  L +L+ L L   ++
Sbjct: 90  LELSGNPL----KNVSAIAGLQSIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQI 141

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
            +   L+    ++L  L +   Q     P  L NL+ L  L    N+ +   +  L+ L 
Sbjct: 142 TNISPLA--GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD--ISPLASLP 195

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           +L  + L++N++  D+S   L N +++  + L+  
Sbjct: 196 NLIEVHLKNNQIS-DVS--PLANTSNLFIVTLTNQ 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 49/239 (20%), Positives = 90/239 (37%), Gaps = 26/239 (10%)

Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
           +L +  ++      +      +  +   +TTL   G      I   +  L +L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72

Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTS 311
           NQ     L  L  L  +  L L  N L+ ++S   +  L SI+ L L+          T 
Sbjct: 73  NQITD--LAPLKNLTKITELELSGNPLK-NVS--AIAGLQSIKTLDLTST---QITDVTP 124

Query: 312 FGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRL 371
              L  L    +   +++ +IS + G+ +      L+ L +   Q+   LT  L    +L
Sbjct: 125 LAGLSNLQVLYLDLNQIT-NISPLAGLTN------LQYLSIGNAQV-SDLTP-LANLSKL 175

Query: 372 NFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSL 430
             L   +N++   I   L  + NL  + L NN+++         N + L        ++
Sbjct: 176 TTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQIS---DVSPLANTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 20/215 (9%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
             L  L  +  L+LSGN    ++    +A L +++ L+L+  + T + P  L  LSNLQ 
Sbjct: 79  APLKNLTKITELELSGN---PLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L L           IS L+GL+ L++L I    +S     L  + +L  L  LK    ++
Sbjct: 134 LYLDLNQI----TNISPLAGLTNLQYLSIGNAQVS----DLTPLANLSKLTTLKADDNKI 185

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                L+  +  +L  + L  NQ     P  L N ++L  + L +    +     +   N
Sbjct: 186 SDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP---VFYNN 238

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           +L V ++        I+   + +  +     L+WN
Sbjct: 239 NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWN 273

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 42/262 (16%)

Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF 321
              L +   ++   + +   ++     +L  I  L        G         L  L   
Sbjct: 15  DPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGT---GVTTIEGVQYLNNLIGL 68

Query: 322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI-----FGHLTN------------- 363
            +   +++ D++ +  +        +  L L G  +        L +             
Sbjct: 69  ELKDNQIT-DLAPLKNLTK------ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD 121

Query: 364 --QLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLV 421
              L     L  L L  NQ+    PL+   + NL+ L + N +++  ++ +   NL+KL 
Sbjct: 122 VTPLAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DLTPLA--NLSKLT 176

Query: 422 SFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDK 481
           +  A+ N  I  I         L  + L++  +    P  L     L  + +++  I+++
Sbjct: 177 TLKADDNK-ISDI-SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232

Query: 482 IPRAFWNSIFQYYYLNVSGNQI 503
                 N +        SG  I
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 42/274 (15%), Positives = 103/274 (37%), Gaps = 39/274 (14%)

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
            N   +    ++ ++ +    +    + TL+      T ++   +  L +L  L L++N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 612 LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR 671
           ++ + P   KN + +  L++  N L  ++          +  L L S +     P  L  
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 672 LASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG 731
           L++LQ+L +  N +       I+  + +        +   L    G+ ++ + T L    
Sbjct: 128 LSNLQVLYLDLNQI-----TNISPLAGL-------TNLQYLSI--GNAQVSDLTPL---- 169

Query: 732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 791
                 + L+ + ++    N  S   P+   +L  L  ++L +N  +      +    ++
Sbjct: 170 ------ANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD--VSPLANTSNL 219

Query: 792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
             +  +   ++ Q     +NL   N +   +   
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 48/252 (19%), Positives = 95/252 (37%), Gaps = 41/252 (16%)

Query: 389 LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLE 448
              +AN   +    + +  TV++     +T L +F     + +  I         L  LE
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAF----GTGVTTIEGVQYLN-NLIGLE 69

Query: 449 LRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVP 508
           L+   +    PL   L  K+ +L++S   + +    A   SI     L+++  QI     
Sbjct: 70  LKDNQITDLAPL-KNL-TKITELELSGNPLKNVSAIAGLQSI---KTLDLTSTQITD--- 121

Query: 509 KFDSPSMPLIITPSLLLGSIFDLSNNALS--GSIFHLICQGENFSKNIEFLKLSTNHFS- 565
                  PL    +L    +  L  N ++    +  L         N+++L +     S 
Sbjct: 122 -----VTPLAGLSNL---QVLYLDLNQITNISPLAGL--------TNLQYLSIGNAQVSD 165

Query: 566 -EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFS 624
              + +      +L TL   +N  +  +   + +L +L  ++L+NN++S V P    N S
Sbjct: 166 LTPLANL----SKLTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQISDVSP--LANTS 217

Query: 625 ILEALDVGENEL 636
            L  + +    +
Sbjct: 218 NLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 24/135 (17%), Positives = 53/135 (39%), Gaps = 14/135 (10%)

Query: 286 GLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAY 345
               L +  K+    ++        +   L  +T+ S   T ++  I  +  + +     
Sbjct: 14  PDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGVT-TIEGVQYLNN----- 64

Query: 346 ELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
            L  L L+  QI   L   L    ++  L LS N +  ++  ++  + ++++LDL++ ++
Sbjct: 65  -LIGLELKDNQI-TDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQI 119

Query: 406 NGTVSEIHFVNLTKL 420
                     NL  L
Sbjct: 120 TDVTPLAGLSNLQVL 134

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.6 bits (222), Expect = 1e-18
 Identities = 57/323 (17%), Positives = 109/323 (33%), Gaps = 55/323 (17%)

Query: 519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG---IPDCWMNW 575
           ++  L + + F LS N+   +I        +     E   L   + +E    + +C +N 
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN- 59

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
            +   L L   N + SLP ++     +  L +  N L   +P    +   LE LD  +N 
Sbjct: 60  -QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPAS---LEYLDACDNR 111

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
           L  ++P    E  + L  L + +N+     P        L+ ++   N L   +P    +
Sbjct: 112 LS-TLP----ELPASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQL-TMLPELPTS 161

Query: 696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG 755
                          +L     +N++     L             +L  ++D+S N    
Sbjct: 162 LE-------------VLSV--RNNQLTFLPEL-----------PESL-EALDVSTNLLE- 193

Query: 756 EIPVEVTNLQGLQS----LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
            +P         +          N  T  IP+NI  +    ++    N LS +I +S+S 
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252

Query: 812 LSFLNYLNLSNNNLNGEIPSSTQ 834
            +     +      +        
Sbjct: 253 QTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.2 bits (200), Expect = 6e-16
 Identities = 35/240 (14%), Positives = 68/240 (28%), Gaps = 46/240 (19%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNL---------- 141
           +     L L+  +     +P  L     +  L ++Q      +P    +L          
Sbjct: 58  INQFSELQLNRLNLS--SLPDNLPP--QITVLEITQNALI-SLPELPASLEYLDACDNRL 112

Query: 142 -------SNLQYLDLSGVYFELHAETISWLSGLSL--------------LEHLYISFVNL 180
                  ++L++LD+      +  E  + L  ++               LE L +    L
Sbjct: 113 STLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQL 172

Query: 181 SKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTT---LDLSGNQFQGQIPSR 237
           +   +         SL+ L +S   L   P +   N  S  T        N+    IP  
Sbjct: 173 TFLPELP------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HIPEN 225

Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
           + +L     + L  N  +S +   LS+                        +      + 
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 75.0 bits (184), Expect = 5e-14
 Identities = 49/315 (15%), Positives = 96/315 (30%), Gaps = 55/315 (17%)

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
           LS  S    +  ++ +   A D           +   +S        LL     +  + L
Sbjct: 13  LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVS--------LLKECLINQFSEL 64

Query: 224 DLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDIS 283
            L+       +P  L     +  L++  N   S           LE L   DNRL     
Sbjct: 65  QLNRLNLS-SLPDNLP--PQITVLEITQNALISL----PELPASLEYLDACDNRLS---- 113

Query: 284 SLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCV 343
           +L  +   S++ L +  N +L   +P     L  +   +  + +L+  + E+        
Sbjct: 114 TL-PELPASLKHLDVDNN-QL-TMLPELPALLEYI---NADNNQLTM-LPELPT------ 160

Query: 344 AYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES----LD 399
              LE L +R  Q+   L       + L+   +S N ++ S+P    +  + E       
Sbjct: 161 --SLEVLSVRNNQL-TFLPELPESLEALD---VSTNLLE-SLPAVPVRNHHSEETEIFFR 213

Query: 400 LSNNKLN------GTVSEIHFVNL------TKLVSFLANANSLIFKINPNWVPPFQLTVL 447
              N++        ++     + L      +++   L+   +      P           
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273

Query: 448 ELRSCHLGPRFPLWL 462
                 L      W 
Sbjct: 274 NTLHRPLADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 74.2 bits (182), Expect = 9e-14
 Identities = 63/403 (15%), Positives = 123/403 (30%), Gaps = 58/403 (14%)

Query: 458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPL 517
           F  W + +K       +       +     N       L ++   +          S+P 
Sbjct: 30  FSAWDKWEK-QALPGENRNEAVSLLKECLINQF---SELQLNRLNL---------SSLPD 76

Query: 518 IITPSLLLGSIFDLSNNALS------GSIFHLICQGENFSK------NIEFLKLSTNHFS 565
            + P +   ++ +++ NAL        S+ +L       S       +++ L +  N  +
Sbjct: 77  NLPPQI---TVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLT 133

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625
             +P+       L  +N  NN  T  LP      TSL  L++RNN+L+  +P   ++   
Sbjct: 134 M-LPELPAL---LEYINADNNQLT-MLPELP---TSLEVLSVRNNQLT-FLPELPES--- 181

Query: 626 LEALDVGENELVGSIPTWIGERFS---RLMILILRSNKFHGDFPIQLCRLASLQILDVAY 682
           LEALDV  N L  S+P             +    R N+     P  +  L     + +  
Sbjct: 182 LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILED 239

Query: 683 NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNL 742
           N L   I   ++  +A            +                               
Sbjct: 240 NPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL--------HRPLADAVTAWFPEN 291

Query: 743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNL-----FTGRIPDNIGVMRSIESLDFS 797
            +S    + +         T    L  L+ + +      F  ++   +  + +   L   
Sbjct: 292 KQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQ 351

Query: 798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDA 840
           +  ++    +S  +   L + NL    L  +           A
Sbjct: 352 SFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGA 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 69.2 bits (169), Expect = 3e-12
 Identities = 48/278 (17%), Positives = 92/278 (33%), Gaps = 44/278 (15%)

Query: 356 QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFV 415
             +    +   ++++    G + N+    +   L  +     L L+   L+ ++ +    
Sbjct: 24  GTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP 80

Query: 416 NLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS 475
            +T L       N+L     P    P  L  L+     L    P        L  LD+ +
Sbjct: 81  QITVLE---ITQNAL--ISLPEL--PASLEYLDACDNRLS-TLPELPA---SLKHLDVDN 129

Query: 476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNA 535
            +++  +P           Y+N   NQ+           +P + T SL    +  + NN 
Sbjct: 130 NQLT-MLP----ELPALLEYINADNNQLT---------MLPELPT-SL---EVLSVRNNQ 171

Query: 536 LSGSIFHLICQGENFSKNIEFLKLSTNHFS---EGIPDCWMNWPRLRTLNLGNNNFTGSL 592
           L+  +  L        +++E L +STN              +           N  T  +
Sbjct: 172 LT-FLPELP-------ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT-HI 222

Query: 593 PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630
           P +I +L    ++ L +N LS  I  S    +      
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 7e-11
 Identities = 51/312 (16%), Positives = 104/312 (33%), Gaps = 53/312 (16%)

Query: 308 IPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL-- 365
           I         L+  S     +S   ++    +      + E   L G        + L  
Sbjct: 3   IMLPINNNFSLSQNS-FYNTISGTYADYFSAWD-----KWEKQALPGENR-NEAVSLLKE 55

Query: 366 GQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEI--HFVNLTKLVSF 423
               + + L L+   +  S+P +L     +  L+++ N L      +     +L  L   
Sbjct: 56  CLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL----ISLPELPASLEYLD-- 106

Query: 424 LANANSLIFKINPNWVP--PFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDK 481
            A  N L      + +P  P  L  L++ +  L    P        L  ++  + +++  
Sbjct: 107 -ACDNRL------STLPELPASLKHLDVDNNQL-TMLPELPA---LLEYINADNNQLT-M 154

Query: 482 IPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIF 541
           +P            L+V  NQ+   +P+           P  L     D+S N L  S+ 
Sbjct: 155 LP----ELPTSLEVLSVRNNQL-TFLPEL----------PESL--EALDVSTNLLE-SLP 196

Query: 542 HLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS 601
            +  +  +  +   F +   N  +  IP+  ++     T+ L +N  +  +  S+   T+
Sbjct: 197 AVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255

Query: 602 LRSLNLRNNRLS 613
               +      S
Sbjct: 256 QPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 3e-10
 Identities = 64/447 (14%), Positives = 128/447 (28%), Gaps = 56/447 (12%)

Query: 234 IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI 293
           I   + N  SL   + + N  +     + S  +  E  +L        +S L    +   
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLR 353
            +L L+  + L   +P +     ++T   +    L   + E+           LE L   
Sbjct: 62  SELQLNRLN-L-SSLPDNLPP--QITVLEITQNALIS-LPELPA--------SLEYLDAC 108

Query: 354 GCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIH 413
             ++   L       K L+   + NNQ+   +P        LE ++  NN+L   + E  
Sbjct: 109 DNRL-STLPELPASLKHLD---VDNNQLT-MLPELPA---LLEYINADNNQLT-MLPE-- 157

Query: 414 FVNLTKLVSFLANANSLIFKINPNWVP--PFQLTVLELRSCHLG---PRFPLWLQLQKKL 468
               T L       N L       ++P  P  L  L++ +  L             ++  
Sbjct: 158 --LPTSLEVLSVRNNQL------TFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETE 209

Query: 469 NDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSI 528
                   RI+  IP    + +     + +  N +          S              
Sbjct: 210 IFFRCRENRITH-IPENILS-LDPTCTIILEDNPL---------SSRIRESLSQQTAQPD 258

Query: 529 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNF 588
           +       S S           +  +        +    +   W  +          N F
Sbjct: 259 YHGPRIYFSMSDGQQNTLHRPLADAV--TAWFPENKQSDVSQIWHAFEHE----EHANTF 312

Query: 589 TGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERF 648
           +  L   +    S R+ +    +++  +     +  + +       +   S    +   +
Sbjct: 313 SAFL-DRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTW 371

Query: 649 SRLMILILRSNKFHGDFPIQLCRLASL 675
           + L   +L      G F      L SL
Sbjct: 372 NNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 45/254 (17%), Positives = 84/254 (33%), Gaps = 68/254 (26%)

Query: 591 SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGE-RFS 649
           S+ + I    SL S N   N +SG     F  +   E   +   E      + + E   +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLIN 59

Query: 650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS 709
           +   L L         P  L     + +L++  N+L  ++P                   
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-ISLP------------------- 96

Query: 710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQS 769
                                          +L   +D   N  S  +P        L+ 
Sbjct: 97  ---------------------------ELPASL-EYLDACDNRLS-TLPEL---PASLKH 124

Query: 770 LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 829
           L++ +N  T  +P+       +E ++   NQL+  +P+  ++L     L++ NN L   +
Sbjct: 125 LDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLE---VLSVRNNQLT-FL 175

Query: 830 PSS-TQLQSFDASS 842
           P     L++ D S+
Sbjct: 176 PELPESLEALDVST 189

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.5 bits (212), Expect = 3e-18
 Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 23/232 (9%)

Query: 70  PDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
           P  +E       + +I          +  +L                L ++  +  + + 
Sbjct: 2   PLGSETITVPTPIKQIFS-DDAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSD 57

Query: 130 FTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLV 189
              +    +  L N+  L L+G         I  L+ L  L  L++    +   S     
Sbjct: 58  IKSVQG--IQYLPNVTKLFLNGN----KLTDIKPLANLKNLGWLFLDENKVKDLSS---- 107

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           +  L  LK L L    +     L   +   L +L L  N+      + L  LT L  L L
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLV--HLPQLESLYLGNNKI--TDITVLSRLTKLDTLSL 163

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             NQ +   +  L+ L  L+ L L  N +  D+    L  L ++  L L   
Sbjct: 164 EDNQISD--IVPLAGLTKLQNLYLSKNHIS-DLR--ALAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 80.9 bits (200), Expect = 1e-16
 Identities = 52/210 (24%), Positives = 85/210 (40%), Gaps = 20/210 (9%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +  EL  +  +  + +D + +Q    +  L N+  L L+  + T + P  L NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGW 94

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           L L         + +S L  L  L+ L +    +S  +     +  L  L+ L L   ++
Sbjct: 95  LFLDEN----KVKDLSSLKDLKKLKSLSLEHNGISDING----LVHLPQLESLYLGNNKI 146

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
               +LS    + L TL L  NQ    I   L  LT L++L L  N  +   L  L+ L 
Sbjct: 147 TDITVLS--RLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD--LRALAGLK 200

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
           +L+VL L       +       NL     +
Sbjct: 201 NLDVLELFSQECL-NKPINHQSNLVVPNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 52/209 (24%), Positives = 87/209 (41%), Gaps = 27/209 (12%)

Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
             F+     +L        +      L S+  +   ++   S  +  +  L ++  L L 
Sbjct: 21  DAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP--TSFGKLCKLTSFSMASTKLSQDI 332
            N+L  DI    L NL ++  L L  N     K+   +S   L KL S S+    +S DI
Sbjct: 77  GNKLT-DIK--PLANLKNLGWLFLDEN-----KVKDLSSLKDLKKLKSLSLEHNGIS-DI 127

Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
           + +          +LESLYL   +I   +T  L +  +L+ L L +NQ+   I   L  +
Sbjct: 128 NGL----VHLP--QLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGL 177

Query: 393 ANLESLDLSNNKLNGTVSEI-HFVNLTKL 420
             L++L LS N ++  +  +    NL  L
Sbjct: 178 TKLQNLYLSKNHIS-DLRALAGLKNLDVL 205

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 70.5 bits (173), Expect = 3e-13
 Identities = 38/191 (19%), Positives = 69/191 (36%), Gaps = 17/191 (8%)

Query: 89  LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLD 148
           L  LK+L  L L  N    ++    L  L  L+ L+L     + +    L +L  L+ L 
Sbjct: 86  LANLKNLGWLFLDEN---KVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLY 140

Query: 149 LSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHH 208
           L           I+ LS L+ L+ L +    +S        +  L  L+ L LS   +  
Sbjct: 141 LGNNKIT----DITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISD 192

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
              L+     +L  L+L   +   +  +   NL     +        +     +S   D 
Sbjct: 193 LRALA--GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDY 248

Query: 269 EVLSLEDNRLQ 279
           E  +++ +  +
Sbjct: 249 EKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 51/254 (20%), Positives = 92/254 (36%), Gaps = 41/254 (16%)

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
            +      NL   + T ++      L S+  +   N+ +  V     +    +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCI 693
           N+L   I          L  L L  NK        L  L  L+ L + +N +       I
Sbjct: 78  NKLT-DIKPL--ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGI-----SDI 127

Query: 694 NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNF 753
           N    +          + LY   G+NKI + T L          S L  + ++ +  N  
Sbjct: 128 NGLVHL-------PQLESLYL--GNNKITDITVL----------SRLTKLDTLSLEDNQI 168

Query: 754 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQSMSN 811
           S  +P+    L  LQ+L LS N     I D   +  +++++ L+  + +   +     SN
Sbjct: 169 SDIVPLA--GLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 812 LSFLNYLNLSNNNL 825
           L   N +  ++ +L
Sbjct: 223 LVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 79/288 (27%)

Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
           ++ +      I   +   +     +  L L+ N++    PL+   + NL  L L  NK+ 
Sbjct: 48  IDQIIANNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK 103

Query: 407 GTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK 466
              S     +L KL S     N  I  IN                          L    
Sbjct: 104 DLSS---LKDLKKLKSLSLEHNG-ISDING-------------------------LVHLP 134

Query: 467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG 526
           +L  L + + +I+D    +    +     L++  NQI                       
Sbjct: 135 QLESLYLGNNKITDITVLSRLTKL---DTLSLEDNQIS---------------------- 169

Query: 527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN 586
            I  L+                     ++ L LS NH S+           L  L L + 
Sbjct: 170 DIVPLAGL-----------------TKLQNLYLSKNHISDLRAL--AGLKNLDVLELFSQ 210

Query: 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
                       L    ++   +  L  V P    +    E  +V  +
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH 256

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 59/234 (25%), Positives = 86/234 (36%), Gaps = 44/234 (18%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQ 253
           S K L LSF  L H    S  +F  L  LDLS  + Q  I      +L+ L  L L  N 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG 313
             S  LG  S L+ L+ L   +  L   + +  + +L ++++L ++ N            
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN------------ 134

Query: 314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLG 366
               + SF +               FS      LE L L   +I          L     
Sbjct: 135 ---LIQSFKLP------------EYFSNLT--NLEHLDLSSNKIQSIYCTDLRVLHQMPL 177

Query: 367 QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
               L+   LS N M+  I     +   L+ L L  N+L  +V +  F  LT L
Sbjct: 178 LNLSLD---LSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSL 226

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 62/211 (29%), Positives = 97/211 (45%), Gaps = 14/211 (6%)

Query: 97  HLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFEL 156
           +LDLS N  + +       S   L+ L+LS+     +      +LS+L  L L+G    +
Sbjct: 32  NLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN--PI 88

Query: 157 HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSS-A 215
            +  +   SGLS L+ L     NL+   +    I  L +LKEL ++   +  F L    +
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 216 NFSSLTTLDLSGNQFQGQIP----SRLGNLTSLK-HLDLYSNQFNSAVLGWLSKLNDLEV 270
           N ++L  LDLS N+ Q  I       L  +  L   LDL  N  N    G   ++  L+ 
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKE 204

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           L+L+ N+L+  +     D LTS+QK+ L  N
Sbjct: 205 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 43/190 (22%), Positives = 66/190 (34%), Gaps = 11/190 (5%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
              L  LDLS  + Q I+      SL +L  L L+      +       LS+LQ L    
Sbjct: 51  FPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSK-ASDSLLVINSLHSLKELKLSFCELHHFP 210
                       +  L  L+ L ++   +           ++L +L+ L LS  ++    
Sbjct: 110 TNLASLENFP--IGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQSIY 165

Query: 211 LLSSANFSSLT----TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLN 266
                    +     +LDLS N     I         LK L L +NQ  S   G   +L 
Sbjct: 166 CTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224

Query: 267 DLEVLSLEDN 276
            L+ + L  N
Sbjct: 225 SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 49/265 (18%), Positives = 82/265 (30%), Gaps = 61/265 (23%)

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625
           + +P         + L+L  N        S  +   L+ L+L    +  +   ++++ S 
Sbjct: 24  DNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG--DFPIQLCRLASLQILDVAYN 683
           L  L +  N +  S+        S L  L+          +FPI    L +L+ L+VA+N
Sbjct: 78  LSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHN 134

Query: 684 SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV 743
            +                     QS  +   FS                       L  +
Sbjct: 135 LI---------------------QSFKLPEYFSN----------------------LTNL 151

Query: 744 RSIDISMNNFSGEIPVEV----TNLQGLQ-SLNLSHNLFTGRIPDNIGVMRSIESLDFSA 798
             +D+S N     I          +  L  SL+LS N     I         ++ L    
Sbjct: 152 EHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDT 209

Query: 799 NQLSGQIPQSMSNLSFLNYLNLSNN 823
           NQL          L+ L  + L  N
Sbjct: 210 NQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 25/140 (17%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           LK L  L+++ N  Q  ++P+Y ++L NL +L+LS  +   +    L  L  +  L+LS 
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS- 181

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
              +L    ++++           +F  +               LKEL L   +L   P 
Sbjct: 182 --LDLSLNPMNFIQPG--------AFKEI--------------RLKELALDTNQLKSVPD 217

Query: 212 LSSANFSSLTTLDLSGNQFQ 231
                 +SL  + L  N + 
Sbjct: 218 GIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 36/171 (21%), Positives = 61/171 (35%), Gaps = 20/171 (11%)

Query: 530 DLSNNALS----GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGN 585
           DLS   +     G+   L         ++  L L+ N         +     L+ L    
Sbjct: 58  DLSRCEIQTIEDGAYQSL--------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 586 NNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI-PTSFKNFSILEALDVGENELVGSIPTWI 644
            N        IG L +L+ LN+ +N +     P  F N + LE LD+  N++  SI    
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTD 168

Query: 645 GERFSRL----MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR 691
                ++    + L L  N  +        +   L+ L +  N  L ++P 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 56/239 (23%), Positives = 79/239 (33%), Gaps = 67/239 (28%)

Query: 600 TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
            S ++L+L  N L  +   SF +F  L+ LD+   E+  +I     +  S L  LIL  N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN 86

Query: 660 K--------FHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI 711
                    F G        L+SLQ L     +L       + NF               
Sbjct: 87  PIQSLALGAFSG--------LSSLQKLVAVETNL-----ASLENFPI-----------GH 122

Query: 712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLN 771
           L             +L  K   V +N I +           FS        NL  L+ L+
Sbjct: 123 L------------KTL--KELNVAHNLIQSF-----KLPEYFS--------NLTNLEHLD 155

Query: 772 LSHNLFTGRIPDNI-----GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
           LS N     I          +     SLD S N ++   P +   +  L  L L  N L
Sbjct: 156 LSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQL 212

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 85.8 bits (213), Expect = 1e-17
 Identities = 87/466 (18%), Positives = 144/466 (30%), Gaps = 84/466 (18%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGM----IPHQLGNLSNLQYLD 148
             +  LD+   +    +  + L  L   + + L     T      I   L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 149 LSGVYF-ELHAETISWLSGLSL----LEHLYISFVNLSKASDSLL--VINSLHSLKELKL 201
           L      ++    +    GL      ++ L +    L+ A   +L   + +L +L+EL L
Sbjct: 63  LRSNELGDVGVHCVL--QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 202 SFCELHH--FPLLSSA---NFSSLTTLDLSGNQFQGQ----IPSRLGNLTSLKHLDLYSN 252
           S   L      LL          L  L L            + S L      K L + +N
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180

Query: 253 QFNSAVLGWLSK-LND----LEVLSLEDNRLQGDIS----SLGLDNLTSIQKLLLSWNDE 303
             N A +  L + L D    LE L LE   +    +       + +  S+++L L  N  
Sbjct: 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGSNK- 238

Query: 304 LGGK-----IPTSFGKLCKLTSFSMASTKLS----QDISEILGIFSGCVAYELESLYLRG 354
           LG        P       +L +  +    ++     D+  +L          L+ L L G
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES-----LKELSLAG 293

Query: 355 CQIFGHLTNQLGQF-----KRLNFLGLSNNQM--DGSIPLS--LGQMANLESLDLSNNKL 405
            ++       L +       +L  L + +           S  L Q   L  L +SNN+L
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR----FPLW 461
                      + +L   L    S              L VL L  C +           
Sbjct: 354 EDA-------GVRELCQGLGQPGS-------------VLRVLWLADCDVSDSSCSSLAAT 393

Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYY----LNVSGNQI 503
           L     L +LD+S+  + D        S+ Q       L +     
Sbjct: 394 LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 82.3 bits (204), Expect = 2e-16
 Identities = 84/478 (17%), Positives = 149/478 (31%), Gaps = 105/478 (21%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH--HFPLLSSA--NFSSLTTLDL 225
           ++ L I    LS A  + L +  L   + ++L  C L       +SSA     +L  L+L
Sbjct: 5   IQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 226 SGNQFQGQIPSRLGNL-----TSLKHLDLYSNQFNSAVLGW------LSKLNDLEVLSLE 274
             N+        +          ++ L L +     A  G       L  L  L+ L L 
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA--GCGVLSSTLRTLPTLQELHLS 121

Query: 275 DNRLQGD----ISSLGLDNLTSIQKLLLSWN---DELGGKIPTSFGKLCKLTSFSMASTK 327
           DN L       +    LD    ++KL L +          + +           ++++  
Sbjct: 122 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
           +++    +L         +LE+L L  C +       L          +++         
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG-------IVASKA------- 227

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL 447
                 +L  L L +NKL               ++ L         ++P+     +L  L
Sbjct: 228 ------SLRELALGSNKLGDVG-----------MAELCPG-----LLHPSS----RLRTL 261

Query: 448 ELRSCHLGPR----FPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVS 499
            +  C +  +        L+ ++ L +L ++   + D+    +         Q   L V 
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 500 GNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 559
                         S  L     L       +SNN L  +    +CQG           L
Sbjct: 322 SCSF--TAACCSHFSSVLAQNRFL---LELQISNNRLEDAGVRELCQG-----------L 365

Query: 560 STNHFSEGIPDCWMNWPRLRTLNLGNNNFT----GSLPMSIGTLTSLRSLNLRNNRLS 613
                             LR L L + + +     SL  ++    SLR L+L NN L 
Sbjct: 366 GQPG------------SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 76/366 (20%), Positives = 129/366 (35%), Gaps = 56/366 (15%)

Query: 89  LLELKHLVHLDLSGNDFQGIQIPKYLASLV-----NLRYLNLSQARFTGM----IPHQLG 139
           L     L  L+L  N+   + +   +   +      ++ L+L     TG     +   L 
Sbjct: 52  LRVNPALAELNLRSNELGDVGV-HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR 110

Query: 140 NLSNLQYLDLSGVYF-ELHAETIS--WLSGLSLLEHLYISFVNLSKASDSLL--VINSLH 194
            L  LQ L LS     +   + +    L     LE L + + +LS AS   L  V+ +  
Sbjct: 111 TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 195 SLKELKLSFCELHH--FPLLSSA---NFSSLTTLDLSGNQFQGQ----IPSRLGNLTSLK 245
             KEL +S  +++     +L      +   L  L L            +   + +  SL+
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 246 HLDLYSNQFNSAVLGWLSK-----LNDLEVLSLEDNRLQGD-ISSLG--LDNLTSIQKLL 297
            L L SN+     +  L        + L  L + +  +       L   L    S+++L 
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 298 LSWNDELGGKIPTSFGKL-----CKLTSFSMASTKLS----QDISEILGIFSGCVAYELE 348
           L+ N+ LG +      +      C+L S  + S   +       S +L          L 
Sbjct: 291 LAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF-----LL 344

Query: 349 SLYLRGCQI----FGHLTNQLGQF-KRLNFLGLSNNQM--DGSIPLS--LGQMANLESLD 399
            L +   ++       L   LGQ    L  L L++  +       L+  L    +L  LD
Sbjct: 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404

Query: 400 LSNNKL 405
           LSNN L
Sbjct: 405 LSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 72/358 (20%), Positives = 118/358 (32%), Gaps = 46/358 (12%)

Query: 92  LKHLVHLDLSGNDF--QGIQ-IPKYLASLVNLRYLNLSQARFTG----MIPHQLGNLS-N 143
           L+    + L          + I   L     L  LNL            +   L   S  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 144 LQYLDLSGVYF-ELHAETI-SWLSGLSLLEHLYISFVNLSKASDSLLVINSLH---SLKE 198
           +Q L L            + S L  L  L+ L++S   L  A   LL    L     L++
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146

Query: 199 LKLSFCELHHF--PLLSSA--NFSSLTTLDLSGNQFQGQIPSRLG-----NLTSLKHLDL 249
           L+L +C L       L+S          L +S N         L      +   L+ L L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 250 YSNQFNSAVLGW------LSKLNDLEVLSLEDNRLQGD----ISSLGLDNLTSIQKLLLS 299
            S    S           ++    L  L+L  N+L       +    L   + ++ L + 
Sbjct: 207 ESCGVTSD--NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 300 WN---DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQ 356
                 +  G +         L   S+A  +L  + + +L         +LESL+++ C 
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 357 I----FGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMAN---LESLDLSNNKL 405
                  H ++ L Q + L  L +SNN++   G   L  G       L  L L++  +
Sbjct: 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 55.0 bits (133), Expect = 7e-08
 Identities = 77/514 (14%), Positives = 167/514 (32%), Gaps = 106/514 (20%)

Query: 346 ELESLYLRGCQI-FGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLS--LGQMANLESLDL 400
           +++SL ++  ++        L   ++   + L +  +       +S  L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR--- 457
            +N+L               V  +               P  ++  L L++C L      
Sbjct: 64  RSNELGDVG-----------VHCVLQGLQ---------TPSCKIQKLSLQNCCLTGAGCG 103

Query: 458 -FPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
                L+    L +L +S   + D     +     +   +   L +    +     +  +
Sbjct: 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQG-ENFSKNIEFLKLSTNHFSE----G 567
               L   P         +SNN ++ +   ++CQG ++    +E LKL +   +      
Sbjct: 164 SV--LRAKPDF---KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGS-----LPMSIGTLTSLRSLNLRNNRLSGV----IPT 618
           +     +   LR L LG+N           P  +   + LR+L +    ++      +  
Sbjct: 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278

Query: 619 SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL 678
             +    L+ L +  NE        +G+  +RL+   L                  L+ L
Sbjct: 279 VLRAKESLKELSLAGNE--------LGDEGARLLCETLLEPGC------------QLESL 318

Query: 679 DVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS 738
            V   S            S  ++  + ++    L     +N++ +     +   L +  S
Sbjct: 319 WVKSCSF------TAACCSHFSSVLAQNRFLLELQI--SNNRLEDAGVRELCQGLGQPGS 370

Query: 739 ILNLVRSIDISMNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL 794
           +L   R + ++  + S      +   +     L+ L+LS+N        + G+++ +ES+
Sbjct: 371 VL---RVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-----GDAGILQLVESV 422

Query: 795 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 828
                               L  L L +   + E
Sbjct: 423 --------------RQPGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 5e-04
 Identities = 44/235 (18%), Positives = 78/235 (33%), Gaps = 38/235 (16%)

Query: 38  IGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVH 97
           +GD G      G+L  +     L +  +   +               +   L   + L  
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIW-ECGITAKGCGD---------LCRVLRAKESLKE 288

Query: 98  LDLSGNDFQGIQIPKYLASLV-----NLRYLNLSQARFTG----MIPHQLGNLSNLQYLD 148
           L L+GN+       + L   +      L  L +    FT          L     L  L 
Sbjct: 289 LSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 149 LSGVYFELHAETISWLS-----GLSLLEHLYISFVNLSKASDSLL--VINSLHSLKELKL 201
           +S     L    +  L        S+L  L+++  ++S +S S L   + + HSL+EL L
Sbjct: 348 ISN--NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405

Query: 202 SFCELHH--FPLLSSA---NFSSLTTLDLSGNQF----QGQIPSRLGNLTSLKHL 247
           S   L       L  +       L  L L    +    + ++ +   +  SL+ +
Sbjct: 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 33/170 (19%), Positives = 66/170 (38%), Gaps = 14/170 (8%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
           +  ++  L ++ L+  +   +     +    N++ L ++    T   P  +  LSNL+ L
Sbjct: 39  TEAQMNSLTYITLANINVTDL---TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERL 93

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC-EL 206
            + G   ++ ++ I  LSGL+ L  L IS          L  IN+L  +  + LS+   +
Sbjct: 94  RIMGK--DVTSDKIPNLSGLTSLTLLDISHSAHD--DSILTKINTLPKVNSIDLSYNGAI 149

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
                L       L +L++  +         + +   L  L  +S     
Sbjct: 150 TDIMPLK--TLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.5 bits (189), Expect = 5e-16
 Identities = 27/137 (19%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 165 SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLD 224
           + ++ L ++ ++ +N++  +     I   H++K+L ++     ++  +S    S+L  L 
Sbjct: 41  AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNIHATNYNPIS--GLSNLERLR 94

Query: 225 LSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISS 284
           + G          L  LTSL  LD+  +  + ++L  ++ L  +  + L  N    DI  
Sbjct: 95  IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM- 153

Query: 285 LGLDNLTSIQKLLLSWN 301
             L  L  ++ L + ++
Sbjct: 154 -PLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.5 bits (176), Expect = 3e-14
 Identities = 21/194 (10%), Positives = 66/194 (34%), Gaps = 19/194 (9%)

Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
           + F +     L  +       +    + SL ++ L +       L  +   ++++ L++ 
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTD--LTGIEYAHNIKDLTIN 74

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS-QDIS 333
           +     + +   +  L+++++L +    ++      +   L  LT   ++ +      ++
Sbjct: 75  NIHAT-NYN--PISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 334 EILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMA 393
           +I  +       ++ S+ L        +   L     L  L +  + +     +      
Sbjct: 131 KINTL------PKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIE--DFP 181

Query: 394 NLESLDLSNNKLNG 407
            L  L   +  + G
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 27/159 (16%), Positives = 58/159 (36%), Gaps = 36/159 (22%)

Query: 263 SKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFS 322
           +++N L  ++L +  +  D++  G++   +I+ L ++          T++  +  L++  
Sbjct: 41  AQMNSLTYITLANINVT-DLT--GIEYAHNIKDLTINNI-----HA-TNYNPISGLSN-- 89

Query: 323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD 382
                                   LE L + G  +       L     L  L +S++  D
Sbjct: 90  ------------------------LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 383 GSIPLSLGQMANLESLDLSNNKLNGTVSEI-HFVNLTKL 420
            SI   +  +  + S+DLS N     +  +     L  L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSL 164

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 10/134 (7%)

Query: 552 KNIEFLKLSTNHFS--EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRN 609
            NI+ L ++  H +    I         L  L +   + T     ++  LTSL  L++ +
Sbjct: 66  HNIKDLTINNIHATNYNPISGL----SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121

Query: 610 NRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQL 669
           +     I T       + ++D+  N  +  I     +    L  L ++ +  H    I+ 
Sbjct: 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRGIE- 178

Query: 670 CRLASLQILDVAYN 683
                L  L     
Sbjct: 179 -DFPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 803
           + + I+  + +   P+    L  L+ L +     T     N+  + S+  LD S +    
Sbjct: 69  KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 804 QIPQSMSNLSFLNYLNLSNNNLNGEIP---SSTQLQSFDASS 842
            I   ++ L  +N ++LS N    +I    +  +L+S +   
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQF 168

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 803
             +DIS +     I  ++  L  + S++LS+N     I   +  +  ++SL+   + +  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD 173

Query: 804 QIPQSMSNLSFLNYLNLSNNNLNGE 828
                + +   LN L   +  + G+
Sbjct: 174 YRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 33/212 (15%)

Query: 568 IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE 627
           IPD        +    G    + +  ++   + SL  + L N  ++ +  T  +    ++
Sbjct: 17  IPD-----STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIK 69

Query: 628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG 687
            L +         P       S L  L +       D    L  L SL +LD+++++   
Sbjct: 70  DLTINNIHATNYNPI---SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747
           +I   IN    + + D            S +  I +   L            L  ++S++
Sbjct: 127 SILTKINTLPKVNSID-----------LSYNGAITDIMPL----------KTLPELKSLN 165

Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 779
           I  +       +E  +   L  L        G
Sbjct: 166 IQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.2 bits (195), Expect = 5e-16
 Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 17/230 (7%)

Query: 85  INPSLLELKHLV-HLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQ---LGN 140
           +      L++L+  +D   +  Q   I K L    +L+ L +  AR    I      +  
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSL----SLKRLTVRAARIPSRILFGALRVLG 93

Query: 141 LSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSL--HSLKE 198
           +S LQ L L  +     A      +    L  L +  V+ +     L  +       LK 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 199 LKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR----LGNLTSLKHLDLYSNQF 254
           L ++     +F       F +L+TLDLS N   G+             +L+ L L +   
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 255 NS---AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
            +         +    L+ L L  N L+    +   D  + +  L LS+ 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 77.6 bits (191), Expect = 2e-15
 Identities = 47/209 (22%), Positives = 72/209 (34%), Gaps = 14/209 (6%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVN-----LRYLNLSQARFTGMIP 135
           + G   P LLE        L+  +        +LA L       L+ L+++QA       
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 136 HQLGNLSNLQYLDLSGVYF--ELHAETISWLSGLSLLEHLYISFVNLSKASDSL-LVINS 192
            Q+     L  LDLS      E    +         L+ L +    +   S     +  +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226

Query: 193 LHSLKELKLSFCELHHFP-LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
              L+ L LS   L       S    S L +L+LS    + Q+P  L     L  LDL  
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSY 283

Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
           N+ +        +L  +  LSL+ N    
Sbjct: 284 NRLDR--NPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 46/228 (20%), Positives = 80/228 (35%), Gaps = 19/228 (8%)

Query: 467 KLNDLDISSTRISDKIPRAF--WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLL 524
            L  L + + RI  +I         I     L +   ++ G        + P ++  +  
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG-------TAPPPLLEATGP 121

Query: 525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLG 584
             +I +L N + +     L    +     ++ L ++  H      +    +P L TL+L 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 585 NNNFTGSLPMSI----GTLTSLRSLNLRNNR---LSGVIPTSFKNFSILEALDVGENELV 637
           +N   G   +          +L+ L LRN      SGV          L+ LD+  N L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR 241

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
            +      +  S+L  L L                A L +LD++YN L
Sbjct: 242 DAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLDLSYNRL 286

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.3 bits (185), Expect = 1e-14
 Identities = 46/280 (16%), Positives = 88/280 (31%), Gaps = 29/280 (10%)

Query: 556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP---MSIGTLTSLRSLNLRNNRL 612
            LK        G     +    L+ L +        +    + +  ++ L+ L L N  +
Sbjct: 48  LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107

Query: 613 SGVIPTSFKNFSI--LEALDVGENELVGSIPTWIGERFSRLM----ILILRSNKFHGDFP 666
           +G  P      +   L  L++           W+ E    L     +L +          
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSC 166

Query: 667 IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS 726
            Q+    +L  LD++ N  LG           + +A    +   +      +  +   + 
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERG--------LISALCPLKFPTLQVLALRNAGMETPSG 218

Query: 727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI 785
           +          +    ++ +D+S N+               L SLNLS      ++P  +
Sbjct: 219 VCSALA-----AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272

Query: 786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 825
                +  LD S N+L    P S   L  +  L+L  N  
Sbjct: 273 P--AKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 7e-13
 Identities = 48/278 (17%), Positives = 87/278 (31%), Gaps = 47/278 (16%)

Query: 347 LESLYLRGCQIFGHLTNQLGQF---KRLNFLGLSNNQMDGSIPLSLGQMA--NLESLDLS 401
           L+ L +R  +I   +     +      L  L L N ++ G+ P  L +    +L  L+L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 402 NNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLW 461
           N       + +                 L   + P       L VL +   H        
Sbjct: 130 NVSWATRDAWL---------------AELQQWLKPG------LKVLSIAQAHSLNFSCEQ 168

Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYY-----YLNVSGNQIYGGVPKFDSPSMP 516
           +++   L+ LD+S      +      +++          L +    +             
Sbjct: 169 VRVFPALSTLDLSDNPELGERG--LISALCPLKFPTLQVLALRNAGM----ETPSGVCSA 222

Query: 517 LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWP 576
           L      L     DLS+N+L  +     C    +   +  L LS     + +P       
Sbjct: 223 LAAARVQL--QGLDLSHNSLRDAAGAPSCD---WPSQLNSLNLSFTGLKQ-VPKGL--PA 274

Query: 577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG 614
           +L  L+L  N      P S   L  + +L+L+ N    
Sbjct: 275 KLSVLDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 67.6 bits (165), Expect = 3e-12
 Identities = 56/283 (19%), Positives = 92/283 (32%), Gaps = 24/283 (8%)

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLND---L 268
           L     S    L     +      + +    SLK L + + +  S +L    ++     L
Sbjct: 38  LYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGL 97

Query: 269 EVLSLEDNRLQG----DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA 324
           + L+LE+  + G     +      +L  +    +SW                 L   S+A
Sbjct: 98  QELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHL----TNQLGQFKRLNFLGLSNNQ 380
                    E + +F       L +L L      G           +F  L  L L N  
Sbjct: 158 QAHSLNFSCEQVRVFP-----ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212

Query: 381 M---DGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPN 437
           M    G           L+ LDLS+N L            ++L S   +   L  K  P 
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPK 270

Query: 438 WVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISD 480
            +P  +L+VL+L    L  R P   +L  ++ +L +      D
Sbjct: 271 GLPA-KLSVLDLSYNRLD-RNPSPDELP-QVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 43/262 (16%), Positives = 78/262 (29%), Gaps = 37/262 (14%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW--MNWPRLRTLNLGNNN 587
            +    +   I     +    S  ++ L L     +   P        P L  LNL N +
Sbjct: 74  TVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 588 FTGSLP----MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP-- 641
           +         +       L+ L++             + F  L  LD+ +N  +G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 642 -TWIGERFSRLMILILRSNKFH---GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
                 +F  L +L LR+       G           LQ LD+++NSL         +  
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCD 250

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
             +  +S + S            + +               +   +  +D+S N      
Sbjct: 251 WPSQLNSLNLSF---------TGLKQVPK-----------GLPAKLSVLDLSYNRLD-RN 289

Query: 758 PVEVTNLQGLQSLNLSHNLFTG 779
           P     L  + +L+L  N F  
Sbjct: 290 PSP-DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 54/280 (19%), Positives = 81/280 (28%), Gaps = 63/280 (22%)

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS---FKNFSILEALDVGENELV 637
           L   +          I    SL+ L +R  R+   I          S L+ L +   E+ 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 638 GSIPTWIGE-RFSRLMILILRSNKFHGDFP----IQLCRLASLQILDVAYNSLLGTIPRC 692
           G+ P  + E     L IL LR+  +         +Q      L++L +A    L      
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168

Query: 693 INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN 752
           +  F A                                            + ++D+S N 
Sbjct: 169 VRVFPA--------------------------------------------LSTLDLSDNP 184

Query: 753 FSGEIPVEVT----NLQGLQSLNLSHNLFT---GRIPDNIGVMRSIESLDFSANQLSGQI 805
             GE  +           LQ L L +       G           ++ LD S N L    
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 806 PQSM-SNLSFLNYLNLSNNNLNGEIPS--STQLQSFDASS 842
                   S LN LNLS   L  ++P     +L   D S 
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSY 283

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.1 bits (122), Expect = 7e-07
 Identities = 33/222 (14%), Positives = 64/222 (28%), Gaps = 28/222 (12%)

Query: 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLAS---LQILDVAY 682
           LE L    +            +   L  L +R+ +          R+     LQ L +  
Sbjct: 45  LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104

Query: 683 NSLLGTIPRCI--NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSIL 740
             + GT P  +       +   +  + S     A+  + +      L             
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL------------- 151

Query: 741 NLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI----GVMRSIESLDF 796
              + + I+  +       +V     L +L+LS N   G              +++ L  
Sbjct: 152 ---KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 797 SANQ---LSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 835
                   SG      +    L  L+LS+N+L     + +  
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 79  SMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL 138
               G  +        L  LDLS N  +             L  LNLS       +P  L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGL 272

Query: 139 GNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYIS 176
              + L  LDLS        +       L  + +L + 
Sbjct: 273 --PAKLSVLDLSYNRL----DRNPSPDELPQVGNLSLK 304

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 77.0 bits (190), Expect = 1e-15
 Identities = 43/223 (19%), Positives = 80/223 (35%), Gaps = 25/223 (11%)

Query: 74  EAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGM 133
           E+ QR   + ++ P    L + V  +L       +        L  ++  N   +    +
Sbjct: 1   ESIQRPTPINQVFP-DPGLANAVKQNLGKQSVTDL---VSQKELSGVQNFNGDNSNIQSL 56

Query: 134 IPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSL 193
               +   +NL+ L LS          +S L  L+ LE L ++   L   +         
Sbjct: 57  AG--MQFFTNLKELHLSHNQI----SDLSPLKDLTKLEELSVNRNRLKNLNGI-----PS 105

Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
             L  L L   EL     L   +  +L  L +  N+ +  I   LG L+ L+ LDL+ N+
Sbjct: 106 ACLSRLFLDNNELRDTDSLI--HLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNE 161

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
             +   G L++L  +  + L   +      +  +     +   
Sbjct: 162 ITN--TGGLTRLKKVNWIDLTGQK----CVNEPVKYQPELYIT 198

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 43/218 (19%), Positives = 82/218 (37%), Gaps = 25/218 (11%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            S  EL  + + +   ++ Q +     +    NL+ L+LS  + + + P  L +L+ L+ 
Sbjct: 35  VSQKELSGVQNFNGDNSNIQSL---AGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89

Query: 147 LDLSGVYFELHAETISWLSGLSL--LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC 204
           L ++          +  L+G+    L  L++    L         +  L +L+ L +   
Sbjct: 90  LSVNR-------NRLKNLNGIPSACLSRLFLDNNELRDTDS----LIHLKNLEILSIRNN 138

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK 264
           +L    +L     S L  LDL GN+        L  L  +  +DL   +  +  + +  +
Sbjct: 139 KLKSIVMLG--FLSKLEVLDLHGNEITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPE 194

Query: 265 LNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND 302
           L     +   D R    IS   + N  S     + W  
Sbjct: 195 LYITNTVKDPDGRW---ISPYYISNGGSYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 38/185 (20%), Positives = 76/185 (41%), Gaps = 24/185 (12%)

Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
              L +    +L         L    +L+ ++  + +++ +Q  ++  G+   T++++L 
Sbjct: 15  DPGLANAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNIQ-SLA--GMQFFTNLKELH 69

Query: 298 LSWNDELGGKIP--TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC 355
           LS N     +I   +    L KL   S+   +L  +++ I           L  L+L   
Sbjct: 70  LSHN-----QISDLSPLKDLTKLEELSVNRNRLK-NLNGIPSA-------CLSRLFLDNN 116

Query: 356 QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFV 415
           ++     + L   K L  L + NN++  SI   LG ++ LE LDL  N++  T       
Sbjct: 117 ELR-DTDS-LIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGGLTRLK 172

Query: 416 NLTKL 420
            +  +
Sbjct: 173 KVNWI 177

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.1 bits (190), Expect = 2e-15
 Identities = 45/205 (21%), Positives = 71/205 (34%), Gaps = 31/205 (15%)

Query: 210 PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLE 269
           P+   +  +S   ++         +P  L        L L  N   +  L  L     L 
Sbjct: 2   PICEVSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLT 58

Query: 270 VLSLEDNRLQGDISSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
            L+L+   L      L +   L  +  L LS N      +P     L  LT   ++  +L
Sbjct: 59  QLNLDRAELT----KLQVDGTLPVLGTLDLSHNQL--QSLPLLGQTLPALTVLDVSFNRL 112

Query: 329 SQDISEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQM 381
              +    G   G    EL+ LYL+G ++                    L  L L+NN +
Sbjct: 113 -TSLPL--GALRGLG--ELQELYLKGNELKTLPPGLLTPTPK-------LEKLSLANNNL 160

Query: 382 DGSIPLSL-GQMANLESLDLSNNKL 405
              +P  L   + NL++L L  N L
Sbjct: 161 T-ELPAGLLNGLENLDTLLLQENSL 184

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 25/213 (11%)

Query: 95  LVHLDLSGNDFQGI--QIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152
            + ++    +   +   +P       +   L+LS+          L   + L  L+L   
Sbjct: 12  HLEVNCDKRNLTALPPDLP------KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 153 YFELHAETISWLSGLSLLEHLYISFVNLSKASDSL-LVINSLHSLKELKLSFCELHHFPL 211
                   +     L +L  L +S   L     SL L+  +L +L  L +SF  L   PL
Sbjct: 66  ----ELTKLQVDGTLPVLGTLDLSHNQLQ----SLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
            +      L  L L GN+ +  +P  L      L+ L L +N       G L+ L +L+ 
Sbjct: 118 GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 271 LSLEDNRLQGDISSL--GLDNLTSIQKLLLSWN 301
           L L++N L     ++  G      +    L  N
Sbjct: 177 LLLQENSLY----TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 42/198 (21%), Positives = 66/198 (33%), Gaps = 33/198 (16%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
               T L LS N       + L   T L  L+L   +     L     L  L  L L  N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHN 87

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKI----PTSFGKLCKLTSFSMASTKLSQDI 332
           +LQ  +  L    L ++  L +S+N     ++      +   L +L    +   +L + +
Sbjct: 88  QLQ-SLPLL-GQTLPALTVLDVSFN-----RLTSLPLGALRGLGELQELYLKGNEL-KTL 139

Query: 333 SEILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSI 385
               G+ +     +LE L L    +          L N       L+ L L  N +  +I
Sbjct: 140 PP--GLLTPTP--KLEKLSLANNNLTELPAGLLNGLEN-------LDTLLLQENSLY-TI 187

Query: 386 PLSLGQMANLESLDLSNN 403
           P        L    L  N
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.2 bits (154), Expect = 6e-11
 Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
              L  L+L   +   +Q+     +L  L  L+LS  +    +P     L  L  LD+S 
Sbjct: 54  YTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS- 108

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
            +  L +  +  L GL  L+ LY+    L      LL       L++L L+   L   P 
Sbjct: 109 -FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL--TPTPKLEKLSLANNNLTELPA 165

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
                  +L TL L  N     IP        L    L+ N
Sbjct: 166 GLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 12/137 (8%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
           +   L LS N          M + RL  LNL     T  L +  GTL  L +L+L +N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQL 89

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQ 668
              +P   +    L  LDV  N L  S+P         L  L L+ N+      G     
Sbjct: 90  Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145

Query: 669 LCRLASLQILDVAYNSL 685
                 L+ L +A N+L
Sbjct: 146 --PTPKLEKLSLANNNL 160

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
            +  L L     ++ +       P L TL+L +N    SLP+   TL +L  L++  NRL
Sbjct: 56  RLTQLNLDRAELTK-LQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQ 668
           + +   + +    L+ L +  NEL  ++P  +     +L  L L +N       G     
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-- 169

Query: 669 LCRLASLQILDVAYNSLLGTIPR 691
              L +L  L +  NS L TIP+
Sbjct: 170 --GLENLDTLLLQENS-LYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 7/108 (6%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
              +N    N T +LP  +        L+L  N L      +   ++ L  L++   EL 
Sbjct: 12  HLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL- 67

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
             +          L  L L  N+     P+    L +L +LDV++N L
Sbjct: 68  TKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 43/235 (18%), Positives = 78/235 (33%), Gaps = 51/235 (21%)

Query: 394 NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVLELRSC 452
           +   ++     L     ++   + T L   L+     ++  +   + P+ +LT L L   
Sbjct: 11  SHLEVNCDKRNLTALPPDL-PKDTTIL--HLSENL--LYTFSLATLMPYTRLTQLNLDRA 65

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
            L  +  +   L   L  LD+S  ++   +P      +     L+VS N++         
Sbjct: 66  ELT-KLQVDGTL-PVLGTLDLSHNQLQS-LPLLGQT-LPALTVLDVSFNRL--------- 112

Query: 513 PSMPLIITPSLLLGSIFDLSNNALSGSIF-HLICQGENFSKNIEFLKLSTNHFSEGIPDC 571
                                 +L       L          ++ L L  N      P  
Sbjct: 113 ---------------------TSLPLGALRGL--------GELQELYLKGNELKTLPPGL 143

Query: 572 WMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625
               P+L  L+L NNN T  LP  +   L +L +L L+ N L  +    F +  +
Sbjct: 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL 197

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 33/209 (15%), Positives = 65/209 (31%), Gaps = 15/209 (7%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF--E 155
                +     +IP  L    N   L     +   +         +L+ +++S       
Sbjct: 14  FLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 69

Query: 156 LHAETISWLSGLSLLEHLYISFVN-LSKASDSLLVINSLHSLKELKLSFCELHHFPLLSS 214
           + A+     S L  L  + I   N L   +       +L +L+ L +S   + H P +  
Sbjct: 70  IEADV---FSNLPKLHEIRIEKANNLLYINPEAF--QNLPNLQYLLISNTGIKHLPDVHK 124

Query: 215 ANFSSLTTLDLSGNQFQGQIPSR-LGNLTS-LKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
            +      LD+  N     I       L+     L L  N          +     E+  
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
            ++N L+ ++ +      +    L +S  
Sbjct: 185 SDNNNLE-ELPNDVFHGASGPVILDISRT 212

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 35/222 (15%), Positives = 70/222 (31%), Gaps = 30/222 (13%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQA-RFTGMIPHQLGNLSNLQYLDLS 150
              L  +++S ND   +      ++L  L  + + +A     + P    NL NLQYL +S
Sbjct: 53  FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112

Query: 151 ---------GVYFELHAETISWLSGLSLLEHL-YISFVNLSKASDSLLVINSLHSLKELK 200
                            + +  +     +  +   SFV LS                 L 
Sbjct: 113 NTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS------------FESVILW 160

Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYSNQFNSAVL 259
           L+   +      +              N  + ++P+      +    LD+   + +S   
Sbjct: 161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS 219

Query: 260 GWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
             L  L  L   S  + +         L+ L ++ +  L++ 
Sbjct: 220 YGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 7e-10
 Identities = 43/251 (17%), Positives = 79/251 (31%), Gaps = 27/251 (10%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTS-FKNFSILEALDVGEN 634
                L             +      L  + +  N +  VI    F N   L  + + + 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN 694
             +  I     +    L  L++ +        +         +LD+  N  + TI R  N
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N 147

Query: 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS 754
           +F  ++        S IL+     N I E  +    G          L        NN  
Sbjct: 148 SFVGLSF------ESVILWL--NKNGIQEIHNSAFNG--------TQLDELNLSDNNNLE 191

Query: 755 GEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF-SANQLSGQIPQSMSNL 812
            E+P +V     G   L++S       +P     + +++ L   S   L  ++P ++  L
Sbjct: 192 -ELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLK-KLP-TLEKL 245

Query: 813 SFLNYLNLSNN 823
             L   +L+  
Sbjct: 246 VALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 37/237 (15%), Positives = 77/237 (32%), Gaps = 15/237 (6%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE-LHHFPLLSSANFSSLTTLDLS-G 227
              L      L          +    L+++++S  + L        +N   L  + +   
Sbjct: 32  AIELRFVLTKLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 228 NQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL 287
           N      P    NL +L++L + +                  +L ++DN     I     
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 288 DNLTS-IQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYE 346
             L+     L L+ N  +  +I  S     +L   +++     +++     +F G  A  
Sbjct: 150 VGLSFESVILWLNKN-GI-QEIHNSAFNGTQLDELNLSDNNNLEELPN--DVFHG--ASG 203

Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNN 403
              L +   +I    +  L   K+L      N +    +P +L ++  L    L+  
Sbjct: 204 PVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 47/264 (17%), Positives = 90/264 (34%), Gaps = 33/264 (12%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
           R      +  T  +P  +    +   L     +L  +   +F  F  LE +++ +N+++ 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 639 SIPTWIGERFSRL----MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN 694
            I   +   FS L     I I ++N      P     L +LQ L ++    +  +P    
Sbjct: 69  VIEADV---FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLP---- 120

Query: 695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS 754
                        S   +     DN  +   ++    F      +      + ++ N   
Sbjct: 121 -------DVHKIHSLQKVLLDIQDNINI--HTIERNSF----VGLSFESVILWLNKNGIQ 167

Query: 755 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLS 813
            EI     N   L  LNLS N     +P+++         LD S  ++       + NL 
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 814 FLNYLNLSNNNLNGEIPSSTQLQS 837
            L   +  N     ++P+  +L +
Sbjct: 227 KLRARSTYNLK---KLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 31/191 (16%), Positives = 60/191 (31%), Gaps = 13/191 (6%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQL--GNLSNLQYLDL 149
           L +L +L +S    + +    +    +    L++        I      G       L L
Sbjct: 103 LPNLQYLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 150 SGVYF-ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHH 208
           +     E+H       +G  L E       NL +  + +   +       L +S   +H 
Sbjct: 162 NKNGIQEIHNSA---FNGTQLDELNLSDNNNLEELPNDVF--HGASGPVILDISRTRIHS 216

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
            P     N   L        +   ++P+ L  L +L    L       A   W  ++++L
Sbjct: 217 LPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPSHCCAFANWRRQISEL 272

Query: 269 EVLSLEDNRLQ 279
             +  +    Q
Sbjct: 273 HPICNKSILRQ 283

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 45/293 (15%), Positives = 80/293 (27%), Gaps = 66/293 (22%)

Query: 368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVS-FLAN 426
            +    L     ++      +     +LE +++S N +   +    F NL KL    +  
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486
           AN+L++      + P     L                    L  L IS+T I   +P   
Sbjct: 89  ANNLLY------INPEAFQNL------------------PNLQYLLISNTGIK-HLPDVH 123

Query: 487 WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546
                Q   L++  N                         +I  +  N+  G        
Sbjct: 124 KIHSLQKVLLDIQDN------------------------INIHTIERNSFVG-------- 151

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
               S     L L+ N   E     +            NNN            +    L+
Sbjct: 152 ---LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
           +   R+  +     +N   L A      + + ++     E+   LM   L   
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 38/247 (15%), Positives = 75/247 (30%), Gaps = 35/247 (14%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLN 606
            +  +N   L+             +  +  L  + +  N+    +   +   L  L  + 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 607 LRN-NRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF---- 661
           +   N L  + P +F+N   L+ L +    +   +P        + ++L ++ N      
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 662 -HGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL--YAFSG- 717
               F   L       IL +  N +        N         S + + + L    F G 
Sbjct: 145 ERNSFV-GLSFE--SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA 201

Query: 718 ---------DNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ 768
                      +I    SL   G         NL +    S  N   ++P  +  L  L 
Sbjct: 202 SGPVILDISRTRI---HSLPSYGLE-------NLKKLRARSTYNLK-KLPT-LEKLVALM 249

Query: 769 SLNLSHN 775
             +L++ 
Sbjct: 250 EASLTYP 256

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 73.0 bits (179), Expect = 7e-14
 Identities = 43/196 (21%), Positives = 73/196 (37%), Gaps = 10/196 (5%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
                  + H+DLS +  +   +   L+    L+ L+L   R +  I + L   SNL  L
Sbjct: 88  EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147

Query: 148 DLSGVYFELHAETISWL-SGLSLLEHLYISF-VNLSKASDSLLVINSLHSLKELKLSFCE 205
           +LSG         +  L S  S L+ L +S+  + ++    + V +   ++ +L LS   
Sbjct: 148 NLSGCSG-FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206

Query: 206 L----HHFPLLSSANFSSLTTLDLSG-NQFQGQIPSRLGNLTSLKHLDLYS-NQFNSAVL 259
                     L      +L  LDLS     +         L  L+HL L          L
Sbjct: 207 KNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 265

Query: 260 GWLSKLNDLEVLSLED 275
             L ++  L+ L +  
Sbjct: 266 LELGEIPTLKTLQVFG 281

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 44/251 (17%), Positives = 94/251 (37%), Gaps = 27/251 (10%)

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCE-LHHFPLLSSANFSSLTTLDLSGNQF-QGQIP 235
           ++L+  +    V   L S   +           PL    +   +  +DLS +      + 
Sbjct: 52  LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111

Query: 236 SRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL----DNLT 291
             L   + L++L L   + +  ++  L+K ++L  L+L         S   L     + +
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLLSSCS 168

Query: 292 SIQKLLLSWNDELGGK-IPTSFGKLCK-LTSFSMASTKLSQDISE--ILGIFSGCVAYEL 347
            + +L LSW  +   K +  +   + + +T  +++     +++ +  +  +   C    L
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG--YRKNLQKSDLSTLVRRCP--NL 224

Query: 348 ESLYLRGCQIFGHLTNQ----LGQFKRLNFLGLSNNQM--DGSIPLSLGQMANLESLDLS 401
             L L        L N       Q   L  L LS        ++ L LG++  L++L + 
Sbjct: 225 VHLDLSDSV---MLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LELGEIPTLKTLQVF 280

Query: 402 NNKLNGTVSEI 412
               +GT+  +
Sbjct: 281 GIVPDGTLQLL 291

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.3 bits (180), Expect = 7e-14
 Identities = 42/194 (21%), Positives = 71/194 (36%), Gaps = 16/194 (8%)

Query: 94  HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY 153
           +   LDLS N+   ++       L NL  L LS      +       + NL+YLDLS  +
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 154 FE-LHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP-- 210
              L        S L  LE L +   ++     +      +  L++L LS  ++  FP  
Sbjct: 100 LHTLDEFL---FSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQISRFPVE 154

Query: 211 -LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKH--LDLYSNQFN-----SAVLGWL 262
            +        L  LDLS N+ +    + L  L +     L L++N          +    
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHW 214

Query: 263 SKLNDLEVLSLEDN 276
                  V+  +++
Sbjct: 215 QYRQLSSVMDFQED 228

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.6 bits (160), Expect = 2e-11
 Identities = 31/131 (23%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 193 LHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR-LGNLTSLKHLDLYS 251
           L +L  L LS   L+     +     +L  LDLS N     +      +L +L+ L LY+
Sbjct: 63  LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYN 121

Query: 252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISS---LGLDNLTSIQKLLLSWNDELGGKI 308
           N            +  L+ L L  N++            + L  +  L LS N +L    
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179

Query: 309 PTSFGKLCKLT 319
            T   KL    
Sbjct: 180 LTDLQKLPAWV 190

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 41/201 (20%), Positives = 62/201 (30%), Gaps = 47/201 (23%)

Query: 217 FSSLTTLDLSGNQFQGQIPSR--LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
            S    LDLS N    ++ +      LT+L  L L  N  N         + +L  L L 
Sbjct: 38  PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
            N L   +      +L +++ LLL  N                +             +  
Sbjct: 97  SNHLH-TLDEFLFSDLQALEVLLLYNN---------------HIVV-----------VDR 129

Query: 335 ILGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
               F      +L+ LYL   QI                   +L  L LS+N++      
Sbjct: 130 --NAFEDMA--QLQKLYLSQNQISRFPVELIKDGNK----LPKLMLLDLSSNKLKKLPLT 181

Query: 388 SLGQMANL--ESLDLSNNKLN 406
            L ++       L L NN L 
Sbjct: 182 DLQKLPAWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           + +L +LDLS N    +      + L  L  L L       +  +   +++ LQ L LS 
Sbjct: 87  VPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 152 VYFE-LHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSF------C 204
                   E I   + L  L  L +S   L K   +   +  L +  +  L        C
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--DLQKLPAWVKNGLYLHNNPLEC 203

Query: 205 ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
           +   + L S   +  L+++             +L N+ SL   +    +
Sbjct: 204 DCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYK 252

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 10/122 (8%)

Query: 566 EGIPDCWMNWPRLRTLNLGNNNFTGSLP--MSIGTLTSLRSLNLRNNRLSGVIPTSFKNF 623
           + +P           L+L +NN +  L    +   LT+L SL L +N L+ +   +F   
Sbjct: 35  QSLP------SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV 87

Query: 624 SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN 683
             L  LD+  N L  ++  ++      L +L+L +N            +A LQ L ++ N
Sbjct: 88  PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146

Query: 684 SL 685
            +
Sbjct: 147 QI 148

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 5/142 (3%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCW-MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
           ++       L LS N+ S    +        L +L L +N+       +   + +LR L+
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNK---FHG 663
           L +N L  +    F +   LE L +  N +V  +     E  ++L  L L  N+   F  
Sbjct: 95  LSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153

Query: 664 DFPIQLCRLASLQILDVAYNSL 685
           +      +L  L +LD++ N L
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 13/130 (10%)

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNN 610
            N+ +L LS+NH        + +   L  L L NN+    +  +    +  L+ L L  N
Sbjct: 88  PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN 146

Query: 611 RLSGVIPTSFKNFSI---LEALDVGENELVGSIPTWIGERFSRLMILILR--SNKFHGDF 665
           ++S       K+ +    L  LD+  N+L   +P    ++    +   L   +N    D 
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLHNNPLECD- 204

Query: 666 PIQLCRLASL 675
               C+L  L
Sbjct: 205 ----CKLYQL 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 740 LNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS 797
           L  + S+ +S N+ +  I  E    +  L+ L+LS N     + + +   ++++E L   
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND 847
            N +      +  +++ L  L LS N          Q+  F        +
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQN----------QISRFPVELIKDGN 160

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 8e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 744 RSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQL 801
           R +D+S N+    +   + ++LQ L+ L L +N     +  N    M  ++ L  S NQ+
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 802 SGQIP----QSMSNLSFLNYLNLSNNNL 825
           S + P    +  + L  L  L+LS+N L
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.7 bits (180), Expect = 2e-13
 Identities = 98/662 (14%), Positives = 205/662 (30%), Gaps = 150/662 (22%)

Query: 246 HLDLYSNQ----FNSAVLGWLSKL-NDLEVLSLEDNRLQGDISSLGLDNLTSI-----QK 295
           H+D  + +    +   +  +     ++ +   ++D   +  +S   +D++          
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDAVSGT 64

Query: 296 LLLSWNDELGGK-IPTSF--GKLCKLTSFSMASTKL-SQDISEILGIFSGCVAYELESLY 351
           L L W      + +   F    L     F M+  K   +  S +  ++      + + LY
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI----EQRDRLY 120

Query: 352 LRGCQIFG-----------HLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ--MANLESL 398
               Q+F             L   L + +    + +  + + GS     G+  +A    L
Sbjct: 121 -NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGS-----GKTWVALDVCL 172

Query: 399 DLS-NNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVP-PFQLTVLELRSCHLGP 456
                 K++  +  ++  N     + L     L+++I+PNW       + ++LR   +  
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 457 RFPLWLQLQKKLNDL----DISSTRISD------KI-----PRAFWNSIFQYYYLNVSGN 501
                L+ +   N L    ++ + +  +      KI      +   + +      ++S +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 502 QIYGGVPKFDSPSMPLIITPSLLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 560
                +   +  S+ L       L     DL    L+ +   L    E+           
Sbjct: 293 HHSMTLTPDEVKSL-L----LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG------- 340

Query: 561 TNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSF 620
                      W NW      ++  +  T  +  S   L  L     R           F
Sbjct: 341 --------LATWDNW-----KHVNCDKLTTIIESS---LNVLEPAEYRKM---------F 375

Query: 621 KNFSILEALDVGENELVGSIPT------WIGERFSRLMILILRSNKFH------GDFPIQ 668
              S+              IPT      W     S +M+++   NK H            
Sbjct: 376 DRLSVFPP-SA-------HIPTILLSLIWFDVIKSDVMVVV---NKLHKYSLVEKQPKES 424

Query: 669 LCRLASLQILDVAYNSLLGTI-PRCINNFSAMATADSSDQSSDIL--YAFS------GDN 719
              + S+ +           +    +++++   T DS D     L  Y +S       + 
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 720 KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 779
           +  E  +L    FL ++  +   +R    + N         + N   LQ L         
Sbjct: 485 EHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGS-----ILNT--LQQLKFYKPYICD 536

Query: 780 RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL---SFLNYLNLSNNNLNGEI--PSSTQ 834
             P    ++ +I  LDF        +P+   NL    + + L ++    +  I   +  Q
Sbjct: 537 NDPKYERLVNAI--LDF--------LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586

Query: 835 LQ 836
           +Q
Sbjct: 587 VQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 5e-07
 Identities = 83/533 (15%), Positives = 155/533 (29%), Gaps = 161/533 (30%)

Query: 63  NLQN---PFSPDDNEAYQRSMLVGKINPSLLELKH----LVHLDL-SGNDFQGIQIPK-Y 113
            L N    F+  +     R     K+  +LLEL+     L+   L SG         K +
Sbjct: 118 RLYNDNQVFAKYN---VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG---------KTW 165

Query: 114 LASLVNLR-------------YLNLSQARFTGMIPHQLGNL-----SNLQYLDLSGVYFE 155
           +A  V                +LNL        +   L  L      N           +
Sbjct: 166 VALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 156 LHAETI-SWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSF---CELHHFPL 211
           L   +I + L  L L    Y          + LLV+ ++ + K    +F   C++    L
Sbjct: 225 LRIHSIQAELRRL-LKSKPY---------ENCLLVLLNVQNAKAWN-AFNLSCKI----L 269

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLS-KLNDL-- 268
           L++     +T    +       +      LT  +   L           +L  +  DL  
Sbjct: 270 LTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK--------YLDCRPQDLPR 320

Query: 269 EVL------------SLED--NRLQG----------DISSLGLDNLTS--IQKLLLSWND 302
           EVL            S+ D                  I    L+ L     +K+     D
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF----D 376

Query: 303 ELG-----GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIF--SGCVA-------YELE 348
            L        IPT    L  +         +  D+  ++        V          + 
Sbjct: 377 RLSVFPPSAHIPTIL--LSLIW-----FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 349 SLYLR-GCQIFG----H--LTNQLGQFKRLNFLGLSNNQMDGSIPLSLG-QMANLESLDL 400
           S+YL    ++      H  + +     K  +   L    +D      +G  + N+E  + 
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 401 SN--NKLNGTVSEIHFVNLTKLVSFLANANSLIFKIN---PNWVPPFQL--TVLELR--S 451
                 +        F++      FL        KI      W     +  T+ +L+   
Sbjct: 490 MTLFRMV--------FLDF----RFLEQ------KIRHDSTAWNASGSILNTLQQLKFYK 531

Query: 452 CHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504
            ++    P   + ++ +N +     +I + +  + +  + +   L      I+
Sbjct: 532 PYICDNDP---KYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIF 580

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            +    LDL  N+           LT L+ L L  N+  +   G   +L +LE L + DN
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTS-FGKLCKLTSFSMASTKLSQDISEI 335
           +LQ  +     D L ++ +L L  N +L   +P   F  L KLT  S+   +L Q + + 
Sbjct: 96  KLQ-ALPIGVFDQLVNLAELRLDRN-QL-KSLPPRVFDSLTKLTYLSLGYNEL-QSLPK- 150

Query: 336 LGIFSGCVAYELESLYLRGCQI-------FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
            G+F    +  L+ L L   Q+       F  LT        L  L L NNQ+      +
Sbjct: 151 -GVFDKLTS--LKELRLYNNQLKRVPEGAFDKLTE-------LKTLKLDNNQLKRVPEGA 200

Query: 389 LGQMANLESLDLSNN 403
              +  L+ L L  N
Sbjct: 201 FDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
            + + L+L   + + +       L+ L+ L L+    +L          L  LE L+++ 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLN--DNKLQTLPAGIFKELKNLETLWVTD 94

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
             L        V + L +L EL+L   +L   P     + + LT L L  N+ Q  +P  
Sbjct: 95  NKLQALPIG--VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151

Query: 238 L-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
           +   LTSLK L LY+NQ      G   KL +L+ L L++N+L+  +     D+L  ++ L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210

Query: 297 LLSWN 301
            L  N
Sbjct: 211 QLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 48/186 (25%), Positives = 74/186 (39%), Gaps = 11/186 (5%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQ 229
            + L +    LS         + L  L+ L L+  +L   P        +L TL ++ N+
Sbjct: 39  TKKLDLQSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 230 FQGQIPSRL-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLD 288
            Q  +P  +   L +L  L L  NQ  S        L  L  LSL  N LQ  +     D
Sbjct: 97  LQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFD 154

Query: 289 NLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELE 348
            LTS+++L L  N +L      +F KL +L +  + + +L        G F       L+
Sbjct: 155 KLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLK---RVPEGAFDSLEK--LK 208

Query: 349 SLYLRG 354
            L L+ 
Sbjct: 209 MLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 44/177 (24%), Positives = 63/177 (35%), Gaps = 25/177 (14%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDL-------- 149
           LDL  N    +   K    L  LR L L+  +   +       L NL+ L +        
Sbjct: 42  LDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100

Query: 150 -SGVYFELHAETISWLS-------------GLSLLEHLYISFVNLSKASDSLLVINSLHS 195
             GV+ +L       L               L+ L +L + +  L        V + L S
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--VFDKLTS 158

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
           LKEL+L   +L   P  +    + L TL L  NQ +        +L  LK L L  N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 40/175 (22%), Positives = 69/175 (39%), Gaps = 28/175 (16%)

Query: 533 NNAL----------SGSIFHLICQGENFSK-------NIEFLKLSTNHFSEGIPDCWMNW 575
           N AL          + +   + C  +  +        + + L L +N  S      +   
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60

Query: 576 PRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
            +LR L L +N    +LP  I   L +L +L + +N+L  +    F     L  L +  N
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 635 ELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQILDVAYNSL 685
           +L  S+P  + +  ++L  L L  N+      G F     +L SL+ L +  N L
Sbjct: 120 QLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQL 169

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.6 bits (106), Expect = 8e-05
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 3/108 (2%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNR 611
           N+  L+L  N      P  + +  +L  L+LG N    SLP  +   LTSL+ L L NN+
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQ 168

Query: 612 LSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSN 659
           L  V   +F   + L+ L +  N+L   +P    +   +L +L L+ N
Sbjct: 169 LKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 60/252 (23%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
             +++  +   T ++P +I      + L+L++N+LS +   +F   + L  L + +N+L 
Sbjct: 18  KNSVDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 638 GSIPTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQILDVAYNSLLGTIPRCI 693
            ++P  I +    L  L +  NK      G F     +L +L  L +  N  L ++P   
Sbjct: 75  -TLPAGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQ-LKSLPP-- 126

Query: 694 NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNF 753
                                F                        L  +  + +  N  
Sbjct: 127 -------------------RVFDS----------------------LTKLTYLSLGYNEL 145

Query: 754 SGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSN 811
              +P  V   L  L+ L L +N    R+P+     +  +++L    NQL      +  +
Sbjct: 146 Q-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203

Query: 812 LSFLNYLNLSNN 823
           L  L  L L  N
Sbjct: 204 LEKLKMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.0 bits (164), Expect = 8e-12
 Identities = 57/353 (16%), Positives = 96/353 (27%), Gaps = 86/353 (24%)

Query: 195 SLKELKLSFCEL------HHFPLLSSANFSSLTTLDLSGNQFQGQ----IPSRLGNLTSL 244
           S++   L    +        F +L      S+  + LSGN    +    +   + +   L
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVL--LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62

Query: 245 KHLDLYSNQFN----------SAVLGWLSKLNDLEVLSLEDNRLQGD-ISSLG--LDNLT 291
           +  +                   +L  L K   L  + L DN         L   L   T
Sbjct: 63  EIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT 122

Query: 292 SIQKLLLSWND--ELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELES 349
            ++ L L  N      G                     +++ + E+        A  L S
Sbjct: 123 PLEHLYLHNNGLGPQAGAK-------------------IARALQELAVNKKAKNAPPLRS 163

Query: 350 LYLRGCQIFG----HLTNQLGQFKRLNFLGLSNNQM--DGSIPL---SLGQMANLESLDL 400
           +     ++               + L+ + +  N +  +G   L    L     L+ LDL
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR--- 457
            +N                  S LA A     K  PN      L  L L  C L  R   
Sbjct: 224 QDNTFT-----------HLGSSALAIA----LKSWPN------LRELGLNDCLLSARGAA 262

Query: 458 ---FPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVSGNQI 503
                        L  L +    I       +       +    +L ++GN+ 
Sbjct: 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 56/295 (18%), Positives = 95/295 (32%), Gaps = 56/295 (18%)

Query: 53  GNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDF--QGIQ- 109
             F+     L L +  + +D ++         +   LLE   +  + LSGN    +  + 
Sbjct: 2   ARFSIEGKSLKL-DAITTEDEKS---------VFAVLLEDDSVKEIVLSGNTIGTEAARW 51

Query: 110 IPKYLASLVNLRYLNLSQARFTGMIPHQ-----------LGNLSNLQYLDLSGVYFELH- 157
           + + +AS  +L     S   FTG +  +           L     L  + LS   F    
Sbjct: 52  LSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 158 AETI-SWLSGLSLLEHLYISFVNLS-----------KASDSLLVINSLHSLKELKLSFCE 205
            E +  +LS  + LEHLY+    L            +         +   L+ +      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 206 LHHF--PLLSSA--NFSSLTTLDLSGNQF-----QGQIPSRLGNLTSLKHLDLYSNQFNS 256
           L +      +    +   L T+ +  N       +  +   L     LK LDL  N F  
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 257 A---VLGW-LSKLNDLEVLSLEDNRLQGD-----ISSLGLDNLTSIQKLLLSWND 302
                L   L    +L  L L D  L        + +        +Q L L +N+
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 55/335 (16%), Positives = 102/335 (30%), Gaps = 70/335 (20%)

Query: 347 LESLYLRGCQI----FGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLS--LGQMANLESL 398
           +E   L+   I       +   L +   +  + LS N +  + +  LS  +    +LE  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR- 457
           + S+        EI      + +  L  A        P       L  + L     GP  
Sbjct: 66  EFSDIFTGRVKDEI-----PEALRLLLQA----LLKCPK------LHTVRLSDNAFGPTA 110

Query: 458 ---FPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYY--------YLNVSGNQ 502
                 +L     L  L + +  +  +    I RA                  +    N+
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 503 IYGGVPKFDSPSMPLIITPSLLLGSI-----FDLSNNALSGS-IFHLICQGENFSKNIEF 556
           +       ++ SM      +    S        +  N +    I HL+ +G  + + ++ 
Sbjct: 171 L-------ENGSMKEW---AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKV 220

Query: 557 LKLSTNHFS----EGIPDCWMNWPRLRTLNLGNNNFTG------SLPMSIGTLTSLRSLN 606
           L L  N F+      +     +WP LR L L +   +           S      L++L 
Sbjct: 221 LDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR 280

Query: 607 LRNNRLSG----VIPTSFK-NFSILEALDVGENEL 636
           L+ N +       + T        L  L++  N  
Sbjct: 281 LQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.5 bits (121), Expect = 1e-06
 Identities = 42/270 (15%), Positives = 82/270 (30%), Gaps = 34/270 (12%)

Query: 38  IGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVH 97
            G           L  +     L L+  N   P       R++    +N        L  
Sbjct: 106 FGPTA-QEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163

Query: 98  LDLSGNDFQ---GIQIPKYLASLVNLRYLNLSQARFT-----GMIPHQLGNLSNLQYLDL 149
           +    N  +     +  K   S   L  + + Q          ++   L     L+ LDL
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDL 223

Query: 150 SGVYFELH-AETISW-LSGLSLLEHLYISFVNLSKA-----SDSLLVINSLHSLKELKLS 202
               F    +  ++  L     L  L ++   LS        D+   + ++  L+ L+L 
Sbjct: 224 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI-GLQTLRLQ 282

Query: 203 FCELHH--FPLLSSA---NFSSLTTLDLSGNQF--QGQIPSRL---------GNLTSLKH 246
           + E+       L +        L  L+L+GN+F  +  +   +         G L  L  
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDELDD 342

Query: 247 LDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
           ++  +++            +     S E+ 
Sbjct: 343 MEELTDEEEEDEEEEAESQSPEPETSEEEK 372

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 56/405 (13%), Positives = 104/405 (25%), Gaps = 118/405 (29%)

Query: 238 LGNLTSLKHLDLYSNQFNS----AVLGWLSKLNDLEVLSLEDNRLQGDIS----SLGLDN 289
           +    S++   L  +   +    +V   L + + ++ + L  N + G  +    S  + +
Sbjct: 1   MARF-SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTI-GTEAARWLSENIAS 58

Query: 290 LTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELES 349
              ++    S                                               ++ 
Sbjct: 59  KKDLEIAEFSDIF-----------------------------------------TGRVKD 77

Query: 350 LYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLS--LGQMANLESLDLSNNKL 405
                 +    L   L +  +L+ + LS+N        PL   L +   LE L L NN L
Sbjct: 78  EIPEALR---LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

Query: 406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR----FPLW 461
            G  +           + +A A   +         P  L  +      L       +   
Sbjct: 135 -GPQA----------GAKIARALQELAVNKKAKNAP-PLRSIICGRNRLENGSMKEWAKT 182

Query: 462 LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITP 521
            Q  + L+ + +    I  +                        G+         L    
Sbjct: 183 FQSHRLLHTVKMVQNGIRPE------------------------GIEHLLLEG--LAYCQ 216

Query: 522 SLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN--------HFSEGIPDCWM 573
            L    + DL +N  +      +        N+  L L+             +       
Sbjct: 217 EL---KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL-- 271

Query: 574 NWPRLRTLNLGNNNFTG----SLPMSIGT-LTSLRSLNLRNNRLS 613
               L+TL L  N        +L   I   +  L  L L  NR S
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 44/330 (13%), Positives = 101/330 (30%), Gaps = 58/330 (17%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS----EGIPDCWMNWPRLRTLNLGN 585
            L  +A++      +        +++ + LS N         + +   +   L      +
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-S 68

Query: 586 NNFTG-----------SLPMSIGTLTSLRSLNLRNNRLS--GVIP--TSFKNFSILEALD 630
           + FTG            L  ++     L ++ L +N        P        + LE L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP 690
           +  N         +G +    +   L+    +     +      L+ +    N       
Sbjct: 129 LHNNG--------LGPQAGAKIARALQELAVNK----KAKNAPPLRSIICGRNR------ 170

Query: 691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISM 750
             + N S    A +      +       N I  +    +    + Y   L   + +D+  
Sbjct: 171 --LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL---KVLDLQD 225

Query: 751 NNFSGE----IPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVM--RSIESLDFSANQ 800
           N F+      + + + +   L+ L L+  L + R    + D    +    +++L    N+
Sbjct: 226 NTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

Query: 801 LSGQ----IPQSM-SNLSFLNYLNLSNNNL 825
           +       +   +   +  L +L L+ N  
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 36/276 (13%), Positives = 78/276 (28%), Gaps = 59/276 (21%)

Query: 444 LTVLELRSCHLGPR----FPLWLQLQKKLNDLDISSTRISDK----IPRAFW-NSIFQYY 494
           +    L+   +           L     + ++ +S   I  +    +          +  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI- 64

Query: 495 YLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS---IFDLSNNALSGSIFHLICQGENFS 551
               S      G  K + P    ++  +LL         LS+NA   +    +    +  
Sbjct: 65  -AEFSDIFT--GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 121

Query: 552 KNIEFLKLSTN--------HFSEGIPDCWMNW-----PRLRTLNLGNNNFTG----SLPM 594
             +E L L  N          +  + +  +N      P LR++  G N            
Sbjct: 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181

Query: 595 SIGTLTSLRSLNLRNNRL-----SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS 649
           +  +   L ++ +  N +       ++         L+ LD+ +N              S
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT--------FTHLGS 233

Query: 650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
             + + L+S               +L+ L +    L
Sbjct: 234 SALAIALKSWP-------------NLRELGLNDCLL 256

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLY 250
            L  L+++  S  ++      +    S +  + L+ N+ +  +  ++   L SLK L L 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113

Query: 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           SN+           L+ + +LSL DN++   ++    D L S+  L L  N
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 29/168 (17%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELH 157
           L L+ N+F  ++       L  LR +N S  + T +        S +  + L+       
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS------ 90

Query: 158 AETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF 217
                     + LE++               +   L SLK L L    +      S    
Sbjct: 91  ----------NRLENVQHK------------MFKGLESLKTLMLRSNRITCVGNDSFIGL 128

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLSK 264
           SS+  L L  NQ     P     L SL  L+L +N FN +  L WL +
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGE 176

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 48/171 (28%)

Query: 242 TSLKHLDLYSNQFNS-AVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSW 300
                L L +N+F      G   KL  L  ++  +N++  DI     +  + + ++LL+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90

Query: 301 NDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI--- 357
           N               +L +                 +F G  +  L++L LR  +I   
Sbjct: 91  N---------------RLENVQ-------------HKMFKGLES--LKTLMLRSNRITCV 120

Query: 358 ----FGHLTNQLGQFKRLNFLGLSNNQMDGSIPL-SLGQMANLESLDLSNN 403
               F  L++       +  L L +NQ+  ++   +   + +L +L+L  N
Sbjct: 121 GNDSFIGLSS-------VRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 17/130 (13%)

Query: 567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPTSFKNFSI 625
            IP           L L NN FT      I   L  LR +N  NN+++ +   +F+  S 
Sbjct: 29  HIP------QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQILDVA 681
           +  + +  N L  ++   + +    L  L+LRSN+     +  F      L+S+++L + 
Sbjct: 83  VNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFI----GLSSVRLLSLY 137

Query: 682 YNSLLGTIPR 691
            N  + T+  
Sbjct: 138 DNQ-ITTVAP 146

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.8 bits (155), Expect = 1e-10
 Identities = 57/358 (15%), Positives = 119/358 (33%), Gaps = 33/358 (9%)

Query: 92  LKHLVHLDLSGNDFQGI---QIPKYLASLVNLRYLNLSQARFT---GMIPHQLGNLSNLQ 145
            ++L  LDL  +D   +    +  +  +  +L  LN+S          +   +    NL+
Sbjct: 155 CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214

Query: 146 YLDLSGVYFELHAETISWLSGLSLLEHLYI-SFVNLSKASDSLLVINSLHSLKELK-LSF 203
            L L+        +  + L     LE L    +    +      +  +L   KEL+ LS 
Sbjct: 215 SLKLNR--AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 204 CELHHFPLLSS--ANFSSLTTLDLSGNQFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAVLG 260
                   L +  +  S LTTL+LS    Q   +   L     L+ L +     ++ +  
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332

Query: 261 WLSKLNDLEVLSLEDNRLQGDISSLGL--DNLTSIQ------KLLLSWNDELGGKIPTSF 312
             S   DL  L +  +       ++ L    L S+       + +L +  ++      + 
Sbjct: 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI 392

Query: 313 GKLC-KLTSFSMASTKLSQDISEILGIFSGCVAY------ELESLYLRGC---QIFGHLT 362
            +    +T F +   +        L               +L  L L G    ++F ++ 
Sbjct: 393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIG 452

Query: 363 NQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
               + + L+ +  + +  D  +   L    +L  L++ +          +   L  +
Sbjct: 453 TYAKKMEMLS-VAFAGDS-DLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 79/535 (14%), Positives = 160/535 (29%), Gaps = 83/535 (15%)

Query: 112 KYLASLVNLRYLNLSQARFTGMIPHQLG-NLSNLQYLDLSGVYFELHAETISWLSGLSLL 170
           K    +       +       + P  +      ++ ++L G             +  +L+
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK---------PHFADFNLV 85

Query: 171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS-SANFSSLTTLDLSG-N 228
              +  +V     +    + +S   L+E++L    +    L   + +F +   L LS   
Sbjct: 86  PDGWGGYVYPWIEA----MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141

Query: 229 QFQGQ-IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGL 287
            F    + +      +LK LDL  +  +     WLS                        
Sbjct: 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF---------------------P 180

Query: 288 DNLTSIQKLLLSW-NDELGGKIPTSFGKLCK-LTSFSMASTKLSQDISEILGIFSGCVAY 345
           D  TS+  L +S    E+           C  L S  +     +  + ++  +       
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR---AVPLEKLATLLQRAPQ- 236

Query: 346 ELESLYLRGC------QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLD 399
            LE L   G        ++  L+  L   K L  L    + +   +P      + L +L+
Sbjct: 237 -LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295

Query: 400 LSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFP 459
           LS   +             KL         ++  I    +     T  +LR   + P  P
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRL-----WVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 460 LWLQLQKKLND---------------LDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIY 504
             ++    L +               +     ++++        +        +   +  
Sbjct: 351 FVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPK 410

Query: 505 GGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSI----FHLICQGENFSKNIEFLKLS 560
                   P          ++    DL   +LSG +    F  I      +K +E L ++
Sbjct: 411 APDYLTLEPLDIGFGA---IVEHCKDLRRLSLSGLLTDKVFEYIGTY---AKKMEMLSVA 464

Query: 561 TNHFS-EGIPDCWMNWPRLRTLNLGNNNFTG-SLPMSIGTLTSLRSLNLRNNRLS 613
               S  G+         LR L + +  F   +L  +   L ++RSL + +  +S
Sbjct: 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 6e-06
 Identities = 52/314 (16%), Positives = 103/314 (32%), Gaps = 47/314 (14%)

Query: 89  LLELKHLVHLDLSG-----NDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSN 143
           L     L  L   G            +   L+    LR L+         +P      S 
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 144 LQYLDLSGVYFELHAETISWL-SGLSLLEHLYISFVNLSKASDSLL--VINSLHSLKELK 200
           L  L+LS     + +  +  L      L+ L++         D+ L  + ++   L+EL+
Sbjct: 291 LTTLNLSYA--TVQSYDLVKLLCQCPKLQRLWVL----DYIEDAGLEVLASTCKDLRELR 344

Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
           +   E        +     L ++                    L+ +  +  Q  +A L 
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSV--------------SMGCPKLESVLYFCRQMTNAALI 390

Query: 261 WLSK-LNDLEVLSL------EDNRLQGDISSLGLDNL----TSIQKLLLSWNDELGGKIP 309
            +++   ++    L        + L  +   +G   +      +++L LS    L  K+ 
Sbjct: 391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVF 448

Query: 310 TSFGKLCK-LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFG-HLTNQLGQ 367
              G   K +   S+A    S D+  +  + SGC +  L  L +R C      L     +
Sbjct: 449 EYIGTYAKKMEMLSVAFAGDS-DLG-MHHVLSGCDS--LRKLEIRDCPFGDKALLANASK 504

Query: 368 FKRLNFLGLSNNQM 381
            + +  L +S+  +
Sbjct: 505 LETMRSLWMSSCSV 518

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.3 bits (151), Expect = 4e-10
 Identities = 84/614 (13%), Positives = 161/614 (26%), Gaps = 94/614 (15%)

Query: 88  SLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYL 147
              ++       ++          +      NLR L L       M      N       
Sbjct: 43  RWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTP 102

Query: 148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH 207
            ++ +            + L  L+ ++   + +S      L       L+ LKL  C   
Sbjct: 103 WVTEI-----------SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC--- 148

Query: 208 HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLND 267
                ++    S+ T                 +   +K L +  + F+     WL +L  
Sbjct: 149 --SGFTTDGLLSIVT-----------------HCRKIKTLLMEESSFSEKDGKWLHEL-- 187

Query: 268 LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND--ELGGKIPTSFGKLCK-LTSFSMA 324
                                + TS++ L     +  ++  K   +  + C+ L S  + 
Sbjct: 188 -------------------AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228

Query: 325 STKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGS 384
             ++ + +       +     E     L            L   ++L  LGLS       
Sbjct: 229 DFEILELVG-FFKAAANLE--EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNE 284

Query: 385 IPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF-LANA--NSLIFKINPNWVPP 441
           +P+     A +  LDL    L              L      N   +  +  +       
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK-- 342

Query: 442 FQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGN 501
            QL  L +                     ++     +S +   A      +  Y+ V  +
Sbjct: 343 -QLKRLRIERGA-------------DEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388

Query: 502 QI-YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 560
            I    +    +    L     +LL     +++  L   +  L+       K +      
Sbjct: 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG----CKKLRRFAFY 444

Query: 561 TNHFS---EGIPDCWMNWPRLRTLNLGNNNFT-GSLPMSIGTLTSLRSLNLRNNRLSGV- 615
                    G+       P +R + LG    +   L        +L+ L +R    S   
Sbjct: 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA 504

Query: 616 IPTSFKNFSILEALDVGENEL--VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLA 673
           I  +      L  L V        G     +   +  + ++  R                
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEH 564

Query: 674 SLQILDVAYNSLLG 687
              IL  AY SL G
Sbjct: 565 PAHIL--AYYSLAG 576

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 8e-10
 Identities = 34/232 (14%), Positives = 74/232 (31%), Gaps = 17/232 (7%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
           +     S KE  L       +   S+     L   +LS  +    + S L +   L+ L+
Sbjct: 321 IWTGSDSQKECVLLKDRPECWCRDSA-TDEQLFRCELSVEKST-VLQSELESCKELQELE 378

Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKI 308
             +      ++  +  L+ L                  L   ++++ +       L    
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKE------------TLQYFSTLKAVDPMRAAYLDDLR 426

Query: 309 PTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQF 368
                +   L         L     ++  +        +  L L   ++   L   L   
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAAL 485

Query: 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
           + L  L  S+N ++ ++   +  +  L+ L L NN+L  + +    V+  +L
Sbjct: 486 RCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 61.3 bits (148), Expect = 9e-10
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 36/176 (20%)

Query: 76  YQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP 135
             RS  + + +   +E   +  L L+  D   + +  +L  L+ + +L+LS  R    +P
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKD---LTVLCHLEQLLLVTHLDLSHNRLRA-LP 479

Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS 195
             L  L  L+ L  S        E +  ++ L  L+ L +               N L  
Sbjct: 480 PALAALRCLEVLQASDNAL----ENVDGVANLPRLQELLLCN-------------NRLQQ 522

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR---LGNLTSLKHLD 248
              ++     L   P         L  L+L GN    +   +      L S+  + 
Sbjct: 523 SAAIQ----PLVSCP--------RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 55.1 bits (132), Expect = 7e-08
 Identities = 52/298 (17%), Positives = 89/298 (29%), Gaps = 16/298 (5%)

Query: 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
            FS  +         L  ++    +     P      + +   +L    L+  +P     
Sbjct: 260 CFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFR 319

Query: 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILR--SNKFHGDFPIQLCRLASLQILDV 680
                +    E  L+   P       +    L     S +       +L     LQ L+ 
Sbjct: 320 VIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEP 379

Query: 681 AYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL-VMKGFLVEYNSI 739
                L TI   +     +     + Q    L A         D                
Sbjct: 380 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME 439

Query: 740 LNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 799
              VR + ++  + +  +   +  L  +  L+LSHN     +P  +  +R +E L  S N
Sbjct: 440 YADVRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN 496

Query: 800 QLSGQIPQSMSNLSFLNYLNLSNNNLN-----GEIPSSTQLQSFDASSFAGNDLCGAP 852
            L   +   ++NL  L  L L NN L        + S  +L   +     GN LC   
Sbjct: 497 ALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN---LQGNSLCQEE 549

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.8 bits (126), Expect = 4e-07
 Identities = 38/274 (13%), Positives = 85/274 (31%), Gaps = 32/274 (11%)

Query: 553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRL 612
           ++    L+           W      +   L  +           T   L    L   + 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKS 361

Query: 613 SGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL 672
           + V+ +  ++   L+ L+                     +IL++R+          L   
Sbjct: 362 T-VLQSELESCKELQELEPENK------------WCLLTIILLMRALDPLLYEKETLQYF 408

Query: 673 ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGF 732
           ++L+ +D     +       + +   +  +    + +D+         +           
Sbjct: 409 STLKAVD----PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV--------- 455

Query: 733 LVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 792
            + +   L LV  +D+S N     +P  +  L+ L+ L  S N     +   +  +  ++
Sbjct: 456 -LCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQ 511

Query: 793 SLDFSANQLSG-QIPQSMSNLSFLNYLNLSNNNL 825
            L    N+L      Q + +   L  LNL  N+L
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 44/342 (12%), Positives = 97/342 (28%), Gaps = 19/342 (5%)

Query: 76  YQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP 135
           Y R +L       +L   H+   +   +      +         L  ++ +        P
Sbjct: 231 YHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTP 290

Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS 195
                 S++   DL            ++    +  +      +   +         +   
Sbjct: 291 DGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQ 350

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
           L   +LS  +          +   L  L+         I   +  L  L +       F+
Sbjct: 351 LFRCELSVEKSTVLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 256 SAVLGWLSKLNDLEVLSLEDNR-LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
           +     L  ++ +    L+D R      +S+       ++ L L+  D     +     +
Sbjct: 410 T-----LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLC-HLEQ 461

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
           L  +T   ++  +    +  +    +      LE L      +  ++   +    RL  L
Sbjct: 462 LLLVTHLDLSHNR----LRALPPALAALRC--LEVLQASDNALE-NVDG-VANLPRLQEL 513

Query: 375 GLSNNQMDG-SIPLSLGQMANLESLDLSNNKLNGTVSEIHFV 415
            L NN++   +    L     L  L+L  N L         +
Sbjct: 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 548 ENFSKNIEFLKLSTNHFS--EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL 605
           +    ++  L L+    +    +         +  L+L +N    +LP ++  L  L  L
Sbjct: 437 KMEYADVRVLHLAHKDLTVLCHLEQL----LLVTHLDLSHNRLR-ALPPALAALRCLEVL 491

Query: 606 NLRNNRLSGVIPTSFKNFSILEALDVGENEL 636
              +N L  V      N   L+ L +  N L
Sbjct: 492 QASDNALENV--DGVANLPRLQELLLCNNRL 520

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 40/239 (16%), Positives = 74/239 (30%), Gaps = 31/239 (12%)

Query: 379 NQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNW 438
                           L   +LS  K     SE+      + +        L   +    
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR- 393

Query: 439 VPPFQLTVLELRSCHLGPRFPLW-LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLN 497
                L  L      L     L  +   +     D+ S  + +        +  +   L+
Sbjct: 394 ----ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV--LH 447

Query: 498 VSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL 557
           ++   +           +  +    LLL +  DLS+N L  ++   +       + +E L
Sbjct: 448 LAHKDLT---------VLCHL--EQLLLVTHLDLSHNRLR-ALPPALAA----LRCLEVL 491

Query: 558 KLSTNHFS--EGIPDCWMNWPRLRTLNLGNNNFTG-SLPMSIGTLTSLRSLNLRNNRLS 613
           + S N     +G+ +     PRL+ L L NN     +    + +   L  LNL+ N L 
Sbjct: 492 QASDNALENVDGVANL----PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 39/216 (18%)

Query: 181 SKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLG- 239
            K+    +  N L+S+ ++  +  ++     +      ++  L L GN+        +  
Sbjct: 28  KKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY--LPNVRYLALGGNKLH-----DISA 80

Query: 240 --NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL--GL-DNLTSIQ 294
              LT+L +L L  NQ  S   G   KL +L+ L L +N+LQ    SL  G+ D LT++ 
Sbjct: 81  LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ----SLPDGVFDKLTNLT 136

Query: 295 KLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
            L L+ N +L       F KL  LT   ++  +L Q + E  G+F      +L+ L L  
Sbjct: 137 YLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL-QSLPE--GVFDKLT--QLKDLRLY- 189

Query: 355 CQIFGHLTNQL-----GQFKRLNFLG---LSNNQMD 382
                   NQL     G F RL  L    L +N  D
Sbjct: 190 -------QNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 54.6 bits (132), Expect = 4e-08
 Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 55/198 (27%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
           F+     +L          ++   L S+  +   ++   S  +  +  L ++  L+L  N
Sbjct: 18  FAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN 73

Query: 277 RLQGDISSLGL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
           +L      +     LT++  L+L+ N               +L S               
Sbjct: 74  KLH----DISALKELTNLTYLILTGN---------------QLQSLPN------------ 102

Query: 336 LGIFSGCVAYELESLYLRGCQ-------IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS 388
            G+F       L+ L L   Q       +F  LTN       L +L L++NQ+  S+P  
Sbjct: 103 -GVFDKLT--NLKELVLVENQLQSLPDGVFDKLTN-------LTYLNLAHNQLQ-SLPKG 151

Query: 389 L-GQMANLESLDLSNNKL 405
           +  ++ NL  LDLS N+L
Sbjct: 152 VFDKLTNLTELDLSYNQL 169

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 56/192 (29%)

Query: 222 TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
           T+ +S    Q   P            +L       AV    ++LN ++ +   ++ ++  
Sbjct: 2   TITVSTPIKQI-FPDDA--FAETIKANLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-- 54

Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSG 341
            S  G+  L +++ L L  N               KL                 +     
Sbjct: 55  -SVQGIQYLPNVRYLALGGN---------------KLHD---------------ISALKE 83

Query: 342 CVAYELESLYLRGCQ-------IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL-GQMA 393
                L  L L G Q       +F  LTN       L  L L  NQ+  S+P  +  ++ 
Sbjct: 84  LT--NLTYLILTGNQLQSLPNGVFDKLTN-------LKELVLVENQLQ-SLPDGVFDKLT 133

Query: 394 NLESLDLSNNKL 405
           NL  L+L++N+L
Sbjct: 134 NLTYLNLAHNQL 145

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 7e-05
 Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
             +  L ++ +L L GN    I     L  L NL YL L+  +   +       L+NL+ 
Sbjct: 57  QGIQYLPNVRYLALGGNKLHDISA---LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113

Query: 147 LDL---------SGVYFELHAETISWLSG--LSLLEHLYISFVNLSKASDSLLVINSLHS 195
           L L          GV+ +L   T   L+   L  L                  V + L +
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG---------------VFDKLTN 158

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLG---NLTSLKHLDLYSN 252
           L EL LS+ +L   P       + L  L L  NQ +  +P   G    LTSL+++ L+ N
Sbjct: 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

Query: 253 QFN 255
            ++
Sbjct: 216 PWD 218

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 17/115 (14%)

Query: 578 LRTLNLGNNNFTGSLPMSIG---TLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
           +R L LG N         I     LT+L  L L  N+L  +    F   + L+ L + EN
Sbjct: 65  VRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 635 ELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQILDVAYNSL 685
           +L  S+P  + ++ + L  L L  N+      G F     +L +L  LD++YN L
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQL 169

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 9e-10
 Identities = 41/198 (20%), Positives = 66/198 (33%), Gaps = 43/198 (21%)

Query: 61  ELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNL 120
           E         +  E +     + K++ +L  LK   HL LS N+ + I     L+ + NL
Sbjct: 16  ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS---SLSGMENL 72

Query: 121 RYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNL 180
           R L+L +      I +       L+ L +S         ++S +  L  L  LY+S  N 
Sbjct: 73  RILSLGRNLIKK-IENLDAVADTLEELWISYNQI----ASLSGIEKLVNLRVLYMSN-NK 126

Query: 181 SKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR--- 237
                    I +   + +L                    L  L L+GN            
Sbjct: 127 ---------ITNWGEIDKLA---------------ALDKLEDLLLAGNPLYNDYKENNAT 162

Query: 238 -------LGNLTSLKHLD 248
                  +  L +LK LD
Sbjct: 163 SEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 35/150 (23%), Positives = 67/150 (44%), Gaps = 11/150 (7%)

Query: 136 HQLGNLSNLQYLDLSGVYFELHAETI-SWLSGLSLLEHLYISFVNLSKASDSLLVINSLH 194
            +    +  + ++L G+   +  E + + LS L   +HL +S  N+ K S     ++ + 
Sbjct: 17  RKSVVATEAEKVELHGMIPPI--EKMDATLSTLKACKHLALSTNNIEKISS----LSGME 70

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           +L+ L L    +     L +    +L  L +S NQ    + S +  L +L+ L + +N+ 
Sbjct: 71  NLRILSLGRNLIKKIENLDA-VADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKI 127

Query: 255 NS-AVLGWLSKLNDLEVLSLEDNRLQGDIS 283
            +   +  L+ L+ LE L L  N L  D  
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 212 LSSANFSSLTTLDLSGNQFQG--QIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLE 269
             S   +    ++L         ++ + L  L + KHL L +N     +   LS + +L 
Sbjct: 17  RKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNI-EKISS-LSGMENLR 73

Query: 270 VLSLEDNRLQGDISSLGLDNLT-SIQKLLLSWNDELGGKIPT--SFGKLCKLTSFSMAST 326
           +LSL  N ++  I    LD +  ++++L +S+N     +I +     KL  L    M++ 
Sbjct: 74  ILSLGRNLIK-KIE--NLDAVADTLEELWISYN-----QIASLSGIEKLVNLRVLYMSNN 125

Query: 327 KLSQDISEILGIFSGCVAYELESLYLRGCQI 357
           K++ +  EI  + +     +LE L L G  +
Sbjct: 126 KIT-NWGEIDKLAA---LDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 41/189 (21%), Positives = 57/189 (30%), Gaps = 48/189 (25%)

Query: 262 LSKLNDLEVLSLEDNRLQGDISSL-----GLDNLTSIQKLLLSWNDELGGKIPTSFGKLC 316
             +   +     E   L G I  +      L  L + + L LS N+              
Sbjct: 14  FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-------------- 59

Query: 317 KLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGL 376
                          I +I  + SG     L  L L    I   + N       L  L +
Sbjct: 60  ---------------IEKISSL-SGME--NLRILSLGRNLI-KKIENLDAVADTLEELWI 100

Query: 377 SNNQ---MDGSIPLSLGQMANLESLDLSNNKLNGTVSEI-HFVNLTKLVSFLANANSLIF 432
           S NQ   + G     + ++ NL  L +SNNK+     EI     L KL   L   N L  
Sbjct: 101 SYNQIASLSG-----IEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYN 154

Query: 433 KINPNWVPP 441
               N    
Sbjct: 155 DYKENNATS 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 3/108 (2%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQ 253
           ++ E++L    +   P  + + +  L  +DLS NQ   ++       L SL  L LY N+
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK 91

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
                      L  L++L L  N++   +      +L ++  L L  N
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDN 138

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
            ++T + L  N  +   P        L+ +DL +NQ +         L  L  L L  N+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 278 LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMASTKLSQDISEIL 336
           +  ++     + L S+Q LLL+ N ++   +   +F  L  L   S+   KL    +   
Sbjct: 92  IT-ELPKSLFEGLFSLQLLLLNAN-KI-NCLRVDAFQDLHNLNLLSLYDNKLQ---TIAK 145

Query: 337 GIFSGCVAYELESLYLRG 354
           G FS   A  +++++L  
Sbjct: 146 GTFSPLRA--IQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 4/114 (3%)

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTL 223
            S    L  + +S   +S+ +        L SL  L L   ++   P        SL  L
Sbjct: 52  FSPYKKLRRIDLSNNQISELAPD--AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109

Query: 224 DLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            L+ N+    +      +L +L  L LY N+  +   G  S L  ++ + L  N
Sbjct: 110 LLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 29/148 (19%), Positives = 56/148 (37%), Gaps = 5/148 (3%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
             +  + L Q     + P        L+ +DLS    ++         GL  L  L +  
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS--NNQISELAPDAFQGLRSLNSLVLYG 89

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
             +++   S  +   L SL+ L L+  +++   + +  +  +L  L L  N+ Q      
Sbjct: 90  NKITELPKS--LFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 238 LGNLTSLKHLDLYSNQFN-SAVLGWLSK 264
              L +++ + L  N F     L WL+ 
Sbjct: 148 FSPLRAIQTMHLAQNPFICDCHLKWLAD 175

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 8/125 (6%)

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNN 610
           K +  + LS N  SE  PD +     L +L L  N  T  LP S+   L SL+ L L  N
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNAN 114

Query: 611 RLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC 670
           +++ +   +F++   L  L + +N+L  +I          +  + L  N F  D     C
Sbjct: 115 KINCLRVDAFQDLHNLNLLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQNPFICD-----C 168

Query: 671 RLASL 675
            L  L
Sbjct: 169 HLKWL 173

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 97  HLDLSGNDFQGI-QIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF- 154
              ++  D Q I  +P       + + L L +     +  H   NL N+  + +S     
Sbjct: 15  DFRVTCKDIQRIPSLP------PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 155 -ELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS 213
            +L + +      LS + H+ I         D    +  L  LK L +    L  FP L+
Sbjct: 69  QQLESHS---FYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTGLKMFPDLT 124

Query: 214 S-ANFSSLTTLDLSGNQFQGQIPSR-LGNLTS-LKHLDLYSNQFNSAVLGWLSKLNDLEV 270
              +      L+++ N +   IP      L +    L LY+N F S      +    L+ 
Sbjct: 125 KVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTK-LDA 183

Query: 271 LSLEDNRLQGDISSLGLDNLTS-IQKLLLSWN 301
           + L  N+    I       + S    L +S  
Sbjct: 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 33/216 (15%), Positives = 69/216 (31%), Gaps = 54/216 (25%)

Query: 92  LKHLVHLDLSGND-FQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQ-LGNLSNLQYLDL 149
           L ++  + +S +   Q ++      +L  + ++ +   R    I    L  L  L++L +
Sbjct: 54  LPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 150 SGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF 209
                          +GL +   L                + S      L++   +  + 
Sbjct: 113 FN-------------TGLKMFPDLTK--------------VYSTDIFFILEI--TDNPYM 143

Query: 210 PLLSSANFSSLT----TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKL 265
             +    F  L     TL L  N F   +     N T L  + L  N+       +L+ +
Sbjct: 144 TSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK-------YLTVI 195

Query: 266 ---------NDLEVLSLEDNRLQGDISSLGLDNLTS 292
                    +   +L +    +   + S GL++L  
Sbjct: 196 DKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKE 230

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 6e-08
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 41/256 (16%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
                +   +    +P       S ++L L    L  +   +F N   +  + V  +  +
Sbjct: 13  EEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL 68

Query: 638 GSIPTWIGERFSRLMILILRSNK---------FHGDFPIQLCRLASLQILDVAYNSLLGT 688
             + +      S++  + +R+ +                    L  L+ L +     L  
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE--------LPLLKFLGIFNTG-LKM 119

Query: 689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDI 748
            P          T   S     IL   + +  +   TS+ +  F      + N   ++ +
Sbjct: 120 FPD--------LTKVYSTDIFFILE-ITDNPYM---TSIPVNAF----QGLCNETLTLKL 163

Query: 749 SMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI--GVMRSIESLDFSANQLSGQIP 806
             N F+  +     N   L ++ L+ N +   I  +   GV      LD S   ++    
Sbjct: 164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222

Query: 807 QSMSNLSFLNYLNLSN 822
           + + +L  L   N   
Sbjct: 223 KGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 15/149 (10%)

Query: 552 KNIEFLKLSTNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRN 609
            NI  + +S +   + +    + N  ++  + + N      +       L  L+ L + N
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 610 NRLSGVIP--TSFKNFSILEALDVGENELVGSIPTWIGERF-SRLMILILRSNKFH---- 662
             L  + P  T   +  I   L++ +N  + SIP    +   +  + L L +N F     
Sbjct: 115 TGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173

Query: 663 GDFPIQLCRLASLQILDVAYNSLLGTIPR 691
             F         L  + +  N  L  I +
Sbjct: 174 YAF-----NGTKLDAVYLNKNKYLTVIDK 197

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 37/241 (15%), Positives = 77/241 (31%), Gaps = 39/241 (16%)

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSC 452
            + ++L L    L  T+    F NL  +     + +  + ++  +    F          
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESH---SFY--------- 77

Query: 453 HLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDS 512
           +L            K+  ++I +TR    I       +    +L +    +         
Sbjct: 78  NL-----------SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-------- 118

Query: 513 PSMP-LIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC 571
              P L    S  +  I ++++N    SI     QG         LKL  N F+  +   
Sbjct: 119 -MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG--LCNETLTLKLYNNGFTS-VQGY 174

Query: 572 WMNWPRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
             N  +L  + L  N +   +      G  +    L++    ++ +     ++   L A 
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

Query: 630 D 630
           +
Sbjct: 235 N 235

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)

Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
           N+  LT +DLS N+          N+T L  L L  N+           L  L +LSL  
Sbjct: 52  NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111

Query: 276 NRLQGDISSLGLDNLTSIQKLLLSWN 301
           N +   +     ++L+++  L +  N
Sbjct: 112 NDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
           T L L GNQF   +P  L N   L  +DL +N+ ++      S +  L  L L  NRL+ 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR- 91

Query: 281 DISSLGLDNLTSIQKLLLSWND 302
            I     D L S++ L L  ND
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGND 113

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSI 640
           L L  N FT  +P  +     L  ++L NNR+S +   SF N + L  L +  N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 641 PTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQ 676
           P    +    L +L L  N       G F      L++L 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFN----DLSALS 129

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 34/161 (21%), Positives = 51/161 (31%), Gaps = 60/161 (37%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELH 157
           L L GN F    +PK L++  +L  ++LS  R + +      N++ L  L LS       
Sbjct: 36  LYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY------ 87

Query: 158 AETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF 217
                                            N L  +            F  L S   
Sbjct: 88  ---------------------------------NRLRCIPP--------RTFDGLKS--- 103

Query: 218 SSLTTLDLSGNQFQGQIPSRLG---NLTSLKHLDLYSNQFN 255
             L  L L GN     +P   G   +L++L HL + +N   
Sbjct: 104 --LRLLSLHGNDIS-VVPE--GAFNDLSALSHLAIGANPLY 139

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.2 bits (141), Expect = 5e-09
 Identities = 56/339 (16%), Positives = 113/339 (33%), Gaps = 56/339 (16%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLV-----NLRYLNLSQARFTGMIPHQLG-----NLS 142
             +  LDLS N+   I     L         ++  LNLS          +L        +
Sbjct: 22  HGVTSLDLSLNNLYSIST-VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80

Query: 143 NLQYLDLSGVYFELHAETISWLSGL-----SLLEHLYISFVNLSKA-----SDSLLVINS 192
           N+  L+LSG    L  ++   L          +  L + + + S         +   + +
Sbjct: 81  NVTSLNLSGN--FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 193 LHSLKELKLSFCELHHF------PLLSSANFSSLTTLDLSGNQFQ----GQIPSRLGNL- 241
             S+  L L   +L          +L++   +++ +L+L GN        ++   L ++ 
Sbjct: 139 --SITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCAELAKFLASIP 195

Query: 242 TSLKHLDLYSNQFNSAVLGWLSKL-----NDLEVLSLEDNRLQGDIS---SLGLDNLTSI 293
            S+  LDL +N         L+ +     N +  L+L  N L G       L  D+L  +
Sbjct: 196 ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHL 255

Query: 294 QKLLLSWN------DELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYEL 347
           Q + L ++       E    +  +F  + K+        ++    S  +      ++ + 
Sbjct: 256 QTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKA 315

Query: 348 ESLYLRGCQIFGHLTNQ-----LGQFKRLNFLGLSNNQM 381
           +   L    +     +Q     L     L     +   +
Sbjct: 316 DVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.8 bits (140), Expect = 7e-09
 Identities = 47/279 (16%), Positives = 90/279 (32%), Gaps = 37/279 (13%)

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLV---INSLHSLKELKLSFCEL--HHFPLLSSA--- 215
            S    +  L +S  NL   S   L+    N+  S+  L LS   L   +   L      
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNL-----TSLKHLDLYSNQFNSAVLGWLSKL----- 265
             +++T+L+LSGN    +    L         ++  LDL  N F+S       +      
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 266 NDLEVLSLEDNRLQGD----ISSLGLDNLTSIQKLLLSWND--ELGGKIPTSFGKL--CK 317
             +  L+L  N L       +  +      ++  L L  N+           F       
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 318 LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI----FGHLTNQLGQFKRLNF 373
           +TS  +++  L       L      +   + SL L    +      +L       K L  
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257

Query: 374 LGLSNNQMDG-------SIPLSLGQMANLESLDLSNNKL 405
           + L  + +         ++  +   +  +  +D +  ++
Sbjct: 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 50/332 (15%), Positives = 104/332 (31%), Gaps = 68/332 (20%)

Query: 347 LESLYLRGCQIFGHLTNQLGQF-----KRLNFLGLSNNQMDGSIPLSLGQM-----ANLE 396
           + SL L G  +    +++L Q        +  L LS N +       L +        + 
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTIT 112

Query: 397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP 456
            LDL  N  +   S              +N  +              +T L LR   LG 
Sbjct: 113 VLDLGWNDFSSKSSSE-------FKQAFSNLPA-------------SITSLNLRGNDLGI 152

Query: 457 RFPLWL-----QLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVSGNQI-YGG 506
           +    L      +   +N L++    ++ K    + +   +       L++S N +    
Sbjct: 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS 212

Query: 507 VPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHF-- 564
             +    +      P+ ++    +L  N L G     +   ++  K+++ + L  +    
Sbjct: 213 YAEL---AYIFSSIPNHVV--SLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKN 267

Query: 565 ---------SEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGV 615
                        P+      ++  ++        S  + I  L  +R L+ + +     
Sbjct: 268 MSKEQCKALGAAFPNI----QKIILVDKNGKEIHPSHSIPISNL--IRELSGKADVP--- 318

Query: 616 IPTSFKNFSILEALDVGENELVGSIPTWIGER 647
              S  N  ++ A     N    +IP  + E 
Sbjct: 319 ---SLLNQCLIFAQKHQTNIEDLNIPDELRES 347

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS 256
           + L L   ++         +  +L  L L  NQ          +LT L  LDL +NQ   
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102

Query: 257 AVLGWLSKLNDLEVLSLEDNRLQGDISSL--GLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
                  +L  L+ L +  N+L      L  G++ LT +  L L  N +L      +F +
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDR 157

Query: 315 LCKLT 319
           L  LT
Sbjct: 158 LSSLT 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
             L L  NQ     P    +L +LK L L SNQ  +  +G    L  L VL L  N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 281 DISSL--GL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL 328
               L   + D L  +++L +  N +L  ++P    +L  LT  ++   +L
Sbjct: 102 ---VLPSAVFDRLVHLKELFMCCN-KL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 22/137 (16%)

Query: 291 TSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL 350
           T+ Q L L  N ++    P  F  L  L    + S +L   +    G+F      +L  L
Sbjct: 40  TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQL-GALPV--GVFDSLT--QLTVL 93

Query: 351 YLRGCQ-------IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNN 403
            L   Q       +F  L +       L  L +  N++   +P  + ++ +L  L L  N
Sbjct: 94  DLGTNQLTVLPSAVFDRLVH-------LKELFMCCNKL-TELPRGIERLTHLTHLALDQN 145

Query: 404 KLNGTVSEIHFVNLTKL 420
           +L  ++    F  L+ L
Sbjct: 146 QLK-SIPHGAFDRLSSL 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 12/127 (9%)

Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLS 613
           + L L  N  ++  P  + +   L+ L LG+N    +LP+ +  +LT L  L+L  N+L+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQL 669
            +    F     L+ L +  N+L   +P  I ER + L  L L  N+     HG F    
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGI-ERLTHLTHLALDQNQLKSIPHGAFD--- 156

Query: 670 CRLASLQ 676
            RL+SL 
Sbjct: 157 -RLSSLT 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
           + L L +N  T   P    +L +L+ L L +N+L  +    F + + L  LD+G N+L  
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
            +P+ + +R   L  L +  NK     P  + RL  L  L +  N L
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQL 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 31/185 (16%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISF 177
            +   L+L       +       L+ L +L+L   Y +L   +      L+ L  L    
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD--YNQLQTLSAGVFDDLTELGTLG--- 89

Query: 178 VNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
                     L  N L SL             PL    + + L  L L GNQ +  +PS 
Sbjct: 90  ----------LANNQLASL-------------PLGVFDHLTQLDKLYLGGNQLKS-LPSG 125

Query: 238 L-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
           +   LT LK L L +NQ  S   G   KL +L+ LSL  N+LQ  +     D L  +Q +
Sbjct: 126 VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTI 184

Query: 297 LLSWN 301
            L  N
Sbjct: 185 TLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 9/163 (5%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
             LDL          +    LT L  L+L  NQ  +   G    L +L  L L +N+L  
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96

Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPTS-FGKLCKLTSFSMASTKLSQDISEILGIF 339
            +     D+LT + KL L  N +L   +P+  F +L KL    + + +L Q I    G F
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGN-QL-KSLPSGVFDRLTKLKELRLNTNQL-QSIPA--GAF 151

Query: 340 SGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD 382
                  L++L L   Q+         +  +L  + L  NQ D
Sbjct: 152 DKLT--NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 12/142 (8%)

Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLS 613
           E L L +   +      +    +L  LNL  N    +L   +   LT L +L L NN+L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 614 GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF----HGDFPIQL 669
            +    F + + L+ L +G N+L  S+P+ + +R ++L  L L +N+      G F    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD--- 152

Query: 670 CRLASLQILDVAYNSLLGTIPR 691
            +L +LQ L +   + L ++P 
Sbjct: 153 -KLTNLQTLSL-STNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 27/169 (15%)

Query: 98  LDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDL-------- 149
           LDL       +        L  L +LNL   +   +      +L+ L  L L        
Sbjct: 40  LDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 150 -SGVYFELHAETISWLSG--LSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
             GV+  L      +L G  L  L                  V + L  LKEL+L+  +L
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSG---------------VFDRLTKLKELRLNTNQL 143

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN 255
              P  +    ++L TL LS NQ Q         L  L+ + L+ NQF+
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 55.7 bits (133), Expect = 3e-08
 Identities = 40/286 (13%), Positives = 94/286 (32%), Gaps = 33/286 (11%)

Query: 46  KWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDF 105
           K              E+ ++        +  +  + +        +L  L  + +    +
Sbjct: 60  KTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGY 119

Query: 106 QGIQIPKYLASLVNLRYL--NLSQARFTGMIPHQLGNLSNLQYLDLSGV---YFELHAET 160
           +G         +V  +    +     +  +   +   +S ++ +DLS V      L+   
Sbjct: 120 EGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQ-EISWIEQVDLSPVLDAMPLLNNLK 178

Query: 161 ISWLSGLSL-------LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF---- 209
           I   + LS+       L+ L I    L  +    ++ + L +L++L L      +     
Sbjct: 179 IKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238

Query: 210 -----PLLSSANFSSLTTLDLSGNQFQGQIPSRLGN---LTSLKHLDLYSNQFN----SA 257
                PL S   F +L  L +   + Q  +         L  L+ +D+ +          
Sbjct: 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL 298

Query: 258 VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDE 303
           +L  + K+  L+ ++++ N     +S      L     + +  +D 
Sbjct: 299 LLDHVDKIKHLKFINMKYNY----LSDEMKKELQKSLPMKIDVSDS 340

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.9 bits (97), Expect = 7e-04
 Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN---WPRLR 579
           L +G      +  ++  +F  +   + F  N+++L +        + + ++     P+L 
Sbjct: 226 LYVGVEDYGFDGDMN--VFRPLFSKDRF-PNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282

Query: 580 TLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLS 613
           T+++     T      L   +  +  L+ +N++ N LS
Sbjct: 283 TMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 197 KELKLSFCELHHFPLLSSANFSS---LTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSN 252
            EL L+  EL      S   F     L  L+L  NQ  G I        + ++ L L  N
Sbjct: 32  TELLLNDNELGRIS--SDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGEN 88

Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           +           L+ L+ L+L DN++   +     ++L S+  L L+ N
Sbjct: 89  KIKEISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHL 247
           +   L  L +L+L   +L      +    S +  L L  N+ + +I +++   L  LK L
Sbjct: 49  LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL 107

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
           +LY NQ +  + G    LN L  L+L  N
Sbjct: 108 NLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
                  ++EL+L   ++             L TL+L  NQ    +P    +L SL  L+
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132

Query: 249 LYSNQFN-SAVLGWLSK 264
           L SN FN +  L W ++
Sbjct: 133 LASNPFNCNCHLAWFAE 149

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQF 230
            +L +   +L    +   V + L SL +L L   +L   P       +SLT L+LS NQ 
Sbjct: 31  TYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88

Query: 231 QGQIPSRL-GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDN 289
           Q  +P+ +   LT LK L L +NQ  S   G   KL  L+ L L  N+L+  +     D 
Sbjct: 89  Q-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146

Query: 290 LTSIQKLLLSWN 301
           LTS+Q + L  N
Sbjct: 147 LTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 38/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
           +  T LDL  N  +         LTSL  L L  N+  S   G  +KL  L  L+L  N+
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 278 LQGDISSL--GL-DNLTSIQKLLLSWNDELGGKIPT-SFGKLCKLTSFSMASTKL 328
           LQ    SL  G+ D LT +++L L+ N +L   +P   F KL +L    +   +L
Sbjct: 88  LQ----SLPNGVFDKLTQLKELALNTN-QL-QSLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 10/117 (8%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
             L+L  N+           LTSL  L L  N+L  +    F   + L  L++  N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 639 SIPTWIGERFSRLMILILRSNKF----HGDFPIQLCRLASLQILDVAYNSLLGTIPR 691
           S+P  + ++ ++L  L L +N+      G F     +L  L+ L +  N  L ++P 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQ-LKSVPD 141

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 9e-08
 Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 192 SLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
              +L+ L L    L     L       L  L+LS N+  G +      L +L HL+L  
Sbjct: 47  EFVNLEFLSLINVGLISVSNLP--KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 252 NQFNS-AVLGWLSKLNDLEVLSLEDN 276
           N+    + L  L KL  L+ L L + 
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 6/118 (5%)

Query: 136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHS 195
            +    + ++ L L         +     +    LE L +  V L   S+    +  L  
Sbjct: 18  LRNRTPAAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISVSN----LPKLPK 72

Query: 196 LKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYSN 252
           LK+L+LS   +     + +    +LT L+LSGN+ +       L  L  LK LDL++ 
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 5/141 (3%)

Query: 60  LELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVN 119
           LEL  + P +  +          GKI     E  +L  L L       +     L  L  
Sbjct: 16  LELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN---LPKLPK 72

Query: 120 LRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVN 179
           L+ L LS+ R  G +      L NL +L+LSG   +    T+  L  L  L+ L +    
Sbjct: 73  LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCE 131

Query: 180 LSKASD-SLLVINSLHSLKEL 199
           ++  +D    V   L  L  L
Sbjct: 132 VTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 30/132 (22%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFLKLSTNHFS--E 566
               M   I   L   +   +    L     +        +   N+EFL L         
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS 65

Query: 567 GIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGV-IPTSFKNFSI 625
            +P      P+L+ L L  N   G L M    L +L  LNL  N+L  +      K    
Sbjct: 66  NLPKL----PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC 121

Query: 626 LEALDVGENELV 637
           L++LD+   E+ 
Sbjct: 122 LKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 192 SLHSLKELKLSFCELHHFPLLS-SANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY 250
           +  +++EL L  C+ +   +   +A F +L  L L        + S L  L  LK L+L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79

Query: 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG-LDNLTSIQKLLLSWN 301
            N+    +     KL +L  L+L  N+L+ DIS+L  L  L  ++ L L   
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLK-DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
              +  +I G+ +  V   LE L L    +   ++N L +  +L  L LS N++ G + +
Sbjct: 34  CKSNDGKIEGLTAEFV--NLEFLSLINVGL-ISVSN-LPKLPKLKKLELSENRIFGGLDM 89

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVS 422
              ++ NL  L+LS NKL    +      L  L S
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKS 124

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 751 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 810
            +  G+I         L+ L+L +      +  N+  +  ++ L+ S N++ G +     
Sbjct: 35  KSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAE 92

Query: 811 NLSFLNYLNLSNNNLN 826
            L  L +LNLS N L 
Sbjct: 93  KLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 8/123 (6%)

Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSG 341
              L      ++++L+L       GKI     +   L   S+ +  L       +     
Sbjct: 15  HLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-----VSNLPK 69

Query: 342 CVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM-DGSIPLSLGQMANLESLDL 400
               +L+ L L   +IFG L     +   L  L LS N++ D S    L ++  L+SLDL
Sbjct: 70  L--PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 401 SNN 403
            N 
Sbjct: 128 FNC 130

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 6/119 (5%)

Query: 159 ETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFS 218
           E  +  +       L +    +    +   +  +L     +  S  E+            
Sbjct: 10  EQAAQYTNAVRDRELDLRGYKIPVIEN---LGATLDQFDAIDFSDNEIRKLDGFP--LLR 64

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNS-AVLGWLSKLNDLEVLSLEDN 276
            L TL ++ N+           L  L  L L +N       L  L+ L  L  L +  N
Sbjct: 65  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 191 NSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS--RLGNLTSLKHLD 248
            +    +EL L   ++     L +        +D S N+    I        L  LK L 
Sbjct: 16  TNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNE----IRKLDGFPLLRRLKTLL 70

Query: 249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG-LDNLTSIQKL 296
           + +N+      G    L DL  L L +N     +  LG LD L S++ L
Sbjct: 71  VNNNRICRIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 30/168 (17%), Positives = 49/168 (29%), Gaps = 36/168 (21%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
                      LDL G      +IP                      I +    L     
Sbjct: 13  AQYTNAVRDRELDLRGY-----KIPV---------------------IENLGATLDQFDA 46

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
           +D S          +     L  L+ L ++   + +  + L    +L  L EL L+   L
Sbjct: 47  IDFSDNEI----RKLDGFPLLRRLKTLLVNNNRICRIGEGLD--QALPDLTELILTNNSL 100

Query: 207 HHFPLLSS-ANFSSLTTLDLSGNQFQGQIPSR---LGNLTSLKHLDLY 250
                L   A+  SLT L +  N    +   R   +  +  ++ LD  
Sbjct: 101 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS--EGIPDCWMNWPRLRTLNLGNNN 587
           DL    +   I +L   G       + +  S N     +G P       RL+TL + NN 
Sbjct: 25  DLRGYKIP-VIENL---GATL-DQFDAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNR 75

Query: 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGV-IPTSFKNFSILEALDVGENELV 637
                      L  L  L L NN L  +       +   L  L +  N + 
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 5/112 (4%)

Query: 740 LNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 799
               R +D+        I      L    +++ S N    ++ D   ++R +++L  + N
Sbjct: 18  AVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 800 QLSGQIPQSMSNLSFLNYLNLSNNNLN--GEIPSSTQLQSFDASSFAGNDLC 849
           ++          L  L  L L+NN+L   G++     L+S        N + 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 17/122 (13%)

Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWND--ELGGKIPTSFGKLCKLT 319
            +       L L   ++   I +LG   L     +  S N+  +L G     F  L +L 
Sbjct: 15  YTNAVRDRELDLRGYKIP-VIENLG-ATLDQFDAIDFSDNEIRKLDG-----FPLLRRLK 67

Query: 320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI--FGHLTNQLGQFKRLNFLGLS 377
           +  + + +    I  I       +  +L  L L    +   G L   L   K L +L + 
Sbjct: 68  TLLVNNNR----ICRIGEGLDQAL-PDLTELILTNNSLVELGDLDP-LASLKSLTYLCIL 121

Query: 378 NN 379
            N
Sbjct: 122 RN 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
            +    L+ L      L     L     + L  L+LS N+  G +        +L HL+L
Sbjct: 38  TDEFEELEFLSTINVGLTSIANLP--KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 250 YSNQFNS-AVLGWLSKLNDLEVLSLEDN 276
             N+    + +  L KL +L+ L L + 
Sbjct: 96  SGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 35/141 (24%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 60  LELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVN 119
           LEL  + P    +          GK+     E + L  L         I     L  L  
Sbjct: 9   LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNK 65

Query: 120 LRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVN 179
           L+ L LS  R +G +        NL +L+LSG   +    TI  L  L  L+ L +    
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNCE 124

Query: 180 LSKASD-SLLVINSLHSLKEL 199
           ++  +D    V   L  L  L
Sbjct: 125 VTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 9/128 (7%)

Query: 514 SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFLKLSTNHFS--EGIP 569
            M   I   L   +  D+    L  S  +           + +EFL       +    +P
Sbjct: 2   EMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP 61

Query: 570 DCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGV-IPTSFKNFSILEA 628
                  +L+ L L +N  +G L +      +L  LNL  N++  +      K    L++
Sbjct: 62  KL----NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

Query: 629 LDVGENEL 636
           LD+   E+
Sbjct: 118 LDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 328 LSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL 387
              +  ++ G+       ELE L      +   + N L +  +L  L LS+N++ G + +
Sbjct: 27  SRSNEGKLEGLTDEFE--ELEFLSTINVGL-TSIAN-LPKLNKLKKLELSDNRVSGGLEV 82

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVS 422
              +  NL  L+LS NK+    +      L  L S
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 285 LGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVA 344
           L     + +++L+L  +    GK+     +  +L   S  +  L+      +        
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-----IANLPKLN- 64

Query: 345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM-DGSIPLSLGQMANLESLDLSNN 403
            +L+ L L   ++ G L     +   L  L LS N++ D S    L ++ NL+SLDL N 
Sbjct: 65  -KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 192 SLHSLKELKLSFCELHHFPLLS-SANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY 250
           +   +KEL L     +   L   +  F  L  L          I + L  L  LK L+L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72

Query: 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG-LDNLTSIQKLLLSWN 301
            N+ +  +     K  +L  L+L  N+++ D+S++  L  L +++ L L   
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 755 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 814
           G++       + L+ L+  +   T  I  N+  +  ++ L+ S N++SG +         
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 815 LNYLNLSNNNLN 826
           L +LNLS N + 
Sbjct: 90  LTHLNLSGNKIK 101

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 30/84 (35%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
           ++   L L  NQ     P     LT L  LDL +NQ      G   KL  L  LSL DN+
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 278 LQGDISSLGLDNLTSIQKLLLSWN 301
           L+  I     DNL S+  + L  N
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 10/86 (11%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
           S TT+D SG      +P+  G  T+ + L LY NQ      G   +L  L  L L++N+L
Sbjct: 10  SGTTVDCSGKSLAS-VPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66

Query: 279 QGDISSL--GL-DNLTSIQKLLLSWN 301
                 L  G+ D LT + +L L+ N
Sbjct: 67  T----VLPAGVFDKLTQLTQLSLNDN 88

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
           +    L L+ NQ     P    +L +L+ L   SN+  +   G   KL  L  L L DN 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 278 LQGDISSLGLDNLTSIQKLLLSWN 301
           L+  I     DNL S+  + L  N
Sbjct: 93  LKS-IPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
             T ++    +    +P+  G  T  + L L +NQ      G    L +L+ L    N+L
Sbjct: 13  DQTLVNCQNIRLAS-VPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69

Query: 279 QGDISSL--GL-DNLTSIQKLLLSWN 301
                ++  G+ D LT + +L L+ N
Sbjct: 70  T----AIPTGVFDKLTQLTQLDLNDN 91

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 8/105 (7%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
           SS T L+L  N+ Q         LT L  L L  NQ  S   G   KL  L +L L +N+
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 278 LQGDISSL--GL-DNLTSIQKLLLSWNDELGGKIPTSFGKLCKLT 319
           LQ    SL  G+ D LT +++L L  N +L       F +L  L 
Sbjct: 88  LQ----SLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQ 127

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 7e-05
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 189 VINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL-GNLTSLKHL 247
           V + L  L +L LS  ++   P       + LT L L  N+ Q  +P+ +   LT LK L
Sbjct: 47  VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKEL 105

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            L +NQ  S   G   +L  L+ + L  N
Sbjct: 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 51.3 bits (123), Expect = 9e-07
 Identities = 52/291 (17%), Positives = 95/291 (32%), Gaps = 38/291 (13%)

Query: 141 LSNLQYLDLSGVYF-ELHAETIS--WLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLK 197
           LS+L+ L+L+GV    +    ++    SG   L+ + ++   L  A    L +      +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLRAR 129

Query: 198 ELKLSFCEL--HHFPLLSSA---NFSSLTTLDLSGNQFQGQ----IPSRLGNLTSLKHLD 248
           +L L    L       L      +   +TTL LS N         +   L   TS+ HL 
Sbjct: 130 KLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLS 189

Query: 249 LYSNQFNSAVLGWLSKL----NDLEVLSLEDNRLQGDIS----SLGLDNLTSIQKLLLSW 300
           L         L  L+        L+ L++  N   GD +    +       S++ L L +
Sbjct: 190 LLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA-GDTAALALARAAREHPSLELLHLYF 248

Query: 301 ND--ELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF 358
           N+    G +       L  L   +    ++   ++E   +        L  +  R    +
Sbjct: 249 NELSSEGRQ------VLRDLGGAAEGGARVVVSLTEGTAVSEYWSVI-LSEV-QRNLNSW 300

Query: 359 GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM----ANLESLDLSNNKL 405
                Q      L    L +++     P    Q+      + +L       
Sbjct: 301 DRARVQRH--LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 38/243 (15%), Positives = 71/243 (29%), Gaps = 60/243 (24%)

Query: 177 FVNLSKASDSLLVINSLHSLKELKLSFCEL--HHFPLLSSA---NFSSLTTLDLSGNQFQ 231
                +  +       L SL++L L+   +      ++++       +L  ++L+  Q  
Sbjct: 55  LFFHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD 114

Query: 232 GQIPSRLGN-LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNL 290
                 L       + L L  N         L      ++L                 + 
Sbjct: 115 PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR-----DLLL---------------HDQ 154

Query: 291 TSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL 350
             I  L LS N                LT+  +        + E L          +  L
Sbjct: 155 CQITTLRLSNNP---------------LTAAGV------AVLMEGLA-----GNTSVTHL 188

Query: 351 YLRGCQI----FGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMAN--LESLDLSN 402
            L    +       L  QL + ++L  L ++ N      ++ L+     +  LE L L  
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248

Query: 403 NKL 405
           N+L
Sbjct: 249 NEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 44/287 (15%), Positives = 89/287 (31%), Gaps = 29/287 (10%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLA-----SLVNLRYLNLSQARFTGMIPHQLGN-LSNLQ 145
           L  L  L+L+G     ++    +A         L  +NL+  +        L       +
Sbjct: 71  LSSLRQLNLAGVRMTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRAR 129

Query: 146 YLDLSGVYF-ELHAETISWLSGL----SLLEHLYISFVNLSKASDSLL--VINSLHSLKE 198
            L L          + +     L      +  L +S   L+ A  ++L   +    S+  
Sbjct: 130 KLGLQLNSLGPEACKDLR--DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTH 187

Query: 199 LKLSFCELHHF--PLLSSA--NFSSLTTLDLSGNQFQGQ----IPSRLGNLTSLKHLDLY 250
           L L    L      LL++       L  L+++ N         +        SL+ L LY
Sbjct: 188 LSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPT 310
            N+ +S     L  L               + +++       + ++  + N     ++  
Sbjct: 248 FNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQR 307

Query: 311 SFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI 357
               L +    S  +T      +++L      V  E+ +L  +    
Sbjct: 308 HLELLLRDLEDSRGATLNPWRKAQLL-----RVEGEVRALLEQLGSS 349

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 35/262 (13%)

Query: 374 LGLS---NNQMDGSIPLSLGQMANLESLDLSNNKL----NGTVSEIHFVNLTKLVSFLAN 426
           +GL    N  +   +   +  +  LE+      KL       +     ++      +   
Sbjct: 4   VGLLSAHNRAVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFF-HYEFQ 62

Query: 427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPR------FPLWLQLQKKLNDLDISSTRISD 480
                 ++  +      L  L L    + P         L    +  L++++++S ++  
Sbjct: 63  NQRFSAEVLSS------LRQLNLAGVRMTPVKCTVVAAVL-GSGRHALDEVNLASCQLDP 115

Query: 481 KIPRAFWNSIFQYYYLNVSGNQI-YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGS 539
              R       +   L +  N +              L++     + ++  LSNN L+ +
Sbjct: 116 AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD----LLLHDQCQITTL-RLSNNPLTAA 170

Query: 540 IFHLICQGENFSKNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTGS---- 591
              ++ +G   + ++  L L      +     +        +L+ LN+  N    +    
Sbjct: 171 GVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230

Query: 592 LPMSIGTLTSLRSLNLRNNRLS 613
           L  +     SL  L+L  N LS
Sbjct: 231 LARAAREHPSLELLHLYFNELS 252

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 185 DSLLVINSLHSLKELKLSFC-ELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS 243
           DSL  +    +L EL +     L H  L        L  L +  +  +   P        
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 244 LKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ 279
           L  L+L  N   S     +  L+ L+ L L  N L 
Sbjct: 82  LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.1 bits (119), Expect = 2e-06
 Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 12/158 (7%)

Query: 576 PRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
             L  L + N      L    +  L  LR+L +  + L  V P +F     L  L++  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 635 ELVGSIPTWIGERFS--RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRC 692
            L  S+     +      L  L+L  N  H       C L  LQ  +      +      
Sbjct: 91  ALE-SLS---WKTVQGLSLQELVLSGNPLHCS-----CALRWLQRWEEEGLGGVPEQKLQ 141

Query: 693 INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK 730
            +    +A   ++      L     +  +     ++++
Sbjct: 142 CHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLR 179

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 5e-06
 Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 3/111 (2%)

Query: 154 FELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLS 213
            +   +++  L G   L  LYI      +  +    +  L  L+ L +    L      +
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 214 SANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN-SAVLGWLS 263
                 L+ L+LS N  +  +  +     SL+ L L  N  + S  L WL 
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 9/95 (9%)

Query: 85  INPSLLELKHLVHLDLSGNDFQGIQ-IPKY-LASLVNLRYLNLSQARFTGMIPHQLGNLS 142
               L   ++L  L +     Q +Q +    L  L  LR L + ++    + P       
Sbjct: 23  SLHHLPGAENLTELYIENQ--QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80

Query: 143 NLQYLDLSGVYFE-LHAETISWLSGLSLLEHLYIS 176
            L  L+LS    E L  +T+  LS    L+ L +S
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS----LQELVLS 111

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIPQSMSNLSF 814
           +    +   + L  L + +      +    +  +  + +L    + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 815 LNYLNLSNNNL 825
           L+ LNLS N L
Sbjct: 82  LSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 108 IQIPKYLASLVNLRYLNLSQARFTGMIP-HQLGNLSNLQYLDLSG---VYFELHAETISW 163
           +    +L    NL  L +   +    +    L  L  L+ L +      +    A     
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA----- 75

Query: 164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSL 196
                 L  L +SF  L   S   +   SL  L
Sbjct: 76  FHFTPRLSRLNLSFNALESLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 740 LNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGV-MRSIESLDFS 797
              +  + I        + +     L  L++L +  +     +  +       +  L+ S
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826
            N L     +++  LS L  L LS N L+
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 8e-04
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 591 SLPMSIGTLTSLRSLNLRNNRLSGVIPT-SFKNFSILEALDVGENELVGSIPTWIGERFS 649
                +    +L  L + N +    +     +    L  L + ++ L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
           RL  L L  N        +  +  SLQ L ++ N L
Sbjct: 81  RLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 18/113 (15%), Positives = 48/113 (42%), Gaps = 5/113 (4%)

Query: 118 VNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH--LYI 175
             ++ ++ + +    +    +  L  ++ + L   ++ +    +  LS L  L+   L +
Sbjct: 61  YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEM 119

Query: 176 SFVNLSKASD-SLLVINSLHSLKELKLSFCE-LHHFPLLSSANFSSLTTLDLS 226
             ++    +D  ++ ++   +LK L LS    +     +  A  +SL +L+L 
Sbjct: 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 10/115 (8%)

Query: 95  LVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQ-ARFTGMIPHQLGNLSN----LQYLDL 149
           +  +D + +    I    ++  L  +  + L +          +L  L N    +  +++
Sbjct: 63  IQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121

Query: 150 SGVYFELHAETISWLSGLSLLEHLYISFVNLSKASD-SLLVINSLHSLKELKLSF 203
                 +  + I  L     L++L++S  +L    +   +V     SL  L+L  
Sbjct: 122 IS-CGNVTDKGIIALHHFRNLKYLFLS--DLPGVKEKEKIVQAFKTSLPSLELKL 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	931
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.9
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.82
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.49
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.16
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.75
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.25
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.49
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.09
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.77
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.65

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.7e-90  Score=835.70  Aligned_cols=714  Identities=30%  Similarity=0.431  Sum_probs=576.6

Q ss_pred             CCCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcCccceEecCCCCcEEEEEcCCCCCCCchhhhccccccee--
Q 002360            7 CNGTSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCKWGGVLCGNFTGHVLELNLQNPFSPDDNEAYQRSMLVGK--   84 (931)
Q Consensus         7 ~~~~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~w~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~--   84 (931)
                      |.++.+.++|++||++||+++.||. .+++|. .+++||.|+||+|+  .+||++|+|++.            .+.|.  
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~-~~~~~C~w~gv~C~--~~~v~~L~L~~~------------~l~g~~~   67 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWS-SNKNPCTFDGVTCR--DDKVTSIDLSSK------------PLNVGFS   67 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCC-TTSCGGGSTTEEEE--TTEEEEEECTTS------------CCCEEHH
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCC-CCCCCcCCcceEEC--CCcEEEEECCCC------------CcCCccC
Confidence            5667788899999999999999998 899998 67899999999998  689999999996            78888  


Q ss_pred             -ecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCc--ccCCCCCCCEEEccCCcccccccCc
Q 002360           85 -INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPH--QLGNLSNLQYLDLSGVYFELHAETI  161 (931)
Q Consensus        85 -l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~L~~L~~L~Ls~n~~~~~~~~~  161 (931)
                       +++++.++++|+.++++.+.+.  .+|+.++.+++|++|+|++|.+.+.+|.  .++++++|++|+|++|.+...... 
T Consensus        68 ~l~~~l~~L~~L~~l~~~~~~~~--~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-  144 (768)
T 3rgz_A           68 AVSSSLLSLTGLESLFLSNSHIN--GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-  144 (768)
T ss_dssp             HHHHHTTTCTTCCEEECTTSCEE--ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSC-
T ss_pred             ccChhHhccCcccccCCcCCCcC--CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCH-
Confidence             8999999999999999999876  4578899999999999999999998998  999999999999999987533221 


Q ss_pred             cccCCCCCCCeEEccCcccCCCCchH-HHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccC
Q 002360          162 SWLSGLSLLEHLYISFVNLSKASDSL-LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGN  240 (931)
Q Consensus       162 ~~l~~l~~L~~L~l~~n~~~~~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  240 (931)
                      ..+.++++|++|++++|.++...... ..+.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+.+|. ++.
T Consensus       145 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~  221 (768)
T 3rgz_A          145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGD  221 (768)
T ss_dssp             CSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTT
T ss_pred             HHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-ccc
Confidence            12478999999999999998764332 236789999999999999887665  37899999999999999987777 999


Q ss_pred             CCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCC-CCCc
Q 002360          241 LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKL-CKLT  319 (931)
Q Consensus       241 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l-~~L~  319 (931)
                      +++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..   .+++|++|++++| .+.+.+|..+... ++|+
T Consensus       222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT  297 (768)
T ss_dssp             CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred             CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence            999999999999999899999999999999999999998877753   7889999999999 8888888887764 8888


Q ss_pred             EEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccc-cCCCCCCCEEeccCCcCCcCccccccCCC-CCCE
Q 002360          320 SFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQ-LGQFKRLNFLGLSNNQMDGSIPLSLGQMA-NLES  397 (931)
Q Consensus       320 ~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~  397 (931)
                      +|++++|.+.+.+|..++.+     ++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++
T Consensus       298 ~L~Ls~n~l~~~~p~~~~~l-----~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  372 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPFFGSC-----SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT  372 (768)
T ss_dssp             EEECCSSEEEECCCGGGGGC-----TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred             EEECcCCcCCCccchHHhcC-----CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence            88888888877777777766     77888888888777666654 77777788888877777777777777766 7777


Q ss_pred             EEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCC
Q 002360          398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR  477 (931)
Q Consensus       398 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~  477 (931)
                      |++++|++++.++.. +..                      ..+++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus       373 L~Ls~N~l~~~~~~~-~~~----------------------~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  429 (768)
T 3rgz_A          373 LDLSSNNFSGPILPN-LCQ----------------------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY  429 (768)
T ss_dssp             EECCSSEEEEECCTT-TTC----------------------STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEccCCCcCCCcChh-hhh----------------------cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc
Confidence            777777776655542 221                      113455556666666655666667777777777777777


Q ss_pred             CCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE
Q 002360          478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL  557 (931)
Q Consensus       478 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L  557 (931)
                      +++.+|..+.. +++|++|++++|.+.+.+|.                                 .    +..+++|++|
T Consensus       430 l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~---------------------------------~----~~~l~~L~~L  471 (768)
T 3rgz_A          430 LSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQ---------------------------------E----LMYVKTLETL  471 (768)
T ss_dssp             EESCCCGGGGG-CTTCCEEECCSSCCCSCCCG---------------------------------G----GGGCTTCCEE
T ss_pred             ccCcccHHHhc-CCCCCEEECCCCcccCcCCH---------------------------------H----HcCCCCceEE
Confidence            76666655432 45555555555555443332                                 1    1225678888


Q ss_pred             ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360          558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      ++++|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..+..+++|++|++++|+++
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            88888888778888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCchhHHhhcCcCcEEEccCc----------------------cccccCCcccCCCCCcCEEEccCCccccccCccccc
Q 002360          638 GSIPTWIGERFSRLMILILRSN----------------------KFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN  695 (931)
Q Consensus       638 ~~~p~~~~~~l~~L~~L~L~~n----------------------~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  695 (931)
                      |.+|.+++ ....+..+++..+                      .+.+..+..+..++.++.++++.|.+.|.+|..+++
T Consensus       552 g~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~  630 (768)
T 3rgz_A          552 GTIPAAMF-KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN  630 (768)
T ss_dssp             SBCCGGGG-TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS
T ss_pred             CcCChHHh-cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhc
Confidence            88888776 3444443333221                      233445555666677777788888888888877776


Q ss_pred             cccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCC
Q 002360          696 FSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHN  775 (931)
Q Consensus       696 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N  775 (931)
                      ++.|                                            +.|||++|+++|.+|..++.++.|++|+|++|
T Consensus       631 l~~L--------------------------------------------~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N  666 (768)
T 3rgz_A          631 NGSM--------------------------------------------MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN  666 (768)
T ss_dssp             SBCC--------------------------------------------CEEECCSSCCBSCCCGGGGGCTTCCEEECCSS
T ss_pred             cccc--------------------------------------------cEEECcCCcccccCCHHHhccccCCEEeCcCC
Confidence            6655                                            89999999999999999999999999999999


Q ss_pred             cCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCCCC
Q 002360          776 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLS  854 (931)
Q Consensus       776 ~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~  854 (931)
                      +++|.||..++++++|++||||+|+++|.+|..+..+++|++||+++|+++|.||..+|+.++...+|.|| +|||.|+.
T Consensus       667 ~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~  746 (768)
T 3rgz_A          667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP  746 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred             ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999 89999988


Q ss_pred             CCC
Q 002360          855 SCT  857 (931)
Q Consensus       855 ~c~  857 (931)
                      .|.
T Consensus       747 ~C~  749 (768)
T 3rgz_A          747 RCD  749 (768)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            896

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.2e-70  Score=660.14  Aligned_cols=622  Identities=28%  Similarity=0.355  Sum_probs=505.9

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchh--hhhcCCCCceeecccccccccCCccc-CCCCCCCEEEccCCccccccc-
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPK--YLASLVNLRYLNLSQARFTGMIPHQL-GNLSNLQYLDLSGVYFELHAE-  159 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~~-~~L~~L~~L~Ls~n~~~~~~~-  159 (931)
                      .+|..+.++++|++|+|++|.+++. +|.  .++++++|++|+|++|.+.+..|..+ .++++|++|++++|.+..... 
T Consensus        91 ~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  169 (768)
T 3rgz_A           91 GSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV  169 (768)
T ss_dssp             ECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHH
T ss_pred             CCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCCh
Confidence            3558899999999999999999875 777  89999999999999999998888776 899999999999999865432 


Q ss_pred             CccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCccccc
Q 002360          160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLG  239 (931)
Q Consensus       160 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  239 (931)
                      ....+.++++|++|++++|.++....    +..+++|++|++++|.+.+..+. +.++++|++|++++|.+++.+|..++
T Consensus       170 ~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~  244 (768)
T 3rgz_A          170 GWVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS  244 (768)
T ss_dssp             HHHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTT
T ss_pred             hhhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHh
Confidence            22236899999999999999987644    36899999999999999998776 99999999999999999999999999


Q ss_pred             CCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCc
Q 002360          240 NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLT  319 (931)
Q Consensus       240 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  319 (931)
                      .+++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|......+++|++|++++| .+.+.+|..++++++|+
T Consensus       245 ~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~  321 (768)
T 3rgz_A          245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAVPPFFGSCSLLE  321 (768)
T ss_dssp             TCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECCCGGGGGCTTCC
T ss_pred             cCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCccchHHhcCCCcc
Confidence            9999999999999998877765  89999999999999999999884444599999999999 99999999999999999


Q ss_pred             EEEcCCCcCCCcchhh-hhhcccccccCccEEEcCCcccccccccccCCCC-CCCEEeccCCcCCcCccccccC--CCCC
Q 002360          320 SFSMASTKLSQDISEI-LGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK-RLNFLGLSNNQMDGSIPLSLGQ--MANL  395 (931)
Q Consensus       320 ~L~l~~~~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L  395 (931)
                      +|++++|.+.+.+|.. +..+     ++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.+|..+..  +++|
T Consensus       322 ~L~L~~n~l~~~ip~~~l~~l-----~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L  396 (768)
T 3rgz_A          322 SLALSSNNFSGELPMDTLLKM-----RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL  396 (768)
T ss_dssp             EEECCSSEEEEECCHHHHTTC-----TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred             EEECCCCcccCcCCHHHHhcC-----CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence            9999999999888765 7777     8999999999999999999998887 9999999999999888888776  8899


Q ss_pred             CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360          396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS  475 (931)
Q Consensus       396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~  475 (931)
                      ++|++++|++++.+|. .+.++++|+.|++++|.+....+..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus       397 ~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             CEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             cEEECCCCccccccCH-HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            9999999999887776 677777777777666666554444444444444444444444444444444444444444444


Q ss_pred             CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360          476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE  555 (931)
Q Consensus       476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~  555 (931)
                      |++++.+|..+.                                                              .+++|+
T Consensus       476 N~l~~~~p~~l~--------------------------------------------------------------~l~~L~  493 (768)
T 3rgz_A          476 NDLTGEIPSGLS--------------------------------------------------------------NCTNLN  493 (768)
T ss_dssp             SCCCSCCCGGGG--------------------------------------------------------------GCTTCC
T ss_pred             CcccCcCCHHHh--------------------------------------------------------------cCCCCC
Confidence            444444333321                                                              245666


Q ss_pred             EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC-
Q 002360          556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN-  634 (931)
Q Consensus       556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-  634 (931)
                      +|++++|++++.+|.++..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+.....+..+++..+ 
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~  573 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK  573 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence            6666666666666666666667777777777776666666666677777777777776666666665554444433321 


Q ss_pred             ---------------------cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccc
Q 002360          635 ---------------------ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCI  693 (931)
Q Consensus       635 ---------------------~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~  693 (931)
                                           .+.+..+..+. .++.++.++++.|.+.|.+|..+..+++|+.|||++|+++|.+|..+
T Consensus       574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l  652 (768)
T 3rgz_A          574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI  652 (768)
T ss_dssp             EEEEEECCSCCTTCCSSEEEEECTTCCGGGGG-GGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred             cccccccccccccccccccccccccccchhhh-ccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence                                 23445555555 67888889999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEcc
Q 002360          694 NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLS  773 (931)
Q Consensus       694 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls  773 (931)
                      ++++.|                                            +.|||++|+++|.+|..++++++|++||||
T Consensus       653 ~~l~~L--------------------------------------------~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs  688 (768)
T 3rgz_A          653 GSMPYL--------------------------------------------FILNLGHNDISGSIPDEVGDLRGLNILDLS  688 (768)
T ss_dssp             GGCTTC--------------------------------------------CEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred             hccccC--------------------------------------------CEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence            888776                                            889999999999999999999999999999


Q ss_pred             CCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcc-cccc
Q 002360          774 HNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN-LNGE  828 (931)
Q Consensus       774 ~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~-l~g~  828 (931)
                      +|+++|.||..++.+++|++||+|+|+++|.||.. ..+..+....+.+|+ |+|.
T Consensus       689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred             CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence            99999999999999999999999999999999975 445566667788886 6664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.9e-59  Score=559.91  Aligned_cols=601  Identities=18%  Similarity=0.155  Sum_probs=424.0

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      .+|..+.  +++++|+|++|.+++. .+..|+++++|++|+|++|.+++..|.+|+++++|++|++++|.+..++..   
T Consensus        18 ~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~---   91 (680)
T 1ziw_A           18 QVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK---   91 (680)
T ss_dssp             SCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT---
T ss_pred             ccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh---
Confidence            3555443  5777777777777765 455677777777777777777766677777777777777776665544432   


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS  243 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  243 (931)
                                               .+..+++|++|++++|.+.++++..+.++++|++|++++|.+.+..|..++.+++
T Consensus        92 -------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  146 (680)
T 1ziw_A           92 -------------------------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN  146 (680)
T ss_dssp             -------------------------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred             -------------------------hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence                                     2456777888888888888887777888888888888888888777777788888


Q ss_pred             CCEEEcCCCccccccccccc--CCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccC---CCCCC
Q 002360          244 LKHLDLYSNQFNSAVLGWLS--KLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFG---KLCKL  318 (931)
Q Consensus       244 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~---~l~~L  318 (931)
                      |++|++++|.+++..+..+.  .+++|+.|++++|.+.+..+.. +..+++|+.|++.++ .+.+.....+.   ..++|
T Consensus       147 L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L  224 (680)
T 1ziw_A          147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC-FHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSI  224 (680)
T ss_dssp             CCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG-GGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCC
T ss_pred             CCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh-hhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccc
Confidence            88888888888776666554  4577888888888776544444 677777777777776 44332211111   23566


Q ss_pred             cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEE
Q 002360          319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL  398 (931)
Q Consensus       319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  398 (931)
                      +.|++++|.+.+..+..+..+..   ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..+.++++|++|
T Consensus       225 ~~L~L~~n~l~~~~~~~~~~l~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  301 (680)
T 1ziw_A          225 RNLSLSNSQLSTTSNTTFLGLKW---TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL  301 (680)
T ss_dssp             CEEECTTSCCCEECTTTTGGGGG---SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred             cEEEccCCcccccChhHhhccCc---CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence            77777777666666655554411   336777777776666666666666677777777776666666666666667777


Q ss_pred             EccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCC
Q 002360          399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRI  478 (931)
Q Consensus       399 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i  478 (931)
                      ++++|...+.++.   ..++             ......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       302 ~L~~~~~~~~~~~---~~lp-------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          302 NLKRSFTKQSISL---ASLP-------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             ECTTCBCCC---------CC-------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBS
T ss_pred             eccchhhhccccc---cccc-------------ccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCch
Confidence            6666554432221   0111             11111233344444555555544444444444444444444444443


Q ss_pred             CCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEE
Q 002360          479 SDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLK  558 (931)
Q Consensus       479 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~  558 (931)
                      .                         +.....                       ..+         .. ...++|+.|+
T Consensus       366 ~-------------------------~~~l~~-----------------------~~f---------~~-~~~~~L~~L~  387 (680)
T 1ziw_A          366 S-------------------------LRTLTN-----------------------ETF---------VS-LAHSPLHILN  387 (680)
T ss_dssp             C-------------------------CCEECT-----------------------TTT---------GG-GTTSCCCEEE
T ss_pred             h-------------------------hhhcch-----------------------hhh---------cc-cccCcCceEE
Confidence            2                         110000                       000         00 0125789999


Q ss_pred             CcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360          559 LSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       559 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      +++|++++..|..|..+++|+.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.
T Consensus       388 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~  467 (680)
T 1ziw_A          388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK  467 (680)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCB
T ss_pred             CCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccc
Confidence            99999999889999999999999999999987766 67889999999999999999888999999999999999999986


Q ss_pred             --ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccc
Q 002360          638 --GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAF  715 (931)
Q Consensus       638 --~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  715 (931)
                        +.+|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..-+                  
T Consensus       468 ~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~------------------  528 (680)
T 1ziw_A          468 NVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP------------------  528 (680)
T ss_dssp             CTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSC------------------
T ss_pred             ccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCc------------------
Confidence              56777776 799999999999999988888899999999999999999865332211000                  


Q ss_pred             cCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEe
Q 002360          716 SGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLD  795 (931)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~Ld  795 (931)
                                        ......++.|+.|+|++|+++...+..|.++++|++|+|++|++++..+..|..+++|+.|+
T Consensus       529 ------------------~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  590 (680)
T 1ziw_A          529 ------------------IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN  590 (680)
T ss_dssp             ------------------CCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ------------------chhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEE
Confidence                              00012245569999999999955455799999999999999999977777789999999999


Q ss_pred             ccCCcCcccCccccc-CCCCCCeeeCCCccccccCCC
Q 002360          796 FSANQLSGQIPQSMS-NLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       796 Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus       591 L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          591 LQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             CTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            999999999888887 789999999999999998874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.8e-57  Score=547.03  Aligned_cols=574  Identities=23%  Similarity=0.266  Sum_probs=427.1

Q ss_pred             CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360           56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP  135 (931)
Q Consensus        56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  135 (931)
                      ..++++|+++++            .+.+..+..+.++++|++|+|++|.+++. .|..|+++++|++|+|++|.+++..+
T Consensus        24 ~~~l~~L~Ls~n------------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~   90 (680)
T 1ziw_A           24 PTNITVLNLTHN------------QLRRLPAANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSD   90 (680)
T ss_dssp             CTTCSEEECCSS------------CCCCCCGGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCcEEECCCC------------CCCCcCHHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccCh
Confidence            458999999996            56665566799999999999999999986 68999999999999999999996555


Q ss_pred             cccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccC
Q 002360          136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA  215 (931)
Q Consensus       136 ~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  215 (931)
                      .+|+++++|++|++++|.+..++..                            .+..+++|++|++++|.+.+.++..+.
T Consensus        91 ~~~~~l~~L~~L~L~~n~l~~~~~~----------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~  142 (680)
T 1ziw_A           91 KTFAFCTNLTELHLMSNSIQKIKNN----------------------------PFVKQKNLITLDLSHNGLSSTKLGTQV  142 (680)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCSC----------------------------TTTTCTTCCEEECCSSCCSCCCCCSSS
T ss_pred             hhhccCCCCCEEECCCCccCccChh----------------------------HccccCCCCEEECCCCcccccCchhhc
Confidence            6899999999999999987655432                            255788899999999999999998999


Q ss_pred             CCCCCCEEEccCCcCCCCCccccc--CCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccc--cCCCC
Q 002360          216 NFSSLTTLDLSGNQFQGQIPSRLG--NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLG--LDNLT  291 (931)
Q Consensus       216 ~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~  291 (931)
                      ++++|++|++++|.+++..+..+.  .+++|++|++++|.+++..+..+..+++|+.|++.++.+.+......  ....+
T Consensus       143 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~  222 (680)
T 1ziw_A          143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANT  222 (680)
T ss_dssp             CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTS
T ss_pred             ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhc
Confidence            999999999999999987776654  56899999999999999999999999999999999998764322110  11347


Q ss_pred             CccEEEccCCCCCcccCCcccCCCCC--CcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC
Q 002360          292 SIQKLLLSWNDELGGKIPTSFGKLCK--LTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK  369 (931)
Q Consensus       292 ~L~~L~L~~n~~~~~~~~~~~~~l~~--L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  369 (931)
                      +|++|++++| .+.+..|.++.+++.  |+.|++++|.+.+..+..++.+     ++|++|++++|.+.+..+..+..++
T Consensus       223 ~L~~L~L~~n-~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~  296 (680)
T 1ziw_A          223 SIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-----PQLEYFFLEYNNIQHLFSHSLHGLF  296 (680)
T ss_dssp             CCCEEECTTS-CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-----TTCCEEECCSCCBSEECTTTTTTCT
T ss_pred             cccEEEccCC-cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-----ccccEeeCCCCccCccChhhhcCCC
Confidence            8999999999 899999999988865  9999999999998888888777     8999999999999999999999999


Q ss_pred             CCCEEeccCCcCCc-----Cccc----cccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCC
Q 002360          370 RLNFLGLSNNQMDG-----SIPL----SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVP  440 (931)
Q Consensus       370 ~L~~L~L~~n~l~~-----~~p~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  440 (931)
                      +|++|++++|...+     .+|.    .+..+++|++|++++|++.+..+. .|.++++|+++++++|.+....      
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~------  369 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN-MFTGLINLKYLSLSNSFTSLRT------  369 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT-TTTTCTTCCEEECTTCBSCCCE------
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh-HhccccCCcEEECCCCchhhhh------
Confidence            99999999876553     2232    677888899999999988864443 5666777666666665422100      


Q ss_pred             CccccEEEccCCCCCCCcChhhhc--cCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcc
Q 002360          441 PFQLTVLELRSCHLGPRFPLWLQL--QKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLI  518 (931)
Q Consensus       441 ~~~L~~L~L~~~~l~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~  518 (931)
                                      ..+..+..  .++|+.|++++|++++..|..+.                               
T Consensus       370 ----------------l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~-------------------------------  402 (680)
T 1ziw_A          370 ----------------LTNETFVSLAHSPLHILNLTKNKISKIESDAFS-------------------------------  402 (680)
T ss_dssp             ----------------ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT-------------------------------
T ss_pred             ----------------cchhhhcccccCcCceEECCCCCCCeEChhhhh-------------------------------
Confidence                            01111111  13555555555555543332221                               


Q ss_pred             cCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCCCCCCEEecCCCcceecCCCccc
Q 002360          519 ITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSLPMSIG  597 (931)
Q Consensus       519 ~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~~~  597 (931)
                                                     .+++|+.|++++|++++.+| ..|..+++|++|++++|++.+..+..|.
T Consensus       403 -------------------------------~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  451 (680)
T 1ziw_A          403 -------------------------------WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA  451 (680)
T ss_dssp             -------------------------------TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred             -------------------------------CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence                                           13445555555555544333 3455555555555555555555555555


Q ss_pred             CCCCCCEEEccCCcCc--cccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccC--------Cc
Q 002360          598 TLTSLRSLNLRNNRLS--GVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDF--------PI  667 (931)
Q Consensus       598 ~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~--------p~  667 (931)
                      .+++|++|++++|.+.  +..|..|.++++|++|++++|++++ +|...+..+++|++|++++|++++..        +.
T Consensus       452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  530 (680)
T 1ziw_A          452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY  530 (680)
T ss_dssp             TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred             cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc-CChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence            5555555555555554  3445555555556666666665553 33332234555666666666555431        22


Q ss_pred             ccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEE
Q 002360          668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID  747 (931)
Q Consensus       668 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld  747 (931)
                      .+..+++|+.|+|++|+++...+..|.++++|                                            +.||
T Consensus       531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L--------------------------------------------~~L~  566 (680)
T 1ziw_A          531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFEL--------------------------------------------KIID  566 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------------------CEEE
T ss_pred             hhcCCCCCCEEECCCCCCCCCCHHHcccccCc--------------------------------------------ceeE
Confidence            47788999999999999984444456666655                                            8899


Q ss_pred             cccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc-CcCCCCEEeccCCcCcccCc
Q 002360          748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG-VMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       748 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~LdLs~N~l~~~~p  806 (931)
                      |++|++++..+..|..+++|++|+|++|++++..|..++ .+++|+.|++++|++.+.-+
T Consensus       567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            999999977777789999999999999999988888787 78999999999999997654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.7e-54  Score=512.24  Aligned_cols=530  Identities=20%  Similarity=0.208  Sum_probs=367.8

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      .+|..+.  +++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|.+|+++++|++|++++|.+...+..   
T Consensus        26 ~iP~~l~--~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---   99 (606)
T 3t6q_A           26 EIPGTLP--NSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET---   99 (606)
T ss_dssp             SCCTTSC--TTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT---
T ss_pred             cCcCCCC--CcCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh---
Confidence            4555553  3678888888888865 467788888888888888888877788888888888888887766543221   


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS  243 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  243 (931)
                                               .+..+++|++|++++|.++++.+..+.++++|++|++++|++.+..+..+..+++
T Consensus       100 -------------------------~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  154 (606)
T 3t6q_A          100 -------------------------ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK  154 (606)
T ss_dssp             -------------------------TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred             -------------------------hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence                                     2567888999999999999988888999999999999999998755455666999


Q ss_pred             CCEEEcCCCcccccccccccCCCCCC--EEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360          244 LKHLDLYSNQFNSAVLGWLSKLNDLE--VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF  321 (931)
Q Consensus       244 L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  321 (931)
                      |++|++++|.+++..+..++.+++|+  .|++++|.+.+..+.. + ....|++|++++|.    ..+..+..+..++..
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~-~-~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~  228 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA-F-DSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQ  228 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT-T-TTCEEEEEECTTCS----CHHHHHHHTTTCEEE
T ss_pred             cCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhH-h-hhccccccccCCch----hHHHHhhhccccchh
Confidence            99999999999888888899999999  8999999988655543 3 44678888888873    233334444444333


Q ss_pred             EcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC--CCCEEeccCCcCCcCccccccCCCCCCEEE
Q 002360          322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLNFLGLSNNQMDGSIPLSLGQMANLESLD  399 (931)
Q Consensus       322 ~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  399 (931)
                      .+....+..                +....+.        +..+..+.  +|++|++++|.+.+..+..|+.+++|++|+
T Consensus       229 ~l~~~~~~~----------------~~~~~i~--------~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  284 (606)
T 3t6q_A          229 SLWLGTFED----------------MDDEDIS--------PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD  284 (606)
T ss_dssp             EEECCCCTT----------------SCCCCCC--------GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred             heechhhcc----------------ccccccC--------hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence            332221111                0000000        01111111  344444444444443333344444444444


Q ss_pred             ccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC
Q 002360          400 LSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS  479 (931)
Q Consensus       400 L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~  479 (931)
                      +++|+++ .                                                 +|..+..+++|++|++++|+++
T Consensus       285 l~~n~l~-~-------------------------------------------------lp~~l~~l~~L~~L~l~~n~l~  314 (606)
T 3t6q_A          285 LTATHLS-E-------------------------------------------------LPSGLVGLSTLKKLVLSANKFE  314 (606)
T ss_dssp             CTTSCCS-C-------------------------------------------------CCSSCCSCTTCCEEECTTCCCS
T ss_pred             ccCCccC-C-------------------------------------------------CChhhcccccCCEEECccCCcC
Confidence            4444433 1                                                 1222222334444444444443


Q ss_pred             CCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEEC
Q 002360          480 DKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL  559 (931)
Q Consensus       480 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L  559 (931)
                      +..|..+.                                                              .+++|+.|++
T Consensus       315 ~~~~~~~~--------------------------------------------------------------~l~~L~~L~l  332 (606)
T 3t6q_A          315 NLCQISAS--------------------------------------------------------------NFPSLTHLSI  332 (606)
T ss_dssp             BGGGGCGG--------------------------------------------------------------GCTTCSEEEC
T ss_pred             cCchhhhh--------------------------------------------------------------ccCcCCEEEC
Confidence            32221111                                                              1344555555


Q ss_pred             cCCccccccC-CcccCCCCCCEEecCCCcceecC--CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360          560 STNHFSEGIP-DCWMNWPRLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL  636 (931)
Q Consensus       560 s~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  636 (931)
                      ++|.+.+.++ ..+..+++|++|++++|.+++..  +..+..+++|++|++++|++.+..|..|..+++|+.|++++|++
T Consensus       333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence            5555543333 23666677777777777776554  56677777777777777777777777777777888888888877


Q ss_pred             cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccccc---CccccccccccccCCCCCCccccc
Q 002360          637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI---PRCINNFSAMATADSSDQSSDILY  713 (931)
Q Consensus       637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~~~~~~~~~~~~~  713 (931)
                      .+..|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..   +..+..+++               
T Consensus       413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~---------------  477 (606)
T 3t6q_A          413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR---------------  477 (606)
T ss_dssp             ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT---------------
T ss_pred             CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC---------------
Confidence            76655553446888888888888888888888888999999999999987632   234444444               


Q ss_pred             cccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCE
Q 002360          714 AFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES  793 (931)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  793 (931)
                                                   |+.|+|++|++++.+|..|+.+++|++|+|++|++++.+|..++.+++| .
T Consensus       478 -----------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~  527 (606)
T 3t6q_A          478 -----------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-Y  527 (606)
T ss_dssp             -----------------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-E
T ss_pred             -----------------------------ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-E
Confidence                                         4889999999999989999999999999999999999999999999999 9


Q ss_pred             EeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          794 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       794 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      ||+++|++++.+|..+..+++|+++++++|+++|.++.
T Consensus       528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  565 (606)
T 3t6q_A          528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN  565 (606)
T ss_dssp             EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred             EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence            99999999999999999999999999999999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=9.7e-53  Score=498.93  Aligned_cols=525  Identities=19%  Similarity=0.197  Sum_probs=385.9

Q ss_pred             CCcEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCC
Q 002360           56 TGHVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIP  135 (931)
Q Consensus        56 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  135 (931)
                      ...+++|+++++            .+.+..+.++.++++|++|+|++|.+... .|..|+++++|++|+|++|.+.+..|
T Consensus        32 ~~~l~~L~Ls~n------------~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~   98 (606)
T 3t6q_A           32 PNSTECLEFSFN------------VLPTIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAE   98 (606)
T ss_dssp             CTTCCEEECTTC------------CCSEECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECT
T ss_pred             CCcCcEEEccCC------------ccCcCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccCh
Confidence            358999999996            66666688999999999999999999876 68899999999999999999998889


Q ss_pred             cccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccC
Q 002360          136 HQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSA  215 (931)
Q Consensus       136 ~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~  215 (931)
                      .+|+++++|++|++++|.+..++..                            .+..+++|++|++++|.+.+++...+.
T Consensus        99 ~~~~~l~~L~~L~L~~n~i~~l~~~----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~  150 (606)
T 3t6q_A           99 TALSGPKALKHLFFIQTGISSIDFI----------------------------PLHNQKTLESLYLGSNHISSIKLPKGF  150 (606)
T ss_dssp             TTTSSCTTCCEEECTTSCCSCGGGS----------------------------CCTTCTTCCEEECCSSCCCCCCCCTTC
T ss_pred             hhhcccccccEeeccccCcccCCcc----------------------------hhccCCcccEEECCCCcccccCccccc
Confidence            9999999999999999987665322                            145788899999999999998766676


Q ss_pred             CCCCCCEEEccCCcCCCCCcccccCCCCCC--EEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCc
Q 002360          216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLK--HLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSI  293 (931)
Q Consensus       216 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L  293 (931)
                      .+++|++|++++|.+.+..+..++.+++|+  +|++++|.+.+..+..+.. .+|+.|++++|...   +.. +..+.++
T Consensus       151 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~-~~~l~~~  225 (606)
T 3t6q_A          151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVI-FKGLKNS  225 (606)
T ss_dssp             CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHH-HHHTTTC
T ss_pred             CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HHH-hhhcccc
Confidence            799999999999999988888899999999  9999999999888777655 68999999998632   222 4445444


Q ss_pred             cEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCE
Q 002360          294 QKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNF  373 (931)
Q Consensus       294 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  373 (931)
                      +...+... .+           ..+...     .+..   ..+..+..   .+|++|++++|.+.+..+..|..+++|++
T Consensus       226 ~l~~l~~~-~~-----------~~~~~~-----~i~~---~~~~~l~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  282 (606)
T 3t6q_A          226 TIQSLWLG-TF-----------EDMDDE-----DISP---AVFEGLCE---MSVESINLQKHYFFNISSNTFHCFSGLQE  282 (606)
T ss_dssp             EEEEEECC-CC-----------TTSCCC-----CCCG---GGGGGGGG---SEEEEEECTTCCCSSCCTTTTTTCTTCSE
T ss_pred             chhheech-hh-----------cccccc-----ccCh---hHhchhhc---CceeEEEeecCccCccCHHHhccccCCCE
Confidence            44333322 11           111111     1111   12222211   37899999999998888888999999999


Q ss_pred             EeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCC
Q 002360          374 LGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCH  453 (931)
Q Consensus       374 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~  453 (931)
                      |++++|.+. .+|..+..+++|++|++++|.+.+..+.                                          
T Consensus       283 L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~------------------------------------------  319 (606)
T 3t6q_A          283 LDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQI------------------------------------------  319 (606)
T ss_dssp             EECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGG------------------------------------------
T ss_pred             EeccCCccC-CCChhhcccccCCEEECccCCcCcCchh------------------------------------------
Confidence            999999988 6788889999999999999988744332                                          


Q ss_pred             CCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEccc
Q 002360          454 LGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSN  533 (931)
Q Consensus       454 l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~  533 (931)
                             .+..+++|+.|++++|.+.+.++...+..                                            
T Consensus       320 -------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~--------------------------------------------  348 (606)
T 3t6q_A          320 -------SASNFPSLTHLSIKGNTKRLELGTGCLEN--------------------------------------------  348 (606)
T ss_dssp             -------CGGGCTTCSEEECCSCSSCCBCCSSTTTT--------------------------------------------
T ss_pred             -------hhhccCcCCEEECCCCCcccccchhhhhc--------------------------------------------
Confidence                   23344566666666666554443332222                                            


Q ss_pred             CCCccccchhhhccCCCCCCccEEECcCCcccccc--CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCc
Q 002360          534 NALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI--PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR  611 (931)
Q Consensus       534 n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  611 (931)
                                       +++|++|++++|++++..  +..+..+++|++|++++|++.+..|..|..+++|++|++++|+
T Consensus       349 -----------------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          349 -----------------LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             -----------------CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             -----------------cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence                             334445555555544433  4455555666666666666665555556666666666666666


Q ss_pred             Cccccch-hhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc---CCcccCCCCCcCEEEccCCcccc
Q 002360          612 LSGVIPT-SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD---FPIQLCRLASLQILDVAYNSLLG  687 (931)
Q Consensus       612 l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~Ls~N~l~~  687 (931)
                      +.+..|. .+..+++|++|++++|.+.+..|..+. .+++|++|++++|++++.   .+..+..+++|+.|++++|++++
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  490 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD-GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS  490 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT-TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHh-CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence            6554433 255666666666666666654454443 566666666666666552   23456778888888888888887


Q ss_pred             ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360          688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL  767 (931)
Q Consensus       688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L  767 (931)
                      ..|..|.+++.|                                            +.|||++|++++.+|..+..++.|
T Consensus       491 ~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~~~~~~l~~l~~L  526 (606)
T 3t6q_A          491 IDQHAFTSLKMM--------------------------------------------NHVDLSHNRLTSSSIEALSHLKGI  526 (606)
T ss_dssp             ECTTTTTTCTTC--------------------------------------------CEEECCSSCCCGGGGGGGTTCCSC
T ss_pred             cChhhhccccCC--------------------------------------------CEEECCCCccCcCChhHhCccccc
Confidence            777777766655                                            788888888888888999999999


Q ss_pred             CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360          768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                       +|+|++|++++.+|..++.+++|+.|++++|++++..+
T Consensus       527 -~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          527 -YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             -EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             -EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence             99999999998888889999999999999999997655

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-52  Score=512.14  Aligned_cols=223  Identities=23%  Similarity=0.259  Sum_probs=177.3

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|++++..+..|..+++|++|++++|.+++     +..+++|+.|++++|+++. +|..   ..+++.|+
T Consensus       337 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~-l~~~---~~~l~~L~  407 (844)
T 3j0a_A          337 LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLVT-LPKI---NLTANLIH  407 (844)
T ss_dssp             CTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCCC-CCCC---CTTCCEEE
T ss_pred             CCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCccc-cccc---ccccceee
Confidence            5677778888887777777778888888888888888873     2237788888888888883 4433   46788899


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCc-ccCCCCCcCEEEccCCcccccc-----CccccccccccccCC
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI-QLCRLASLQILDVAYNSLLGTI-----PRCINNFSAMATADS  704 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~~~~  704 (931)
                      +++|++.+.-.......+++|++|++++|++++..+. .+..+++|+.|+|++|.+++..     |..|.++        
T Consensus       408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l--------  479 (844)
T 3j0a_A          408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL--------  479 (844)
T ss_dssp             CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB--------
T ss_pred             cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc--------
Confidence            9999988432222233689999999999999865443 4566899999999999997433     3334333        


Q ss_pred             CCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcC
Q 002360          705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN  784 (931)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~  784 (931)
                                                          +.|+.|||++|++++.+|..|.++++|++|+|++|++++..|..
T Consensus       480 ------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~  523 (844)
T 3j0a_A          480 ------------------------------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND  523 (844)
T ss_dssp             ------------------------------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC
T ss_pred             ------------------------------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh
Confidence                                                44589999999999999999999999999999999999877777


Q ss_pred             ccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          785 IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       785 l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +.  ++|+.|||++|++++.+|..+.   +|+.+++++|++.|.++.
T Consensus       524 ~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          524 LP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL  565 (844)
T ss_dssp             CC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC
T ss_pred             hh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc
Confidence            66  8999999999999999998764   788999999999998864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.9e-52  Score=493.77  Aligned_cols=537  Identities=22%  Similarity=0.183  Sum_probs=401.5

Q ss_pred             eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360          172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS  251 (931)
Q Consensus       172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  251 (931)
                      +++.+++.++.+|..     -.+++++|++++|.++++++..+.++++|++|++++|.+++..|.+|+++++|++|++++
T Consensus        15 ~~~c~~~~l~~ip~~-----~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           15 TYQCMDQKLSKVPDD-----IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             EEECTTSCCSSCCTT-----SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ceEccCCCcccCCCC-----CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            444444555554432     126777778888888777777788888888888888888777777788888888888888


Q ss_pred             CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCC
Q 002360          252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQ  330 (931)
Q Consensus       252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~  330 (931)
                      |.+++..|..|+++++|++|++++|.+.+..+.. ++.+++|++|++++| .+.+ .+|..++++++|++|++++|.+.+
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCccee
Confidence            8887777888888888888888888876433333 788888888888888 5554 568888888888888888888887


Q ss_pred             cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCC-cCccccccCCCCCCEEEccCCcCCCcc
Q 002360          331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMD-GSIPLSLGQMANLESLDLSNNKLNGTV  409 (931)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~  409 (931)
                      ..+..++.+..-. ..+++|++++|.+.+..+..+... +|++|++++|.+. +..|..++.++.|+.+++..+.+.+..
T Consensus       168 ~~~~~~~~l~~L~-~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~  245 (606)
T 3vq2_A          168 ITVNDLQFLRENP-QVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER  245 (606)
T ss_dssp             ECTTTTHHHHHCT-TCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred             cChhhhhhhhccc-cccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence            7666666551100 114478888888877666655544 7888888888776 456667788888888877655443211


Q ss_pred             c-----hhhhccccccceeccCCceeEEecCCCCCCCccccEEEc-cCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcc
Q 002360          410 S-----EIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLEL-RSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP  483 (931)
Q Consensus       410 ~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L-~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~  483 (931)
                      .     ...+..+.                      ...++.+++ ..+.+.+..|. +..+++|+.|++++|.+.. +|
T Consensus       246 ~l~~~~~~~~~~l~----------------------~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~  301 (606)
T 3vq2_A          246 NLEIFEPSIMEGLC----------------------DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE  301 (606)
T ss_dssp             CCSCCCGGGGTTGG----------------------GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC
T ss_pred             cccccChHHhhhhh----------------------hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh
Confidence            0     00111111                      113445555 44455555555 6666777777777776653 22


Q ss_pred             hhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCc
Q 002360          484 RAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH  563 (931)
Q Consensus       484 ~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~  563 (931)
                        .+..+++|++|++++|.+ +.+|.+                                       .+++|+.|++++|+
T Consensus       302 --~l~~~~~L~~L~l~~n~l-~~lp~~---------------------------------------~l~~L~~L~l~~n~  339 (606)
T 3vq2_A          302 --DVPKHFKWQSLSIIRCQL-KQFPTL---------------------------------------DLPFLKSLTLTMNK  339 (606)
T ss_dssp             --CCCTTCCCSEEEEESCCC-SSCCCC---------------------------------------CCSSCCEEEEESCS
T ss_pred             --hccccccCCEEEcccccC-cccccC---------------------------------------CCCccceeeccCCc
Confidence              222344555555555555 333321                                       26788888998886


Q ss_pred             cccccCCcccCCCCCCEEecCCCcceec--CCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCc
Q 002360          564 FSEGIPDCWMNWPRLRTLNLGNNNFTGS--LPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP  641 (931)
Q Consensus       564 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  641 (931)
                      ..+..  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..|
T Consensus       340 ~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~  416 (606)
T 3vq2_A          340 GSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE  416 (606)
T ss_dssp             SCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTT
T ss_pred             Cccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccC
Confidence            55544  567889999999999998866  47788889999999999999885 55788899999999999999987766


Q ss_pred             hhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc-ccCccccccccccccCCCCCCccccccccCCCc
Q 002360          642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNK  720 (931)
Q Consensus       642 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~  720 (931)
                      ...+..+++|++|++++|.+.+..|..+..+++|+.|++++|++++ .+|..++++++|                     
T Consensus       417 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------------------  475 (606)
T 3vq2_A          417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------------------  475 (606)
T ss_dssp             TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------------------
T ss_pred             hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC---------------------
Confidence            3334479999999999999999899999999999999999999998 478777776665                     


Q ss_pred             cccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCc
Q 002360          721 IVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ  800 (931)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~  800 (931)
                                             +.|+|++|++++.+|..++.+++|++|+|++|++++.+|..++.+++|++||+++|+
T Consensus       476 -----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          476 -----------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             -----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             -----------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence                                   889999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCcccccCCC-CCCeeeCCCccccccCCC
Q 002360          801 LSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       801 l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip~  831 (931)
                      ++ .+|..+..++ +|++|++++|++.|.+|.
T Consensus       533 l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          533 IE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             Cc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99 6788899987 699999999999998774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5.8e-51  Score=483.67  Aligned_cols=519  Identities=18%  Similarity=0.206  Sum_probs=364.8

Q ss_pred             cCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360           93 KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH  172 (931)
Q Consensus        93 ~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~  172 (931)
                      +++++|+|++|.+++. .+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|.+..++.             
T Consensus        32 ~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-------------   97 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP-------------   97 (606)
T ss_dssp             TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT-------------
T ss_pred             CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh-------------
Confidence            5566666666666643 34456666666666666666665555566666666666666655443321             


Q ss_pred             EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCCCCCEEEcCC
Q 002360          173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLTSLKHLDLYS  251 (931)
Q Consensus       173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~  251 (931)
                                     ..+.++++|++|++++|.+.+.++..++++++|++|++++|.+.+ .+|..++++++|++|++++
T Consensus        98 ---------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           98 ---------------GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             ---------------TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             ---------------hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence                           125678888888888999988888888899999999999998876 5688888999999999999


Q ss_pred             CcccccccccccCCCCCC----EEeccCCccccccCccccCCCCCccEEEccCCCCCc-ccCCcccCCCCCCcEEEcCCC
Q 002360          252 NQFNSAVLGWLSKLNDLE----VLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELG-GKIPTSFGKLCKLTSFSMAST  326 (931)
Q Consensus       252 n~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~  326 (931)
                      |++++..+..++.+++|+    +|++++|.+. .++...+... +|++|++++| .+. +..|..+.+++.|+.+++..+
T Consensus       163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~l~~~  239 (606)
T 3vq2_A          163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGN-FNSSNIMKTCLQNLAGLHVHRLILG  239 (606)
T ss_dssp             SCCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESC-CSCHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             CcceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCC-ccchhHHHHHhcccccccccccccc
Confidence            988888777777665554    7888888887 4444434444 7888888888 443 456667777777777766544


Q ss_pred             cCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEec-cCCcCCcCccccccCCCCCCEEEccCCcC
Q 002360          327 KLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGL-SNNQMDGSIPLSLGQMANLESLDLSNNKL  405 (931)
Q Consensus       327 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  405 (931)
                      .+.+..             .+..       +....+..+..+ .++.+++ ..+.+.+.+|. +..+++|++|++++|.+
T Consensus       240 ~~~~~~-------------~l~~-------~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~  297 (606)
T 3vq2_A          240 EFKDER-------------NLEI-------FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI  297 (606)
T ss_dssp             CCTTSC-------------CCSC-------CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC
T ss_pred             ccccCC-------------cccc-------cChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccc
Confidence            332110             0000       000000111111 2333444 33444444443 44555555555555544


Q ss_pred             CCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchh
Q 002360          406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRA  485 (931)
Q Consensus       406 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~  485 (931)
                      . .++                                                  .+..+++|+.|++++|++ +.+|. 
T Consensus       298 ~-~l~--------------------------------------------------~l~~~~~L~~L~l~~n~l-~~lp~-  324 (606)
T 3vq2_A          298 K-YLE--------------------------------------------------DVPKHFKWQSLSIIRCQL-KQFPT-  324 (606)
T ss_dssp             C-CCC--------------------------------------------------CCCTTCCCSEEEEESCCC-SSCCC-
T ss_pred             h-hhh--------------------------------------------------hccccccCCEEEcccccC-ccccc-
Confidence            3 111                                                  112223333333333333 22331 


Q ss_pred             HHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccc
Q 002360          486 FWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFS  565 (931)
Q Consensus       486 ~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  565 (931)
                      +  .+++|++|++++|...+.++                                       +..+++|++|++++|+++
T Consensus       325 ~--~l~~L~~L~l~~n~~~~~~~---------------------------------------~~~l~~L~~L~ls~n~l~  363 (606)
T 3vq2_A          325 L--DLPFLKSLTLTMNKGSISFK---------------------------------------KVALPSLSYLDLSRNALS  363 (606)
T ss_dssp             C--CCSSCCEEEEESCSSCEECC---------------------------------------CCCCTTCCEEECCSSCEE
T ss_pred             C--CCCccceeeccCCcCccchh---------------------------------------hccCCCCCEEECcCCccC
Confidence            1  33444455554443222111                                       123578889999999888


Q ss_pred             cc--cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCcEEecCCCcccccCch
Q 002360          566 EG--IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILEALDVGENELVGSIPT  642 (931)
Q Consensus       566 ~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~  642 (931)
                      +.  .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|.
T Consensus       364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            75  37788889999999999999885 66888899999999999999998877 6888999999999999999987777


Q ss_pred             hHHhhcCcCcEEEccCccccc-cCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcc
Q 002360          643 WIGERFSRLMILILRSNKFHG-DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI  721 (931)
Q Consensus       643 ~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~  721 (931)
                      .+. .+++|++|++++|++++ .+|..+..+++|+.|++++|++++..|..+.++++|                      
T Consensus       443 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------  499 (606)
T 3vq2_A          443 IFL-GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL----------------------  499 (606)
T ss_dssp             TTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred             hhc-CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC----------------------
Confidence            776 79999999999999998 478899999999999999999999888888777666                      


Q ss_pred             ccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC-CCCEEeccCCc
Q 002360          722 VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR-SIESLDFSANQ  800 (931)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~-~L~~LdLs~N~  800 (931)
                                            +.|+|++|++++.+|..++.+++|++|+|++|+++ .+|..+..++ +|++|++++|+
T Consensus       500 ----------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          500 ----------------------QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             ----------------------CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCC
T ss_pred             ----------------------CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCC
Confidence                                  89999999999999999999999999999999999 7888899997 69999999999


Q ss_pred             CcccCc
Q 002360          801 LSGQIP  806 (931)
Q Consensus       801 l~~~~p  806 (931)
                      +.+..+
T Consensus       557 ~~c~c~  562 (606)
T 3vq2_A          557 VACICE  562 (606)
T ss_dssp             CCCSST
T ss_pred             cccCCc
Confidence            997655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-51  Score=485.93  Aligned_cols=527  Identities=17%  Similarity=0.221  Sum_probs=286.3

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCC--------CCCCCCCCCCCCcCc---cceEecCCCCcEEEEEcCCCCCCCchhhhccc
Q 002360           11 SCIESEREALLKLKHDLRDPSH--------RLASWIGDNGDCCKW---GGVLCGNFTGHVLELNLQNPFSPDDNEAYQRS   79 (931)
Q Consensus        11 ~~~~~~~~~ll~~k~~~~d~~~--------~l~~w~~~~~~~c~w---~g~~c~~~~~~v~~L~l~~~~~~~~~~~~~~~   79 (931)
                      .....|++||.++|.++.++..        ..++|. .+.+||.|   .||+|+. .+||++|+|+++            
T Consensus        26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~-~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~------------   91 (636)
T 4eco_A           26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN-FNKELDMWGAQPGVSLNS-NGRVTGLSLEGF------------   91 (636)
T ss_dssp             CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC-CSSCGGGTTCCTTEEECT-TCCEEEEECTTS------------
T ss_pred             hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCC-CCCCcccccCCCCeEEcC-CCCEEEEEecCc------------
Confidence            3445799999999999975532        245898 67899999   9999975 489999999997            


Q ss_pred             ccceeecccccCccCCcEeeCCCCCCC------C-----CCchhhhhcCCCCceeecccccccccCCcccCCC-CCCCEE
Q 002360           80 MLVGKINPSLLELKHLVHLDLSGNDFQ------G-----IQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNL-SNLQYL  147 (931)
Q Consensus        80 ~~~~~l~~~l~~l~~L~~L~Ls~n~~~------~-----~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L-~~L~~L  147 (931)
                      .+.|.+|++++++++|++|+|++|.+.      +     ..+|...  +.+|+ ++++.+.+.+..|..+..+ ..+..+
T Consensus        92 ~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~  168 (636)
T 4eco_A           92 GASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINS  168 (636)
T ss_dssp             CCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHH
T ss_pred             ccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhc
Confidence            899999999999999999999999751      1     0244433  55677 8888887776666554321 111111


Q ss_pred             EccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEc--
Q 002360          148 DLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDL--  225 (931)
Q Consensus       148 ~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--  225 (931)
                      ++....                                                    +..      .....++.+.+  
T Consensus       169 ~l~~~~----------------------------------------------------~~~------~~~~~l~~l~l~~  190 (636)
T 4eco_A          169 DPQQKS----------------------------------------------------IKK------SSRITLKDTQIGQ  190 (636)
T ss_dssp             CTTSCC----------------------------------------------------CCC------CCCCCCCTTTTTC
T ss_pred             Cccccc----------------------------------------------------ccc------ccccchhhhhhcc
Confidence            111000                                                    000      00001111111  


Q ss_pred             cCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccC--CCCCccEEEccCCCC
Q 002360          226 SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLD--NLTSIQKLLLSWNDE  303 (931)
Q Consensus       226 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~L~~n~~  303 (931)
                      ..|++++ +|..++++++|++|++++|.+++.....- ..+      -..+...+.+|.. ++  ++++|++|++++| .
T Consensus       191 ~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~------~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~  260 (636)
T 4eco_A          191 LSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA-WEN------ENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-P  260 (636)
T ss_dssp             CSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS-CSC------TTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-T
T ss_pred             ccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc-ccc------cccchhcccCchh-hhhcccCCCCEEEecCC-c
Confidence            1344444 45555555555555555555544200000 000      0000000014443 44  5555555555555 4


Q ss_pred             CcccCCcccCCCCCCcEEEcCCCc-CCC-cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcC
Q 002360          304 LGGKIPTSFGKLCKLTSFSMASTK-LSQ-DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQM  381 (931)
Q Consensus       304 ~~~~~~~~~~~l~~L~~L~l~~~~-l~~-~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  381 (931)
                      +.+.+|..++++++|+.|++++|. +++ .+|..++.+.                       .+..+++|++|++++|.+
T Consensus       261 l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-----------------------~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-----------------------DAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------------HSGGGGTCCEEECCSSCC
T ss_pred             CCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh-----------------------ccccCCCCCEEECCCCcC
Confidence            445555555555555555555555 554 4555443320                       012235566666666665


Q ss_pred             CcCccc--cccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcC
Q 002360          382 DGSIPL--SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFP  459 (931)
Q Consensus       382 ~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~  459 (931)
                      . .+|.  .++.+++|++|++++|+++|.+|  .+..+++|                                       
T Consensus       318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L---------------------------------------  355 (636)
T 4eco_A          318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKL---------------------------------------  355 (636)
T ss_dssp             S-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEE---------------------------------------
T ss_pred             C-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCC---------------------------------------
Confidence            5 5555  55666666666666665554433  12221111                                       


Q ss_pred             hhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccc
Q 002360          460 LWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGS  539 (931)
Q Consensus       460 ~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~  539 (931)
                               +.|++++|+++ .+|..                                                      
T Consensus       356 ---------~~L~L~~N~l~-~lp~~------------------------------------------------------  371 (636)
T 4eco_A          356 ---------ASLNLAYNQIT-EIPAN------------------------------------------------------  371 (636)
T ss_dssp             ---------SEEECCSSEEE-ECCTT------------------------------------------------------
T ss_pred             ---------CEEECCCCccc-cccHh------------------------------------------------------
Confidence                     11111111111 00000                                                      


Q ss_pred             cchhhhccCCCCCC-ccEEECcCCccccccCCcccCCC--CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc
Q 002360          540 IFHLICQGENFSKN-IEFLKLSTNHFSEGIPDCWMNWP--RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI  616 (931)
Q Consensus       540 ~~~~~~~~~~~~~~-L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  616 (931)
                              +..+++ |+.|++++|+++ .+|..+..++  +|++|++++|++++..|..+....                
T Consensus       372 --------l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~----------------  426 (636)
T 4eco_A          372 --------FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD----------------  426 (636)
T ss_dssp             --------SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC----------------
T ss_pred             --------hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc----------------
Confidence                    001233 455555555554 2444444332  455555555555555554444000                


Q ss_pred             chhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccC--------CCCCcCEEEccCCccccc
Q 002360          617 PTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC--------RLASLQILDVAYNSLLGT  688 (931)
Q Consensus       617 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~--------~l~~L~~L~Ls~N~l~~~  688 (931)
                       .....+++|++|++++|+++ .+|..++..+++|++|++++|+++ .+|....        ++++|+.|+|++|+++ .
T Consensus       427 -~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  502 (636)
T 4eco_A          427 -PTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-K  502 (636)
T ss_dssp             -SSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-B
T ss_pred             -cccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-c
Confidence             00003445555555555554 444444434555555555555555 3332221        2226667777777666 5


Q ss_pred             cCcccc--ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCC
Q 002360          689 IPRCIN--NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQG  766 (931)
Q Consensus       689 ~p~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~  766 (931)
                      +|..+.  .+++|                                            +.|+|++|++++ +|..++.+++
T Consensus       503 lp~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          503 LSDDFRATTLPYL--------------------------------------------VGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             CCGGGSTTTCTTC--------------------------------------------CEEECCSSCCSS-CCCGGGGCSS
T ss_pred             cChhhhhccCCCc--------------------------------------------CEEECCCCCCCC-cChhhhcCCC
Confidence            555443  43333                                            667777777765 6667777777


Q ss_pred             CCEEEc------cCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360          767 LQSLNL------SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       767 L~~L~L------s~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      |++|+|      ++|++.+.+|..++.+++|++|||++|++ +.+|..+.  ++|+.||+++|++...
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCccc
Confidence            777777      56778888888888888999999999988 57787766  7888999999987653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2e-50  Score=494.46  Aligned_cols=525  Identities=22%  Similarity=0.219  Sum_probs=293.6

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccC-CcccCCCCCCCEEEccCCcccccccCccccCCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI-PHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSL  169 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~-p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~  169 (931)
                      -.++|++|||++|.++.. .|..|.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+..+....  +.++++
T Consensus        22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~--~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA--FQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS--SCSCSS
T ss_pred             CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH--ccCCcc
Confidence            346778888888887765 4677788888888888887554444 677788888888888877776553222  456666


Q ss_pred             CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc-cccCCCCCCCEEEccCCcCCCCCcccccCC--CCCCE
Q 002360          170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL-LSSANFSSLTTLDLSGNQFQGQIPSRLGNL--TSLKH  246 (931)
Q Consensus       170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~  246 (931)
                      |++|++++|.++........+.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            666666666655421111124455566666666665555443 345555566666666555555555555544  55555


Q ss_pred             EEcCCCcccccccccccCCCC------CCEEeccCCccccccCccccC--CCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360          247 LDLYSNQFNSAVLGWLSKLND------LEVLSLEDNRLQGDISSLGLD--NLTSIQKLLLSWNDELGGKIPTSFGKLCKL  318 (931)
Q Consensus       247 L~L~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  318 (931)
                      |++++|.+.+..+..++.+++      |+.|++++|.+.+.++.....  ..+.++.+.+..+ ....            
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~-~~~~------------  245 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH-IMGA------------  245 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS-CCBC------------
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc-cccc------------
Confidence            555555555544444444333      555555555444333332111  1123333333322 1000            


Q ss_pred             cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEE
Q 002360          319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL  398 (931)
Q Consensus       319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  398 (931)
                         .+..+.+.+.....+..+   ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..|..+++|++|
T Consensus       246 ---~~~~~~l~~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L  319 (844)
T 3j0a_A          246 ---GFGFHNIKDPDQNTFAGL---ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL  319 (844)
T ss_dssp             ---SSSCSSSTTGGGTTTTTT---TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred             ---cccccccCCCChhhhhcc---ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence               000111111111111111   11345555555555544444444445555555555555444444444444444444


Q ss_pred             EccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCC
Q 002360          399 DLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRI  478 (931)
Q Consensus       399 ~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i  478 (931)
                      ++++|.++                                                 +..|..+..+++|+.|++++|++
T Consensus       320 ~Ls~N~l~-------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~i  350 (844)
T 3j0a_A          320 NLSYNLLG-------------------------------------------------ELYSSNFYGLPKVAYIDLQKNHI  350 (844)
T ss_dssp             EEESCCCS-------------------------------------------------CCCSCSCSSCTTCCEEECCSCCC
T ss_pred             ECCCCCCC-------------------------------------------------ccCHHHhcCCCCCCEEECCCCCC
Confidence            44444443                                                 23334444455555666665555


Q ss_pred             CCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEE
Q 002360          479 SDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLK  558 (931)
Q Consensus       479 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~  558 (931)
                      .+..+..+ ..                                                             +++|+.|+
T Consensus       351 ~~~~~~~~-~~-------------------------------------------------------------l~~L~~L~  368 (844)
T 3j0a_A          351 AIIQDQTF-KF-------------------------------------------------------------LEKLQTLD  368 (844)
T ss_dssp             CCCCSSCS-CS-------------------------------------------------------------CCCCCEEE
T ss_pred             CccChhhh-cC-------------------------------------------------------------CCCCCEEE
Confidence            43332221 11                                                             23444444


Q ss_pred             CcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc-chhhccCCCCcEEecCCCccc
Q 002360          559 LSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI-PTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       559 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      +++|.+++.     ..+++|+.|++++|+++ .+|..   ..+++.|++++|++++.. +..+.++++|++|++++|+++
T Consensus       369 Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          369 LRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             EETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            444444331     11344555555555554 23322   234555566666555432 122345666666666666665


Q ss_pred             ccCchhHHhhcCcCcEEEccCcccc-----ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360          638 GSIPTWIGERFSRLMILILRSNKFH-----GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       638 ~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      +..+......+++|+.|++++|.++     +..+..+..+++|+.|+|++|++++..|..|.++++|             
T Consensus       440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L-------------  506 (844)
T 3j0a_A          440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL-------------  506 (844)
T ss_dssp             CCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC-------------
T ss_pred             ccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh-------------
Confidence            4333222224566777777777765     3345567788889999999999988888777776665             


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                     +.|+|++|++++..|..+.  ++|+.|+|++|++++.+|..|   .+|+
T Consensus       507 -------------------------------~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~  550 (844)
T 3j0a_A          507 -------------------------------RGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLS  550 (844)
T ss_dssp             -------------------------------SEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCC
T ss_pred             -------------------------------heeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcC
Confidence                                           7899999999876666665  899999999999999999876   4789


Q ss_pred             EEeccCCcCcccCc
Q 002360          793 SLDFSANQLSGQIP  806 (931)
Q Consensus       793 ~LdLs~N~l~~~~p  806 (931)
                      .|++++|++.+..+
T Consensus       551 ~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          551 VLDITHNKFICECE  564 (844)
T ss_dssp             EEEEEEECCCCSSS
T ss_pred             EEEecCCCcccccc
Confidence            99999999987654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.9e-49  Score=473.35  Aligned_cols=513  Identities=19%  Similarity=0.209  Sum_probs=301.3

Q ss_pred             CCCCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCC----CCC--cCc------------cceEecCCCCcEEEEEcCCCCC
Q 002360            8 NGTSCIESEREALLKLKHDLRDPSHRLASWIGDN----GDC--CKW------------GGVLCGNFTGHVLELNLQNPFS   69 (931)
Q Consensus         8 ~~~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~----~~~--c~w------------~g~~c~~~~~~v~~L~l~~~~~   69 (931)
                      .++.+..+|++||++||.++.||     +|..++    .+|  |.|            .||+|+. .+||++|+|+++  
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~--  333 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF--  333 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT--
T ss_pred             cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC--
Confidence            34567778999999999999877     787433    355  999            9999985 689999999997  


Q ss_pred             CCchhhhcccccceeecccccCccCCcEeeC-CCCCCCCCCchhhh----------------------------------
Q 002360           70 PDDNEAYQRSMLVGKINPSLLELKHLVHLDL-SGNDFQGIQIPKYL----------------------------------  114 (931)
Q Consensus        70 ~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~L-s~n~~~~~~l~~~l----------------------------------  114 (931)
                                .+.|.+|++++++++|++|+| ++|.+.+. .|-..                                  
T Consensus       334 ----------~L~G~ip~~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          334 ----------GAKGRVPDAIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             ----------CCEEEECGGGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             ----------CCCCcCchHHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence                      899999999999999999999 88866543 11000                                  


Q ss_pred             -----------------hcCCCCceeeccc--ccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEc
Q 002360          115 -----------------ASLVNLRYLNLSQ--ARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYI  175 (931)
Q Consensus       115 -----------------~~l~~L~~L~Ls~--n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l  175 (931)
                                       .....++.+.+..  |.+++ +|..|+++++|++|+|++|                       
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N-----------------------  458 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS-----------------------  458 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC-----------------------
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC-----------------------
Confidence                             0011122222221  34443 4444444444444444444                       


Q ss_pred             cCcccCCC--CchHHHhccCCCCCEEEcCCCCCCCCCccccC--CCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360          176 SFVNLSKA--SDSLLVINSLHSLKELKLSFCELHHFPLLSSA--NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS  251 (931)
Q Consensus       176 ~~n~~~~~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  251 (931)
                         .++..  +..     .      +..+.+...+..|..++  ++++|++|++++|.+.+.+|..|+++++|++|++++
T Consensus       459 ---~Lsg~~i~~~-----~------~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          459 ---PFTYDNIAVD-----W------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             ---CCCGGGBSSS-----C------SCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             ---cCCCCccccc-----c------cccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence               43330  000     0      00000111112233444  667777777777776667777777777777777777


Q ss_pred             Cc-ccc-cccccccCCC-------CCCEEeccCCccccccCc--cccCCCCCccEEEccCCCCCcccCCcccCCCCCCcE
Q 002360          252 NQ-FNS-AVLGWLSKLN-------DLEVLSLEDNRLQGDISS--LGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS  320 (931)
Q Consensus       252 n~-l~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~--~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  320 (931)
                      |+ +++ .+|..++.++       +|++|++++|.+. .+|.  . +..+++|++|++++|                   
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N-------------------  583 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHN-------------------  583 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTS-------------------
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCC-------------------
Confidence            76 665 5555444333       5555555555554 4443  2 444444444444444                   


Q ss_pred             EEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCC-CCEEeccCCcCCcCccccccCCCC--CCE
Q 002360          321 FSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKR-LNFLGLSNNQMDGSIPLSLGQMAN--LES  397 (931)
Q Consensus       321 L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~--L~~  397 (931)
                            .+. .+| .++.+     ++|+.|++++|++. .+|..+..+++ |++|++++|.+. .+|..+..++.  |+.
T Consensus       584 ------~l~-~lp-~~~~L-----~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~  648 (876)
T 4ecn_A          584 ------KVR-HLE-AFGTN-----VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGS  648 (876)
T ss_dssp             ------CCC-BCC-CCCTT-----SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEE
T ss_pred             ------Ccc-cch-hhcCC-----CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCE
Confidence                  444 333 33333     56667777777766 56666777888 889999888887 66766655543  777


Q ss_pred             EEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCC
Q 002360          398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR  477 (931)
Q Consensus       398 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~  477 (931)
                      |++++|++.+.++..                                              +..+..+            
T Consensus       649 L~Ls~N~l~g~ip~l----------------------------------------------~~~l~~~------------  670 (876)
T 4ecn_A          649 VDFSYNKIGSEGRNI----------------------------------------------SCSMDDY------------  670 (876)
T ss_dssp             EECCSSCTTTTSSSC----------------------------------------------SSCTTTC------------
T ss_pred             EECcCCcCCCccccc----------------------------------------------hhhhccc------------
Confidence            777777766543320                                              0000000            


Q ss_pred             CCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE
Q 002360          478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL  557 (931)
Q Consensus       478 i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L  557 (931)
                                                                                              ..++|+.|
T Consensus       671 ------------------------------------------------------------------------~~~~L~~L  678 (876)
T 4ecn_A          671 ------------------------------------------------------------------------KGINASTV  678 (876)
T ss_dssp             ------------------------------------------------------------------------CCCCEEEE
T ss_pred             ------------------------------------------------------------------------cCCCcCEE
Confidence                                                                                    01244555


Q ss_pred             ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360          558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      ++++|+++...+..+..+++|+.|+|++|+++ .+|..+....                +..+.++++|+.|+|++|+++
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~  741 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK----------------DGNYKNTYLLTTIDLRFNKLT  741 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT----------------TSCCTTGGGCCEEECCSSCCC
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc----------------cccccccCCccEEECCCCCCc
Confidence            55555554322222234555556666665555 3333322110                001122334555555555554


Q ss_pred             ccCchhHH-hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360          638 GSIPTWIG-ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS  716 (931)
Q Consensus       638 ~~~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  716 (931)
                       .+|..++ ..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+.                               
T Consensus       742 -~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~-------------------------------  788 (876)
T 4ecn_A          742 -SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD-------------------------------  788 (876)
T ss_dssp             -CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC-------------------------------
T ss_pred             -cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC-------------------------------
Confidence             4554443 235555555555555554 455555566666666666551                               


Q ss_pred             CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360          717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF  796 (931)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  796 (931)
                                                     +++|++.+.+|..++.+++|++|+|++|++ +.+|..+.  ++|+.|||
T Consensus       789 -------------------------------ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL  834 (876)
T 4ecn_A          789 -------------------------------AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI  834 (876)
T ss_dssp             -------------------------------TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred             -------------------------------cccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence                                           345666667777788888888888888888 58887765  58888888


Q ss_pred             cCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360          797 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       797 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      ++|++....+..+.....+..+.+++|++..
T Consensus       835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             CSCTTCEEECGGGHHHHHTTCCEEECCTTSE
T ss_pred             CCCCCCccChHHccccccchheeecCCCccc
Confidence            8888887777777666667777788876653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-47  Score=449.47  Aligned_cols=515  Identities=21%  Similarity=0.213  Sum_probs=377.0

Q ss_pred             eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCC
Q 002360          172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS  251 (931)
Q Consensus       172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  251 (931)
                      .++.++..++.+|..     -.+++++|++++|.++++++..|.++++|++|++++|++++..+..|+++++|++|++++
T Consensus        11 ~~~c~~~~l~~ip~~-----l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~   85 (570)
T 2z63_A           11 TYQCMELNFYKIPDN-----LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (570)
T ss_dssp             EEECCSSCCSSCCSS-----SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEEeCCCCccccCCC-----ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence            344445555555431     135688888888888888888888888899999988888877777888888899999998


Q ss_pred             CcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCC
Q 002360          252 NQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQ  330 (931)
Q Consensus       252 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~  330 (931)
                      |.+++..+..|+.+++|++|++++|.+. .++...++.+++|++|++++| .+.+ .+|..++++++|+.|++++|.+.+
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             CcCCccCHhhhcCccccccccccccccc-cCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccce
Confidence            8888887888888889999999888887 444444888888888888888 6655 568888888888888888888887


Q ss_pred             cchhhhhhcccccccCc----cEEEcCCcccccccccccCCCCCCCEEeccCCcCCc-CccccccCCCCCCEEEccCCcC
Q 002360          331 DISEILGIFSGCVAYEL----ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG-SIPLSLGQMANLESLDLSNNKL  405 (931)
Q Consensus       331 ~~~~~~~~~~~~~~~~L----~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l  405 (931)
                      ..+..++.+     .+|    +.+++++|.+.+..+..+... +|++|++++|.... .++..+..++.++.+.+....+
T Consensus       164 ~~~~~~~~l-----~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~  237 (570)
T 2z63_A          164 IYCTDLRVL-----HQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF  237 (570)
T ss_dssp             ECGGGGHHH-----HTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred             ecHHHccch-----hccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence            777766666     556    778888888877777666655 68888887774432 2444556666666655543322


Q ss_pred             CCccchhhhccccccceeccCCceeEEecCCCCCCCc--cccEEEccCC-CCCCCcChhhhccCCCcEEeCCCCCCCCCc
Q 002360          406 NGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF--QLTVLELRSC-HLGPRFPLWLQLQKKLNDLDISSTRISDKI  482 (931)
Q Consensus       406 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~--~L~~L~L~~~-~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~  482 (931)
                      ...         ..++          ......+..+.  .++.++++++ .+.+..|..+..+++|+.|++++|.+.+ +
T Consensus       238 ~~~---------~~l~----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l  297 (570)
T 2z63_A          238 RNE---------GNLE----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-V  297 (570)
T ss_dssp             CCC---------SSCE----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-C
T ss_pred             cCc---------hhhh----------hcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-h
Confidence            110         0000          00001111111  2334444444 3334444555555555555555544432 1


Q ss_pred             chhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCC
Q 002360          483 PRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN  562 (931)
Q Consensus       483 ~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n  562 (931)
                      |..+                                                              ..+ +|+.|++++|
T Consensus       298 ~~~~--------------------------------------------------------------~~~-~L~~L~l~~n  314 (570)
T 2z63_A          298 KDFS--------------------------------------------------------------YNF-GWQHLELVNC  314 (570)
T ss_dssp             CBCC--------------------------------------------------------------SCC-CCSEEEEESC
T ss_pred             hhhh--------------------------------------------------------------ccC-CccEEeeccC
Confidence            2111                                                              123 5777777777


Q ss_pred             ccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcccc--chhhccCCCCcEEecCCCcccccC
Q 002360          563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVI--PTSFKNFSILEALDVGENELVGSI  640 (931)
Q Consensus       563 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~  640 (931)
                      .+.. +|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  |..+.++++|++|++++|++.+ +
T Consensus       315 ~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~  388 (570)
T 2z63_A          315 KFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M  388 (570)
T ss_dssp             BCSS-CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-E
T ss_pred             cccc-cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-c
Confidence            7763 443  3567788888888887765554  56788888888888887654  6778888889999999998874 4


Q ss_pred             chhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCC
Q 002360          641 PTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDN  719 (931)
Q Consensus       641 p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  719 (931)
                      |..+. .+++|++|++++|.+.+..| ..+..+++|+.|++++|++.+..|..+.++++|                    
T Consensus       389 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------  447 (570)
T 2z63_A          389 SSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------  447 (570)
T ss_dssp             EEEEE-TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------
T ss_pred             ccccc-ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC--------------------
Confidence            44444 78899999999999887766 567889999999999999998888877776665                    


Q ss_pred             ccccceeEEeecchhhhhhhccceeEEEcccCccc-ccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccC
Q 002360          720 KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA  798 (931)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~  798 (931)
                                              +.|++++|+++ +.+|..++.+++|++|+|++|++++..|..|+.+++|++|++++
T Consensus       448 ------------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          448 ------------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             ------------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ------------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence                                    88999999998 67899999999999999999999998899999999999999999


Q ss_pred             CcCcccCcccccCCCCCCeeeCCCccccccCCCCC
Q 002360          799 NQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST  833 (931)
Q Consensus       799 N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~  833 (931)
                      |++++..|..+..+++|+.|++++|+++|.+|...
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            99999988899999999999999999999998753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.4e-47  Score=444.96  Aligned_cols=505  Identities=21%  Similarity=0.237  Sum_probs=321.2

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      .+|..+  .+++++|++++|.+++. .+..|..+++|++|+|++|.+++..|.+|+++++|++|++++|.+..++..   
T Consensus        21 ~ip~~l--~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~---   94 (570)
T 2z63_A           21 KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG---   94 (570)
T ss_dssp             SCCSSS--CSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT---
T ss_pred             ccCCCc--cccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHh---
Confidence            345443  24677888888887754 355677788888888888877766667777788888888877776555432   


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLT  242 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~  242 (931)
                                               .+..+++|++|++++|.+..+++..++++++|++|++++|.+.+ .+|..+++++
T Consensus        95 -------------------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  149 (570)
T 2z63_A           95 -------------------------AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  149 (570)
T ss_dssp             -------------------------TTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             -------------------------hhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccC
Confidence                                     24456666666666666666666567777777777777777765 3577777777


Q ss_pred             CCCEEEcCCCcccccccccccCCCCC----CEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360          243 SLKHLDLYSNQFNSAVLGWLSKLNDL----EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKL  318 (931)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  318 (931)
                      +|++|++++|.+++..+..++.+++|    +.|++++|.+.+..+.. +... +|++|++++|..-...++..+..++.+
T Consensus       150 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l  227 (570)
T 2z63_A          150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGL  227 (570)
T ss_dssp             TCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTC
T ss_pred             CCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH-hccC-cceeEecccccccccchhhhhcCcccc
Confidence            77777777777777666667666666    67777777776443332 4444 677777777633333445555666666


Q ss_pred             cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC--CCCEEeccCC-cCCcCccccccCCCCC
Q 002360          319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK--RLNFLGLSNN-QMDGSIPLSLGQMANL  395 (931)
Q Consensus       319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~n-~l~~~~p~~~~~l~~L  395 (931)
                      +...+....+...             ..++.  +.        ...+..++  .++.++++++ .+.+..|..+..+++|
T Consensus       228 ~~~~l~~~~~~~~-------------~~l~~--~~--------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L  284 (570)
T 2z63_A          228 EVHRLVLGEFRNE-------------GNLEK--FD--------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV  284 (570)
T ss_dssp             EEEEEEEEECCCC-------------SSCEE--CC--------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred             ceeeeccccccCc-------------hhhhh--cc--------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence            6554432221110             00110  00        01111111  2344455544 4444555555666666


Q ss_pred             CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360          396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS  475 (931)
Q Consensus       396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~  475 (931)
                      ++|++++|.+.+ ++.                                                 ++..+ +|+.|++++
T Consensus       285 ~~L~l~~~~l~~-l~~-------------------------------------------------~~~~~-~L~~L~l~~  313 (570)
T 2z63_A          285 SSFSLVSVTIER-VKD-------------------------------------------------FSYNF-GWQHLELVN  313 (570)
T ss_dssp             SEEEEESCEECS-CCB-------------------------------------------------CCSCC-CCSEEEEES
T ss_pred             cEEEecCccchh-hhh-------------------------------------------------hhccC-CccEEeecc
Confidence            666666665541 221                                                 11112 333333333


Q ss_pred             CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360          476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE  555 (931)
Q Consensus       476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~  555 (931)
                      |.+. .+|..   .                                                             +++|+
T Consensus       314 n~~~-~l~~~---~-------------------------------------------------------------l~~L~  328 (570)
T 2z63_A          314 CKFG-QFPTL---K-------------------------------------------------------------LKSLK  328 (570)
T ss_dssp             CBCS-SCCBC---B-------------------------------------------------------------CSSCC
T ss_pred             Cccc-ccCcc---c-------------------------------------------------------------ccccC
Confidence            3332 11110   1                                                             12333


Q ss_pred             EEECcCCccccccCCcccCCCCCCEEecCCCcceecC--CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360          556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL--PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE  633 (931)
Q Consensus       556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  633 (931)
                      .|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|.+.+..+. +..+++|+.|++++
T Consensus       329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~  405 (570)
T 2z63_A          329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQH  405 (570)
T ss_dssp             EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTT
T ss_pred             EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccC
Confidence            344444433332222  34455555555555555332  44555666667777777666654443 66777777777777


Q ss_pred             CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-cccCccccccccccccCCCCCCcccc
Q 002360          634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-GTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      |.+.+..|...+..+++|++|++++|.+.+..|..+..+++|+.|++++|+++ +.+|..+..+++|             
T Consensus       406 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L-------------  472 (570)
T 2z63_A          406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------  472 (570)
T ss_dssp             SEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred             CccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------------
Confidence            77775555333346788888888888888778888888888999999999887 5778777766655             


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                     +.|+|++|++++..|..+..+++|++|++++|++++.+|..|+.+++|+
T Consensus       473 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  521 (570)
T 2z63_A          473 -------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ  521 (570)
T ss_dssp             -------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -------------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence                                           7899999999988899999999999999999999988888899999999


Q ss_pred             EEeccCCcCcccCcc
Q 002360          793 SLDFSANQLSGQIPQ  807 (931)
Q Consensus       793 ~LdLs~N~l~~~~p~  807 (931)
                      .|++++|++++..|.
T Consensus       522 ~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          522 KIWLHTNPWDCSCPR  536 (570)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEecCCcccCCCcc
Confidence            999999999988774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.9e-46  Score=437.91  Aligned_cols=201  Identities=22%  Similarity=0.294  Sum_probs=163.5

Q ss_pred             CCCCCEEecCCCcceecCCCcc-cCCCCCCEEEccCCcCccccch---hhccCCCCcEEecCCCcccccCch--hHHhhc
Q 002360          575 WPRLRTLNLGNNNFTGSLPMSI-GTLTSLRSLNLRNNRLSGVIPT---SFKNFSILEALDVGENELVGSIPT--WIGERF  648 (931)
Q Consensus       575 l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~--~~~~~l  648 (931)
                      .++|+.|++++|++. .+|..+ ..+++|++|++++|++++..|.   .+..+++|++|++++|++++ +|.  ..+..+
T Consensus       309 ~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l  386 (549)
T 2z81_A          309 LEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTL  386 (549)
T ss_dssp             STTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGC
T ss_pred             cccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcC
Confidence            457888888888876 566555 4688888888888888876643   36778888888888888874 432  233478


Q ss_pred             CcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEE
Q 002360          649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV  728 (931)
Q Consensus       649 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  728 (931)
                      ++|++|++++|+++ .+|..+..+++|+.|++++|+++ .+|..+                                   
T Consensus       387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~-----------------------------------  429 (549)
T 2z81_A          387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI-----------------------------------  429 (549)
T ss_dssp             TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-----------------------------------
T ss_pred             CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-----------------------------------
Confidence            89999999999888 67888888999999999999987 333322                                   


Q ss_pred             eecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc
Q 002360          729 MKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS  808 (931)
Q Consensus       729 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~  808 (931)
                                 .+.|+.|||++|++++.+    ..+++|++|+|++|+++ .+|. .+.+++|++|||++|++++.+|..
T Consensus       430 -----------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~  492 (549)
T 2z81_A          430 -----------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGI  492 (549)
T ss_dssp             -----------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTG
T ss_pred             -----------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHH
Confidence                       123589999999998753    57899999999999999 7887 578999999999999999999999


Q ss_pred             ccCCCCCCeeeCCCccccccCCC
Q 002360          809 MSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       809 l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +..+++|+.|++++|+++|.+|.
T Consensus       493 ~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          493 FDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GGGCTTCCEEECCSSCBCCCHHH
T ss_pred             HhcCcccCEEEecCCCccCCCcc
Confidence            99999999999999999999884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.6e-45  Score=427.73  Aligned_cols=493  Identities=18%  Similarity=0.209  Sum_probs=306.6

Q ss_pred             cEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEc
Q 002360           96 VHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYI  175 (931)
Q Consensus        96 ~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l  175 (931)
                      .+.|.+++.++  .+|..+.  ++|++|+|++|.+++..|.+|.++++|++|++++|.+..                   
T Consensus         8 ~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-------------------   64 (549)
T 2z81_A            8 GVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-------------------   64 (549)
T ss_dssp             SEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-------------------
T ss_pred             ceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-------------------
Confidence            34566666666  3455443  567777777777776666666666666666666555433                   


Q ss_pred             cCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCccc
Q 002360          176 SFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFN  255 (931)
Q Consensus       176 ~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  255 (931)
                                                       .++..+.++++|++|++++|++.+..|..|+.+++|++|++++|.++
T Consensus        65 ---------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  111 (549)
T 2z81_A           65 ---------------------------------IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ  111 (549)
T ss_dssp             ---------------------------------ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCS
T ss_pred             ---------------------------------cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCccc
Confidence                                             23333444455555555555555444444555555555555555554


Q ss_pred             cc-ccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchh
Q 002360          256 SA-VLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE  334 (931)
Q Consensus       256 ~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  334 (931)
                      +. .|..++.+++|++|++++|.+.+.++...+..+++|++|++++| .+.+..|..+..+++|+.|+++.|.+......
T Consensus       112 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~  190 (549)
T 2z81_A          112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEI  190 (549)
T ss_dssp             SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEECSBSTTHHHH
T ss_pred             ccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEecccCcccccchh
Confidence            42 34455566666666666665444555444666666666666666 66666666666677777777766665432222


Q ss_pred             hhhhcccccccCccEEEcCCccccccc--c-cccCCCCCCCEEeccCCcCCcCccc----cccCCCCCCEEEccCCcCCC
Q 002360          335 ILGIFSGCVAYELESLYLRGCQIFGHL--T-NQLGQFKRLNFLGLSNNQMDGSIPL----SLGQMANLESLDLSNNKLNG  407 (931)
Q Consensus       335 ~~~~~~~~~~~~L~~L~L~~n~l~~~~--~-~~l~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~  407 (931)
                      .+..+     ++|++|++++|++.+..  + .....+++|+.|++++|.+.+..+.    .+..+++|+.+++++|.+.+
T Consensus       191 ~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~  265 (549)
T 2z81_A          191 FADIL-----SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG  265 (549)
T ss_dssp             HHHST-----TTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred             hHhhc-----ccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence            22233     66777777777766532  1 1123456666777766666543332    23445666666666665543


Q ss_pred             ccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHH
Q 002360          408 TVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFW  487 (931)
Q Consensus       408 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  487 (931)
                      ....      +.                                     .....+..+++|+.|++.++.+.....   +
T Consensus       266 ~~~~------~~-------------------------------------~~~~~~~~l~~L~~L~l~~~~i~~~~~---~  299 (549)
T 2z81_A          266 LGDF------NP-------------------------------------SESDVVSELGKVETVTIRRLHIPQFYL---F  299 (549)
T ss_dssp             CSCC------CC-------------------------------------CTTTCCCCCTTCCEEEEESCBCSCGGG---S
T ss_pred             cccc------cc-------------------------------------cchhhhhhhcccccccccccccchhhh---c
Confidence            2100      00                                     000111223444445444444321100   0


Q ss_pred             hccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccc
Q 002360          488 NSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEG  567 (931)
Q Consensus       488 ~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  567 (931)
                      .                                                  .++...    ...++|+.|++++|+++. 
T Consensus       300 ~--------------------------------------------------~l~~~~----~~~~~L~~L~l~~n~l~~-  324 (549)
T 2z81_A          300 Y--------------------------------------------------DLSTVY----SLLEKVKRITVENSKVFL-  324 (549)
T ss_dssp             C--------------------------------------------------CCCHHH----HHSTTCCEEEEESSCCCC-
T ss_pred             c--------------------------------------------------cchhhh----hhcccceEEEeccCcccc-
Confidence            0                                                  000000    013467777777777764 


Q ss_pred             cCCcc-cCCCCCCEEecCCCcceecCC---CcccCCCCCCEEEccCCcCccccc--hhhccCCCCcEEecCCCcccccCc
Q 002360          568 IPDCW-MNWPRLRTLNLGNNNFTGSLP---MSIGTLTSLRSLNLRNNRLSGVIP--TSFKNFSILEALDVGENELVGSIP  641 (931)
Q Consensus       568 ~~~~~-~~l~~L~~L~Ls~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p  641 (931)
                      +|..+ ..+++|++|++++|++++.+|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|+++ .+|
T Consensus       325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp  403 (549)
T 2z81_A          325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMP  403 (549)
T ss_dssp             CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCC
T ss_pred             CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCC
Confidence            44444 467788888888888876553   346677888888888888876543  45778888888888888887 677


Q ss_pred             hhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcc
Q 002360          642 TWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKI  721 (931)
Q Consensus       642 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~  721 (931)
                      ..+. .+++|++|++++|++++ +|..+  .++|+.|++++|++++.+    .++                         
T Consensus       404 ~~~~-~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l-------------------------  450 (549)
T 2z81_A          404 DSCQ-WPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFL-------------------------  450 (549)
T ss_dssp             SCCC-CCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCC-------------------------
T ss_pred             hhhc-ccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccC-------------------------
Confidence            7665 67888888888888873 44433  368999999999988643    222                         


Q ss_pred             ccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcC
Q 002360          722 VEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL  801 (931)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l  801 (931)
                                         +.|+.|||++|+++ .+|. ...+++|++|+|++|++++.+|..++.+++|+.|++++|++
T Consensus       451 -------------------~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          451 -------------------PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             -------------------TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             -------------------ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCc
Confidence                               33488999999998 6776 57799999999999999999998899999999999999999


Q ss_pred             cccCc
Q 002360          802 SGQIP  806 (931)
Q Consensus       802 ~~~~p  806 (931)
                      ++..|
T Consensus       510 ~~~~~  514 (549)
T 2z81_A          510 DCSCP  514 (549)
T ss_dssp             CCCHH
T ss_pred             cCCCc
Confidence            98877

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-44  Score=430.23  Aligned_cols=528  Identities=23%  Similarity=0.237  Sum_probs=339.1

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      .+|..+  -+.+++|||++|.|+.+ .+..|.++++|++|+|++|.+++..|.+|.+|++|++|+|++|.++.++...  
T Consensus        45 ~vP~~l--p~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~--  119 (635)
T 4g8a_A           45 KIPDNL--PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA--  119 (635)
T ss_dssp             SCCSSS--CTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGG--
T ss_pred             ccCCCC--CcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHH--
Confidence            355544  24788999999999865 3568999999999999999998777788999999999999988877666533  


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC-CCcccccCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG-QIPSRLGNLT  242 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~  242 (931)
                                                |.++++|++|++++|+++++++..|+++++|++|++++|.+.+ ..|..++.++
T Consensus       120 --------------------------f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A          120 --------------------------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             --------------------------GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             --------------------------hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence                                      4456666666666666666666667777777777777777764 3466677777


Q ss_pred             CCCEEEcCCCcccccccccccCCCC----CCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCC
Q 002360          243 SLKHLDLYSNQFNSAVLGWLSKLND----LEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKL  318 (931)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L  318 (931)
                      +|++|++++|++++..+..+..+.+    ...++++.|.+.. ++.. ......++.+++..|.......+..+..+..+
T Consensus       174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l  251 (635)
T 4g8a_A          174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL  251 (635)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTC
T ss_pred             hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc-cCcc-cccchhhhhhhhhcccccccccchhhcCCccc
Confidence            7777777777777776666654433    3356677776653 3333 23334455666666522222233344455555


Q ss_pred             cEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCc---CccccccCCCCC
Q 002360          319 TSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG---SIPLSLGQMANL  395 (931)
Q Consensus       319 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~p~~~~~l~~L  395 (931)
                      +...+..+.....                       ..+.......+..+..+...++..+....   ..+..+..+.++
T Consensus       252 ~~~~l~~~~~~~~-----------------------~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          252 EVHRLVLGEFRNE-----------------------GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEEEEEECCTTS-----------------------CCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             ccccccccccccc-----------------------cccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence            5444322211100                       00111111122233334444433332221   122234556667


Q ss_pred             CEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCC
Q 002360          396 ESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISS  475 (931)
Q Consensus       396 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~  475 (931)
                      +.+++.++.+....+   +.                                                ....++.|++++
T Consensus       309 ~~l~~~~~~~~~~~~---~~------------------------------------------------~~~~L~~L~l~~  337 (635)
T 4g8a_A          309 SSFSLVSVTIERVKD---FS------------------------------------------------YNFGWQHLELVN  337 (635)
T ss_dssp             SEEEEESCEEEECGG---GG------------------------------------------------SCCCCSEEEEES
T ss_pred             ccccccccccccccc---cc------------------------------------------------cchhhhhhhccc
Confidence            777776666542111   11                                                112233333333


Q ss_pred             CCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCcc
Q 002360          476 TRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIE  555 (931)
Q Consensus       476 n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~  555 (931)
                      |.+....+.                                                                 ....|+
T Consensus       338 ~~~~~~~~~-----------------------------------------------------------------~l~~L~  352 (635)
T 4g8a_A          338 CKFGQFPTL-----------------------------------------------------------------KLKSLK  352 (635)
T ss_dssp             CEESSCCCC-----------------------------------------------------------------BCTTCC
T ss_pred             ccccCcCcc-----------------------------------------------------------------cchhhh
Confidence            322211110                                                                 012344


Q ss_pred             EEECcCCccccccCCcccCCCCCCEEecCCCcce--ecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360          556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT--GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE  633 (931)
Q Consensus       556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  633 (931)
                      .+++..|.+....  ....+++|+.|++++|.+.  +..+..+..+.+|+++++..|.... .+..+..+++|+.+++++
T Consensus       353 ~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~  429 (635)
T 4g8a_A          353 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH  429 (635)
T ss_dssp             EEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTT
T ss_pred             hcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhh
Confidence            4444444433221  1234556666666666553  2334445556667777777666653 344566677777777777


Q ss_pred             CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-cccCccccccccccccCCCCCCcccc
Q 002360          634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-GTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      |......+...+..+++++.++++.|.+.+..+..+..+++|+.|++++|++. +..|..|..+++|             
T Consensus       430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------  496 (635)
T 4g8a_A          430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------  496 (635)
T ss_dssp             SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc-------------
Confidence            77665555555557788888888888888888888888888999999888754 4566666665555             


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                     +.|||++|++++.+|..|+++++|++|+|++|+|++..|..|+.+++|+
T Consensus       497 -------------------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  545 (635)
T 4g8a_A          497 -------------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  545 (635)
T ss_dssp             -------------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred             -------------------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence                                           7899999999988899999999999999999999988888999999999


Q ss_pred             EEeccCCcCcccCcccccCC-CCCCeeeCCCccccccCC
Q 002360          793 SLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       793 ~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip  830 (931)
                      +|||++|++++.+|..+..+ ++|++|++++|+++|.+.
T Consensus       546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            99999999999999999988 689999999999998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.9e-44  Score=417.60  Aligned_cols=469  Identities=19%  Similarity=0.216  Sum_probs=272.8

Q ss_pred             CEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCC
Q 002360          197 KELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN  276 (931)
Q Consensus       197 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  276 (931)
                      ++|++++|.++.+|... .  ++|++|++++|.+.+..|..|..+++|++|++++|++++..|..|+.+++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~-~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDL-S--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSC-C--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcccccccc-c--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57899999999877533 3  89999999999999887788999999999999999998888889999999999999999


Q ss_pred             ccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCc
Q 002360          277 RLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC  355 (931)
Q Consensus       277 ~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n  355 (931)
                      .++ .+|..   .+++|++|++++| .+.+ .+|..++++++|++|++++|.+.+.   .+..+     ++|        
T Consensus        80 ~l~-~lp~~---~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L--------  138 (520)
T 2z7x_B           80 KLV-KISCH---PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPI-----AHL--------  138 (520)
T ss_dssp             CCC-EEECC---CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGG-----TTS--------
T ss_pred             cee-ecCcc---ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCcccchh---hcccc-----ccc--------
Confidence            887 56654   7788888888888 6655 4667777777777777777666542   12222     333        


Q ss_pred             ccccccccccCCCCCCCEEeccCCcC--CcCccccccCCC-CCCEEEccCCcCCCccchhhhccccccceeccCCceeEE
Q 002360          356 QIFGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMA-NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIF  432 (931)
Q Consensus       356 ~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~  432 (931)
                                    +|++|++++|.+  .+..|..+..+. +...+++++|++.+.++...+..+++|+.++++.|....
T Consensus       139 --------------~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  204 (520)
T 2z7x_B          139 --------------NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN  204 (520)
T ss_dssp             --------------CEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTT
T ss_pred             --------------eeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccccccc
Confidence                          114444444444  333443333332 122345555555544444444444444444443332000


Q ss_pred             ecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHh--ccccceEEeccCcccccCCCCC
Q 002360          433 KINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN--SIFQYYYLNVSGNQIYGGVPKF  510 (931)
Q Consensus       433 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~p~~  510 (931)
                             .+.          .+.+.+| .+..+++|+.|++++|.+++..+..+..  ..++|++|++++|.+.|.+|..
T Consensus       205 -------~~~----------~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~  266 (520)
T 2z7x_B          205 -------KCS----------YFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFR  266 (520)
T ss_dssp             -------TTH----------HHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCC
T ss_pred             -------ccc----------eeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccc
Confidence                   000          0111112 3445566666666666555433222211  1124444555544444444321


Q ss_pred             CCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccCC---CCCCEEecCCC
Q 002360          511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMNW---PRLRTLNLGNN  586 (931)
Q Consensus       511 ~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l---~~L~~L~Ls~n  586 (931)
                      ...                                ...+.+++|+.+++++|.+  .+| ..+..+   .+|+.|++++|
T Consensus       267 ~~~--------------------------------~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n  312 (520)
T 2z7x_B          267 DFD--------------------------------YSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT  312 (520)
T ss_dssp             CCC--------------------------------CCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred             hhh--------------------------------cccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence            100                                0001234455555555554  122 222221   34555555555


Q ss_pred             cceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccc--c
Q 002360          587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG--D  664 (931)
Q Consensus       587 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~--~  664 (931)
                      .+.+..  .+..+++|++|++++|++++..|..+..                         +++|++|++++|++++  .
T Consensus       313 ~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~l~~  365 (520)
T 2z7x_B          313 RMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGH-------------------------LTELETLILQMNQLKELSK  365 (520)
T ss_dssp             CCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCC-------------------------CSSCCEEECCSSCCCBHHH
T ss_pred             cccccc--chhhCCcccEEEeECCccChhhhhhhcc-------------------------CCCCCEEEccCCccCcccc
Confidence            443211  0133444444444444444444444444                         4455555555555543  2


Q ss_pred             CCcccCCCCCcCEEEccCCccccccCcc-ccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccce
Q 002360          665 FPIQLCRLASLQILDVAYNSLLGTIPRC-INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLV  743 (931)
Q Consensus       665 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L  743 (931)
                      +|..+..+++|+.|++++|++++.+|.. +..++.                                            |
T Consensus       366 ~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~--------------------------------------------L  401 (520)
T 2z7x_B          366 IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS--------------------------------------------L  401 (520)
T ss_dssp             HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT--------------------------------------------C
T ss_pred             chHHHhhCCCCCEEECCCCcCCcccccchhccCcc--------------------------------------------C
Confidence            3444555666666666666666544432 333222                                            3


Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCC
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSN  822 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~  822 (931)
                      +.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++||+++|+++ .+|.. +..+++|++|++++
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence            6666666666666665554  67888888888887 77777778888888888888888 45554 78888888888888


Q ss_pred             ccccccCC
Q 002360          823 NNLNGEIP  830 (931)
Q Consensus       823 N~l~g~ip  830 (931)
                      |+++|.++
T Consensus       478 N~~~c~c~  485 (520)
T 2z7x_B          478 NPWDCSCP  485 (520)
T ss_dssp             SCBCCCHH
T ss_pred             CCCcccCC
Confidence            88888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-43  Score=412.03  Aligned_cols=448  Identities=20%  Similarity=0.231  Sum_probs=268.4

Q ss_pred             eecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           84 KINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      .+|..+.  ++|++|+|++|.+++. .|..|..+++|++|+|++|.+++..|.+|+++++|++|+|++|.++.+|..   
T Consensus        14 ~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---   87 (520)
T 2z7x_B           14 HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---   87 (520)
T ss_dssp             SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---
T ss_pred             ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---
Confidence            3555444  5666666666666654 345666666666666666666655566666666666666666655544332   


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCC-CccccCCCCCCCEEEccCCcCCCCCcccccCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHF-PLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLT  242 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  242 (931)
                                                  .+++|++|++++|.+.++ .|..++++++|++|++++|.+.+   ..+..++
T Consensus        88 ----------------------------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~  136 (520)
T 2z7x_B           88 ----------------------------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIA  136 (520)
T ss_dssp             ----------------------------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGT
T ss_pred             ----------------------------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccc
Confidence                                        345555555555555553 23456666666666666666653   2345555


Q ss_pred             CC--CEEEcCCCcc--cccccccccCCC-CCCEEeccCCccccccCccccCCCCCccEEEccCCCC-------CcccCCc
Q 002360          243 SL--KHLDLYSNQF--NSAVLGWLSKLN-DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDE-------LGGKIPT  310 (931)
Q Consensus       243 ~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~-------~~~~~~~  310 (931)
                      +|  ++|++++|.+  .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++| .       +.+.++ 
T Consensus       137 ~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~-  214 (520)
T 2z7x_B          137 HLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCV-LEDNKCSYFLSILA-  214 (520)
T ss_dssp             TSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEEC-CSTTTTHHHHHHHH-
T ss_pred             cceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeecccccc-ccccccceeecchh-
Confidence            55  6666666666  555555555443 23345666666666666665667777777777766 2       222222 


Q ss_pred             ccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCccccccccccc---CCCCCCCEEeccCCcCCcCccc
Q 002360          311 SFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQL---GQFKRLNFLGLSNNQMDGSIPL  387 (931)
Q Consensus       311 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~p~  387 (931)
                      .+..+++                             |+.|++++|.+.+..+..+   ...++|++|++++|.+.+.+|.
T Consensus       215 ~l~~l~~-----------------------------L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~  265 (520)
T 2z7x_B          215 KLQTNPK-----------------------------LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDF  265 (520)
T ss_dssp             GGGGCTT-----------------------------CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCC
T ss_pred             hhccccc-----------------------------hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCcccc
Confidence            3444444                             4444444444433211111   0135677777777777777776


Q ss_pred             cc-----cCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhh
Q 002360          388 SL-----GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWL  462 (931)
Q Consensus       388 ~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  462 (931)
                      .+     +.+++|+.+++++|.+  .+|...+..+                                             
T Consensus       266 ~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---------------------------------------------  298 (520)
T 2z7x_B          266 RDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---------------------------------------------  298 (520)
T ss_dssp             CCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---------------------------------------------
T ss_pred             chhhcccccCceeEeccccccce--ecchhhhhcc---------------------------------------------
Confidence            66     7778888888887776  3332111100                                             


Q ss_pred             hccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccch
Q 002360          463 QLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFH  542 (931)
Q Consensus       463 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~  542 (931)
                      ....                                                                            
T Consensus       299 ~~~~----------------------------------------------------------------------------  302 (520)
T 2z7x_B          299 FSNM----------------------------------------------------------------------------  302 (520)
T ss_dssp             HHTC----------------------------------------------------------------------------
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            0001                                                                            


Q ss_pred             hhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhh
Q 002360          543 LICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSF  620 (931)
Q Consensus       543 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~  620 (931)
                                +|+.|++++|.+.+..  .+..+++|++|++++|++++..|..+..+++|++|++++|++++  .+|..+
T Consensus       303 ----------~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~  370 (520)
T 2z7x_B          303 ----------NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT  370 (520)
T ss_dssp             ----------CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred             ----------ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH
Confidence                      2333333333332211  11345666677777777766666677777777777777777775  345566


Q ss_pred             ccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccc
Q 002360          621 KNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA  700 (931)
Q Consensus       621 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  700 (931)
                      ..+++|++|++++|++.+.+|...                        +..+++|+.|++++|++++.+|..+.  +   
T Consensus       371 ~~l~~L~~L~Ls~N~l~~~l~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~l~--~---  421 (520)
T 2z7x_B          371 TQMKSLQQLDISQNSVSYDEKKGD------------------------CSWTKSLLSLNMSSNILTDTIFRCLP--P---  421 (520)
T ss_dssp             TTCTTCCEEECCSSCCBCCGGGCS------------------------CCCCTTCCEEECCSSCCCGGGGGSCC--T---
T ss_pred             hhCCCCCEEECCCCcCCcccccch------------------------hccCccCCEEECcCCCCCcchhhhhc--c---
Confidence            666777777777776664455432                        33455566666666666555444331  1   


Q ss_pred             ccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc
Q 002360          701 TADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR  780 (931)
Q Consensus       701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  780 (931)
                                                               .|+.|||++|+++ .+|..+..+++|++|+|++|+++ .
T Consensus       422 -----------------------------------------~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~  458 (520)
T 2z7x_B          422 -----------------------------------------RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S  458 (520)
T ss_dssp             -----------------------------------------TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred             -----------------------------------------cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-c
Confidence                                                     2367777777777 77887888999999999999999 5


Q ss_pred             CCcC-ccCcCCCCEEeccCCcCcccCc
Q 002360          781 IPDN-IGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       781 ip~~-l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                      +|.. +..+++|++|++++|++++..+
T Consensus       459 l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          459 VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCHHHhccCCcccEEECcCCCCcccCC
Confidence            6665 8899999999999999998654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3e-43  Score=421.41  Aligned_cols=439  Identities=20%  Similarity=0.286  Sum_probs=291.1

Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCEEEc-CCCcccccccccccCC-CCCCEEec---------------cCCcccc
Q 002360          218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL-YSNQFNSAVLGWLSKL-NDLEVLSL---------------EDNRLQG  280 (931)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~~~~~l~~l-~~L~~L~L---------------~~n~l~~  280 (931)
                      .+++.|+|+++.+.|.+|++++++++|++|+| ++|.+.+..+-..... ..+....+               ....+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            45777777777777777777777777777777 6666655422110000 00000000               0000000


Q ss_pred             ----------ccCccccCCCCCccEEEccC--CCCCcccCCcccCCCCCCcEEEcCCCcCCC-----------------c
Q 002360          281 ----------DISSLGLDNLTSIQKLLLSW--NDELGGKIPTSFGKLCKLTSFSMASTKLSQ-----------------D  331 (931)
Q Consensus       281 ----------~~~~~~l~~l~~L~~L~L~~--n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-----------------~  331 (931)
                                ............++.+.+..  | .+++ +|..++++++|+.|++++|.+++                 .
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~  480 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY  480 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccC-cccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence                      00000012223344444443  4 5666 78888888888888888888887                 3


Q ss_pred             chhhhh--hcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCc-CCc-CccccccCCC-------CCCEEEc
Q 002360          332 ISEILG--IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQ-MDG-SIPLSLGQMA-------NLESLDL  400 (931)
Q Consensus       332 ~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L  400 (931)
                      +|..++  .+     ++|++|++++|.+.+.+|..++++++|++|++++|. +.+ .+|..++.++       +|++|++
T Consensus       481 iP~~l~f~~L-----~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L  555 (876)
T 4ecn_A          481 ENEELSWSNL-----KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM  555 (876)
T ss_dssp             TTSCCCGGGC-----TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC
T ss_pred             CChhhhhccC-----CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe
Confidence            676655  66     889999999999989999999999999999999998 887 7887666554       8999999


Q ss_pred             cCCcCCCccch-hhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCC
Q 002360          401 SNNKLNGTVSE-IHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRIS  479 (931)
Q Consensus       401 ~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~  479 (931)
                      ++|+++ .+|. .                                                .+..+++|+.|++++|+++
T Consensus       556 s~N~L~-~ip~~~------------------------------------------------~l~~L~~L~~L~Ls~N~l~  586 (876)
T 4ecn_A          556 GYNNLE-EFPASA------------------------------------------------SLQKMVKLGLLDCVHNKVR  586 (876)
T ss_dssp             CSSCCC-BCCCHH------------------------------------------------HHTTCTTCCEEECTTSCCC
T ss_pred             eCCcCC-ccCChh------------------------------------------------hhhcCCCCCEEECCCCCcc
Confidence            888876 4432 1                                                3444556666666666655


Q ss_pred             CCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEEC
Q 002360          480 DKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL  559 (931)
Q Consensus       480 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~L  559 (931)
                       .+| .+                                                              +.+++|+.|++
T Consensus       587 -~lp-~~--------------------------------------------------------------~~L~~L~~L~L  602 (876)
T 4ecn_A          587 -HLE-AF--------------------------------------------------------------GTNVKLTDLKL  602 (876)
T ss_dssp             -BCC-CC--------------------------------------------------------------CTTSEESEEEC
T ss_pred             -cch-hh--------------------------------------------------------------cCCCcceEEEC
Confidence             333 11                                                              11344555555


Q ss_pred             cCCccccccCCcccCCCC-CCEEecCCCcceecCCCcccCCCC--CCEEEccCCcCccccchhh---c--cCCCCcEEec
Q 002360          560 STNHFSEGIPDCWMNWPR-LRTLNLGNNNFTGSLPMSIGTLTS--LRSLNLRNNRLSGVIPTSF---K--NFSILEALDV  631 (931)
Q Consensus       560 s~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~--L~~L~L~~n~l~~~~p~~~---~--~l~~L~~L~L  631 (931)
                      ++|+++ .+|..+..+++ |+.|++++|+++ .+|..+..++.  |+.|++++|++.+.+|...   .  .+++|+.|++
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L  680 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL  680 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence            555555 35555555665 666666666666 55555554433  6666666666665544221   1  2346777777


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCC--------CCCcCEEEccCCccccccCcccc--ccccccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR--------LASLQILDVAYNSLLGTIPRCIN--NFSAMAT  701 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~  701 (931)
                      ++|+++ .+|..++..+++|+.|+|++|+++ .+|..+..        +++|+.|+|++|+++ .+|..+.  .+++|  
T Consensus       681 s~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L--  755 (876)
T 4ecn_A          681 SYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL--  755 (876)
T ss_dssp             CSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC--
T ss_pred             cCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc--
Confidence            777776 677776656777777777777777 45544332        237888888888887 6676654  44444  


Q ss_pred             cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC------C
Q 002360          702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH------N  775 (931)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~------N  775 (931)
                                                                +.|+|++|++++ +|..++.+++|+.|+|++      |
T Consensus       756 ------------------------------------------~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N  792 (876)
T 4ecn_A          756 ------------------------------------------SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN  792 (876)
T ss_dssp             ------------------------------------------CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred             ------------------------------------------CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence                                                      778888888886 788888888888888866      8


Q ss_pred             cCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccC
Q 002360          776 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI  829 (931)
Q Consensus       776 ~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  829 (931)
                      ++.+.+|..++.+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++...-
T Consensus       793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID  843 (876)
T ss_dssp             BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred             cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence            89999999999999999999999999 78998876  69999999999987543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.9e-43  Score=418.00  Aligned_cols=490  Identities=16%  Similarity=0.177  Sum_probs=325.5

Q ss_pred             CCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360          242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF  321 (931)
Q Consensus       242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  321 (931)
                      .+++.|+|+++.+.+.+|..++.+++|++|+|++|.+......  ++..            .....+|...  +..|+ +
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~--~~~~------------~~~~~~~~~~--~~~l~-l  143 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERL--FGPK------------GISANMSDEQ--KQKMR-M  143 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCS--BSTT------------SBCTTCCHHH--HHHHH-T
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCcc--cccc------------ccccCchHHH--HHHHH-h
Confidence            4688888888888888888888888888888888865211100  1100            0000112111  22333 4


Q ss_pred             EcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEecc--CCcCCcCccccccCCCCCCEEE
Q 002360          322 SMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLS--NNQMDGSIPLSLGQMANLESLD  399 (931)
Q Consensus       322 ~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~  399 (931)
                      +++.+.+.+.++..+....    ..+..+++....+..      .....++.+.+.  .|.+++ +|..++++++|++|+
T Consensus       144 ~l~~~~l~~~~~~~~~~~~----~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~  212 (636)
T 4eco_A          144 HYQKTFVDYDPREDFSDLI----KDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFY  212 (636)
T ss_dssp             HHHHHHTCCCGGGGSCHHH----HHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred             hHHHhhhccCchhhHHHHH----HHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEE
Confidence            4444444444443332110    112222222111110      011122222222  345555 565666666666666


Q ss_pred             ccCCcCCCc-cchhhhccccccceeccCCceeEEecCCCCC--CCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCC
Q 002360          400 LSNNKLNGT-VSEIHFVNLTKLVSFLANANSLIFKINPNWV--PPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST  476 (931)
Q Consensus       400 L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n  476 (931)
                      |++|.+++. ++......         ..+......+..+.  .+++|++|++++|.+.+.+|..+..+++|+.|++++|
T Consensus       213 Ls~n~l~~~~~~~~~~~~---------~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          213 MGNSPFVAENICEAWENE---------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             EESCCCCGGGBSSSCSCT---------TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             CcCCcccccccccccccc---------ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            666666552 00000000         00000000111222  3445555666666666666777777788888888888


Q ss_pred             C-CCC-CcchhHHhc-----cccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCC
Q 002360          477 R-ISD-KIPRAFWNS-----IFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGEN  549 (931)
Q Consensus       477 ~-i~~-~~~~~~~~~-----~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~  549 (931)
                      + +++ .+|..+..-     +++|++|++++|.++ .+|..                                   ..++
T Consensus       284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~-----------------------------------~~l~  327 (636)
T 4eco_A          284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVE-----------------------------------TSLQ  327 (636)
T ss_dssp             TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCH-----------------------------------HHHT
T ss_pred             CCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCch-----------------------------------hhhc
Confidence            7 777 677666441     356666666666665 33320                                   0123


Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCC-CCEEEccCCcCccccchhhccCC--CC
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTS-LRSLNLRNNRLSGVIPTSFKNFS--IL  626 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~~~~l~--~L  626 (931)
                      .+++|+.|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|
T Consensus       328 ~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L  404 (636)
T 4eco_A          328 KMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM  404 (636)
T ss_dssp             TCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred             cCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence            46789999999999998888 8888999999999999999 78888999999 999999999998 6787777655  89


Q ss_pred             cEEecCCCcccccCchhHHh------hcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccc-cccc
Q 002360          627 EALDVGENELVGSIPTWIGE------RFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN-FSAM  699 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L  699 (931)
                      ++|++++|++.+.+|..+..      .+++|++|++++|+++...+..+..+++|+.|+|++|+++ .+|..+.. ... 
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~-  482 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE-  482 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE-
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc-
Confidence            99999999999888776541      3679999999999999544444567999999999999998 66654322 110 


Q ss_pred             cccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc--CCCCCCEEEccCCcC
Q 002360          700 ATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT--NLQGLQSLNLSHNLF  777 (931)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~--~l~~L~~L~Ls~N~l  777 (931)
                                                          ....++.|+.|+|++|+++ .+|..+.  .+++|++|+|++|++
T Consensus       483 ------------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l  525 (636)
T 4eco_A          483 ------------------------------------NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSF  525 (636)
T ss_dssp             ------------------------------------ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCC
Confidence                                                0011335699999999999 7898887  999999999999999


Q ss_pred             cccCCcCccCcCCCCEEec------cCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCCCC
Q 002360          778 TGRIPDNIGVMRSIESLDF------SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLC  849 (931)
Q Consensus       778 ~~~ip~~l~~l~~L~~LdL------s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~  849 (931)
                      ++ +|..++.+++|+.|+|      ++|++.+.+|..+..+++|++|++++|++ +.||.... ..+...++++|.+.
T Consensus       526 ~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          526 SK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNI  600 (636)
T ss_dssp             SS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTC
T ss_pred             CC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCc
Confidence            97 9999999999999999      56889999999999999999999999999 78897633 66777788888543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-40  Score=395.56  Aligned_cols=536  Identities=21%  Similarity=0.197  Sum_probs=376.8

Q ss_pred             EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCC
Q 002360          173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN  252 (931)
Q Consensus       173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  252 (931)
                      .+.++-+++.+|...     .+++++|+|++|.++++++.+|.++++|++|+|++|++++..+.+|.++++|++|+|++|
T Consensus        36 ~~c~~~~l~~vP~~l-----p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N  110 (635)
T 4g8a_A           36 YQCMELNFYKIPDNL-----PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN  110 (635)
T ss_dssp             EECTTSCCSSCCSSS-----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             EECCCCCcCccCCCC-----CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence            344444555555421     247888888888888888888889999999999999988777778888999999999999


Q ss_pred             cccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCc
Q 002360          253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQD  331 (931)
Q Consensus       253 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~  331 (931)
                      ++++..+.+|.++++|++|++++|.++ .++...++++++|++|++++| .+.+ ..|..+..+++|++|++++|.+.+.
T Consensus       111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          111 PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             CCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             cCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccc
Confidence            988887888888999999999999887 455555888888888888888 5544 5677778888888888888888777


Q ss_pred             chhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcC-ccccccCCCCCCEEEccCCcCCCccc
Q 002360          332 ISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGS-IPLSLGQMANLESLDLSNNKLNGTVS  410 (931)
Q Consensus       332 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~  410 (931)
                      .+..+..+.... .....++++.|.+....+..+. ...++.+++.+|..... .+..+..++.++...+..+...... 
T Consensus       189 ~~~~l~~L~~l~-~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-  265 (635)
T 4g8a_A          189 YCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-  265 (635)
T ss_dssp             CGGGGHHHHTCT-TCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC-
T ss_pred             ccccccchhhhh-hhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccc-
Confidence            666665542111 1234566666666544443332 23345555555543321 2223444455544444322211100 


Q ss_pred             hhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcc--hhHHh
Q 002360          411 EIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP--RAFWN  488 (931)
Q Consensus       411 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~--~~~~~  488 (931)
                                                                .+.......+.....+...++..+.......  ...+.
T Consensus       266 ------------------------------------------~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~  303 (635)
T 4g8a_A          266 ------------------------------------------NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFN  303 (635)
T ss_dssp             ------------------------------------------CCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTG
T ss_pred             ------------------------------------------ccccccccccccccchhhhhhhhhhhcccccchhhhhh
Confidence                                                      0000111122222333333333222211110  01112


Q ss_pred             ccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCcccccc
Q 002360          489 SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGI  568 (931)
Q Consensus       489 ~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  568 (931)
                      ....++.+++.++.+..                                 ..      ......+++.|++.+|.+.+..
T Consensus       304 ~~~~l~~l~~~~~~~~~---------------------------------~~------~~~~~~~L~~L~l~~~~~~~~~  344 (635)
T 4g8a_A          304 CLTNVSSFSLVSVTIER---------------------------------VK------DFSYNFGWQHLELVNCKFGQFP  344 (635)
T ss_dssp             GGTTCSEEEEESCEEEE---------------------------------CG------GGGSCCCCSEEEEESCEESSCC
T ss_pred             hhccccccccccccccc---------------------------------cc------ccccchhhhhhhcccccccCcC
Confidence            23344444444443321                                 11      0122467899999999987754


Q ss_pred             CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhhccCCCCcEEecCCCcccccCchhHHh
Q 002360          569 PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSFKNFSILEALDVGENELVGSIPTWIGE  646 (931)
Q Consensus       569 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  646 (931)
                      +.   .++.|+.+++.+|.+....  ....+++|+.|++++|.+..  ..+..+..+.+|+.+++..|...+ ++..+. 
T Consensus       345 ~~---~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~-  417 (635)
T 4g8a_A          345 TL---KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL-  417 (635)
T ss_dssp             CC---BCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT-
T ss_pred             cc---cchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc-
Confidence            43   4567999999999887433  34578999999999999864  456677889999999999999874 444444 


Q ss_pred             hcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360          647 RFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT  725 (931)
Q Consensus       647 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (931)
                      .+++|+.++++.|+.....+ ..+..+++++.+++++|.+.+..|..+..++.+                          
T Consensus       418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L--------------------------  471 (635)
T 4g8a_A          418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL--------------------------  471 (635)
T ss_dssp             TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------
T ss_pred             ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh--------------------------
Confidence            69999999999998876654 467889999999999999998888777666555                          


Q ss_pred             eEEeecchhhhhhhccceeEEEcccCcc-cccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360          726 SLVMKGFLVEYNSILNLVRSIDISMNNF-SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l-~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                                        +.|+|++|++ .+.+|..|..+++|++|+|++|++++.+|..|+++++|++|+|++|+|++.
T Consensus       472 ------------------~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l  533 (635)
T 4g8a_A          472 ------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL  533 (635)
T ss_dssp             ------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred             ------------------hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence                              8899999985 456788999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCCCeeeCCCccccccCCCC-Ccc-CcccccccCCCCC-CC
Q 002360          805 IPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFDASSFAGNDL-CG  850 (931)
Q Consensus       805 ~p~~l~~l~~L~~L~ls~N~l~g~ip~~-~~~-~~~~~~~~~~n~l-~~  850 (931)
                      .|..|.++++|++||+++|++++.+|.. ..+ ..+...++++|++ |.
T Consensus       534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999999999999999998865 223 4567778899954 53

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.7e-41  Score=395.66  Aligned_cols=471  Identities=21%  Similarity=0.231  Sum_probs=254.9

Q ss_pred             CCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEec
Q 002360          194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSL  273 (931)
Q Consensus       194 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  273 (931)
                      ...+++++++|.++++|....   ++|++|++++|.+.+..+..|+.+++|++|++++|++++..|..|..+++|++|++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  107 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV  107 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence            344677777777776664322   67777777777777666677777777777777777777777777777777777777


Q ss_pred             cCCccccccCccccCCCCCccEEEccCCCCCcc-cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEc
Q 002360          274 EDNRLQGDISSLGLDNLTSIQKLLLSWNDELGG-KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYL  352 (931)
Q Consensus       274 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L  352 (931)
                      ++|.++ .+|..   .+++|++|++++| .+.+ ..|..++++++|++|++++|.+.+.   .+..+     ++|     
T Consensus       108 s~N~l~-~lp~~---~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l-----~~L-----  169 (562)
T 3a79_B          108 SHNRLQ-NISCC---PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPV-----AHL-----  169 (562)
T ss_dssp             TTSCCC-EECSC---CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGG-----TTS-----
T ss_pred             CCCcCC-ccCcc---ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCccccC---chhhh-----hhc-----
Confidence            777776 55553   6777777777777 5554 3456666666666666666665431   11111     222     


Q ss_pred             CCcccccccccccCCCCCCCEEeccCCcC--CcCccccccCCC-CCCEEEccCCcCCCccchhhhccccccceeccCCce
Q 002360          353 RGCQIFGHLTNQLGQFKRLNFLGLSNNQM--DGSIPLSLGQMA-NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANS  429 (931)
Q Consensus       353 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l--~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  429 (931)
                                       +|++|++++|.+  .+..|..+..+. ..-.+++++|.+.+.++...+..+++|+.++++.|.
T Consensus       170 -----------------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  232 (562)
T 3a79_B          170 -----------------HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND  232 (562)
T ss_dssp             -----------------CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCS
T ss_pred             -----------------eeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccc
Confidence                             124444444444  334444443332 011334455555444443333333333333333221


Q ss_pred             eEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHh--ccccceEEeccCcccccCC
Q 002360          430 LIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN--SIFQYYYLNVSGNQIYGGV  507 (931)
Q Consensus       430 l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~  507 (931)
                      ...                    .........+..++.|+.++++++.+.+........  ..++|++|++++|.++|.+
T Consensus       233 ~~~--------------------~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~i  292 (562)
T 3a79_B          233 ENC--------------------QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI  292 (562)
T ss_dssp             TTH--------------------HHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCC
T ss_pred             ccc--------------------chHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccc
Confidence            000                    000011122344455555555555443321111110  1124555555555554444


Q ss_pred             CCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC-CcccC---CCCCCEEec
Q 002360          508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP-DCWMN---WPRLRTLNL  583 (931)
Q Consensus       508 p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~---l~~L~~L~L  583 (931)
                      |.....                                .....++.|+.++++.+.+  .+| ..+..   ..+|+.|++
T Consensus       293 p~~~~~--------------------------------~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l  338 (562)
T 3a79_B          293 DREEFT--------------------------------YSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI  338 (562)
T ss_dssp             CCCCCC--------------------------------CCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred             cchhhh--------------------------------cccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence            421100                                0001123333333333333  122 11111   123555555


Q ss_pred             CCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccc
Q 002360          584 GNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG  663 (931)
Q Consensus       584 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~  663 (931)
                      ++|.+....  ....+++|++|++++|++++..|..+.+                         +++|++|++++|++++
T Consensus       339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~  391 (562)
T 3a79_B          339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCST-------------------------LKRLQTLILQRNGLKN  391 (562)
T ss_dssp             ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCS-------------------------CSSCCEEECCSSCCCB
T ss_pred             cCCCccccc--CccCCCCceEEECCCCccccchhhhhcc-------------------------cCCCCEEECCCCCcCC
Confidence            555443111  0133444444444444444444444444                         4555555555555543


Q ss_pred             c--CCcccCCCCCcCEEEccCCccccccCcc-ccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhc
Q 002360          664 D--FPIQLCRLASLQILDVAYNSLLGTIPRC-INNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSIL  740 (931)
Q Consensus       664 ~--~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (931)
                      .  +|..+..+++|+.|++++|++++.+|.. +..+++                                          
T Consensus       392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~------------------------------------------  429 (562)
T 3a79_B          392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES------------------------------------------  429 (562)
T ss_dssp             TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT------------------------------------------
T ss_pred             cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc------------------------------------------
Confidence            2  2344566666777777777766544432 333333                                          


Q ss_pred             cceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeee
Q 002360          741 NLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLN  819 (931)
Q Consensus       741 ~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~  819 (931)
                        |+.|++++|++++.+|..+.  ++|++|+|++|+++ .+|..+..+++|++|||++|+++ .+|.. +..+++|++|+
T Consensus       430 --L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          430 --ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             --CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             --CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence              36677777777766665554  68888888888888 78877778888999999999988 45554 88889999999


Q ss_pred             CCCccccccCCC
Q 002360          820 LSNNNLNGEIPS  831 (931)
Q Consensus       820 ls~N~l~g~ip~  831 (931)
                      +++|+++|.+|.
T Consensus       504 l~~N~~~c~c~~  515 (562)
T 3a79_B          504 LHDNPWDCTCPG  515 (562)
T ss_dssp             CCSCCBCCCHHH
T ss_pred             ecCCCcCCCcch
Confidence            999999887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=6.5e-41  Score=392.40  Aligned_cols=463  Identities=24%  Similarity=0.282  Sum_probs=268.7

Q ss_pred             EEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccC
Q 002360           60 LELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLG  139 (931)
Q Consensus        60 ~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~  139 (931)
                      ++++++++            .+. .+|..+.  ++|++|++++|.+++. .|..|.++++|++|+|++|.+++..|.+|.
T Consensus        34 ~~l~ls~~------------~L~-~ip~~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   97 (562)
T 3a79_B           34 SMVDYSNR------------NLT-HVPKDLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFL   97 (562)
T ss_dssp             CEEECTTS------------CCC-SCCTTSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTT
T ss_pred             cEEEcCCC------------CCc-cCCCCCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhC
Confidence            66677664            333 3555443  6677777777777654 356677777777777777777766666677


Q ss_pred             CCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCC-ccccCCCC
Q 002360          140 NLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP-LLSSANFS  218 (931)
Q Consensus       140 ~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~  218 (931)
                      ++++|++|+|++|.++.+|..                               .+++|++|++++|.+.+++ +..+.+++
T Consensus        98 ~l~~L~~L~Ls~N~l~~lp~~-------------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~  146 (562)
T 3a79_B           98 FNQDLEYLDVSHNRLQNISCC-------------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLT  146 (562)
T ss_dssp             TCTTCCEEECTTSCCCEECSC-------------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCT
T ss_pred             CCCCCCEEECCCCcCCccCcc-------------------------------ccccCCEEECCCCCccccCchHhhcccC
Confidence            777777777777666554432                               3445555555555555543 34566666


Q ss_pred             CCCEEEccCCcCCCCCcccccCCCCC--CEEEcCCCcc--cccccccccCCC--CCCEEeccCCccccccCccccCCCCC
Q 002360          219 SLTTLDLSGNQFQGQIPSRLGNLTSL--KHLDLYSNQF--NSAVLGWLSKLN--DLEVLSLEDNRLQGDISSLGLDNLTS  292 (931)
Q Consensus       219 ~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~  292 (931)
                      +|++|++++|++.+.   .+..+++|  ++|++++|.+  ++..|..+..+.  .+ .+++++|.+.+.++...+..+++
T Consensus       147 ~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~  222 (562)
T 3a79_B          147 KLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGH  222 (562)
T ss_dssp             TCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEE
T ss_pred             cccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccce
Confidence            666666666666542   23333333  6677776666  555566555543  22 44666777666666655667777


Q ss_pred             ccEEEccCCCCCcc---cCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCC
Q 002360          293 IQKLLLSWNDELGG---KIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK  369 (931)
Q Consensus       293 L~~L~L~~n~~~~~---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~  369 (931)
                      |+.+++++|.....   .....+..+++|+.+++..+.+.+..                        +.+.. ..+ ..+
T Consensus       223 L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~------------------------~~~~~-~~~-~~~  276 (562)
T 3a79_B          223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC------------------------SVKLF-QFF-WPR  276 (562)
T ss_dssp             EEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH------------------------HHHHH-HHH-TTS
T ss_pred             EEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH------------------------HHHHH-Hhh-hcc
Confidence            77777777621111   11122334444444444333332211                        11111 111 234


Q ss_pred             CCCEEeccCCcCCcCccccc-----cCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccc
Q 002360          370 RLNFLGLSNNQMDGSIPLSL-----GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQL  444 (931)
Q Consensus       370 ~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  444 (931)
                      +|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+|...+..                            
T Consensus       277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~----------------------------  326 (562)
T 3a79_B          277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS----------------------------  326 (562)
T ss_dssp             SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH----------------------------
T ss_pred             cccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh----------------------------
Confidence            77777777777777777655     4444444444444443  222111000                            


Q ss_pred             cEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCc
Q 002360          445 TVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLL  524 (931)
Q Consensus       445 ~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~  524 (931)
                                                               ++.                                    
T Consensus       327 -----------------------------------------~~~------------------------------------  329 (562)
T 3a79_B          327 -----------------------------------------VFA------------------------------------  329 (562)
T ss_dssp             -----------------------------------------HHH------------------------------------
T ss_pred             -----------------------------------------hhc------------------------------------
Confidence                                                     000                                    


Q ss_pred             cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360          525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS  604 (931)
Q Consensus       525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  604 (931)
                                                ..+|+.|++++|.+....  ....+++|++|++++|++++..|..+..+++|++
T Consensus       330 --------------------------~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  381 (562)
T 3a79_B          330 --------------------------EMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT  381 (562)
T ss_dssp             --------------------------TCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCE
T ss_pred             --------------------------cCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCE
Confidence                                      012333344444332211  1134566777777777777666667777777777


Q ss_pred             EEccCCcCccc--cchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccC
Q 002360          605 LNLRNNRLSGV--IPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAY  682 (931)
Q Consensus       605 L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  682 (931)
                      |++++|++++.  .|..+.++++|++|++++|++++.+|...                        +..+++|+.|++++
T Consensus       382 L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~------------------------~~~l~~L~~L~l~~  437 (562)
T 3a79_B          382 LILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT------------------------CAWAESILVLNLSS  437 (562)
T ss_dssp             EECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCC------------------------CCCCTTCCEEECCS
T ss_pred             EECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhh------------------------hcCcccCCEEECCC
Confidence            77777777753  34556666666666666666664455432                        33445555555555


Q ss_pred             CccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc
Q 002360          683 NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT  762 (931)
Q Consensus       683 N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~  762 (931)
                      |++++.+|..+.  +                                            .|+.|+|++|+++ .+|..+.
T Consensus       438 n~l~~~~~~~l~--~--------------------------------------------~L~~L~L~~N~l~-~ip~~~~  470 (562)
T 3a79_B          438 NMLTGSVFRCLP--P--------------------------------------------KVKVLDLHNNRIM-SIPKDVT  470 (562)
T ss_dssp             SCCCGGGGSSCC--T--------------------------------------------TCSEEECCSSCCC-CCCTTTT
T ss_pred             CCCCcchhhhhc--C--------------------------------------------cCCEEECCCCcCc-ccChhhc
Confidence            555544443321  1                                            2366777777776 6777777


Q ss_pred             CCCCCCEEEccCCcCcccCCcC-ccCcCCCCEEeccCCcCcccCc
Q 002360          763 NLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       763 ~l~~L~~L~Ls~N~l~~~ip~~-l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                      .+++|++|+|++|+++ .+|.. ++.+++|+.|++++|++++..|
T Consensus       471 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          471 HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            8999999999999999 56665 8999999999999999998765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.3e-38  Score=359.47  Aligned_cols=62  Identities=8%  Similarity=0.034  Sum_probs=31.4

Q ss_pred             ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCC
Q 002360           89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV  152 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n  152 (931)
                      -.+.++|++|++++|.+.  .+|+.++++++|++|++++|.+.+.+|.+++++++|+++++++|
T Consensus         7 ~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c   68 (454)
T 1jl5_A            7 NVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC   68 (454)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHH
T ss_pred             ccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhh
Confidence            345689999999999994  48999999999999999999999999999999998888777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3e-38  Score=360.64  Aligned_cols=372  Identities=17%  Similarity=0.149  Sum_probs=243.7

Q ss_pred             CCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEE
Q 002360          369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLE  448 (931)
Q Consensus       369 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~  448 (931)
                      ++|++|++++|.+.+..|..+.++++|++|++++|.+.+.++...|.++++|++|++++|.+....+..+..+++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45555555555555544555555555555555555555444444455555555555544444444444455555666666


Q ss_pred             ccCCCCCCCcChh--hhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccc
Q 002360          449 LRSCHLGPRFPLW--LQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG  526 (931)
Q Consensus       449 L~~~~l~~~~~~~--~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l  526 (931)
                      +++|.+.+..+..  +..+++|++|++++|++++..|..++..+++|++|++++|.+.+..|....              
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--------------  175 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL--------------  175 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG--------------
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhh--------------
Confidence            6666665533333  666677777777777776666665555555555555555555443332100              


Q ss_pred             cEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEE
Q 002360          527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN  606 (931)
Q Consensus       527 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  606 (931)
                                         . . ...+|+.|++++|.+.+..+..+..                .....+..+++|++|+
T Consensus       176 -------------------~-l-~~~~L~~L~l~~n~l~~~~~~~~~~----------------~~~~~~~~~~~L~~L~  218 (455)
T 3v47_A          176 -------------------N-F-QGKHFTLLRLSSITLQDMNEYWLGW----------------EKCGNPFKNTSITTLD  218 (455)
T ss_dssp             -------------------G-G-TTCEEEEEECTTCBCTTCSTTCTTH----------------HHHCCTTTTCEEEEEE
T ss_pred             -------------------c-c-ccccccccccccCcccccchhhccc----------------cccccccccceeeeEe
Confidence                               0 0 0134566666666655533322110                0000112334455555


Q ss_pred             ccCCcCccccchhhccC---CCCcEEecCCCccccc----------CchhHH-hhcCcCcEEEccCccccccCCcccCCC
Q 002360          607 LRNNRLSGVIPTSFKNF---SILEALDVGENELVGS----------IPTWIG-ERFSRLMILILRSNKFHGDFPIQLCRL  672 (931)
Q Consensus       607 L~~n~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~----------~p~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l  672 (931)
                      +++|++++..|..+...   ++|+.|++++|.+.+.          .+..+. ...++|+.|++++|.+.+..|..+..+
T Consensus       219 Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  298 (455)
T 3v47_A          219 LSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF  298 (455)
T ss_dssp             CTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC
T ss_pred             cCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC
Confidence            55555544444444332   4455555554433221          111111 124789999999999999999999999


Q ss_pred             CCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc
Q 002360          673 ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN  752 (931)
Q Consensus       673 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~  752 (931)
                      ++|+.|+|++|++.+..|..|.++++|                                            +.|+|++|+
T Consensus       299 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~  334 (455)
T 3v47_A          299 TDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------------------LKLNLSQNF  334 (455)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------------------CEEECCSSC
T ss_pred             CCCCEEECCCCcccccChhHhcCcccC--------------------------------------------CEEECCCCc
Confidence            999999999999998888888776665                                            899999999


Q ss_pred             ccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC
Q 002360          753 FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  832 (931)
Q Consensus       753 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  832 (931)
                      +++..|..++.+++|++|+|++|++++..|..|+.+++|++|++++|++++..+..+..+++|++|++++|+++|.+|..
T Consensus       335 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  414 (455)
T 3v47_A          335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  414 (455)
T ss_dssp             CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence            99888999999999999999999999999999999999999999999999877778899999999999999999999965


Q ss_pred             Ccc
Q 002360          833 TQL  835 (931)
Q Consensus       833 ~~~  835 (931)
                      ..+
T Consensus       415 ~~l  417 (455)
T 3v47_A          415 DYL  417 (455)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.4e-36  Score=346.91  Aligned_cols=377  Identities=20%  Similarity=0.167  Sum_probs=244.3

Q ss_pred             CCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEE
Q 002360          242 TSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSF  321 (931)
Q Consensus       242 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  321 (931)
                      ++|++|++++|.+++..|..++++++|++|++++|.+.+.++...+..+++|++|++++| .+.+..|..+.++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence            345555555555544444555555555555555555544444433555555555555555 4555555555555555555


Q ss_pred             EcCCCcCCCcchhh--hhhcccccccCccEEEcCCcccccccccc-cCCCCCCCEEeccCCcCCcCccccccCC--CCCC
Q 002360          322 SMASTKLSQDISEI--LGIFSGCVAYELESLYLRGCQIFGHLTNQ-LGQFKRLNFLGLSNNQMDGSIPLSLGQM--ANLE  396 (931)
Q Consensus       322 ~l~~~~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~  396 (931)
                      ++++|.+.+..+..  +..+     ++|++|++++|.+.+..|.. +..+++|++|++++|.+.+..+..+..+  ++|+
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPL-----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTC-----TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             eCCCCCCCccccCcccccCc-----ccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            55555555433332  3333     45555555555555544443 4555556666666555555555444443  4455


Q ss_pred             EEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCC
Q 002360          397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISST  476 (931)
Q Consensus       397 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n  476 (931)
                      .|++++|.+.+..+. .+..                                        .....+..+++|+.|++++|
T Consensus       184 ~L~l~~n~l~~~~~~-~~~~----------------------------------------~~~~~~~~~~~L~~L~Ls~n  222 (455)
T 3v47_A          184 LLRLSSITLQDMNEY-WLGW----------------------------------------EKCGNPFKNTSITTLDLSGN  222 (455)
T ss_dssp             EEECTTCBCTTCSTT-CTTH----------------------------------------HHHCCTTTTCEEEEEECTTS
T ss_pred             ccccccCcccccchh-hccc----------------------------------------cccccccccceeeeEecCCC
Confidence            555555555422111 0000                                        00001123456677777777


Q ss_pred             CCCCCcchhHHhc--cccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCc
Q 002360          477 RISDKIPRAFWNS--IFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNI  554 (931)
Q Consensus       477 ~i~~~~~~~~~~~--~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L  554 (931)
                      ++++..|..+...  ..+++.|++++|...+......                       .+.+.....+..  ...++|
T Consensus       223 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~--~~~~~L  277 (455)
T 3v47_A          223 GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT-----------------------NFKDPDNFTFKG--LEASGV  277 (455)
T ss_dssp             CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC-----------------------SSCCCCTTTTGG--GTTSCC
T ss_pred             cccccchhhhhccccccceeeEeeccccccccccchh-----------------------hhccCccccccc--ccccCc
Confidence            7766666655543  2567777777776554322110                       011000000000  013689


Q ss_pred             cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360          555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN  634 (931)
Q Consensus       555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  634 (931)
                      +.|++++|++++..|..+..+++|++|++++|++++..|..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus       278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  357 (455)
T 3v47_A          278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN  357 (455)
T ss_dssp             CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS
T ss_pred             eEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC
Confidence            99999999999999999999999999999999999988999999999999999999999998999999999999999999


Q ss_pred             cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCc
Q 002360          635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPR  691 (931)
Q Consensus       635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~  691 (931)
                      ++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..|.
T Consensus       358 ~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          358 HIRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            99977777776 799999999999999987777889999999999999999988873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.1e-37  Score=335.25  Aligned_cols=225  Identities=31%  Similarity=0.490  Sum_probs=154.2

Q ss_pred             CCCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcC--ccceEecCCC--CcEEEEEcCCCCCCCchhhhcccccce--
Q 002360           10 TSCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCK--WGGVLCGNFT--GHVLELNLQNPFSPDDNEAYQRSMLVG--   83 (931)
Q Consensus        10 ~~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~--w~g~~c~~~~--~~v~~L~l~~~~~~~~~~~~~~~~~~~--   83 (931)
                      +.|.++|++||++||+++.||. .+++|. .+++||.  |.||+|+...  ++|++|+++++            .+.+  
T Consensus         1 ~~c~~~~~~aL~~~k~~~~~~~-~l~~W~-~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~------------~l~~~~   66 (313)
T 1ogq_A            1 ELCNPQDKQALLQIKKDLGNPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------NLPKPY   66 (313)
T ss_dssp             CCSCHHHHHHHHHHHHHTTCCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------CCSSCE
T ss_pred             CCCCHHHHHHHHHHHHhcCCcc-cccCCC-CCCCCCcCCCcceEeCCCCCCceEEEEECCCC------------CccCCc
Confidence            3699999999999999999886 789998 5779999  9999998644  89999999996            7777  


Q ss_pred             eecccccCccCCcEeeCCC-CCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCccc-ccccCc
Q 002360           84 KINPSLLELKHLVHLDLSG-NDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFE-LHAETI  161 (931)
Q Consensus        84 ~l~~~l~~l~~L~~L~Ls~-n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~-~~~~~~  161 (931)
                      .+|..+.++++|++|++++ |.+.+. +|..|+++++|++|+|++|.+++.+|..|.++++|++|++++|.+. ..|.  
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--  143 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP--  143 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG--
T ss_pred             ccChhHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh--
Confidence            8888999999999999995 888775 7888999999999999999998888888888888888888877654 2222  


Q ss_pred             cccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCC-CCCEEEccCCcCCCCCcccccC
Q 002360          162 SWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFS-SLTTLDLSGNQFQGQIPSRLGN  240 (931)
Q Consensus       162 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~  240 (931)
                                                 .+..+++|++|++++|.+++..+..+..++ +|++|++++|++.+.+|..++.
T Consensus       144 ---------------------------~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  196 (313)
T 1ogq_A          144 ---------------------------SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN  196 (313)
T ss_dssp             ---------------------------GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred             ---------------------------HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence                                       123344444444444444433333444443 4444444444444444444444


Q ss_pred             CCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccc
Q 002360          241 LTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQ  279 (931)
Q Consensus       241 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  279 (931)
                      ++ |++|++++|.+++..|..+..+++|++|++++|.++
T Consensus       197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence            43 444444444444444444444444444444444443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2e-37  Score=349.82  Aligned_cols=198  Identities=29%  Similarity=0.384  Sum_probs=105.9

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|++|++++|+++. +| .+..+++|++|++++|++++ +|..   +++|++|++++|++++ +|..   .++|+.|++
T Consensus       215 ~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l  284 (454)
T 1jl5_A          215 LSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDV  284 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             CcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEEC
Confidence            467777777777763 45 36777777777777777774 4432   3677777777777775 3332   366777777


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCC-CCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRL-ASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      ++|++++ +|.    ..++|+.|++++|++++. +    .+ ++|+.|++++|++++ +|..+                 
T Consensus       285 s~N~l~~-l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~~-----------------  336 (454)
T 1jl5_A          285 SENIFSG-LSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPALP-----------------  336 (454)
T ss_dssp             CSSCCSE-ESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCCC-----------------
T ss_pred             cCCccCc-ccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-ccccC-----------------
Confidence            7777764 332    125677777777777642 2    22 467777777777764 44321                 


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcc--cCCcCccCc
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTG--RIPDNIGVM  788 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l  788 (931)
                                                    +.|+.|++++|+++ .+|.   .+++|++|++++|++++  .+|.+++. 
T Consensus       337 ------------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~-  381 (454)
T 1jl5_A          337 ------------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED-  381 (454)
T ss_dssp             ------------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred             ------------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence                                          12366777777776 4555   35677777777777776  56665543 


Q ss_pred             CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc--cCCCC
Q 002360          789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG--EIPSS  832 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g--~ip~~  832 (931)
                             ++.|.+.+.+|..   +++|++||+++|+++|  .+|..
T Consensus       382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             -------EECCC----------------------------------
T ss_pred             -------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence                   2345666666653   3788899999999988  77753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=8.8e-35  Score=328.46  Aligned_cols=214  Identities=22%  Similarity=0.185  Sum_probs=156.2

Q ss_pred             ecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCcccc
Q 002360           85 INPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWL  164 (931)
Q Consensus        85 l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l  164 (931)
                      .+.++.++++|++|++++|.+++.  | .++.+++|++|+|++|.+++ +|  ++.+++|++|++++|.++.++     +
T Consensus        34 ~~~~~~~l~~L~~L~Ls~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~-----~  102 (457)
T 3bz5_A           34 DTISEEQLATLTSLDCHNSSITDM--T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD-----V  102 (457)
T ss_dssp             SEEEHHHHTTCCEEECCSSCCCCC--T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-----C
T ss_pred             cccChhHcCCCCEEEccCCCcccC--h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee-----c
Confidence            344677889999999999999853  5 68899999999999999886 34  888999999999998887653     6


Q ss_pred             CCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 002360          165 SGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSL  244 (931)
Q Consensus       165 ~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  244 (931)
                      +++++|++|++++|+++.++     +..+++|++|++++|.+++++   ++++++|++|++++|...+.+  .++.+++|
T Consensus       103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L  172 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQL  172 (457)
T ss_dssp             TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred             CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcC
Confidence            77888888888888887753     567788888888888877753   667778888888888554444  36677788


Q ss_pred             CEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcC
Q 002360          245 KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMA  324 (931)
Q Consensus       245 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~  324 (931)
                      ++|++++|++++. |  ++.+++|+.|++++|.+++.    .+..+++|++|++++| .+.+ +|  +..+++|+.|+++
T Consensus       173 ~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N-~l~~-ip--~~~l~~L~~L~l~  241 (457)
T 3bz5_A          173 TTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSN-KLTE-ID--VTPLTQLTYFDCS  241 (457)
T ss_dssp             CEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSS-CCSC-CC--CTTCTTCSEEECC
T ss_pred             CEEECCCCcccee-c--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCC-cccc-cC--ccccCCCCEEEee
Confidence            8888888877664 3  66777777777777777642    1566677777777766 5554 33  4455555555555


Q ss_pred             CCcCCC
Q 002360          325 STKLSQ  330 (931)
Q Consensus       325 ~~~l~~  330 (931)
                      +|.+++
T Consensus       242 ~N~l~~  247 (457)
T 3bz5_A          242 VNPLTE  247 (457)
T ss_dssp             SSCCSC
T ss_pred             CCcCCC
Confidence            555444

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.2e-35  Score=332.03  Aligned_cols=213  Identities=20%  Similarity=0.182  Sum_probs=119.1

Q ss_pred             hhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHh
Q 002360          111 PKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVI  190 (931)
Q Consensus       111 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l  190 (931)
                      +..++++++|++|++++|.+++ +| .++.+++|++|++++|.++.++     +..+++|+                   
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~-------------------   88 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD-----LSQNTNLT-------------------   88 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC-----CTTCTTCS-------------------
T ss_pred             ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc-----cccCCCCC-------------------
Confidence            4456777777777777777774 34 5777777777777777655442     33444444                   


Q ss_pred             ccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCE
Q 002360          191 NSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV  270 (931)
Q Consensus       191 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  270 (931)
                             +|++++|.+++++   +.++++|++|++++|++++. +  ++.+++|++|++++|++++.   .++.+++|++
T Consensus        89 -------~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~  152 (457)
T 3bz5_A           89 -------YLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTE  152 (457)
T ss_dssp             -------EEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCE
T ss_pred             -------EEECcCCCCceee---cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCE
Confidence                   4444444444432   44455555555555555532 2  45555555555555555443   1445555555


Q ss_pred             EeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEE
Q 002360          271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESL  350 (931)
Q Consensus       271 L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L  350 (931)
                      |++++|...+.++   +..+++|++|++++| .+.+ +|  +..+                             ++|++|
T Consensus       153 L~l~~n~~~~~~~---~~~l~~L~~L~ls~n-~l~~-l~--l~~l-----------------------------~~L~~L  196 (457)
T 3bz5_A          153 LDCHLNKKITKLD---VTPQTQLTTLDCSFN-KITE-LD--VSQN-----------------------------KLLNRL  196 (457)
T ss_dssp             EECTTCSCCCCCC---CTTCTTCCEEECCSS-CCCC-CC--CTTC-----------------------------TTCCEE
T ss_pred             EECCCCCcccccc---cccCCcCCEEECCCC-ccce-ec--cccC-----------------------------CCCCEE
Confidence            5555554333331   444555555555555 3332 11  2222                             445555


Q ss_pred             EcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCC
Q 002360          351 YLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNG  407 (931)
Q Consensus       351 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  407 (931)
                      ++++|++++.   .++.+++|++|++++|.+.+ +|  ++.+++|++|++++|++++
T Consensus       197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             ECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             ECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            5555555443   25666777777777777775 44  6677777777777777764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-35  Score=317.66  Aligned_cols=258  Identities=32%  Similarity=0.563  Sum_probs=243.9

Q ss_pred             CCccEEECcCCcccc--ccCCcccCCCCCCEEecCC-CcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcE
Q 002360          552 KNIEFLKLSTNHFSE--GIPDCWMNWPRLRTLNLGN-NNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEA  628 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  628 (931)
                      .+++.|++++|.+++  .+|..+.++++|++|++++ |.+.+.+|..|..+++|++|++++|.+++.+|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            579999999999998  8999999999999999995 9999999999999999999999999999999999999999999


Q ss_pred             EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCC-CcCEEEccCCccccccCccccccccccccCCCCC
Q 002360          629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLA-SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ  707 (931)
Q Consensus       629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  707 (931)
                      |++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ .|+.|++++|++++.+|..+..++ |        
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L--------  199 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L--------  199 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence            99999999999999887 799999999999999999999999998 999999999999999998887654 4        


Q ss_pred             CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360          708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  787 (931)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  787 (931)
                                                          +.|++++|++++.+|..+..+++|++|+|++|++++.+|. +..
T Consensus       200 ------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~  242 (313)
T 1ogq_A          200 ------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL  242 (313)
T ss_dssp             ------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred             ------------------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence                                                8999999999999999999999999999999999987777 889


Q ss_pred             cCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCCCCCC
Q 002360          788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLSSC  856 (931)
Q Consensus       788 l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c  856 (931)
                      +++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...++..+...++.+| .+||.|...|
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence            99999999999999999999999999999999999999999999988999999999999 6999887777

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=329.52  Aligned_cols=235  Identities=18%  Similarity=0.177  Sum_probs=166.5

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|++|++++|++++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+.++++|+.|+
T Consensus       103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR  182 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence            45677777777777766666777777777777777777766666777777777777777777766666677777777777


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|.+.+..+..+ ..+++|+.|++++|.+.+.+|.......+|+.|++++|++++..+..+.+++.|           
T Consensus       183 l~~n~i~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  250 (477)
T 2id5_A          183 LRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL-----------  250 (477)
T ss_dssp             EESCCCCEECTTCS-CSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC-----------
T ss_pred             CCCCcCcEeChhhc-ccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc-----------
Confidence            77777764333333 367777777777777666666666666677777777777764333444444443           


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                       +.|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++
T Consensus       251 ---------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  297 (477)
T 2id5_A          251 ---------------------------------RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY  297 (477)
T ss_dssp             ---------------------------------CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred             ---------------------------------CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence                                             67777777777766677777777777777777777777777777777


Q ss_pred             CCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       791 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      |+.|||++|++++..+..|..+++|++|++++|+++|.++
T Consensus       298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~  337 (477)
T 2id5_A          298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR  337 (477)
T ss_dssp             CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred             CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence            7777777777777666677777777777777777776654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-33  Score=321.07  Aligned_cols=216  Identities=26%  Similarity=0.395  Sum_probs=178.0

Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .+++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|  +..+++|++|++++|.+++.  ..+..+++|+.|
T Consensus       175 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L  248 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDL  248 (466)
T ss_dssp             TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEE
Confidence            367788888888887764  347778888889998888886554  66788899999999988864  457888999999


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      ++++|++.+..|  + ..+++|++|++++|.+++..+  +..+++|+.|++++|++.+..|  +..+++           
T Consensus       249 ~l~~n~l~~~~~--~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~-----------  310 (466)
T 1o6v_A          249 DLANNQISNLAP--L-SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKN-----------  310 (466)
T ss_dssp             ECCSSCCCCCGG--G-TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTT-----------
T ss_pred             ECCCCccccchh--h-hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCC-----------
Confidence            999999885443  3 378999999999999986544  7889999999999999986543  444443           


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  789 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  789 (931)
                                                       |+.|+|++|++++..|  +..+++|++|++++|++++.  ..++.++
T Consensus       311 ---------------------------------L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~  353 (466)
T 1o6v_A          311 ---------------------------------LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT  353 (466)
T ss_dssp             ---------------------------------CSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred             ---------------------------------CCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence                                             4899999999997766  78999999999999999964  4689999


Q ss_pred             CCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360          790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       790 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999998887  89999999999999999984

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=6.7e-33  Score=316.26  Aligned_cols=192  Identities=23%  Similarity=0.384  Sum_probs=138.4

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|.+++..+  +..+++|+.|++++|++++.  ..+..+++|++|++++|.+++..+  +..+++|+.|+
T Consensus       198 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  271 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  271 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             CCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEE
Confidence            4566666666666666444  55567777777777776642  346667777777777777776544  66777777777


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|++++ ++. +. .+++|+.|++++|++.+..+  +..+++|+.|++++|++++..|  +..+++            
T Consensus       272 l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~------------  332 (466)
T 1o6v_A          272 LGANQISN-ISP-LA-GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK------------  332 (466)
T ss_dssp             CCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT------------
T ss_pred             CCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc------------
Confidence            77777774 333 33 67778888888887776544  6677888888888888876554  334333            


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                      |+.|++++|++++.  ..+..+++|+.|++++|++++.+|  +..+++
T Consensus       333 --------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~  376 (466)
T 1o6v_A          333 --------------------------------LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR  376 (466)
T ss_dssp             --------------------------------CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             --------------------------------CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCC
Confidence                                            47888888888764  468888999999999999987776  788899


Q ss_pred             CCEEeccCCcCcc
Q 002360          791 IESLDFSANQLSG  803 (931)
Q Consensus       791 L~~LdLs~N~l~~  803 (931)
                      |+.|++++|++++
T Consensus       377 L~~L~l~~n~~~~  389 (466)
T 1o6v_A          377 ITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCCEEEEC
T ss_pred             CCEEeccCCcccC
Confidence            9999999999886

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.1e-33  Score=320.77  Aligned_cols=348  Identities=18%  Similarity=0.173  Sum_probs=248.6

Q ss_pred             cEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCC
Q 002360          348 ESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA  427 (931)
Q Consensus       348 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  427 (931)
                      +.++.++++++. +|..+  .++++.|++++|.+.+..+..|..+++|++|+|++|.+++..+. .|             
T Consensus        14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~-------------   76 (477)
T 2id5_A           14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AF-------------   76 (477)
T ss_dssp             TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TT-------------
T ss_pred             CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hh-------------
Confidence            466666666643 33333  24677777777777766666677777777777777766533222 22             


Q ss_pred             ceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCC
Q 002360          428 NSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGV  507 (931)
Q Consensus       428 n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  507 (931)
                                 ..+++|++|++++|.+....+..+..+++|++|++++|++.+..+..                      
T Consensus        77 -----------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----------------------  123 (477)
T 2id5_A           77 -----------NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM----------------------  123 (477)
T ss_dssp             -----------TTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT----------------------
T ss_pred             -----------hCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhH----------------------
Confidence                       22333344444444444333334444445555555544443322211                      


Q ss_pred             CCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCc
Q 002360          508 PKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN  587 (931)
Q Consensus       508 p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  587 (931)
                                                              +..+++|+.|++++|.+++..+..|..+++|+.|++++|+
T Consensus       124 ----------------------------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  163 (477)
T 2id5_A          124 ----------------------------------------FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN  163 (477)
T ss_dssp             ----------------------------------------TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred             ----------------------------------------ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence                                                    1235778888888888888888888888899999999998


Q ss_pred             ceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCc
Q 002360          588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI  667 (931)
Q Consensus       588 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~  667 (931)
                      +++..+..+..+++|+.|++++|.+.+..+..|..+++|+.|++++|+..+.+|...+ ...+|+.|++++|++++..+.
T Consensus       164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~  242 (477)
T 2id5_A          164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYL  242 (477)
T ss_dssp             CSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHH
T ss_pred             CcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHH
Confidence            8866666788888999999999998888888888889999999999888888888776 466899999999998865556


Q ss_pred             ccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEE
Q 002360          668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID  747 (931)
Q Consensus       668 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Ld  747 (931)
                      .+..+++|+.|+|++|++++..+..|.++++|                                            +.|+
T Consensus       243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------------------~~L~  278 (477)
T 2id5_A          243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRL--------------------------------------------QEIQ  278 (477)
T ss_dssp             HHTTCTTCCEEECCSSCCCEECTTSCTTCTTC--------------------------------------------CEEE
T ss_pred             HhcCccccCeeECCCCcCCccChhhccccccC--------------------------------------------CEEE
Confidence            78889999999999999987777777666555                                            7899


Q ss_pred             cccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360          748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       748 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      |++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++.-+.. .-...+..+++.++...|
T Consensus       279 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~~~~C  357 (477)
T 2id5_A          279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQQPTC  357 (477)
T ss_dssp             CCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTCCCBE
T ss_pred             CCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH-hHHhhhhccccCccCcee
Confidence            9999999888999999999999999999999777778889999999999999998653321 112234445666676666


Q ss_pred             cCCC
Q 002360          828 EIPS  831 (931)
Q Consensus       828 ~ip~  831 (931)
                      .-|.
T Consensus       358 ~~p~  361 (477)
T 2id5_A          358 ATPE  361 (477)
T ss_dssp             EESG
T ss_pred             CCch
Confidence            5553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.4e-31  Score=298.17  Aligned_cols=267  Identities=21%  Similarity=0.200  Sum_probs=149.9

Q ss_pred             cCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCC
Q 002360           90 LELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSL  169 (931)
Q Consensus        90 ~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~  169 (931)
                      ..++++++|+++++.++.. -+..+..+++|++|+|++|.+.+..+.+|.++++|++|++++|.+..++...  +.++  
T Consensus        42 ~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l--  116 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNV--  116 (390)
T ss_dssp             GGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTC--
T ss_pred             cccCCceEEEecCCchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCC--
Confidence            4578999999999998854 2345789999999999999998777788999999999999998877665433  3444  


Q ss_pred             CCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEc
Q 002360          170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL  249 (931)
Q Consensus       170 L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  249 (931)
                                              ++|++|++++|.+..+++..+.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus       117 ------------------------~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  172 (390)
T 3o6n_A          117 ------------------------PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL  172 (390)
T ss_dssp             ------------------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred             ------------------------CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence                                    44444444455555444444555555555555555555444445555555555555


Q ss_pred             CCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCC
Q 002360          250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS  329 (931)
Q Consensus       250 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~  329 (931)
                      ++|++++..   +..+++|+.|++++|.+.+      +...++|++|++++| .+... |.  ...++|+.|++++|.++
T Consensus       173 ~~n~l~~~~---~~~l~~L~~L~l~~n~l~~------~~~~~~L~~L~l~~n-~l~~~-~~--~~~~~L~~L~l~~n~l~  239 (390)
T 3o6n_A          173 SSNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVV-RG--PVNVELTILKLQHNNLT  239 (390)
T ss_dssp             CSSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCSSCSEEECCSS-CCCEE-EC--CCCSSCCEEECCSSCCC
T ss_pred             CCCcCCccc---cccccccceeecccccccc------cCCCCcceEEECCCC-eeeec-cc--cccccccEEECCCCCCc
Confidence            555554431   3344555555555555432      222334555555555 33222 11  11234444444444443


Q ss_pred             CcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCC
Q 002360          330 QDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN  406 (931)
Q Consensus       330 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  406 (931)
                      +.  ..+..+     ++|++|++++|.+.+..|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|++.
T Consensus       240 ~~--~~l~~l-----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          240 DT--AWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             CC--GGGGGC-----TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             cc--HHHcCC-----CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence            32  122222     444555555554444444444445555555555554442 2333344445555555555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.6e-32  Score=301.47  Aligned_cols=332  Identities=19%  Similarity=0.220  Sum_probs=231.2

Q ss_pred             CCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360          368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL  447 (931)
Q Consensus       368 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  447 (931)
                      +++++.|++++|.+....+..+..+++|++|++++|.+++                         .....+..+++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-------------------------~~~~~~~~l~~L~~L   98 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------------------------IDTYAFAYAHTIQKL   98 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-------------------------ECTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-------------------------cChhhccCCCCcCEE
Confidence            4566666666666654333335556666666666666542                         222334444555556


Q ss_pred             EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCcccc
Q 002360          448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS  527 (931)
Q Consensus       448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~  527 (931)
                      ++++|.+.+..|..+..+++|++|++++|+++.. |...+                                        
T Consensus        99 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~----------------------------------------  137 (390)
T 3o6n_A           99 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIF----------------------------------------  137 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT----------------------------------------
T ss_pred             ECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHh----------------------------------------
Confidence            6666666655566666666666666666665532 21111                                        


Q ss_pred             EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEc
Q 002360          528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL  607 (931)
Q Consensus       528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  607 (931)
                                           ..+++|++|++++|++++..+..|..+++|++|++++|++++.   .+..+++|++|++
T Consensus       138 ---------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l  193 (390)
T 3o6n_A          138 ---------------------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  193 (390)
T ss_dssp             ---------------------TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred             ---------------------cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence                                 2246777778888877777777788888888888888888754   2556778888888


Q ss_pred             cCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc
Q 002360          608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG  687 (931)
Q Consensus       608 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  687 (931)
                      ++|.+++.     ...++|+.|++++|.+. .+|..   ..++|+.|++++|.+++.  ..+..+++|+.|++++|++++
T Consensus       194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          194 SYNLLSTL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             CSSCCSEE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             cccccccc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence            88887643     33467888888888887 44543   357888888888888754  467788889999999999888


Q ss_pred             ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360          688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL  767 (931)
Q Consensus       688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L  767 (931)
                      ..|..+.++++|                                            +.|+|++|++++ +|..+..+++|
T Consensus       263 ~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~-~~~~~~~l~~L  297 (390)
T 3o6n_A          263 IMYHPFVKMQRL--------------------------------------------ERLYISNNRLVA-LNLYGQPIPTL  297 (390)
T ss_dssp             EESGGGTTCSSC--------------------------------------------CEEECCSSCCCE-EECSSSCCTTC
T ss_pred             cChhHccccccC--------------------------------------------CEEECCCCcCcc-cCcccCCCCCC
Confidence            878777766655                                            788999999884 56677889999


Q ss_pred             CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-
Q 002360          768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-  846 (931)
Q Consensus       768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-  846 (931)
                      ++|+|++|+++ .+|..++.+++|+.|++++|+++.. |  +..+++|++|++++|++++.... ..+..+....+.++ 
T Consensus       298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~  372 (390)
T 3o6n_A          298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDAD  372 (390)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCC
T ss_pred             CEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccC
Confidence            99999999998 6787888999999999999999854 3  67788999999999999885322 12333444444444 


Q ss_pred             CCCC
Q 002360          847 DLCG  850 (931)
Q Consensus       847 ~l~~  850 (931)
                      ..|.
T Consensus       373 ~~c~  376 (390)
T 3o6n_A          373 QHCK  376 (390)
T ss_dssp             SCCC
T ss_pred             ceec
Confidence            4444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.8e-32  Score=316.45  Aligned_cols=334  Identities=19%  Similarity=0.206  Sum_probs=242.5

Q ss_pred             CCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360          368 FKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL  447 (931)
Q Consensus       368 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  447 (931)
                      +.+++.+++++|.+....+..+..+++|++|++++|.+++                         ..+..+..+++|+.|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-------------------------~~~~~~~~l~~L~~L  104 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-------------------------IDTYAFAYAHTIQKL  104 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-------------------------ECTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-------------------------CChHHhcCCCCCCEE
Confidence            3455666666666554444445555666666666665543                         222233444455555


Q ss_pred             EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCcccc
Q 002360          448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGS  527 (931)
Q Consensus       448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~  527 (931)
                      ++++|.+.+..|..+..+++|+.|++++|.+++..+..+                                         
T Consensus       105 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-----------------------------------------  143 (597)
T 3oja_B          105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIF-----------------------------------------  143 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-----------------------------------------
T ss_pred             ECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHh-----------------------------------------
Confidence            555555555555555666666666666665553222111                                         


Q ss_pred             EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEc
Q 002360          528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL  607 (931)
Q Consensus       528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  607 (931)
                                           +.+++|++|++++|.+++..|..|..+++|++|++++|.+++.   .+..+++|+.|++
T Consensus       144 ---------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l  199 (597)
T 3oja_B          144 ---------------------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV  199 (597)
T ss_dssp             ---------------------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred             ---------------------ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence                                 2256788888888888887777888888888888888888854   2556788888999


Q ss_pred             cCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccc
Q 002360          608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLG  687 (931)
Q Consensus       608 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~  687 (931)
                      ++|.+++.     ...++|+.|++++|.+. .+|..+   .++|+.|++++|.+++  +..+..+++|+.|+|++|.+.+
T Consensus       200 ~~n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          200 SYNLLSTL-----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             CSSCCSEE-----ECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred             ccCccccc-----cCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence            88888753     34567889999999887 455432   4689999999999886  3678889999999999999998


Q ss_pred             ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC
Q 002360          688 TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL  767 (931)
Q Consensus       688 ~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L  767 (931)
                      ..|..|++++.|                                            +.|+|++|.+++ +|..+..+++|
T Consensus       269 ~~~~~~~~l~~L--------------------------------------------~~L~Ls~N~l~~-l~~~~~~l~~L  303 (597)
T 3oja_B          269 IMYHPFVKMQRL--------------------------------------------ERLYISNNRLVA-LNLYGQPIPTL  303 (597)
T ss_dssp             EESGGGTTCSSC--------------------------------------------CEEECTTSCCCE-EECSSSCCTTC
T ss_pred             CCHHHhcCccCC--------------------------------------------CEEECCCCCCCC-CCcccccCCCC
Confidence            888888776665                                            789999999985 57778889999


Q ss_pred             CEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-
Q 002360          768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-  846 (931)
Q Consensus       768 ~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-  846 (931)
                      +.|+|++|.++ .+|..++.+++|+.|+|++|++++. |  +..+++|++|++++|+++|..+. ..+..+....+.++ 
T Consensus       304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~  378 (597)
T 3oja_B          304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDAD  378 (597)
T ss_dssp             CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCC
T ss_pred             cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhcccccc
Confidence            99999999999 7888899999999999999999865 3  67788999999999999987432 23555556667777 


Q ss_pred             CCCCCC
Q 002360          847 DLCGAP  852 (931)
Q Consensus       847 ~l~~~~  852 (931)
                      ..|+.+
T Consensus       379 ~~C~~~  384 (597)
T 3oja_B          379 QHCKID  384 (597)
T ss_dssp             CCCCTT
T ss_pred             ccCCcc
Confidence            677754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.7e-30  Score=284.88  Aligned_cols=215  Identities=23%  Similarity=0.355  Sum_probs=136.7

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|+.|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|++
T Consensus       132 ~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l  206 (347)
T 4fmz_A          132 TKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA  206 (347)
T ss_dssp             TTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred             CceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeec
Confidence            445555555553333222 25555666666666666553322  5566666666666666664433  566666666666


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|.+.+ ++. + ..+++|++|++++|++++..+  +..+++|+.|++++|++++.  +.+..++              
T Consensus       207 ~~n~l~~-~~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~--------------  265 (347)
T 4fmz_A          207 YVNQITD-ITP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLT--------------  265 (347)
T ss_dssp             CSSCCCC-CGG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCT--------------
T ss_pred             ccCCCCC-Cch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCC--------------
Confidence            6666663 222 2 256677777777777664433  66677777777777776642  2233322              


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                    .|+.|++++|++++.  +.+..+++|++|++++|++++..|..++.+++|
T Consensus       266 ------------------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          266 ------------------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             ------------------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             ------------------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence                                          346777777777753  357778888888888888887777778888888


Q ss_pred             CEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360          792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       792 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      +.|++++|++++..|  +..+++|++|++++|+++
T Consensus       314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888888888887666  777888888888888775

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.4e-30  Score=304.24  Aligned_cols=265  Identities=21%  Similarity=0.202  Sum_probs=153.9

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL  170 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  170 (931)
                      .+++++.+++++|.+... .+..+..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+..++...         
T Consensus        49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------  118 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV---------  118 (597)
T ss_dssp             GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT---------
T ss_pred             cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH---------
Confidence            478899999999999864 3456789999999999999999888889999999999999988877665443         


Q ss_pred             CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcC
Q 002360          171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY  250 (931)
Q Consensus       171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  250 (931)
                                         ++.+++|++|++++|.+..+++..|.++++|++|++++|.+.+..|..|+.+++|++|+++
T Consensus       119 -------------------~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  179 (597)
T 3oja_B          119 -------------------FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS  179 (597)
T ss_dssp             -------------------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT
T ss_pred             -------------------HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc
Confidence                               3345555555555555555555555666666666666666665555566666666666666


Q ss_pred             CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCC
Q 002360          251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ  330 (931)
Q Consensus       251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  330 (931)
                      +|.+++..   ++.+++|+.|++++|.+.+      +...++|++|++++| .+....+..   .++|+.|++++|.+++
T Consensus       180 ~N~l~~~~---~~~l~~L~~L~l~~n~l~~------l~~~~~L~~L~ls~n-~l~~~~~~~---~~~L~~L~L~~n~l~~  246 (597)
T 3oja_B          180 SNRLTHVD---LSLIPSLFHANVSYNLLST------LAIPIAVEELDASHN-SINVVRGPV---NVELTILKLQHNNLTD  246 (597)
T ss_dssp             TSCCSBCC---GGGCTTCSEEECCSSCCSE------EECCTTCSEEECCSS-CCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred             CCCCCCcC---hhhhhhhhhhhcccCcccc------ccCCchhheeeccCC-ccccccccc---CCCCCEEECCCCCCCC
Confidence            66665542   3445566666666665542      233345556666555 333221111   1234444444444433


Q ss_pred             cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcC
Q 002360          331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL  405 (931)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l  405 (931)
                      .  ..+..+     ++|+.|++++|.+.+..|..++.+++|++|+|++|.+.+ +|..+..+++|++|+|++|.+
T Consensus       247 ~--~~l~~l-----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          247 T--AWLLNY-----PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             C--GGGGGC-----TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC
T ss_pred             C--hhhccC-----CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC
Confidence            1  222222     344444444444444444444444444444444444442 233333344444444444444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.1e-29  Score=278.31  Aligned_cols=306  Identities=25%  Similarity=0.304  Sum_probs=236.7

Q ss_pred             ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360           89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS  168 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~  168 (931)
                      +..+++|++|+++++.+..  ++ .+..+++|++|++++|.+++ +|. +.++++|++|++++|.+..++    .+.+++
T Consensus        40 ~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~~----~~~~l~  110 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDIS----ALQNLT  110 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCG----GGTTCT
T ss_pred             chhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCch----HHcCCC
Confidence            4578889999999988874  34 37888999999999998874 444 888999999999988877654    378888


Q ss_pred             CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360          169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD  248 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  248 (931)
                      +|++|++++|.++..+.    +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       111 ~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          111 NLRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             TCSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             cCCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            89999998888887654    6788889999998886555444 37888889999999888875433  77888899999


Q ss_pred             cCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcC
Q 002360          249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKL  328 (931)
Q Consensus       249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l  328 (931)
                      +++|.+.+..+  +..+++|+.|++++|.+.+..+   +..+++|++|++++| .+.+..+  +..+++|+.|++++|.+
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCcc
Confidence            99888876544  7788888999998888864322   677888888888888 6665443  77888888888888887


Q ss_pred             CCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCc
Q 002360          329 SQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT  408 (931)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  408 (931)
                      ++.  ..+..+     ++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..++.+++|++|++++|++++.
T Consensus       256 ~~~--~~~~~l-----~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          256 SDI--NAVKDL-----TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             CCC--GGGTTC-----TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             CCC--hhHhcC-----CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            763  234444     7888888888888765  3577788888888888888877777888888888888888888765


Q ss_pred             cchhhhccccccceeccCCcee
Q 002360          409 VSEIHFVNLTKLVSFLANANSL  430 (931)
Q Consensus       409 ~~~~~~~~l~~L~~L~l~~n~l  430 (931)
                      .+   +..+++|+.+++++|.+
T Consensus       327 ~~---~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          327 RP---LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GG---GGGCTTCSEESSSCC--
T ss_pred             cC---hhhhhccceeehhhhcc
Confidence            54   66677777777777654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=5.6e-33  Score=317.65  Aligned_cols=288  Identities=20%  Similarity=0.191  Sum_probs=132.6

Q ss_pred             cCccEEEcCCccccccccc-ccCCCCCCCEEeccCCcCCc----CccccccCCCCCCEEEccCCcCCCccchhhhccccc
Q 002360          345 YELESLYLRGCQIFGHLTN-QLGQFKRLNFLGLSNNQMDG----SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTK  419 (931)
Q Consensus       345 ~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  419 (931)
                      ++|++|++++|+++..... .+..+++|++|++++|.+.+    .++..+..+++|++|++++|.+........+..++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4455566655555433222 24455666666666666553    234445555666666666666543222111111110


Q ss_pred             cceeccCCceeEEecCCCCCCCccccEEEccCCCCCC----CcChhhhccCCCcEEeCCCCCCCCCcchhHHhcc----c
Q 002360          420 LVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP----RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSI----F  491 (931)
Q Consensus       420 L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~----~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~----~  491 (931)
                                          ...+|++|++++|.++.    .++..+..+++|++|++++|++++..+..+...+    +
T Consensus        83 --------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           83 --------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             --------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             --------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence                                00134445555554442    3455666677777777777777654444433321    1


Q ss_pred             cceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCc
Q 002360          492 QYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDC  571 (931)
Q Consensus       492 ~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  571 (931)
                      +|++|++++|                                 .+++.....++..+..+++|++|++++|.+++..+..
T Consensus       143 ~L~~L~L~~n---------------------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  189 (461)
T 1z7x_W          143 RLEKLQLEYC---------------------------------SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV  189 (461)
T ss_dssp             CCCEEECTTS---------------------------------CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred             cceEEECCCC---------------------------------CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence            2333333333                                 3333222222222223455555555555554432222


Q ss_pred             cc-----CCCCCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCcccc-----chhhccCCCCcEEecCCCccc
Q 002360          572 WM-----NWPRLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGVI-----PTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       572 ~~-----~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-----p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      +.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.++...     +..+..+++|++|++++|.++
T Consensus       190 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~  269 (461)
T 1z7x_W          190 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGIT  269 (461)
T ss_dssp             HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            21     133555555555555432    2334444555555555555554322     111223455555555555554


Q ss_pred             cc----CchhHHhhcCcCcEEEccCccccccCCcccC-----CCCCcCEEEccCCccc
Q 002360          638 GS----IPTWIGERFSRLMILILRSNKFHGDFPIQLC-----RLASLQILDVAYNSLL  686 (931)
Q Consensus       638 ~~----~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~Ls~N~l~  686 (931)
                      +.    ++..+. .+++|++|++++|.+.+..+..+.     ..++|+.|++++|.++
T Consensus       270 ~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  326 (461)
T 1z7x_W          270 AKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT  326 (461)
T ss_dssp             HHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc
Confidence            32    333332 345555555555555433222111     1245555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-32  Score=314.66  Aligned_cols=367  Identities=17%  Similarity=0.150  Sum_probs=252.9

Q ss_pred             CCCCEEeccCCcCCcCcccc-ccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEE
Q 002360          369 KRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVL  447 (931)
Q Consensus       369 ~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  447 (931)
                      ++|++|++++|.+....... +..+++|++|++++|+++.....                                    
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~------------------------------------   46 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK------------------------------------   46 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHH------------------------------------
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHH------------------------------------
Confidence            45677777777776443222 56677777777777776532111                                    


Q ss_pred             EccCCCCCCCcChhhhccCCCcEEeCCCCCCCCCcchhHHhccc----cceEEeccCccccc----CCCCCCCCCCCccc
Q 002360          448 ELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF----QYYYLNVSGNQIYG----GVPKFDSPSMPLII  519 (931)
Q Consensus       448 ~L~~~~l~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~----~L~~L~ls~n~l~~----~~p~~~~~~~~~~~  519 (931)
                               .++..+..+++|++|++++|++.+..+..+...++    +|++|++++|.++.    .++.         .
T Consensus        47 ---------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~---------~  108 (461)
T 1z7x_W           47 ---------DISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS---------T  108 (461)
T ss_dssp             ---------HHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH---------H
T ss_pred             ---------HHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH---------H
Confidence                     12233344455555555555554443444444333    45555555555442    1111         1


Q ss_pred             CCCCccccEEEcccCCCccccchhhhccC-CCCCCccEEECcCCccccc----cCCcccCCCCCCEEecCCCcceecCCC
Q 002360          520 TPSLLLGSIFDLSNNALSGSIFHLICQGE-NFSKNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTGSLPM  594 (931)
Q Consensus       520 ~~~~~~l~~l~ls~n~l~~~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p~  594 (931)
                      ....+.++.+++++|.+++..+..++..+ ...++|++|++++|++++.    ++..+..+++|++|++++|.+....+.
T Consensus       109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  188 (461)
T 1z7x_W          109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVR  188 (461)
T ss_dssp             TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred             HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHH
Confidence            11225666777777776655544444332 2246799999999999874    355667789999999999998755443


Q ss_pred             ccc-----CCCCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCc----hhHHhhcCcCcEEEccCccc
Q 002360          595 SIG-----TLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIP----TWIGERFSRLMILILRSNKF  661 (931)
Q Consensus       595 ~~~-----~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~~l~~L~~L~L~~n~l  661 (931)
                      .+.     ..++|++|++++|.++..    ++..+..+++|+.|++++|++.+...    ..+...+++|++|++++|.+
T Consensus       189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            332     366999999999999874    57778889999999999999875432    22222478999999999998


Q ss_pred             ccc----CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhh
Q 002360          662 HGD----FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYN  737 (931)
Q Consensus       662 ~~~----~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  737 (931)
                      +..    ++..+..+++|+.|++++|++.+..+..+...-                                       .
T Consensus       269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---------------------------------------~  309 (461)
T 1z7x_W          269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL---------------------------------------L  309 (461)
T ss_dssp             CHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH---------------------------------------T
T ss_pred             CHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh---------------------------------------c
Confidence            865    566777789999999999998755444332210                                       0


Q ss_pred             hhccceeEEEcccCccccc----CCccccCCCCCCEEEccCCcCcccCCcCccC-----cCCCCEEeccCCcCcc----c
Q 002360          738 SILNLVRSIDISMNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-----MRSIESLDFSANQLSG----Q  804 (931)
Q Consensus       738 ~~~~~L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-----l~~L~~LdLs~N~l~~----~  804 (931)
                      ...+.|+.|+|++|.+++.    ++..+..+++|++|+|++|++++..+..+..     .++|++|++++|++++    .
T Consensus       310 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  389 (461)
T 1z7x_W          310 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS  389 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred             cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence            0123569999999999865    5677788899999999999998766655543     6799999999999997    7


Q ss_pred             CcccccCCCCCCeeeCCCcccccc
Q 002360          805 IPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       805 ~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +|..+..+++|++||+++|++++.
T Consensus       390 l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          390 LAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHhCCCccEEECCCCCCCHH
Confidence            899999999999999999999764

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=8.4e-29  Score=268.98  Aligned_cols=222  Identities=19%  Similarity=0.250  Sum_probs=142.3

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCcc--ccchhhccCCCCcE
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG--VIPTSFKNFSILEA  628 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~  628 (931)
                      +++|++|++++|+++. +|..+.  ++|++|++++|++++..+..+.++++|++|++++|.+..  ..+..+.++++|++
T Consensus        99 l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~  175 (330)
T 1xku_A           99 LVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  175 (330)
T ss_dssp             CTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             CCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence            4556666666666654 333322  466666666666665555556666666677776666643  55566666777777


Q ss_pred             EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCC
Q 002360          629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS  708 (931)
Q Consensus       629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  708 (931)
                      |++++|.++ .+|..+   .++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|         
T Consensus       176 L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------  242 (330)
T 1xku_A          176 IRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL---------  242 (330)
T ss_dssp             EECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC---------
T ss_pred             EECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC---------
Confidence            777777766 455543   2567777777777776666677777777777777777776655555554444         


Q ss_pred             ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC-
Q 002360          709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-  787 (931)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~-  787 (931)
                                                         +.|+|++|+++ .+|..+..+++|++|++++|++++..+..|.. 
T Consensus       243 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~  286 (330)
T 1xku_A          243 -----------------------------------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP  286 (330)
T ss_dssp             -----------------------------------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred             -----------------------------------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCc
Confidence                                               66777777776 66667777777777777777777655555543 


Q ss_pred             -----cCCCCEEeccCCcCcc--cCcccccCCCCCCeeeCCCcc
Q 002360          788 -----MRSIESLDFSANQLSG--QIPQSMSNLSFLNYLNLSNNN  824 (931)
Q Consensus       788 -----l~~L~~LdLs~N~l~~--~~p~~l~~l~~L~~L~ls~N~  824 (931)
                           .++|+.|++++|++..  ..|..|..+..++.+++++|+
T Consensus       287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence                 2567777777777753  455667777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=4.8e-29  Score=271.06  Aligned_cols=221  Identities=20%  Similarity=0.258  Sum_probs=168.1

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCc--cccchhhccCCCCcE
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLS--GVIPTSFKNFSILEA  628 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~  628 (931)
                      +++|++|++++|+++. +|..+.  ++|++|++++|++++..+..|.++++|++|++++|.++  +..|..+..+ +|+.
T Consensus       101 l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~  176 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY  176 (332)
T ss_dssp             CTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred             cCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence            4556666666666654 333332  56777777777777555555777777777777777775  3566667666 7888


Q ss_pred             EecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCC
Q 002360          629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS  708 (931)
Q Consensus       629 L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  708 (931)
                      |++++|+++ .+|..+   .++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+..+++|         
T Consensus       177 L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------  243 (332)
T 2ft3_A          177 LRISEAKLT-GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL---------  243 (332)
T ss_dssp             CBCCSSBCS-SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC---------
T ss_pred             EECcCCCCC-ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC---------
Confidence            888888887 477654   3688888899998888777888889999999999999987777677665555         


Q ss_pred             ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCc
Q 002360          709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM  788 (931)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  788 (931)
                                                         +.|+|++|+++ .+|..+..+++|++|++++|++++..+..|...
T Consensus       244 -----------------------------------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          244 -----------------------------------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             -----------------------------------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             -----------------------------------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence                                               88999999998 788889999999999999999997777777653


Q ss_pred             ------CCCCEEeccCCcCc--ccCcccccCCCCCCeeeCCCcc
Q 002360          789 ------RSIESLDFSANQLS--GQIPQSMSNLSFLNYLNLSNNN  824 (931)
Q Consensus       789 ------~~L~~LdLs~N~l~--~~~p~~l~~l~~L~~L~ls~N~  824 (931)
                            .+|+.|++++|++.  +..|..|..++.|+.+++++|+
T Consensus       288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence                  67899999999988  6778889999999999999885

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.4e-30  Score=278.39  Aligned_cols=278  Identities=17%  Similarity=0.229  Sum_probs=185.5

Q ss_pred             CCCCHHHHHHHHHhhhcC-CCCCCCCCCCC---CCCCCCcCccceEecC--------CCCcEEEEEcCCCCCCCchhhhc
Q 002360           10 TSCIESEREALLKLKHDL-RDPSHRLASWI---GDNGDCCKWGGVLCGN--------FTGHVLELNLQNPFSPDDNEAYQ   77 (931)
Q Consensus        10 ~~~~~~~~~~ll~~k~~~-~d~~~~l~~w~---~~~~~~c~w~g~~c~~--------~~~~v~~L~l~~~~~~~~~~~~~   77 (931)
                      ..+..+|++||++||..+ .|+.+.++.|.   ....++|.|.|+.|..        ...+|++|+++++          
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n----------   91 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV----------   91 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESS----------
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCC----------
Confidence            356778999999999988 47766678894   2577899999999952        3468899999885          


Q ss_pred             ccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCc-ccc
Q 002360           78 RSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY-FEL  156 (931)
Q Consensus        78 ~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~-~~~  156 (931)
                        .+ ..+|..+.++++|++|+|++|.++  .+|..++.+++|++|+|++|.+. .+|..++++++|++|++++|. ...
T Consensus        92 --~l-~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~  165 (328)
T 4fcg_A           92 --PL-PQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE  165 (328)
T ss_dssp             --CC-SSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred             --Cc-hhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence              44 378888888999999999999988  47888899999999999999988 788889999999999999865 344


Q ss_pred             cccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcc
Q 002360          157 HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPS  236 (931)
Q Consensus       157 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  236 (931)
                      +|..+...         .+           ...+..+++|++|++++|.++.++ ..+.++++|++|++++|.+.+ +|.
T Consensus       166 ~p~~~~~~---------~~-----------~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~-l~~  223 (328)
T 4fcg_A          166 LPEPLAST---------DA-----------SGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSA-LGP  223 (328)
T ss_dssp             CCSCSEEE---------C------------CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCC-CCG
T ss_pred             cChhHhhc---------cc-----------hhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCc-Cch
Confidence            55544210         00           001233455555555555555332 235555555555555555552 344


Q ss_pred             cccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCC
Q 002360          237 RLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLC  316 (931)
Q Consensus       237 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  316 (931)
                      .++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++| .+.+.+|..+++++
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n-~~~~~iP~~l~~L~  301 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGC-VNLSRLPSLIAQLP  301 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEECTTC-TTCCCCCGGGGGSC
T ss_pred             hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEeCCCC-CchhhccHHHhhcc
Confidence            4555555555555555555555555555566666666665555555554 555666666666666 55556666666666


Q ss_pred             CCcEEEcCCCc
Q 002360          317 KLTSFSMASTK  327 (931)
Q Consensus       317 ~L~~L~l~~~~  327 (931)
                      +|+.+++..+.
T Consensus       302 ~L~~l~l~~~~  312 (328)
T 4fcg_A          302 ANCIILVPPHL  312 (328)
T ss_dssp             TTCEEECCGGG
T ss_pred             CceEEeCCHHH
Confidence            66666665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=3.2e-28  Score=264.34  Aligned_cols=226  Identities=19%  Similarity=0.264  Sum_probs=191.7

Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .+++|++|++++|++++..|..|..+++|++|++++|+++ .+|..+.  ++|++|++++|.+++..+..+.++++|++|
T Consensus        74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  150 (330)
T 1xku_A           74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVV  150 (330)
T ss_dssp             TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEE
Confidence            3678999999999999888889999999999999999998 5666554  789999999999998888889999999999


Q ss_pred             ecCCCcccc--cCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCC
Q 002360          630 DVGENELVG--SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQ  707 (931)
Q Consensus       630 ~L~~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~  707 (931)
                      ++++|++..  ..+..+. .+++|++|++++|.++. +|..+.  ++|+.|++++|++++..|..+.++++|        
T Consensus       151 ~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L--------  218 (330)
T 1xku_A          151 ELGTNPLKSSGIENGAFQ-GMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL--------  218 (330)
T ss_dssp             ECCSSCCCGGGBCTTGGG-GCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC--------
T ss_pred             ECCCCcCCccCcChhhcc-CCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC--------
Confidence            999999853  4555554 78999999999999884 555543  789999999999998878777766655        


Q ss_pred             CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360          708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  787 (931)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  787 (931)
                                                          +.|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..
T Consensus       219 ------------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          219 ------------------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             ------------------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             ------------------------------------CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence                                                88999999999888888999999999999999998 88888999


Q ss_pred             cCCCCEEeccCCcCcccCcccccCC------CCCCeeeCCCccccc
Q 002360          788 MRSIESLDFSANQLSGQIPQSMSNL------SFLNYLNLSNNNLNG  827 (931)
Q Consensus       788 l~~L~~LdLs~N~l~~~~p~~l~~l------~~L~~L~ls~N~l~g  827 (931)
                      +++|++|++++|++++..+..|...      +.|+.+++++|++..
T Consensus       262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~  307 (330)
T 1xku_A          262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  307 (330)
T ss_dssp             CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence            9999999999999998777776543      678899999998863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=6.4e-28  Score=262.16  Aligned_cols=289  Identities=20%  Similarity=0.214  Sum_probs=165.8

Q ss_pred             cCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCe
Q 002360           93 KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEH  172 (931)
Q Consensus        93 ~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~  172 (931)
                      .++++++++++.++  .+|..+.  ++|++|++++|.+.+..|.+|.++++|++|++++|.+..++..  .+.++++|++
T Consensus        33 c~l~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~  106 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK--AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK--AFSPLRKLQK  106 (332)
T ss_dssp             EETTEEECCSSCCS--SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG--GSTTCTTCCE
T ss_pred             ccCCEEECCCCCcc--ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh--HhhCcCCCCE
Confidence            36889999999888  4576553  6899999999998877778899999999999998887765332  2566677777


Q ss_pred             EEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCC--CCcccccCCCCCCEEEcC
Q 002360          173 LYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQG--QIPSRLGNLTSLKHLDLY  250 (931)
Q Consensus       173 L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~  250 (931)
                      |++++|.++.++...     .++|++|++++|.+..+++..+.++++|++|++++|.+..  ..+..+..+ +|++|+++
T Consensus       107 L~L~~n~l~~l~~~~-----~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          107 LYISKNHLVEIPPNL-----PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             EECCSSCCCSCCSSC-----CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             EECCCCcCCccCccc-----cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            777777666554321     1566666666666666665556666666666666666532  344445544 55666666


Q ss_pred             CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCCC
Q 002360          251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ  330 (931)
Q Consensus       251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  330 (931)
                      +|++++. |..+.  ++|++|++++|.+.+..+.. +..+++|++|++++| .+.+..+..+..++              
T Consensus       181 ~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~-l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~--------------  241 (332)
T 2ft3_A          181 EAKLTGI-PKDLP--ETLNELHLDHNKIQAIELED-LLRYSKLYRLGLGHN-QIRMIENGSLSFLP--------------  241 (332)
T ss_dssp             SSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTTS-STTCTTCSCCBCCSS-CCCCCCTTGGGGCT--------------
T ss_pred             CCCCCcc-Ccccc--CCCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCC-cCCcCChhHhhCCC--------------
Confidence            5555442 22221  45555555555554322222 445555555555555 44444444444444              


Q ss_pred             cchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccC------CCCCCEEEccCCc
Q 002360          331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQ------MANLESLDLSNNK  404 (931)
Q Consensus       331 ~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~L~~n~  404 (931)
                                     +|++|++++|++. .+|..+..+++|++|++++|.+++..+..|..      .++|+.|++++|.
T Consensus       242 ---------------~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          242 ---------------TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             ---------------TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             ---------------CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence                           4555555555544 33444455555555555555555443333332      2445555665555


Q ss_pred             CCC-ccchhhhccccccceeccCCc
Q 002360          405 LNG-TVSEIHFVNLTKLVSFLANAN  428 (931)
Q Consensus       405 l~~-~~~~~~~~~l~~L~~L~l~~n  428 (931)
                      +.. .++...|..+++|+.+++++|
T Consensus       306 ~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          306 VPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccCcccccccchhhhhhcccc
Confidence            541 223334555555555555554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=5.7e-28  Score=259.47  Aligned_cols=253  Identities=22%  Similarity=0.255  Sum_probs=215.2

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceec--CCCcccCCCCCC
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS--LPMSIGTLTSLR  603 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~  603 (931)
                      .+.++++++.++.. |..      ..+++++|++++|++++..+..|.++++|++|++++|+++..  .|..+..+++|+
T Consensus         9 ~~~l~c~~~~l~~i-p~~------~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~   81 (306)
T 2z66_A            9 GTEIRCNSKGLTSV-PTG------IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK   81 (306)
T ss_dssp             TTEEECCSSCCSSC-CSC------CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCC
T ss_pred             CCEEEcCCCCcccC-CCC------CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccC
Confidence            34566666655432 211      136899999999999986666789999999999999998833  366777899999


Q ss_pred             EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360          604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN  683 (931)
Q Consensus       604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  683 (931)
                      +|++++|.+.. +|..+..+++|++|++++|++++..+...+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus        82 ~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           82 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             EEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC
Confidence            99999999984 66678999999999999999985443233447999999999999999989999999999999999999


Q ss_pred             cccc-ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc
Q 002360          684 SLLG-TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT  762 (931)
Q Consensus       684 ~l~~-~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~  762 (931)
                      .+.+ .+|..+..+++|                                            +.|+|++|++++..|..+.
T Consensus       161 ~l~~~~~~~~~~~l~~L--------------------------------------------~~L~Ls~n~l~~~~~~~~~  196 (306)
T 2z66_A          161 SFQENFLPDIFTELRNL--------------------------------------------TFLDLSQCQLEQLSPTAFN  196 (306)
T ss_dssp             EEGGGEECSCCTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTT
T ss_pred             ccccccchhHHhhCcCC--------------------------------------------CEEECCCCCcCCcCHHHhc
Confidence            9987 577777766655                                            8999999999998899999


Q ss_pred             CCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCC-CCCeeeCCCccccccCC
Q 002360          763 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       763 ~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~g~ip  830 (931)
                      .+++|++|+|++|++++..+..+..+++|+.||+++|++++..|..+..++ +|++|++++|+++|.++
T Consensus       197 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             CCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            999999999999999987777899999999999999999999999999984 99999999999998754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=3e-28  Score=263.15  Aligned_cols=227  Identities=17%  Similarity=0.251  Sum_probs=200.0

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      .+.++.|++++|.++. +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchh-cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            3678999999999984 7777888999999999999999 88989999999999999999998 7788899999999999


Q ss_pred             cCCCcccccCchhHH--------hhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccccc
Q 002360          631 VGENELVGSIPTWIG--------ERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATA  702 (931)
Q Consensus       631 L~~N~l~~~~p~~~~--------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  702 (931)
                      +++|++.+.+|..+.        ..+++|++|++++|+++ .+|..+..+++|+.|+|++|++++ +|+.++.+++|   
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L---  231 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL---  231 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC---
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC---
Confidence            999988888988764        13889999999999998 788889999999999999999984 56666665554   


Q ss_pred             CCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 002360          703 DSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP  782 (931)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  782 (931)
                                                               +.|+|++|++.+.+|..++.+++|++|+|++|++.+.+|
T Consensus       232 -----------------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          232 -----------------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             -----------------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             -----------------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence                                                     889999999999999999999999999999999999999


Q ss_pred             cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360          783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       783 ~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      ..++.+++|++|||++|++.+.+|..+.++++|+.+++..|.+.
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999998877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=4.3e-27  Score=267.11  Aligned_cols=251  Identities=23%  Similarity=0.238  Sum_probs=217.1

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL  605 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  605 (931)
                      ...+++++..++. +|..+      .++++.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|
T Consensus        56 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTRRGLSE-VPQGI------PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SCEEECCSSCCSS-CCSCC------CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEECCCCcCc-cCCCC------CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEE
Confidence            3456666666553 23222      3689999999999999989999999999999999999998888999999999999


Q ss_pred             EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcc-ccccCCcccCCCCCcCEEEccCCc
Q 002360          606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNK-FHGDFPIQLCRLASLQILDVAYNS  684 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~  684 (931)
                      +|++|++++..+..|.++++|++|++++|++. .+|...+..+++|+.|++++|+ +....+..+..+++|+.|+|++|+
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            99999999888888999999999999999998 5666555689999999999955 444444578999999999999999


Q ss_pred             cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      +++. | .+..+                                            +.|+.|+|++|++++..|..|.++
T Consensus       208 l~~~-~-~~~~l--------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l  241 (452)
T 3zyi_A          208 IKDM-P-NLTPL--------------------------------------------VGLEELEMSGNHFPEIRPGSFHGL  241 (452)
T ss_dssp             CSSC-C-CCTTC--------------------------------------------TTCCEEECTTSCCSEECGGGGTTC
T ss_pred             cccc-c-ccccc--------------------------------------------ccccEEECcCCcCcccCcccccCc
Confidence            9843 4 23333                                            345899999999999999999999


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      ++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|++++|++.|.+.
T Consensus       242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            999999999999999999999999999999999999998888889999999999999999988654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=7.1e-27  Score=264.32  Aligned_cols=251  Identities=22%  Similarity=0.219  Sum_probs=215.7

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL  605 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  605 (931)
                      ...+++++..+.. +|..+      .++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|
T Consensus        45 ~~~v~c~~~~l~~-iP~~~------~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           45 FSKVICVRKNLRE-VPDGI------STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTL  117 (440)
T ss_dssp             SCEEECCSCCCSS-CCSCC------CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEE
T ss_pred             CCEEEeCCCCcCc-CCCCC------CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEE
Confidence            3456666665553 22222      3689999999999999888999999999999999999998888899999999999


Q ss_pred             EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcc-ccccCCcccCCCCCcCEEEccCCc
Q 002360          606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNK-FHGDFPIQLCRLASLQILDVAYNS  684 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~  684 (931)
                      ++++|+++...+..|..+++|++|++++|++. .+|...+..+++|++|++++|+ +....+..+..+++|+.|+|++|+
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  196 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN  196 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc
Confidence            99999999888888999999999999999998 5665555589999999999955 444445578999999999999999


Q ss_pred             cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      ++ .+|. +..+                                            +.|+.|||++|++++..|..|.++
T Consensus       197 l~-~~~~-~~~l--------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l  230 (440)
T 3zyj_A          197 LR-EIPN-LTPL--------------------------------------------IKLDELDLSGNHLSAIRPGSFQGL  230 (440)
T ss_dssp             CS-SCCC-CTTC--------------------------------------------SSCCEEECTTSCCCEECTTTTTTC
T ss_pred             Cc-cccc-cCCC--------------------------------------------cccCEEECCCCccCccChhhhccC
Confidence            98 4442 3333                                            345899999999999999999999


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      ++|+.|+|++|++++..|..|..+++|+.|||++|++++..+..+..+++|+.|+|++|++.|.+.
T Consensus       231 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  296 (440)
T 3zyj_A          231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD  296 (440)
T ss_dssp             TTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred             ccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence            999999999999999999999999999999999999998888889999999999999999987653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=3.2e-27  Score=250.69  Aligned_cols=136  Identities=21%  Similarity=0.184  Sum_probs=71.7

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCc-CccccchhhccCCCCcEEe
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR-LSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~  630 (931)
                      ++++.|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++|. +....|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            455555555555555555555555555555555555555555555555555555555554 4444455555555555555


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT  688 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  688 (931)
                      +++|++++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus       112 l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A          112 LDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            555555533333332 455555555555555544444444555555555555555433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=3.3e-27  Score=253.54  Aligned_cols=235  Identities=20%  Similarity=0.239  Sum_probs=177.4

Q ss_pred             CCCccEEECcCCccccc--cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCc
Q 002360          551 SKNIEFLKLSTNHFSEG--IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILE  627 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~  627 (931)
                      +++|++|++++|+++..  .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|++++..+ ..+..+++|+
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  129 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI  129 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence            45666666666666532  2445556677777777777776 355567777777777777777776554 5677777888


Q ss_pred             EEecCCCcccccCchhHHhhcCcCcEEEccCccccc-cCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360          628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG-DFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD  706 (931)
Q Consensus       628 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  706 (931)
                      +|++++|.+.+..|..+. .+++|++|++++|.+++ .+|..+..+++|+.|++++|++++..|..+.++++|       
T Consensus       130 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------  201 (306)
T 2z66_A          130 YLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL-------  201 (306)
T ss_dssp             EEECTTSCCEECSTTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC-------
T ss_pred             EEECCCCcCCccchhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC-------
Confidence            888888887765555554 67888888888888876 577788888899999999999888777777666555       


Q ss_pred             CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360          707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  786 (931)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  786 (931)
                                                           +.|+|++|++++..+..+..+++|++|+|++|++++.+|..+.
T Consensus       202 -------------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  244 (306)
T 2z66_A          202 -------------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ  244 (306)
T ss_dssp             -------------------------------------CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred             -------------------------------------CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence                                                 7899999999887777889999999999999999999999999


Q ss_pred             Cc-CCCCEEeccCCcCcccCc--ccccCCCCCCeeeCCCccccccCCC
Q 002360          787 VM-RSIESLDFSANQLSGQIP--QSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       787 ~l-~~L~~LdLs~N~l~~~~p--~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      .+ ++|++|++++|++++..+  .....+...+.+.+..+.+.|..|.
T Consensus       245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~  292 (306)
T 2z66_A          245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS  292 (306)
T ss_dssp             CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred             hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence            98 499999999999987532  1122344556677778888888775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.3e-27  Score=262.23  Aligned_cols=258  Identities=19%  Similarity=0.213  Sum_probs=178.6

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|++|++++|++++..+..|.++++|++|++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            46777777777777655556777777777777777777666666777777777777777777655555677777777777


Q ss_pred             CCCcccccCch-hHHhhcCcCcEEEccCc-cccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          632 GENELVGSIPT-WIGERFSRLMILILRSN-KFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       632 ~~N~l~~~~p~-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      ++|+++ .+|. ..+..+++|++|++++| .+.+..+..+..+++|+.|++++|++++..|..+.++++|+.++...+..
T Consensus       132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            777776 4554 33335677777777776 35555556667777777777777777766676666666665443332211


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCcccc---CCCCCCEEEccCCcCcc----cCC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVT---NLQGLQSLNLSHNLFTG----RIP  782 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~----~ip  782 (931)
                      .                    .........++.|+.|++++|++++..+..+.   ....++.++|++|.+++    .+|
T Consensus       211 ~--------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~  270 (353)
T 2z80_A          211 I--------------------LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVM  270 (353)
T ss_dssp             T--------------------THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHH
T ss_pred             c--------------------cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhH
Confidence            0                    11112223466789999999999876555443   45678889999988876    477


Q ss_pred             cCccCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCCccccccCCC
Q 002360          783 DNIGVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       783 ~~l~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      ..++.+++|+.||+++|+++ .+|.. |..+++|++|++++|+++|.+|.
T Consensus       271 ~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~  319 (353)
T 2z80_A          271 KLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  319 (353)
T ss_dssp             HHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred             HHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence            78889999999999999999 55655 68999999999999999998773

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.8e-26  Score=244.84  Aligned_cols=230  Identities=21%  Similarity=0.207  Sum_probs=205.0

Q ss_pred             ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360          554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE  633 (931)
Q Consensus       554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  633 (931)
                      -+.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            3678888888876 45433  46899999999999988888899999999999999999998899999999999999999


Q ss_pred             Cc-ccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360          634 NE-LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       634 N~-l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      |+ +.+..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..++++++|             
T Consensus        90 n~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------------  155 (285)
T 1ozn_A           90 NAQLRSVDPATFH-GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-------------  155 (285)
T ss_dssp             CTTCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCCccccCHHHhc-CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-------------
Confidence            98 6633355554 79999999999999998889999999999999999999997766667666655             


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                     +.|+|++|++++..+..+..+++|++|++++|++++..|..|+.+++|+
T Consensus       156 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          156 -------------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             -------------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -------------------------------cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                                           8999999999977777899999999999999999999999999999999


Q ss_pred             EEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          793 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       793 ~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      .|++++|++++..|..+..+++|++|++++|++++.++.
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence            999999999988888899999999999999999987664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=7.3e-29  Score=293.15  Aligned_cols=84  Identities=15%  Similarity=0.103  Sum_probs=51.6

Q ss_pred             CCCCCcEEEcCCCcCCCc----chhhhhhcccccccCccEEEcCCcccc----cccccccCCCCCCCEEeccCCcCCcCc
Q 002360          314 KLCKLTSFSMASTKLSQD----ISEILGIFSGCVAYELESLYLRGCQIF----GHLTNQLGQFKRLNFLGLSNNQMDGSI  385 (931)
Q Consensus       314 ~l~~L~~L~l~~~~l~~~----~~~~~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~  385 (931)
                      .+++|++|++++|.+++.    ++.....+     ++|++|++++|.+.    +.++..+..+++|++|++++|.+.+ +
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l  235 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHN-----TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-L  235 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHC-----CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-G
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcC-----CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-H
Confidence            444555555555544433    22222333     66777777777665    2334445567888888888887774 5


Q ss_pred             cccccCCCCCCEEEccCC
Q 002360          386 PLSLGQMANLESLDLSNN  403 (931)
Q Consensus       386 p~~~~~l~~L~~L~L~~n  403 (931)
                      |..+..+++|++|+++..
T Consensus       236 ~~~~~~~~~L~~L~l~~~  253 (592)
T 3ogk_B          236 VGFFKAAANLEEFCGGSL  253 (592)
T ss_dssp             HHHHHHCTTCCEEEECBC
T ss_pred             HHHHhhhhHHHhhccccc
Confidence            667778888888888763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=2e-28  Score=289.48  Aligned_cols=389  Identities=12%  Similarity=0.047  Sum_probs=225.1

Q ss_pred             CCCCCcEEEcCCCcCCCcchhhhhhcccccccC-ccEEEcCCccc-cc-ccccccCCCCCCCEEeccCCcCCcC----cc
Q 002360          314 KLCKLTSFSMASTKLSQDISEILGIFSGCVAYE-LESLYLRGCQI-FG-HLTNQLGQFKRLNFLGLSNNQMDGS----IP  386 (931)
Q Consensus       314 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-L~~L~L~~n~l-~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p  386 (931)
                      .+++|++|+++++.+++..+..+....    +. |++|++++|.. .. .++.....+++|++|+|++|.+.+.    ++
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~----~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~  185 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKAR----ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLH  185 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHH----GGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhc----cccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHH
Confidence            567777777777776665555554321    33 77777777752 11 1222233567777777777776544    33


Q ss_pred             ccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCCceeEEecCCCCCCCccccEEEccCCCCCCCcChhhhccC
Q 002360          387 LSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK  466 (931)
Q Consensus       387 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~  466 (931)
                      .....+++|++|++++|.+++....                                             .++..+..++
T Consensus       186 ~~~~~~~~L~~L~L~~n~~~~~~~~---------------------------------------------~l~~~~~~~~  220 (592)
T 3ogk_B          186 ELAQHNTSLEVLNFYMTEFAKISPK---------------------------------------------DLETIARNCR  220 (592)
T ss_dssp             HHHHHCCCCCEEECTTCCCSSCCHH---------------------------------------------HHHHHHHHCT
T ss_pred             HHHhcCCCccEEEeeccCCCccCHH---------------------------------------------HHHHHHhhCC
Confidence            3345667777777777766522111                                             1233344556


Q ss_pred             CCcEEeCCCCCCCCCcchhHHhccccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhc
Q 002360          467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ  546 (931)
Q Consensus       467 ~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~  546 (931)
                      +|+.|++++|.+.+ ++ .....+++|++|+++.....  ++..                                ....
T Consensus       221 ~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~--~~~~--------------------------------~~~~  264 (592)
T 3ogk_B          221 SLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNED--IGMP--------------------------------EKYM  264 (592)
T ss_dssp             TCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCC--TTCT--------------------------------TSSS
T ss_pred             CCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccc--cchH--------------------------------HHHH
Confidence            66666666666554 33 23344566666666542211  1100                                0011


Q ss_pred             cCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCCEEEccCCcCccccchhhccCCC
Q 002360          547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI  625 (931)
Q Consensus       547 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  625 (931)
                      .+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++... ..+..+++|++|+++++-..+.++..+..+++
T Consensus       265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred             HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence            123356677777766433 2355566667778888887777654322 23566777888877733333334444466777


Q ss_pred             CcEEecCC-----------CcccccCchhHHhhcCcCcEEEccCccccccCCcccCC-CCCcCEEEcc----CCcccccc
Q 002360          626 LEALDVGE-----------NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCR-LASLQILDVA----YNSLLGTI  689 (931)
Q Consensus       626 L~~L~L~~-----------N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls----~N~l~~~~  689 (931)
                      |++|++++           |.+++.....+...+++|++|+++.|.+++..+..+.. +++|+.|+++    .|.+++..
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p  423 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP  423 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence            88888873           55554433344446778888888777777665555554 7778888875    45555321


Q ss_pred             Cc-cccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccC--cccccCCccccC-CC
Q 002360          690 PR-CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMN--NFSGEIPVEVTN-LQ  765 (931)
Q Consensus       690 p~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N--~l~~~ip~~l~~-l~  765 (931)
                      .+ .+                                        ......++.|+.|+++++  .+++..+..+.. ++
T Consensus       424 ~~~~~----------------------------------------~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~  463 (592)
T 3ogk_B          424 LDNGV----------------------------------------RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSP  463 (592)
T ss_dssp             CHHHH----------------------------------------HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred             HHHHH----------------------------------------HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence            10 00                                        001112444577777643  366555544443 67


Q ss_pred             CCCEEEccCCcCcc-cCCcCccCcCCCCEEeccCCcCccc-CcccccCCCCCCeeeCCCcccccc
Q 002360          766 GLQSLNLSHNLFTG-RIPDNIGVMRSIESLDFSANQLSGQ-IPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       766 ~L~~L~Ls~N~l~~-~ip~~l~~l~~L~~LdLs~N~l~~~-~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +|++|+|++|++++ .++..+..+++|++|++++|++++. ++.....+++|++|++++|++++.
T Consensus       464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            78888888888775 3444456677888888888887655 344445677888888888877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=6e-28  Score=259.47  Aligned_cols=224  Identities=23%  Similarity=0.273  Sum_probs=169.9

Q ss_pred             ccEEECcCCccc-cccCCccc-------CCCCCCEEecCCCcceecCCCcc--cCCCCCCEEEccCCcCccccchhhccC
Q 002360          554 IEFLKLSTNHFS-EGIPDCWM-------NWPRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIPTSFKNF  623 (931)
Q Consensus       554 L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~~~~l  623 (931)
                      |+.|++++|+++ ..+|..+.       ++++|++|++++|++++.+|..+  ..+++|++|++++|++++. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            777788888774 34454443       57788888888888887777765  7788888888888888876 7777666


Q ss_pred             -----CCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccccc--CCccc--CCCCCcCEEEccCCccccc--cC-c
Q 002360          624 -----SILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGD--FPIQL--CRLASLQILDVAYNSLLGT--IP-R  691 (931)
Q Consensus       624 -----~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~--~p~~l--~~l~~L~~L~Ls~N~l~~~--~p-~  691 (931)
                           ++|++|++++|++.+..|..+. .+++|++|++++|++.+.  .|..+  ..+++|+.|++++|++++.  ++ .
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  222 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA  222 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence                 7888888888888755445554 688888888888887665  23333  7788888889988888731  11 1


Q ss_pred             cccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC-ccccCCCCCCEE
Q 002360          692 CINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP-VEVTNLQGLQSL  770 (931)
Q Consensus       692 ~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L  770 (931)
                      .+.+                                            ++.|+.|||++|++++.+| ..+..+++|++|
T Consensus       223 ~~~~--------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  258 (312)
T 1wwl_A          223 LAAA--------------------------------------------RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL  258 (312)
T ss_dssp             HHHT--------------------------------------------TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred             HHhc--------------------------------------------CCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence            1112                                            3445889999999988775 456778999999


Q ss_pred             EccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360          771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       771 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +|++|+++ .+|..+.  ++|++||+++|++++. |. +..+++|++|++++|++++.
T Consensus       259 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          259 NLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             ECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred             ECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence            99999998 8888777  8899999999999876 66 88999999999999998763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.7e-27  Score=254.98  Aligned_cols=222  Identities=21%  Similarity=0.245  Sum_probs=161.8

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|++++..+  +..+++|++|++++|++++..     ..++|++|++++|++++..+..   +++|++|+
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~  126 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIY  126 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEE
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEE
Confidence            4567777777777766443  667777777777777776432     2367777777777777655443   56677777


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCccc-CCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQL-CRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      +++|++++..|..+. .+++|++|++++|.+++..+..+ ..+++|+.|+|++|++++..+.  ..              
T Consensus       127 l~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~--------------  189 (317)
T 3o53_A          127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV--------------  189 (317)
T ss_dssp             CCSSCCCSGGGBCTG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred             CCCCCCCCccchhhh-ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc--cc--------------
Confidence            777777754443443 57778888888887777666655 3678888888888887744211  11              


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  789 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  789 (931)
                                                    ++.|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..++
T Consensus       190 ------------------------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~  237 (317)
T 3o53_A          190 ------------------------------FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ  237 (317)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred             ------------------------------cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence                                          2335788888888885 4555888999999999999998 6788899999


Q ss_pred             CCCEEeccCCcCc-ccCcccccCCCCCCeeeCCC-ccccccCCC
Q 002360          790 SIESLDFSANQLS-GQIPQSMSNLSFLNYLNLSN-NNLNGEIPS  831 (931)
Q Consensus       790 ~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls~-N~l~g~ip~  831 (931)
                      +|+.|++++|+++ +.+|..+..++.|+.+++++ +.++|..|.
T Consensus       238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            9999999999998 77888899999999999984 467776554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.5e-25  Score=251.37  Aligned_cols=230  Identities=22%  Similarity=0.211  Sum_probs=201.0

Q ss_pred             cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360          525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS  604 (931)
Q Consensus       525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  604 (931)
                      .++.+++++|.+.+..+..    +..+++|+.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADT----FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TCSEEECCSSCCCEECTTT----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CccEEECcCCcCceECHHH----cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            4455555555555444332    344789999999999999998899999999999999999999777778999999999


Q ss_pred             EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360          605 LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS  684 (931)
Q Consensus       605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  684 (931)
                      |++++|+++...+..|.++++|+.|++++|...+.++...+..+++|++|++++|++++. | .+..+++|+.|+|++|+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCc
Confidence            999999999888889999999999999997666688877666899999999999999954 4 57889999999999999


Q ss_pred             cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      +++..|..|.++++|                                            +.|+|++|++++..|..|..+
T Consensus       230 l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l  265 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSL--------------------------------------------KKLWVMNSQVSLIERNAFDGL  265 (452)
T ss_dssp             CSEECGGGGTTCTTC--------------------------------------------CEEECTTSCCCEECTTTTTTC
T ss_pred             CcccCcccccCccCC--------------------------------------------CEEEeCCCcCceECHHHhcCC
Confidence            998888888877665                                            899999999999999999999


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                      ++|+.|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus       266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence            9999999999999988888899999999999999998754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.9e-27  Score=254.75  Aligned_cols=269  Identities=19%  Similarity=0.208  Sum_probs=211.0

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEE
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSL  605 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  605 (931)
                      ++..+++.+.+........    ..+++|++|++++|++++..|..|..+++|++|++++|++++..+  +..+++|++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLR----QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHH----TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             eeEeeccccchhhhHHHHh----ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            3445555555543332222    235789999999999999888899999999999999999997665  8899999999


Q ss_pred             EccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360          606 NLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL  685 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  685 (931)
                      ++++|.+++..     ..++|++|++++|++++..+.    .+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus        86 ~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  156 (317)
T 3o53_A           86 DLNNNYVQELL-----VGPSIETLHAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI  156 (317)
T ss_dssp             ECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC
T ss_pred             ECcCCcccccc-----CCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC
Confidence            99999998643     348999999999999854433    478999999999999988888899999999999999999


Q ss_pred             ccccCcccc-ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          686 LGTIPRCIN-NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       686 ~~~~p~~~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      ++..|..+. .++.                                            |+.|+|++|++++. | ....+
T Consensus       157 ~~~~~~~~~~~l~~--------------------------------------------L~~L~L~~N~l~~~-~-~~~~l  190 (317)
T 3o53_A          157 DTVNFAELAASSDT--------------------------------------------LEHLNLQYNFIYDV-K-GQVVF  190 (317)
T ss_dssp             CEEEGGGGGGGTTT--------------------------------------------CCEEECTTSCCCEE-E-CCCCC
T ss_pred             CcccHHHHhhccCc--------------------------------------------CCEEECCCCcCccc-c-ccccc
Confidence            977666553 3333                                            48999999999865 3 33459


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc-ccCCCC-CccCcccccc
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN-GEIPSS-TQLQSFDASS  842 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~-g~ip~~-~~~~~~~~~~  842 (931)
                      ++|++|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+++ +.+|.. ..+..+...+
T Consensus       191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~  268 (317)
T 3o53_A          191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA  268 (317)
T ss_dssp             TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred             ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence            999999999999995 5556999999999999999999 57888999999999999999998 444432 2333344444


Q ss_pred             cCCC-CCCCCCCCCCC
Q 002360          843 FAGN-DLCGAPLSSCT  857 (931)
Q Consensus       843 ~~~n-~l~~~~~~~c~  857 (931)
                      ..++ .+.|.+...|.
T Consensus       269 l~~~~~l~~~~~~~~~  284 (317)
T 3o53_A          269 KQTVKKLTGQNEEECT  284 (317)
T ss_dssp             HHHHHHHHSSSSCCCS
T ss_pred             CCCchhccCCchhccC
Confidence            4444 44454444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=4.5e-25  Score=249.53  Aligned_cols=230  Identities=23%  Similarity=0.257  Sum_probs=199.6

Q ss_pred             cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCE
Q 002360          525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRS  604 (931)
Q Consensus       525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  604 (931)
                      .++.+++++|++.+..+..    +..+++|++|+|++|+++++.+..|.++++|++|+|++|++++..+..|..+++|++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~----~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  140 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNS----FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE  140 (440)
T ss_dssp             TCSEEECCSCCCCEECTTT----TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred             CCcEEEccCCcCCeeCHHH----hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence            3445555555554443322    345789999999999999988889999999999999999999777778999999999


Q ss_pred             EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCc
Q 002360          605 LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS  684 (931)
Q Consensus       605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~  684 (931)
                      |++++|.++...+..|..+++|+.|++++|+..+.++...+..+++|++|++++|+++ .+| .+..+++|+.|+|++|+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~  218 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNH  218 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCc
Confidence            9999999998888899999999999999976666788766668999999999999998 455 47889999999999999


Q ss_pred             cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCC
Q 002360          685 LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL  764 (931)
Q Consensus       685 l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l  764 (931)
                      +++..|..|.++++|                                            +.|+|++|++++..+..|.++
T Consensus       219 l~~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l  254 (440)
T 3zyj_A          219 LSAIRPGSFQGLMHL--------------------------------------------QKLWMIQSQIQVIERNAFDNL  254 (440)
T ss_dssp             CCEECTTTTTTCTTC--------------------------------------------CEEECTTCCCCEECTTSSTTC
T ss_pred             cCccChhhhccCccC--------------------------------------------CEEECCCCceeEEChhhhcCC
Confidence            998888888877665                                            899999999999999999999


Q ss_pred             CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360          765 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                      ++|++|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            9999999999999988888899999999999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=4.2e-27  Score=252.81  Aligned_cols=246  Identities=20%  Similarity=0.292  Sum_probs=206.5

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcce-ecCCCccc-------CCCCCCEEEccCCcCccccchhh--
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT-GSLPMSIG-------TLTSLRSLNLRNNRLSGVIPTSF--  620 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~p~~~--  620 (931)
                      .++|+.|++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       ++++|++|++++|++++..|..+  
T Consensus        42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  117 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE  117 (312)
T ss_dssp             EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred             CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence            45789999999999  567655543  999999999995 45666554       68999999999999999999876  


Q ss_pred             ccCCCCcEEecCCCcccccCchhHHhhc-----CcCcEEEccCccccccCCcccCCCCCcCEEEccCCcccccc--Cccc
Q 002360          621 KNFSILEALDVGENELVGSIPTWIGERF-----SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTI--PRCI  693 (931)
Q Consensus       621 ~~l~~L~~L~L~~N~l~~~~p~~~~~~l-----~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~--p~~~  693 (931)
                      ..+++|++|++++|++++. |..+. .+     ++|++|++++|++.+..|..+..+++|+.|++++|++.+.+  |..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            8999999999999999965 77665 56     89999999999999888899999999999999999987653  2222


Q ss_pred             --cccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccc--cCC-ccccCCCCCC
Q 002360          694 --NNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG--EIP-VEVTNLQGLQ  768 (931)
Q Consensus       694 --~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~--~ip-~~l~~l~~L~  768 (931)
                        .++                                            +.|+.|+|++|++++  .++ ..+..+++|+
T Consensus       196 ~~~~l--------------------------------------------~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~  231 (312)
T 1wwl_A          196 CPLKF--------------------------------------------PTLQVLALRNAGMETPSGVCSALAAARVQLQ  231 (312)
T ss_dssp             CTTSC--------------------------------------------TTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred             HhccC--------------------------------------------CCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence              333                                            345899999999983  233 3456889999


Q ss_pred             EEEccCCcCcccCC-cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCC
Q 002360          769 SLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGND  847 (931)
Q Consensus       769 ~L~Ls~N~l~~~ip-~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~  847 (931)
                      +|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++||+++|++++. |....+..+...++.+|.
T Consensus       232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNP  307 (312)
T ss_dssp             EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCT
T ss_pred             EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCC
Confidence            99999999998886 55777999999999999999 8888777  8999999999999987 766677788888899997


Q ss_pred             CCC
Q 002360          848 LCG  850 (931)
Q Consensus       848 l~~  850 (931)
                      +.+
T Consensus       308 l~~  310 (312)
T 1wwl_A          308 FLD  310 (312)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            765

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=9.9e-26  Score=247.15  Aligned_cols=282  Identities=21%  Similarity=0.197  Sum_probs=182.0

Q ss_pred             ccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCC
Q 002360           92 LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLE  171 (931)
Q Consensus        92 l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~  171 (931)
                      ++...+.+.+++.++  .+|..+.  ++|++|++++|.+++..+..|.++++|++|++++|.+..++...  +.++++|+
T Consensus        30 C~~~~~c~~~~~~l~--~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~  103 (353)
T 2z80_A           30 CDRNGICKGSSGSLN--SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS--FSSLGSLE  103 (353)
T ss_dssp             ECTTSEEECCSTTCS--SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCC
T ss_pred             CCCCeEeeCCCCCcc--ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh--cCCCCCCC
Confidence            344445666666666  3455443  46777777777776555556777777777777776665543322  45556666


Q ss_pred             eEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCc-cccCCCCCCCEEEccCC-cCCCCCcccccCCCCCCEEEc
Q 002360          172 HLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL-LSSANFSSLTTLDLSGN-QFQGQIPSRLGNLTSLKHLDL  249 (931)
Q Consensus       172 ~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L  249 (931)
                      +|++++|.++.++.  ..+..+++|++|++++|.+..++. ..+.++++|++|++++| .+....+..++.+++|++|++
T Consensus       104 ~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l  181 (353)
T 2z80_A          104 HLDLSYNYLSNLSS--SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI  181 (353)
T ss_dssp             EEECCSSCCSSCCH--HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred             EEECCCCcCCcCCH--hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEEC
Confidence            66666666655433  235677788888888888877776 56777788888888877 355455566777777777777


Q ss_pred             CCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEEcCCCcCC
Q 002360          250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS  329 (931)
Q Consensus       250 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~l~  329 (931)
                      ++|++.+..|..+..+++|++|++++|.+. .++...+..+++|++|++++| .+.+..+..+..               
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~---------------  244 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT-DLDTFHFSELST---------------  244 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC-BCTTCCCC-------------------
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC-cccccccccccc---------------
Confidence            777777777777777777777777777764 444433445666666666666 444433222111               


Q ss_pred             CcchhhhhhcccccccCccEEEcCCccccc----ccccccCCCCCCCEEeccCCcCCcCcccc-ccCCCCCCEEEccCCc
Q 002360          330 QDISEILGIFSGCVAYELESLYLRGCQIFG----HLTNQLGQFKRLNFLGLSNNQMDGSIPLS-LGQMANLESLDLSNNK  404 (931)
Q Consensus       330 ~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~  404 (931)
                               ..  ....++.++++++.+.+    .+|.++..+++|++|++++|.+.. +|.. |..+++|++|++++|+
T Consensus       245 ---------~~--~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          245 ---------GE--TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             -------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             ---------cc--ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCC
Confidence                     00  01445666666666554    356667788888999998888884 4444 5788889999999998


Q ss_pred             CCCccc
Q 002360          405 LNGTVS  410 (931)
Q Consensus       405 l~~~~~  410 (931)
                      +.+..+
T Consensus       313 ~~~~~~  318 (353)
T 2z80_A          313 WDCSCP  318 (353)
T ss_dssp             BCCCHH
T ss_pred             ccCcCC
Confidence            877654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-25  Score=256.17  Aligned_cols=218  Identities=20%  Similarity=0.198  Sum_probs=173.8

Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .+++|+.|++++|.+++..|..|..+++|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34578888888888888777888888888899998888887665  7888888899998888886443     3788888


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccc-ccccccccCCCCCC
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN-NFSAMATADSSDQS  708 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~~~~~~~~  708 (931)
                      ++++|.+++..+.    .+++|+.|++++|.+++..|..+..+++|+.|+|++|.+++..|..+. .++.|         
T Consensus       105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L---------  171 (487)
T 3oja_A          105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL---------  171 (487)
T ss_dssp             ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred             ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence            9998888854442    467888899999988888888888888899999999988887776664 44443         


Q ss_pred             ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCc
Q 002360          709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM  788 (931)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  788 (931)
                                                         +.|+|++|.+++..+  ...+++|++|+|++|++++..| .++.+
T Consensus       172 -----------------------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l  213 (487)
T 3oja_A          172 -----------------------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSA  213 (487)
T ss_dssp             -----------------------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGG
T ss_pred             -----------------------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCC
Confidence                                               788888888886532  3458888888888888885444 48888


Q ss_pred             CCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360          789 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      ++|+.|||++|.+++ +|..+..+++|+.|++++|++.
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            888888888888885 6777888888888888888887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=8.6e-25  Score=230.71  Aligned_cols=210  Identities=20%  Similarity=0.226  Sum_probs=146.6

Q ss_pred             CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEc
Q 002360          577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILIL  656 (931)
Q Consensus       577 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  656 (931)
                      +|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+. .+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEEC
Confidence            566666666666655555566666666666666666655555666666666666666666643333333 5666666666


Q ss_pred             cCccccccCCcccCCCCCcCEEEccCCccccc-cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhh
Q 002360          657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGT-IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVE  735 (931)
Q Consensus       657 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (931)
                      ++|.+.+..+..+..+++|+.|++++|++.+. +|..+.++++|                                    
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L------------------------------------  151 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL------------------------------------  151 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC------------------------------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC------------------------------------
Confidence            66666665555667777777777777777653 46666655554                                    


Q ss_pred             hhhhccceeEEEcccCcccccCCccccCCCCCC----EEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360          736 YNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  811 (931)
Q Consensus       736 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~  811 (931)
                              +.|+|++|++++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+..+..
T Consensus       152 --------~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          152 --------EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             --------CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             --------CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence                    6777777777776666776666666    889999999865555544 448999999999999777777888


Q ss_pred             CCCCCeeeCCCccccccCCCC
Q 002360          812 LSFLNYLNLSNNNLNGEIPSS  832 (931)
Q Consensus       812 l~~L~~L~ls~N~l~g~ip~~  832 (931)
                      +++|+.|++++|+++|.+|..
T Consensus       223 l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTTTT
T ss_pred             cccccEEEccCCcccccCCch
Confidence            999999999999999988754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.5e-24  Score=249.73  Aligned_cols=203  Identities=26%  Similarity=0.288  Sum_probs=130.4

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|++|++++|++++. |.   .+++|+.|++++|++++ +|..   +++|++|++++|++++. |.   .+++|+.|+
T Consensus       100 l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~  167 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLW  167 (622)
T ss_dssp             CTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEE
T ss_pred             CCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEE
Confidence            45666777777766653 32   34567777777777663 4433   36677777777776643 32   245677777


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|+++ .+|    ..+++|+.|++++|.+++ +|..   +++|+.|++++|.++ .+|..                  
T Consensus       168 L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~------------------  219 (622)
T 3g06_A          168 AYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL------------------  219 (622)
T ss_dssp             CCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC------------------
T ss_pred             CCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC------------------
Confidence            7777776 455    145677777777777764 3332   356777777777766 33321                  


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                   ++.|+.|+|++|++++ +|   ..+++|+.|+|++|+|+ .+|.   .+++
T Consensus       220 -----------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~  262 (622)
T 3g06_A          220 -----------------------------PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSG  262 (622)
T ss_dssp             -----------------------------CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred             -----------------------------CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---cccc
Confidence                                         1224677777777774 45   44567777777777777 5555   4567


Q ss_pred             CCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          791 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       791 L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      |+.|+|++|+++ .+|..+.++++|+.|+|++|+++|.+|.
T Consensus       263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            777777777777 6677777777777777777777776654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.4e-25  Score=255.55  Aligned_cols=212  Identities=21%  Similarity=0.225  Sum_probs=170.5

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|++++|.+++..+.   .+++|+.|+
T Consensus        57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~  126 (487)
T 3oja_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIY  126 (487)
T ss_dssp             CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEE
T ss_pred             CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEE
Confidence            5677888888888877555  7778888888888888875432     37888888888888876654   357788888


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccC-CCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLC-RLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      +++|.+++..|..+. .+++|+.|++++|.+++..|..+. .+++|+.|+|++|.+++..+.  ..              
T Consensus       127 L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~--~~--------------  189 (487)
T 3oja_A          127 LANNKITMLRDLDEG-CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ--VV--------------  189 (487)
T ss_dssp             CCSSCCCSGGGBCGG-GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC--CC--------------
T ss_pred             CCCCCCCCCCchhhc-CCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccc--cc--------------
Confidence            888888866666665 688888888888888887777775 688999999999998865322  12              


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  789 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  789 (931)
                                                    ++.|+.|+|++|.+++. |+.+..+++|+.|+|++|.+++ +|..++.++
T Consensus       190 ------------------------------l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~  237 (487)
T 3oja_A          190 ------------------------------FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQ  237 (487)
T ss_dssp             ------------------------------CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCT
T ss_pred             ------------------------------CCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCC
Confidence                                          23458899999999965 4459999999999999999994 788899999


Q ss_pred             CCCEEeccCCcCc-ccCcccccCCCCCCeeeCC
Q 002360          790 SIESLDFSANQLS-GQIPQSMSNLSFLNYLNLS  821 (931)
Q Consensus       790 ~L~~LdLs~N~l~-~~~p~~l~~l~~L~~L~ls  821 (931)
                      +|+.|++++|+++ +.+|..+..++.|+.++++
T Consensus       238 ~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999999999999 7788899999999999887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.1e-24  Score=250.38  Aligned_cols=188  Identities=27%  Similarity=0.379  Sum_probs=141.1

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++|+.|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|+.|++++|.+++ +|   ..+++|+.|++
T Consensus       121 ~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~L  188 (622)
T 3g06_A          121 SGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSV  188 (622)
T ss_dssp             TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEEC
Confidence            456677777777665 3332   3677777777777773 343   24577788888888775 34   44677888888


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|+++ .+|.    .+++|+.|++++|.++ .+|..   +++|+.|++++|++++ +|.   .                
T Consensus       189 s~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp~---~----------------  239 (622)
T 3g06_A          189 SDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPV---L----------------  239 (622)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCC---C----------------
T ss_pred             CCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CCC---C----------------
Confidence            888887 4664    3567888888888887 34432   4788999999998875 442   1                


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                  ++.|+.|+|++|+++ .+|.   .+++|+.|+|++|+|+ .+|..++.+++|
T Consensus       240 ----------------------------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L  286 (622)
T 3g06_A          240 ----------------------------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE  286 (622)
T ss_dssp             ----------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT
T ss_pred             ----------------------------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc
Confidence                                        223488999999998 5665   6789999999999999 889999999999


Q ss_pred             CEEeccCCcCcccCcccccCCC
Q 002360          792 ESLDFSANQLSGQIPQSMSNLS  813 (931)
Q Consensus       792 ~~LdLs~N~l~~~~p~~l~~l~  813 (931)
                      +.|+|++|++++.+|..+..++
T Consensus       287 ~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          287 TTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSCCCCHHHHHHHHHHH
T ss_pred             CEEEecCCCCCCcCHHHHHhcc
Confidence            9999999999999998887765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=8.3e-24  Score=222.08  Aligned_cols=206  Identities=20%  Similarity=0.258  Sum_probs=132.5

Q ss_pred             ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCC
Q 002360          554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE  633 (931)
Q Consensus       554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  633 (931)
                      .+.+++++++++. +|..+.  ++++.|++++|++++..+..|.++++|++|++++|.++...+..|.+           
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~-----------   83 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE-----------   83 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS-----------
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC-----------
Confidence            4555555555554 333222  34555555555555444444555555555555555554433333444           


Q ss_pred             CcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccc
Q 002360          634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILY  713 (931)
Q Consensus       634 N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~  713 (931)
                                    +++|++|++++|++++..+..+..+++|+.|++++|++++..|..|.++++|              
T Consensus        84 --------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------  135 (270)
T 2o6q_A           84 --------------LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------  135 (270)
T ss_dssp             --------------CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------
T ss_pred             --------------CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------
Confidence                          4555555555555554444445556666666666666665555555544443              


Q ss_pred             cccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCE
Q 002360          714 AFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES  793 (931)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~  793 (931)
                                                    +.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++
T Consensus       136 ------------------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          136 ------------------------------TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             ------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             ------------------------------CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                          66777777777555556788888999999999988777777888999999


Q ss_pred             EeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          794 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       794 LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      |++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  223 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG  223 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence            99999999877777788889999999999999887653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=9.7e-24  Score=222.62  Aligned_cols=213  Identities=20%  Similarity=0.207  Sum_probs=185.3

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      +++++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999988889999999999999999999888888999999999999999999988899999999999999


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCcccccc-CCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGD-FPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      ++|.+.+..+..+. .+++|++|++++|.+++. +|..+..+++|+.|++++|++++..+..+..+..++.+        
T Consensus       108 ~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l--------  178 (276)
T 2z62_A          108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL--------  178 (276)
T ss_dssp             TTSCCCCSTTCCCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC--------
T ss_pred             CCCCccccCchhcc-cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc--------
Confidence            99999854443444 799999999999999874 68999999999999999999998877777776665321        


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                      ...|++++|++++..+..+. ..+|++|+|++|++++..+..|+.+++
T Consensus       179 --------------------------------~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~  225 (276)
T 2z62_A          179 --------------------------------NLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTS  225 (276)
T ss_dssp             --------------------------------CEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred             --------------------------------ceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccccc
Confidence                                            02799999999966555554 458999999999999777777899999


Q ss_pred             CCEEeccCCcCcccCc
Q 002360          791 IESLDFSANQLSGQIP  806 (931)
Q Consensus       791 L~~LdLs~N~l~~~~p  806 (931)
                      |+.|++++|++++..|
T Consensus       226 L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          226 LQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCEEECCSSCBCCCTT
T ss_pred             ccEEEccCCcccccCC
Confidence            9999999999997654

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2e-26  Score=272.49  Aligned_cols=160  Identities=13%  Similarity=0.077  Sum_probs=99.9

Q ss_pred             cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEcc--C----cccccc-----CCcccCCCCCcCEEEccCCccccccC
Q 002360          622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILR--S----NKFHGD-----FPIQLCRLASLQILDVAYNSLLGTIP  690 (931)
Q Consensus       622 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~--~----n~l~~~-----~p~~l~~l~~L~~L~Ls~N~l~~~~p  690 (931)
                      ++++|+.|+++.|.+++..+..+...+++|+.|+++  +    +.++..     ++..+..+++|+.|++++ .+++..+
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~  448 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF  448 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence            467777777777777665555555557777777777  3    334311     112245567788888866 5543333


Q ss_pred             ccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccc-cCCCCCCE
Q 002360          691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV-TNLQGLQS  769 (931)
Q Consensus       691 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l-~~l~~L~~  769 (931)
                      ..+..                                           .++.|+.|+|++|.+++..+..+ ..+++|++
T Consensus       449 ~~l~~-------------------------------------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~  485 (594)
T 2p1m_B          449 EYIGT-------------------------------------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK  485 (594)
T ss_dssp             HHHHH-------------------------------------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred             HHHHH-------------------------------------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence            22221                                           13345788888888876555554 66888888


Q ss_pred             EEccCCcCcccCCc-CccCcCCCCEEeccCCcCcccCcccc-cCCCCCCeeeCCCccc
Q 002360          770 LNLSHNLFTGRIPD-NIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNL  825 (931)
Q Consensus       770 L~Ls~N~l~~~ip~-~l~~l~~L~~LdLs~N~l~~~~p~~l-~~l~~L~~L~ls~N~l  825 (931)
                      |+|++|.+++..+. .+..+++|+.|++++|+++......+ ..++.|+...+..+.-
T Consensus       486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence            88888888654443 34457888888888888865444444 4556666655555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=2.7e-23  Score=219.89  Aligned_cols=205  Identities=20%  Similarity=0.255  Sum_probs=137.6

Q ss_pred             cCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCc
Q 002360          573 MNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLM  652 (931)
Q Consensus       573 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~  652 (931)
                      .++++++++++++|.++ .+|..+.  +++++|++++|.+++..+..|.++++|+.|++++|.+++ ++..  ..+++|+
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~   80 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLG   80 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCC
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCC
Confidence            34555566666666555 3444432  456666666666665555666666666666666666653 3332  2566677


Q ss_pred             EEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecc
Q 002360          653 ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGF  732 (931)
Q Consensus       653 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  732 (931)
                      +|++++|+++ .+|..+..+++|+.|++++|++++..|..|.++++|                                 
T Consensus        81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L---------------------------------  126 (290)
T 1p9a_G           81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL---------------------------------  126 (290)
T ss_dssp             EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC---------------------------------
T ss_pred             EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC---------------------------------
Confidence            7777777666 456666677777777777777776555666655554                                 


Q ss_pred             hhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCC
Q 002360          733 LVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL  812 (931)
Q Consensus       733 ~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l  812 (931)
                                 +.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+
T Consensus       127 -----------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          127 -----------QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             -----------CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             -----------CEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence                       67777777777666666777888888888888888555556677888888888888887 667777777


Q ss_pred             CCCCeeeCCCccccccC
Q 002360          813 SFLNYLNLSNNNLNGEI  829 (931)
Q Consensus       813 ~~L~~L~ls~N~l~g~i  829 (931)
                      +.|+.+++++|++.|..
T Consensus       195 ~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          195 HLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             CCCSEEECCSCCBCCSG
T ss_pred             ccCCeEEeCCCCccCcC
Confidence            78888888888887653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.90  E-value=4e-26  Score=269.86  Aligned_cols=388  Identities=13%  Similarity=0.089  Sum_probs=231.4

Q ss_pred             cCccEEEcCCcccccccccccC-CCCCCCEEeccCC-cCCcC-ccccccCCCCCCEEEccCCcCCCccchhhhccccccc
Q 002360          345 YELESLYLRGCQIFGHLTNQLG-QFKRLNFLGLSNN-QMDGS-IPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLV  421 (931)
Q Consensus       345 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  421 (931)
                      ++|++|++++|.+++..+..+. .+++|++|++++| .+... ++.....+++|++|++++|.+++..+. .+..     
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~-~l~~-----  178 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGH-WLSH-----  178 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGG-GGGG-----
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchH-HHHH-----
Confidence            4566666666655544444343 4556666666665 23221 222333556666666666654432211 1111     


Q ss_pred             eeccCCceeEEecCCCCCCCccccEEEccCCC--CCC-CcChhhhccCCCcEEeCCCCCCCCCcchhHHhccccceEEec
Q 002360          422 SFLANANSLIFKINPNWVPPFQLTVLELRSCH--LGP-RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNV  498 (931)
Q Consensus       422 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~~~--l~~-~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~L~~L~l  498 (931)
                                     ....+++|+.|++++|.  +.. .++.....+++|+.|++++|...+.++. ....+++|++|++
T Consensus       179 ---------------~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l  242 (594)
T 2p1m_B          179 ---------------FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGT  242 (594)
T ss_dssp             ---------------SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEEC
T ss_pred             ---------------HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH-HHhcCCcceEccc
Confidence                           01123455555555554  110 1222234568888888888732222332 3344567777765


Q ss_pred             cCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhhhccCCCCCCccEE-ECcCCccccccCCcccCCCC
Q 002360          499 SGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFL-KLSTNHFSEGIPDCWMNWPR  577 (931)
Q Consensus       499 s~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~  577 (931)
                      +.+..                          ++..+.+.+     +...+..+++|+.| .+.+... +.++..+..+++
T Consensus       243 ~~~~~--------------------------~~~~~~~~~-----l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~  290 (594)
T 2p1m_B          243 GGYTA--------------------------EVRPDVYSG-----LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSR  290 (594)
T ss_dssp             SBCCC--------------------------CCCHHHHHH-----HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTT
T ss_pred             ccccC--------------------------ccchhhHHH-----HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCC
Confidence            54321                          011111111     11223446788888 4443332 234444556788


Q ss_pred             CCEEecCCCcceecC-CCcccCCCCCCEEEccCCcCcc-ccchhhccCCCCcEEec---------CCCcccccCchhHHh
Q 002360          578 LRTLNLGNNNFTGSL-PMSIGTLTSLRSLNLRNNRLSG-VIPTSFKNFSILEALDV---------GENELVGSIPTWIGE  646 (931)
Q Consensus       578 L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L---------~~N~l~~~~p~~~~~  646 (931)
                      |++|++++|.+++.. +..+..+++|++|++++| +.. .++.....+++|+.|++         +.+.+++.....+..
T Consensus       291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~  369 (594)
T 2p1m_B          291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM  369 (594)
T ss_dssp             CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred             CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence            999999999876432 223557889999999988 432 23333346888999988         335565544445555


Q ss_pred             hcCcCcEEEccCccccccCCcccC-CCCCcCEEEcc--C----CccccccCccccccccccccCCCCCCccccccccCCC
Q 002360          647 RFSRLMILILRSNKFHGDFPIQLC-RLASLQILDVA--Y----NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDN  719 (931)
Q Consensus       647 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls--~----N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~  719 (931)
                      .+++|+.|.+..|.+++..+..+. .+++|+.|+++  +    |.+++...+.                           
T Consensus       370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~---------------------------  422 (594)
T 2p1m_B          370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI---------------------------  422 (594)
T ss_dssp             HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH---------------------------
T ss_pred             hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh---------------------------
Confidence            688999998888888876555554 47899999998  3    3443111000                           


Q ss_pred             ccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC-CCCCCEEEccCCcCcccCCcCc-cCcCCCCEEecc
Q 002360          720 KIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN-LQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS  797 (931)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~-l~~L~~L~Ls~N~l~~~ip~~l-~~l~~L~~LdLs  797 (931)
                                  ........++.|+.|+|++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+++
T Consensus       423 ------------~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          423 ------------GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             ------------HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEE
T ss_pred             ------------HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECc
Confidence                        0001122355679999987 777766666665 8999999999999987655555 668999999999


Q ss_pred             CCcCcccCcc-cccCCCCCCeeeCCCccccc
Q 002360          798 ANQLSGQIPQ-SMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       798 ~N~l~~~~p~-~l~~l~~L~~L~ls~N~l~g  827 (931)
                      +|++++..+. ....+++|++|++++|+++.
T Consensus       490 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          490 DCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             SCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             CCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            9999766554 44568999999999998853

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.90  E-value=5.5e-24  Score=223.57  Aligned_cols=222  Identities=18%  Similarity=0.234  Sum_probs=175.2

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      .+..+++..+.+.+..  .+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++.  ..+..+++|++|+++
T Consensus        20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred             HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence            3445556666655533  24556788888888888773 3 3577788888888888888763  367788888888888


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      +|.+++ ++...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+..+++|             
T Consensus        94 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------  159 (272)
T 3rfs_A           94 GNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL-------------  159 (272)
T ss_dssp             TSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-------------
T ss_pred             CCccCc-cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC-------------
Confidence            888884 444433478888888888888887777778888999999999999887666666665555             


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                     +.|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+
T Consensus       160 -------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          160 -------------------------------TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             -------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -------------------------------CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence                                           7899999999987777789999999999999999988888889999999


Q ss_pred             EEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCC
Q 002360          793 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  832 (931)
Q Consensus       793 ~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~  832 (931)
                      .|++++|++++..       +.|+.+++++|.++|.+|..
T Consensus       209 ~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          209 YIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             EEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             EEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            9999999988654       46888999999999999974

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1e-22  Score=213.80  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=152.6

Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCC
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR  603 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  603 (931)
                      ...+.++++++.++. +|..+      .++++.|++++|++++..+..|.++++|++|++++|++++..+..|..+++|+
T Consensus        16 ~~~~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTTEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCCEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            457899999999985 44333      35799999999999998888999999999999999999966666788999999


Q ss_pred             EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCC
Q 002360          604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYN  683 (931)
Q Consensus       604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N  683 (931)
                      +|++++|++++..+..|.++++|++|++++|++++ +|...+..+++|++|++++|.+++..+..+..+++|        
T Consensus        89 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------  159 (270)
T 2o6q_A           89 TLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL--------  159 (270)
T ss_dssp             EEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------
T ss_pred             EEECCCCcCCcCCHhHcccccCCCEEECCCCccCe-eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc--------
Confidence            99999999998777777788888888888887773 333222245555555555555543333334444444        


Q ss_pred             ccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccC
Q 002360          684 SLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTN  763 (931)
Q Consensus       684 ~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~  763 (931)
                                                                                  +.|+|++|++++..+..|..
T Consensus       160 ------------------------------------------------------------~~L~L~~n~l~~~~~~~~~~  179 (270)
T 2o6q_A          160 ------------------------------------------------------------KELRLYNNQLKRVPEGAFDK  179 (270)
T ss_dssp             ------------------------------------------------------------CEEECCSSCCSCCCTTTTTT
T ss_pred             ------------------------------------------------------------ceeEecCCcCcEeChhHhcc
Confidence                                                                        45555555555444555777


Q ss_pred             CCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC
Q 002360          764 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI  805 (931)
Q Consensus       764 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~  805 (931)
                      +++|++|+|++|++++..+..|..+++|+.|++++|++.+.-
T Consensus       180 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            788888888888888666667888888888888888887553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.90  E-value=6.7e-25  Score=243.73  Aligned_cols=243  Identities=15%  Similarity=0.209  Sum_probs=193.7

Q ss_pred             hhccCCCCCCccEEECcCCcccccc----CCcccCCCCCCEEecCCC---cceecCCCcc-------cCCCCCCEEEccC
Q 002360          544 ICQGENFSKNIEFLKLSTNHFSEGI----PDCWMNWPRLRTLNLGNN---NFTGSLPMSI-------GTLTSLRSLNLRN  609 (931)
Q Consensus       544 ~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n---~l~~~~p~~~-------~~l~~L~~L~L~~  609 (931)
                      ++..+..+++|+.|++++|++++..    +..+..+++|++|+|++|   ++.+.+|..+       ..+++|++|++++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            3334445788999999999988753    345778899999999996   4445556554       6889999999999


Q ss_pred             CcCcc----ccchhhccCCCCcEEecCCCcccccCchhHHh---hc---------CcCcEEEccCcccc-ccCC---ccc
Q 002360          610 NRLSG----VIPTSFKNFSILEALDVGENELVGSIPTWIGE---RF---------SRLMILILRSNKFH-GDFP---IQL  669 (931)
Q Consensus       610 n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~---~l---------~~L~~L~L~~n~l~-~~~p---~~l  669 (931)
                      |.+..    .+|..+..+++|++|+|++|.+.+..+..+..   .+         ++|++|++++|+++ +.+|   ..+
T Consensus       104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  183 (386)
T 2ca6_A          104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  183 (386)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence            99987    47788899999999999999997554444432   23         89999999999997 3444   466


Q ss_pred             CCCCCcCEEEccCCcccc-----ccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhcccee
Q 002360          670 CRLASLQILDVAYNSLLG-----TIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVR  744 (931)
Q Consensus       670 ~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  744 (931)
                      ..+++|+.|++++|+++.     ..|..+..++                                            .|+
T Consensus       184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~--------------------------------------------~L~  219 (386)
T 2ca6_A          184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ--------------------------------------------ELK  219 (386)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT--------------------------------------------TCC
T ss_pred             HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC--------------------------------------------Ccc
Confidence            788999999999999872     2332444443                                            458


Q ss_pred             EEEcccCccc----ccCCccccCCCCCCEEEccCCcCccc----CCcCc--cCcCCCCEEeccCCcCcc----cCcccc-
Q 002360          745 SIDISMNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNI--GVMRSIESLDFSANQLSG----QIPQSM-  809 (931)
Q Consensus       745 ~LdLs~N~l~----~~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l--~~l~~L~~LdLs~N~l~~----~~p~~l-  809 (931)
                      .|+|++|.++    +.+|..+..+++|++|+|++|++++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~  299 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID  299 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence            9999999996    67888999999999999999999876    56666  348999999999999998    588887 


Q ss_pred             cCCCCCCeeeCCCccccccCC
Q 002360          810 SNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       810 ~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      .++++|++|++++|++++..|
T Consensus       300 ~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          300 EKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHCTTCCEEECTTSBSCTTSH
T ss_pred             hcCCCceEEEccCCcCCcchh
Confidence            668999999999999998765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=3.5e-24  Score=235.27  Aligned_cols=259  Identities=17%  Similarity=0.181  Sum_probs=193.5

Q ss_pred             EEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccC----CcccCCC-CCCEEecCCCcceecCCCcccCC---
Q 002360          528 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP----DCWMNWP-RLRTLNLGNNNFTGSLPMSIGTL---  599 (931)
Q Consensus       528 ~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~Ls~n~l~~~~p~~~~~l---  599 (931)
                      +++++.|.+++.+|..+..    .++|++|++++|.+++..+    ..+..++ +|++|++++|.+++..+..+..+   
T Consensus         2 ~~~ls~n~~~~~~~~~~~~----~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~   77 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI----PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA   77 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS----CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHT
T ss_pred             ccccccccchHHHHHHHhC----CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhc
Confidence            3566777777776655432    5669999999999988666    6777888 89999999999987766666654   


Q ss_pred             --CCCCEEEccCCcCccccchhhcc----C-CCCcEEecCCCcccccCchhHHhh----cCcCcEEEccCccccccC---
Q 002360          600 --TSLRSLNLRNNRLSGVIPTSFKN----F-SILEALDVGENELVGSIPTWIGER----FSRLMILILRSNKFHGDF---  665 (931)
Q Consensus       600 --~~L~~L~L~~n~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~p~~~~~~----l~~L~~L~L~~n~l~~~~---  665 (931)
                        ++|++|++++|.+++..+..+..    + ++|++|++++|++++..+..+...    .++|++|++++|.+++..   
T Consensus        78 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           78 IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             SCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             cCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence              89999999999998777765443    4 899999999999986555554422    368999999999998543   


Q ss_pred             -CcccCCCC-CcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhc-cc
Q 002360          666 -PIQLCRLA-SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSIL-NL  742 (931)
Q Consensus       666 -p~~l~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  742 (931)
                       +..+..++ +|+.|+|++|++++..+..+...-                                        ... +.
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~  197 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPAS  197 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTT
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCC
Confidence             34445555 899999999999876665443220                                        112 24


Q ss_pred             eeEEEcccCccccc----CCccccC-CCCCCEEEccCCcCcccCC----cCccCcCCCCEEeccCCcCcccC-------c
Q 002360          743 VRSIDISMNNFSGE----IPVEVTN-LQGLQSLNLSHNLFTGRIP----DNIGVMRSIESLDFSANQLSGQI-------P  806 (931)
Q Consensus       743 L~~LdLs~N~l~~~----ip~~l~~-l~~L~~L~Ls~N~l~~~ip----~~l~~l~~L~~LdLs~N~l~~~~-------p  806 (931)
                      |+.|||++|.+++.    ++..+.. .++|++|+|++|++++..+    ..+..+++|+.|++++|.+.+..       +
T Consensus       198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~  277 (362)
T 3goz_A          198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG  277 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred             CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence            68999999999863    5556665 4589999999999986544    34567789999999999955443       4


Q ss_pred             ccccCCCCCCeeeCCCccccccCC
Q 002360          807 QSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       807 ~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      ..+..+++|+.||+++|++.+..|
T Consensus       278 ~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          278 AAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             TTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             HHhccCCceEEEecCCCcCCCcch
Confidence            467788899999999999877633

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=6.9e-23  Score=215.18  Aligned_cols=208  Identities=21%  Similarity=0.263  Sum_probs=180.1

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|.++..  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence            57899999999998753  3578899999999999999853  4788999999999999999988888899999999999


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|++++ +|...+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|           
T Consensus       116 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-----------  183 (272)
T 3rfs_A          116 LVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL-----------  183 (272)
T ss_dssp             CTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-----------
T ss_pred             CCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC-----------
Confidence            99999985 444443479999999999999998878788999999999999999997777667666655           


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                       +.|++++|++++..|..++.+++|++|++++|.+.+..       ++
T Consensus       184 ---------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~  223 (272)
T 3rfs_A          184 ---------------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PG  223 (272)
T ss_dssp             ---------------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TT
T ss_pred             ---------------------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cH
Confidence                                             89999999999888888999999999999999998654       46


Q ss_pred             CCEEeccCCcCcccCcccccCCCC
Q 002360          791 IESLDFSANQLSGQIPQSMSNLSF  814 (931)
Q Consensus       791 L~~LdLs~N~l~~~~p~~l~~l~~  814 (931)
                      |+.|+++.|.++|.+|.+++.+..
T Consensus       224 l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHHHHHHHHhCCCcccCcccccCC
Confidence            899999999999999998876643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=2.2e-22  Score=212.81  Aligned_cols=203  Identities=19%  Similarity=0.157  Sum_probs=176.1

Q ss_pred             CCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          550 FSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .++++++++++++.++. +|..+.  ++++.|++++|.+++..+..|..+++|++|++++|.+++..+.  ..+++|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL   82 (290)
T ss_dssp             CSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred             ccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence            35788999999999987 454443  6899999999999988888899999999999999999865443  788999999


Q ss_pred             ecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCc
Q 002360          630 DVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSS  709 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~  709 (931)
                      ++++|+++ .+|..+. .+++|++|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|          
T Consensus        83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------  150 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL----------  150 (290)
T ss_dssp             ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC----------
T ss_pred             ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCC----------
Confidence            99999998 7887665 79999999999999998888889999999999999999997766666665555          


Q ss_pred             cccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcC
Q 002360          710 DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  789 (931)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~  789 (931)
                                                        +.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..+.
T Consensus       151 ----------------------------------~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          151 ----------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             ----------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             ----------------------------------CEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence                                              89999999999766667789999999999999999 8898899999


Q ss_pred             CCCEEeccCCcCccc
Q 002360          790 SIESLDFSANQLSGQ  804 (931)
Q Consensus       790 ~L~~LdLs~N~l~~~  804 (931)
                      +|+.|+|++|++.+.
T Consensus       196 ~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          196 LLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CCSEEECCSCCBCCS
T ss_pred             cCCeEEeCCCCccCc
Confidence            999999999999854

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=5.5e-23  Score=220.62  Aligned_cols=205  Identities=22%  Similarity=0.238  Sum_probs=126.6

Q ss_pred             CCCCEEecCCCcceecCCCcc--cCCCCCCEEEccCCcCccccc----hhhccCCCCcEEecCCCcccccCchhHHhhcC
Q 002360          576 PRLRTLNLGNNNFTGSLPMSI--GTLTSLRSLNLRNNRLSGVIP----TSFKNFSILEALDVGENELVGSIPTWIGERFS  649 (931)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~  649 (931)
                      ++|++|++++|.+++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..|..+. .++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-AFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-CCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-cCC
Confidence            345555555555555555554  555555555555555554333    2233455555566655555533333332 455


Q ss_pred             cCcEEEccCcccccc--C--CcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccce
Q 002360          650 RLMILILRSNKFHGD--F--PIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDT  725 (931)
Q Consensus       650 ~L~~L~L~~n~l~~~--~--p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~  725 (931)
                      +|++|++++|++.+.  +  +..+..+++|++|+|++|+++. +|....                               
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~-------------------------------  217 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA-------------------------------  217 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH-------------------------------
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH-------------------------------
Confidence            566666666655432  1  2233567777778888877752 121100                               


Q ss_pred             eEEeecchhhhhhhccceeEEEcccCcccccCCccccCC---CCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          726 SLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNL---QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       726 ~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                               .....++.|+.|||++|++++.+|..+..+   ++|++|+|++|+++ .+|..+.  ++|++|||++|+++
T Consensus       218 ---------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          218 ---------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN  285 (310)
T ss_dssp             ---------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred             ---------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence                     001123345778888888887777777776   58889999999988 7787764  78999999999998


Q ss_pred             ccCcccccCCCCCCeeeCCCccccc
Q 002360          803 GQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       803 ~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      +. |. +..+++|+.|++++|+++.
T Consensus       286 ~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          286 RA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CC-ch-hhhCCCccEEECcCCCCCC
Confidence            64 43 6778888999999998864

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=3.3e-22  Score=207.31  Aligned_cols=209  Identities=18%  Similarity=0.234  Sum_probs=128.7

Q ss_pred             CCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEc
Q 002360          577 RLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILIL  656 (931)
Q Consensus       577 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L  656 (931)
                      ..++++++++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.++                   
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------------------   72 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-------------------   72 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-------------------
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-------------------
Confidence            4566777777666 4555443  46666666666666655555555555555555555555                   


Q ss_pred             cCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhh
Q 002360          657 RSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEY  736 (931)
Q Consensus       657 ~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  736 (931)
                            +..+..+..+++|+.|+|++|++++..+..|..+++|                                     
T Consensus        73 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------------------------------  109 (251)
T 3m19_A           73 ------TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-------------------------------------  109 (251)
T ss_dssp             ------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-------------------------------------
T ss_pred             ------ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-------------------------------------
Confidence                  3334444555555555555555554444444443333                                     


Q ss_pred             hhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCC
Q 002360          737 NSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN  816 (931)
Q Consensus       737 ~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~  816 (931)
                             +.|+|++|++++..+..|..+++|++|+|++|++++..+..|+.+++|++|||++|++++..|..+..+++|+
T Consensus       110 -------~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          110 -------DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             -------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             -------CEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence                   5666666666655555667788888888888888866666788888888888888888877777888888888


Q ss_pred             eeeCCCccccccCCCCCccCc------ccccccCCCCCCCCCCC-CCC
Q 002360          817 YLNLSNNNLNGEIPSSTQLQS------FDASSFAGNDLCGAPLS-SCT  857 (931)
Q Consensus       817 ~L~ls~N~l~g~ip~~~~~~~------~~~~~~~~n~l~~~~~~-~c~  857 (931)
                      +|++++|+++|..+....+..      ....+..|+.+++.|.. .|.
T Consensus       183 ~L~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~  230 (251)
T 3m19_A          183 TITLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCS  230 (251)
T ss_dssp             EEECCSCCBCTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBT
T ss_pred             EEEeeCCceeCCccccHHHHHHHHhcccceeeccCcccccCCCcCccC
Confidence            888888888877443221111      11223445566665544 565

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=6.3e-23  Score=220.16  Aligned_cols=231  Identities=16%  Similarity=0.187  Sum_probs=179.8

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcc--cCCCCCCEEecCCCcceecCC----CcccCC
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCW--MNWPRLRTLNLGNNNFTGSLP----MSIGTL  599 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~p----~~~~~l  599 (931)
                      ++.+.+.++.++......+.... ..++|++|++++|++++..|..+  ..+++|++|++++|.+++..+    ..+..+
T Consensus        66 l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           66 VRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             eeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            45555665555432221111111 13569999999999999888888  889999999999999997555    344578


Q ss_pred             CCCCEEEccCCcCccccchhhccCCCCcEEecCCCccccc--Cc-hhHHhhcCcCcEEEccCccccccC--Cc-ccCCCC
Q 002360          600 TSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS--IP-TWIGERFSRLMILILRSNKFHGDF--PI-QLCRLA  673 (931)
Q Consensus       600 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p-~~~~~~l~~L~~L~L~~n~l~~~~--p~-~l~~l~  673 (931)
                      ++|++|++++|++.+..+..|..+++|++|++++|++.+.  ++ ......+++|++|++++|+++...  +. .+..++
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~  224 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV  224 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence            9999999999999998889999999999999999998653  22 222236899999999999997321  12 246789


Q ss_pred             CcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcc
Q 002360          674 SLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNF  753 (931)
Q Consensus       674 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l  753 (931)
                      +|+.|+|++|++++..|+.+..+..+                                         +.|+.|+|++|++
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~-----------------------------------------~~L~~L~Ls~N~l  263 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWS-----------------------------------------SALNSLNLSFAGL  263 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCC-----------------------------------------TTCCCEECCSSCC
T ss_pred             CCCEEECCCCCCCccchhhHHhccCc-----------------------------------------CcCCEEECCCCCC
Confidence            99999999999998888877665321                                         3358999999999


Q ss_pred             cccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcc
Q 002360          754 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG  803 (931)
Q Consensus       754 ~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~  803 (931)
                      + .+|..+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       264 ~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          264 E-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             C-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             C-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9 7788775  8999999999999953 54 6788999999999999974

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.87  E-value=7.9e-23  Score=222.73  Aligned_cols=252  Identities=17%  Similarity=0.202  Sum_probs=189.7

Q ss_pred             ccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceec-CCCcccCCCCCCE
Q 002360          526 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS-LPMSIGTLTSLRS  604 (931)
Q Consensus       526 l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~  604 (931)
                      ++.++++.+.+.+.....+.     .+.++.|++++|.+++..+. +..+++|++|++++|.+++. +|..+..+++|++
T Consensus        49 ~~~l~l~~~~~~~~~~~~~~-----~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           49 WQTLDLTGKNLHPDVTGRLL-----SQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             SSEEECTTCBCCHHHHHHHH-----HTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             heeeccccccCCHHHHHhhh-----hccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            45666666665532222111     16789999999999886665 55789999999999998865 7777888999999


Q ss_pred             EEccCCcCccccchhhccCCCCcEEecCCC-ccccc-CchhHHhhcCcCcEEEccCc-ccccc-CCcccCCCC-CcCEEE
Q 002360          605 LNLRNNRLSGVIPTSFKNFSILEALDVGEN-ELVGS-IPTWIGERFSRLMILILRSN-KFHGD-FPIQLCRLA-SLQILD  679 (931)
Q Consensus       605 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~  679 (931)
                      |++++|.+++..+..+..+++|++|++++| .+++. ++..+. .+++|++|++++| .+++. ++..+..++ +|+.|+
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS-SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH-HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh-cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            999999998888888999999999999999 67753 555444 7899999999999 88765 566777888 999999


Q ss_pred             ccCCc--cc-cccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccc
Q 002360          680 VAYNS--LL-GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSG  755 (931)
Q Consensus       680 Ls~N~--l~-~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~  755 (931)
                      +++|.  ++ +.+|..+.++                                            +.|+.|++++|. +++
T Consensus       202 l~~~~~~~~~~~l~~~~~~~--------------------------------------------~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTLVRRC--------------------------------------------PNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             CCSCGGGSCHHHHHHHHHHC--------------------------------------------TTCSEEECTTCTTCCG
T ss_pred             eCCCcccCCHHHHHHHHhhC--------------------------------------------CCCCEEeCCCCCcCCH
Confidence            99994  44 3344444443                                            345889999998 777


Q ss_pred             cCCccccCCCCCCEEEccCCc-CcccCCcCccCcCCCCEEeccCCcCcccCcccccCC-CCCCeeeCCCccccccCCCC
Q 002360          756 EIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPSS  832 (931)
Q Consensus       756 ~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~g~ip~~  832 (931)
                      ..+..+..+++|++|++++|. ++......++.+++|+.|++++| ++.   ..+..+ ..|..|++++|++++..|..
T Consensus       238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            888888999999999999995 33222235788899999999998 432   234444 34777888999999888753

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=4.2e-22  Score=205.01  Aligned_cols=75  Identities=23%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             EEEcccCcccccCCccccCCCCCCEEEccCCc-CcccCCcCccCc-CCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          745 SIDISMNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM-RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       745 ~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~ip~~l~~l-~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      .|++++|+++ .+|......++|++|+|++|+ +++..+..|+.+ ++|+.||+++|++++ +|..  .+++|+.|++++
T Consensus       160 ~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          160 TLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARN  235 (239)
T ss_dssp             EEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTT
T ss_pred             EEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccC
Confidence            4444444444 223222222455555555553 554444445555 555555555555553 2222  344455555554


Q ss_pred             c
Q 002360          823 N  823 (931)
Q Consensus       823 N  823 (931)
                      +
T Consensus       236 ~  236 (239)
T 2xwt_C          236 T  236 (239)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=2e-21  Score=201.50  Aligned_cols=181  Identities=19%  Similarity=0.259  Sum_probs=136.5

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      .+.+.++++++.++. +|..+.  ++++.|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            467899999999987 555554  68999999999999888889999999999999999999988888898999999999


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|+++ .+|...+..+++|++|++++|++++..+..+..+++|                                    
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L------------------------------------  133 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKL------------------------------------  133 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------------------------------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcc------------------------------------
Confidence            999887 4443333345555555555555554443334444444                                    


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                      +.|+|++|++++..+..|+.+++|++|+|++|++++..|..+..+++|
T Consensus       134 --------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          134 --------------------------------KELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             --------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             --------------------------------cEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence                                            445555555554445567777888888888888887777778888888


Q ss_pred             CEEeccCCcCccc
Q 002360          792 ESLDFSANQLSGQ  804 (931)
Q Consensus       792 ~~LdLs~N~l~~~  804 (931)
                      +.|++++|++++.
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            8888888888776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.4e-21  Score=208.81  Aligned_cols=208  Identities=20%  Similarity=0.333  Sum_probs=151.3

Q ss_pred             ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360          558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      .+..+.+++.++  +..+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++.
T Consensus        25 ~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~   98 (308)
T 1h6u_A           25 AAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (308)
T ss_dssp             HTTCSSTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCceec--HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC
Confidence            344444444322  3456677777887777763 44 56777788888888887775544  777788888888888876


Q ss_pred             ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccC
Q 002360          638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSG  717 (931)
Q Consensus       638 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~  717 (931)
                       .++ .+. .+++|++|++++|++++. + .+..+++|+.|++++|++++..+  +..+++                   
T Consensus        99 -~~~-~~~-~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~-------------------  152 (308)
T 1h6u_A           99 -NVS-AIA-GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTN-------------------  152 (308)
T ss_dssp             -CCG-GGT-TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTT-------------------
T ss_pred             -Cch-hhc-CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCC-------------------
Confidence             344 333 678888888888888753 3 37788888888888888875433  444333                   


Q ss_pred             CCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEecc
Q 002360          718 DNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFS  797 (931)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs  797 (931)
                                               |+.|++++|++++. +. +..+++|++|++++|++++. +. +..+++|++|+++
T Consensus       153 -------------------------L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~  203 (308)
T 1h6u_A          153 -------------------------LQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLK  203 (308)
T ss_dssp             -------------------------CCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECT
T ss_pred             -------------------------ccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEcc
Confidence                                     47888888888854 33 88889999999999999854 43 7888999999999


Q ss_pred             CCcCcccCcccccCCCCCCeeeCCCcccccc
Q 002360          798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       798 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~  828 (931)
                      +|++++..|  +..+++|+.|++++|++++.
T Consensus       204 ~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          204 NNQISDVSP--LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             TSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred             CCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence            999986653  78889999999999998763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=4.7e-23  Score=228.80  Aligned_cols=252  Identities=20%  Similarity=0.243  Sum_probs=191.5

Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCc---cccccCCcc-------cCCCCCCEEecCCCccee---
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH---FSEGIPDCW-------MNWPRLRTLNLGNNNFTG---  590 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~---l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~---  590 (931)
                      +.++.+++++|.+++..+..++..+..+++|+.|++++|.   +++.+|..+       ..+++|++|+|++|.+++   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            3445555555555555555555666678899999999864   444455444       688999999999999986   


Q ss_pred             -cCCCcccCCCCCCEEEccCCcCccccchhhc----cC---------CCCcEEecCCCccc-ccCch---hHHhhcCcCc
Q 002360          591 -SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK----NF---------SILEALDVGENELV-GSIPT---WIGERFSRLM  652 (931)
Q Consensus       591 -~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~p~---~~~~~l~~L~  652 (931)
                       .+|..+..+++|++|++++|.++...+..+.    .+         ++|++|++++|+++ +.+|.   .+ ..+++|+
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l-~~~~~L~  190 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF-QSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH-HHCTTCC
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH-HhCCCcC
Confidence             4677788899999999999999755444444    33         89999999999997 44552   33 3689999


Q ss_pred             EEEccCccccc-----cCCcccCCCCCcCEEEccCCccc----cccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360          653 ILILRSNKFHG-----DFPIQLCRLASLQILDVAYNSLL----GTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE  723 (931)
Q Consensus       653 ~L~L~~n~l~~-----~~p~~l~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  723 (931)
                      .|++++|+++.     ..|..+..+++|+.|+|++|.++    +.+|..+..+++|                        
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L------------------------  246 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL------------------------  246 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC------------------------
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc------------------------
Confidence            99999999983     34557889999999999999996    5566666555544                        


Q ss_pred             ceeEEeecchhhhhhhccceeEEEcccCccccc----CCcccc--CCCCCCEEEccCCcCcc----cCCcCc-cCcCCCC
Q 002360          724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE----IPVEVT--NLQGLQSLNLSHNLFTG----RIPDNI-GVMRSIE  792 (931)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~----ip~~l~--~l~~L~~L~Ls~N~l~~----~ip~~l-~~l~~L~  792 (931)
                                          +.|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ .++++|+
T Consensus       247 --------------------~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~  306 (386)
T 2ca6_A          247 --------------------RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL  306 (386)
T ss_dssp             --------------------CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred             --------------------CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence                                8999999999876    567774  49999999999999997    488877 6789999


Q ss_pred             EEeccCCcCcccCc--cccc-CCCCCCeeeC
Q 002360          793 SLDFSANQLSGQIP--QSMS-NLSFLNYLNL  820 (931)
Q Consensus       793 ~LdLs~N~l~~~~p--~~l~-~l~~L~~L~l  820 (931)
                      +|++++|++++..|  ..+. .++.++..++
T Consensus       307 ~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l  337 (386)
T 2ca6_A          307 FLELNGNRFSEEDDVVDEIREVFSTRGRGEL  337 (386)
T ss_dssp             EEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred             EEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence            99999999998875  3332 2344444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=2.8e-22  Score=218.38  Aligned_cols=254  Identities=13%  Similarity=0.194  Sum_probs=187.4

Q ss_pred             CCcEEeCCCCCCCCCcchhHHhcc--ccceEEeccCcccccCCCCCCCCCCCcccCCCCccccEEEcccCCCccccchhh
Q 002360          467 KLNDLDISSTRISDKIPRAFWNSI--FQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLI  544 (931)
Q Consensus       467 ~L~~L~Ls~n~i~~~~~~~~~~~~--~~L~~L~ls~n~l~~~~p~~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~  544 (931)
                      .++.++++++.+.   +.. ...+  +.++.|++++|.+.+..+..                                  
T Consensus        48 ~~~~l~l~~~~~~---~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~----------------------------------   89 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDV-TGRLLSQGVIAFRCPRSFMDQPLAEH----------------------------------   89 (336)
T ss_dssp             TSSEEECTTCBCC---HHH-HHHHHHTTCSEEECTTCEECSCCCSC----------------------------------
T ss_pred             hheeeccccccCC---HHH-HHhhhhccceEEEcCCccccccchhh----------------------------------
Confidence            4677777777765   222 2223  67777777777776554431                                  


Q ss_pred             hccCCCCCCccEEECcCCccccc-cCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCC-cCccc-cchhhc
Q 002360          545 CQGENFSKNIEFLKLSTNHFSEG-IPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNN-RLSGV-IPTSFK  621 (931)
Q Consensus       545 ~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~  621 (931)
                          ..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+++. ++..+.
T Consensus        90 ----~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           90 ----FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             ----CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             ----ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHh
Confidence                1256788888888888765 6777788889999999999888777778888899999999998 67653 666788


Q ss_pred             cCCCCcEEecCCC-ccccc-CchhHHhhcC-cCcEEEccCc--ccc-ccCCcccCCCCCcCEEEccCCc-cccccCcccc
Q 002360          622 NFSILEALDVGEN-ELVGS-IPTWIGERFS-RLMILILRSN--KFH-GDFPIQLCRLASLQILDVAYNS-LLGTIPRCIN  694 (931)
Q Consensus       622 ~l~~L~~L~L~~N-~l~~~-~p~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~  694 (931)
                      ++++|++|++++| .+++. ++..+. .++ +|++|++++|  .++ +.+|..+..+++|+.|++++|. +++..+..+.
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~~~~-~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~  244 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF  244 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred             cCCCCCEEcCCCCCCcChHHHHHHHH-hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence            8899999999999 88754 455554 788 9999999998  455 4466677788999999999998 6666666666


Q ss_pred             ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccccCCccccCCCCCCEEEcc
Q 002360          695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSGEIPVEVTNLQGLQSLNLS  773 (931)
Q Consensus       695 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l~~L~~L~Ls  773 (931)
                      ++++|                                            +.|++++|. ++......++.+++|++|+++
T Consensus       245 ~l~~L--------------------------------------------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          245 QLNYL--------------------------------------------QHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             GCTTC--------------------------------------------CEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             CCCCC--------------------------------------------CEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            55544                                            889999885 332222367889999999999


Q ss_pred             CCcCcccCCcCccCc-CCCCEEeccCCcCcccCcccccC
Q 002360          774 HNLFTGRIPDNIGVM-RSIESLDFSANQLSGQIPQSMSN  811 (931)
Q Consensus       774 ~N~l~~~ip~~l~~l-~~L~~LdLs~N~l~~~~p~~l~~  811 (931)
                      +| ++   ...+..+ .+++.|++++|++++..|..++.
T Consensus       281 ~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          281 GI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIGN  315 (336)
T ss_dssp             TS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             Cc-cC---HHHHHHHHhhCcceEEecccCccccCCcccc
Confidence            99 33   2245555 34888889999999999987664

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.4e-21  Score=199.37  Aligned_cols=198  Identities=16%  Similarity=0.185  Sum_probs=171.8

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCc-ceecCCCcccCCCCCCEEEccC-CcCccccchhhccCCCCcEE
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNN-FTGSLPMSIGTLTSLRSLNLRN-NRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L  629 (931)
                      ++++.|++++|+++++.+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            589999999999999888899999999999999997 8877777899999999999999 99998888899999999999


Q ss_pred             ecCCCcccccCchhHHhhcCcCc---EEEccCc-cccccCCcccCCCCCcC-EEEccCCccccccCccccccccccccCC
Q 002360          630 DVGENELVGSIPTWIGERFSRLM---ILILRSN-KFHGDFPIQLCRLASLQ-ILDVAYNSLLGTIPRCINNFSAMATADS  704 (931)
Q Consensus       630 ~L~~N~l~~~~p~~~~~~l~~L~---~L~L~~n-~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~~~~  704 (931)
                      ++++|++++ +|. + ..+++|+   +|++++| .+++..+..+..+++|+ .|++++|+++ .+|......+       
T Consensus       111 ~l~~n~l~~-lp~-~-~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~-------  179 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-L-TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT-------  179 (239)
T ss_dssp             EEEEECCCS-CCC-C-TTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTC-------
T ss_pred             eCCCCCCcc-ccc-c-ccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCC-------
Confidence            999999984 887 4 3788888   9999999 99988788899999999 9999999998 5554322112       


Q ss_pred             CCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCc-ccccCCccccCC-CCCCEEEccCCcCcccCC
Q 002360          705 SDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNN-FSGEIPVEVTNL-QGLQSLNLSHNLFTGRIP  782 (931)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~-l~~~ip~~l~~l-~~L~~L~Ls~N~l~~~ip  782 (931)
                                                           .|+.|+|++|+ +++..+..|..+ ++|++|++++|+++ .+|
T Consensus       180 -------------------------------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~  221 (239)
T 2xwt_C          180 -------------------------------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALP  221 (239)
T ss_dssp             -------------------------------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCC
T ss_pred             -------------------------------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCC
Confidence                                                 35899999995 997778889999 99999999999999 556


Q ss_pred             cCccCcCCCCEEeccCCc
Q 002360          783 DNIGVMRSIESLDFSANQ  800 (931)
Q Consensus       783 ~~l~~l~~L~~LdLs~N~  800 (931)
                      ..  .+++|+.|+++++.
T Consensus       222 ~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          222 SK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CT--TCTTCSEEECTTC-
T ss_pred             hh--HhccCceeeccCcc
Confidence            54  68899999999863

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.86  E-value=7.7e-23  Score=224.59  Aligned_cols=219  Identities=20%  Similarity=0.207  Sum_probs=130.5

Q ss_pred             CccEEECcCCccccccCCcccCC-----CCCCEEecCCCcceecCCCc----ccCC-CCCCEEEccCCcCccccchhhcc
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNW-----PRLRTLNLGNNNFTGSLPMS----IGTL-TSLRSLNLRNNRLSGVIPTSFKN  622 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l-----~~L~~L~Ls~n~l~~~~p~~----~~~l-~~L~~L~L~~n~l~~~~p~~~~~  622 (931)
                      +|++|++++|++++..+..+..+     ++|++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+..
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            45555555555555444333332     56666666666665444332    2233 56667777777666555544332


Q ss_pred             -----CCCCcEEecCCCcccccCchhHHh---hcC-cCcEEEccCccccccCCccc----CCC-CCcCEEEccCCccccc
Q 002360          623 -----FSILEALDVGENELVGSIPTWIGE---RFS-RLMILILRSNKFHGDFPIQL----CRL-ASLQILDVAYNSLLGT  688 (931)
Q Consensus       623 -----l~~L~~L~L~~N~l~~~~p~~~~~---~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~Ls~N~l~~~  688 (931)
                           .++|++|++++|++.+..+..+..   .++ +|++|++++|++++..+..+    ..+ ++|+.|||++|++++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence                 356777777777776433322211   233 77777777777766554333    334 4788888888887643


Q ss_pred             cCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC----ccccCC
Q 002360          689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP----VEVTNL  764 (931)
Q Consensus       689 ~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip----~~l~~l  764 (931)
                      ....+..                                       ......+.|+.|||++|.+++..+    ..+..+
T Consensus       212 ~~~~l~~---------------------------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l  252 (362)
T 3goz_A          212 SYAELAY---------------------------------------IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL  252 (362)
T ss_dssp             CHHHHHH---------------------------------------HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTT
T ss_pred             HHHHHHH---------------------------------------HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcC
Confidence            2211110                                       000112345788888888876544    335677


Q ss_pred             CCCCEEEccCCcCccc-------CCcCccCcCCCCEEeccCCcCcccCccccc
Q 002360          765 QGLQSLNLSHNLFTGR-------IPDNIGVMRSIESLDFSANQLSGQIPQSMS  810 (931)
Q Consensus       765 ~~L~~L~Ls~N~l~~~-------ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~  810 (931)
                      ++|++|+|++|.+.+.       ++..+..+++|+.||+++|++.+..|..+.
T Consensus       253 ~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~  305 (362)
T 3goz_A          253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS  305 (362)
T ss_dssp             TTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred             CCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence            8899999999985533       334677889999999999999877555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.7e-21  Score=204.17  Aligned_cols=192  Identities=21%  Similarity=0.327  Sum_probs=158.7

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|++++.  ..+..+++|+.|+
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            4678999999998887 34 58889999999999999985443  88899999999999999864  3688899999999


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|++++ ++. + ..+++|++|++++|.+++..+  +..+++|+.|++++|++++..+  +..+++            
T Consensus       114 l~~n~l~~-~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~------------  174 (308)
T 1h6u_A          114 LTSTQITD-VTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK------------  174 (308)
T ss_dssp             CTTSCCCC-CGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTT------------
T ss_pred             CCCCCCCC-chh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCC------------
Confidence            99999984 554 4 378999999999999986544  7889999999999999985433  544444            


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                      |+.|++++|++++..+  +..+++|++|+|++|++++..|  +..+++
T Consensus       175 --------------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~  218 (308)
T 1h6u_A          175 --------------------------------LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSN  218 (308)
T ss_dssp             --------------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTT
T ss_pred             --------------------------------CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCC
Confidence                                            4889999999986443  8899999999999999995543  889999


Q ss_pred             CCEEeccCCcCcc
Q 002360          791 IESLDFSANQLSG  803 (931)
Q Consensus       791 L~~LdLs~N~l~~  803 (931)
                      |+.|++++|++++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999999985

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=4.3e-20  Score=201.52  Aligned_cols=245  Identities=14%  Similarity=0.152  Sum_probs=185.9

Q ss_pred             cccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCC-CcccCCCCCC
Q 002360          525 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP-MSIGTLTSLR  603 (931)
Q Consensus       525 ~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~  603 (931)
                      ..+.+++++++++. +|..+      .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.++++++
T Consensus        10 ~~~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~   82 (350)
T 4ay9_X           10 SNRVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH   82 (350)
T ss_dssp             ETTEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred             eCCEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence            34567777777763 44333      3579999999999998777889999999999999999876655 5688899887


Q ss_pred             E-EEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC-ccccccCCcccCCCC-CcCEEEc
Q 002360          604 S-LNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS-NKFHGDFPIQLCRLA-SLQILDV  680 (931)
Q Consensus       604 ~-L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~-~L~~L~L  680 (931)
                      + +.++.|+++...|..|.++++|++|++++|++. .+|...+....++..|++.+ +++....+..+..+. .++.|+|
T Consensus        83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             hhhcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            5 667789999888999999999999999999998 45544333567788999976 566655566677665 6889999


Q ss_pred             cCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEccc-CcccccCCc
Q 002360          681 AYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISM-NNFSGEIPV  759 (931)
Q Consensus       681 s~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~-N~l~~~ip~  759 (931)
                      ++|+++...+..| ...+                                            ++.+++++ |.++...+.
T Consensus       162 ~~N~i~~i~~~~f-~~~~--------------------------------------------L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          162 NKNGIQEIHNSAF-NGTQ--------------------------------------------LDELNLSDNNNLEELPND  196 (350)
T ss_dssp             CSSCCCEECTTSS-TTEE--------------------------------------------EEEEECTTCTTCCCCCTT
T ss_pred             ccccccCCChhhc-cccc--------------------------------------------hhHHhhccCCcccCCCHH
Confidence            9999985434333 2222                                            47899985 566644345


Q ss_pred             cccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCcccc
Q 002360          760 EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       760 ~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      .|..+++|++|||++|+|+ .+|..  .+.+|+.|.+.++.--..+| .+.++++|+.++++++.-.
T Consensus       197 ~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~c  259 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC  259 (350)
T ss_dssp             TTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHHH
T ss_pred             HhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCccc
Confidence            6899999999999999999 55542  35566677666655455777 4889999999999876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=2.6e-20  Score=213.28  Aligned_cols=190  Identities=28%  Similarity=0.389  Sum_probs=136.7

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      .+++.|++++|++++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|+.|++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            367888888888877 55544  267888888888887 566   346788888888888876 555 544  7888888


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|++++ +|.    .+++|+.|++++|.+++ +|.   .+++|+.|+|++|++++ +|. |.  ++             
T Consensus       128 s~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~-------------  181 (571)
T 3cvr_A          128 DNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ES-------------  181 (571)
T ss_dssp             CSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TT-------------
T ss_pred             CCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CC-------------
Confidence            8888874 666    36788888888888875 554   46778888888888775 554 43  22             


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC-------CEEEccCCcCcccCCcC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL-------QSLNLSHNLFTGRIPDN  784 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L-------~~L~Ls~N~l~~~ip~~  784 (931)
                                                     |+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..
T Consensus       182 -------------------------------L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          182 -------------------------------LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             -------------------------------CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred             -------------------------------CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence                                           367888888887 5665 543  66       88888888887 67777


Q ss_pred             ccCcCCCCEEeccCCcCcccCcccccCCCC
Q 002360          785 IGVMRSIESLDFSANQLSGQIPQSMSNLSF  814 (931)
Q Consensus       785 l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~  814 (931)
                      +..+++|+.|+|++|++++.+|..+..++.
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            777888888888888888888877766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=6.4e-20  Score=209.98  Aligned_cols=183  Identities=23%  Similarity=0.355  Sum_probs=156.8

Q ss_pred             CCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEE
Q 002360          576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILI  655 (931)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  655 (931)
                      .+|+.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|++|++++|++++ +|. +. .  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEE
Confidence            389999999999996 77766  389999999999999 566   457999999999999995 887 54 2  999999


Q ss_pred             ccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhh
Q 002360          656 LRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVE  735 (931)
Q Consensus       656 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (931)
                      +++|++++ +|.   .+++|+.|+|++|++++ +|.   .+                                       
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l---------------------------------------  159 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LP---------------------------------------  159 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CC---------------------------------------
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cC---------------------------------------
Confidence            99999997 665   68999999999999986 554   22                                       


Q ss_pred             hhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC-------CEEeccCCcCcccCccc
Q 002360          736 YNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI-------ESLDFSANQLSGQIPQS  808 (931)
Q Consensus       736 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~LdLs~N~l~~~~p~~  808 (931)
                           +.|+.|+|++|++++ +|. +.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..
T Consensus       160 -----~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~  225 (571)
T 3cvr_A          160 -----TSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPEN  225 (571)
T ss_dssp             -----TTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGG
T ss_pred             -----CCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHH
Confidence                 234899999999996 777 66  99999999999999 7887 665  77       99999999999 68988


Q ss_pred             ccCCCCCCeeeCCCccccccCCC
Q 002360          809 MSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       809 l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +..+++|++|+|++|+++|.+|.
T Consensus       226 l~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          226 ILSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGGSCTTEEEECCSSSCCHHHHH
T ss_pred             HhcCCCCCEEEeeCCcCCCcCHH
Confidence            88899999999999999998885

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.82  E-value=5.7e-20  Score=184.58  Aligned_cols=79  Identities=15%  Similarity=0.151  Sum_probs=38.1

Q ss_pred             EEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccc
Q 002360          746 IDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL  825 (931)
Q Consensus       746 LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l  825 (931)
                      |+|++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.       ++.|++|++++|++
T Consensus       105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKH  177 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHC
T ss_pred             EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhC
Confidence            33333333333333344455555555555555544444455555555555555554432       23455555555555


Q ss_pred             cccCCC
Q 002360          826 NGEIPS  831 (931)
Q Consensus       826 ~g~ip~  831 (931)
                      +|.+|.
T Consensus       178 ~g~ip~  183 (208)
T 2o6s_A          178 SGVVRN  183 (208)
T ss_dssp             TTTBBC
T ss_pred             Cceeec
Confidence            555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=1.4e-19  Score=181.80  Aligned_cols=181  Identities=19%  Similarity=0.191  Sum_probs=96.6

Q ss_pred             cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360          555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN  634 (931)
Q Consensus       555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  634 (931)
                      +.++.+++.++. +|..+  .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            344444444443 22222  234555555555555443334444555555555555554443334444444444444444


Q ss_pred             cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccc
Q 002360          635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYA  714 (931)
Q Consensus       635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  714 (931)
                      ++                         ++..+..+..+++|+.|++++|++++..+..+.++++|               
T Consensus        87 ~l-------------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L---------------  126 (208)
T 2o6s_A           87 QL-------------------------QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL---------------  126 (208)
T ss_dssp             CC-------------------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             cC-------------------------CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC---------------
Confidence            44                         43333334455555555555555554444334433333               


Q ss_pred             ccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEE
Q 002360          715 FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL  794 (931)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  794 (931)
                                                   +.|+|++|++++..+..+..+++|++|++++|.+.+.       +++|+.|
T Consensus       127 -----------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L  170 (208)
T 2o6s_A          127 -----------------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYL  170 (208)
T ss_dssp             -----------------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHH
T ss_pred             -----------------------------CEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHH
Confidence                                         5566666666654455566677777777777766543       3457777


Q ss_pred             eccCCcCcccCcccccCCCC
Q 002360          795 DFSANQLSGQIPQSMSNLSF  814 (931)
Q Consensus       795 dLs~N~l~~~~p~~l~~l~~  814 (931)
                      +++.|+++|.+|.+++.++.
T Consensus       171 ~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          171 SEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             HHHHHHCTTTBBCTTSSBCT
T ss_pred             HHHHHhCCceeeccCccccC
Confidence            77777777777777776654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=1.8e-19  Score=181.97  Aligned_cols=157  Identities=22%  Similarity=0.206  Sum_probs=127.1

Q ss_pred             cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCC-cccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFP-IQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      +.+++++|.++ .+|..+   ...+++|++++|++++..+ ..+..+++|+.|+|++|++++..+..|.+++.|      
T Consensus        14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------   83 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------   83 (220)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred             CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence            46777777776 566644   2456777888887776644 446778888888888888887766677666555      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.|+|++|++++..|..|..+++|++|+|++|++++..|..|
T Consensus        84 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  125 (220)
T 2v70_A           84 --------------------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF  125 (220)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred             --------------------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence                                                  788888888887777788899999999999999998889999


Q ss_pred             cCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       786 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      ..+++|+.|+|++|++++..|..|..+++|++|++++|+++|.++.
T Consensus       126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9999999999999999988899999999999999999999987763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=4e-19  Score=193.84  Aligned_cols=240  Identities=17%  Similarity=0.131  Sum_probs=175.3

Q ss_pred             cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccc-hhhccCCCCcE-EecC
Q 002360          555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP-TSFKNFSILEA-LDVG  632 (931)
Q Consensus       555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~-L~L~  632 (931)
                      ++++.++++++. +|..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| ..|.+++++.. +.++
T Consensus        12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            567888888886 56555  3579999999999996666778999999999999999876554 56788888765 6667


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccC-CccccccCccccccccccccCCCCCCccc
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAY-NSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      +|+++ .++...+..+++|++|++++|++.+..+..+.....+..+++.+ |++....+..|..+..             
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~-------------  154 (350)
T 4ay9_X           89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF-------------  154 (350)
T ss_dssp             ETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBS-------------
T ss_pred             CCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcch-------------
Confidence            78888 45444445789999999999999877776777777888888866 4555444444443322             


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC-CcCcccCC-cCccCcC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH-NLFTGRIP-DNIGVMR  789 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~-N~l~~~ip-~~l~~l~  789 (931)
                                                    .++.|+|++|+++ .+|.......+|++|++++ |.++ .+| ..|+.++
T Consensus       155 ------------------------------~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~  202 (350)
T 4ay9_X          155 ------------------------------ESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS  202 (350)
T ss_dssp             ------------------------------SCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEE
T ss_pred             ------------------------------hhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCc
Confidence                                          2488999999999 5666666678899999986 5666 565 5689999


Q ss_pred             CCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC
Q 002360          790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN  846 (931)
Q Consensus       790 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n  846 (931)
                      +|++||||+|+|+...+..+.+++   .|.+.+++--..+|....+..+....+..+
T Consensus       203 ~L~~LdLs~N~l~~lp~~~~~~L~---~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          203 GPVILDISRTRIHSLPSYGLENLK---KLRARSTYNLKKLPTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCC---EEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred             ccchhhcCCCCcCccChhhhccch---HhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence            999999999999965555555554   555444443456776556666665555443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=5.8e-19  Score=178.30  Aligned_cols=156  Identities=18%  Similarity=0.189  Sum_probs=129.8

Q ss_pred             cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360          627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD  706 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  706 (931)
                      +.++++++.++ .+|..+   .++|+.|++++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|       
T Consensus        14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L-------   82 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL-------   82 (220)
T ss_dssp             TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred             CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence            46777777776 677654   2578888888888887777788888888888888888888778877776665       


Q ss_pred             CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360          707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  786 (931)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  786 (931)
                                                           +.|+|++|++++..+..|..+++|++|+|++|++++..|..|.
T Consensus        83 -------------------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           83 -------------------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             -------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             -------------------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence                                                 7888999998866666678899999999999999988888999


Q ss_pred             CcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       787 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      .+++|+.|+|++|++++..+..+..+++|++|++++|++.+..+
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  169 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH  169 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence            99999999999999998888889999999999999999987643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.6e-18  Score=176.44  Aligned_cols=157  Identities=21%  Similarity=0.212  Sum_probs=133.6

Q ss_pred             CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      -+.++.+++.+. .+|..+   .++|++|++++|.+++..|..+..+++|+.|+|++|++.+..+..|..++.|      
T Consensus        21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------   90 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------   90 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence            456777777776 777654   3788888888888888888888889999999999999875555556665554      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.|+|++|++++..+..|..+++|++|+|++|+++ .+|..+
T Consensus        91 --------------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           91 --------------------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred             --------------------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence                                                  88999999999777777899999999999999999 889999


Q ss_pred             cCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCC
Q 002360          786 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       786 ~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      ..+++|+.|+|++|++++..+..+..+++|+.|++++|+++|.++.
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            9999999999999999987778899999999999999999988763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=1.1e-18  Score=184.54  Aligned_cols=186  Identities=20%  Similarity=0.309  Sum_probs=99.6

Q ss_pred             EECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360          557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL  636 (931)
Q Consensus       557 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  636 (931)
                      +.+..+.+++..+  +..+++|+.|++++|.+... + .+..+++|++|++++|++++..+  +..+++|++|++++|++
T Consensus        29 ~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l  102 (291)
T 1h6t_A           29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV  102 (291)
T ss_dssp             HHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhcCCCcccccc--hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC
Confidence            3444444443322  23455666666666666532 2 35556666666666666654433  55556666666666655


Q ss_pred             cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360          637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS  716 (931)
Q Consensus       637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  716 (931)
                      ++ +|. +. .+++|++|++++|++++.  ..+..+++|                                         
T Consensus       103 ~~-~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~L-----------------------------------------  136 (291)
T 1h6t_A          103 KD-LSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQL-----------------------------------------  136 (291)
T ss_dssp             CC-GGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTTC-----------------------------------------
T ss_pred             CC-Chh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCCC-----------------------------------------
Confidence            52 222 22 344444444444444421  123333444                                         


Q ss_pred             CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360          717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF  796 (931)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  796 (931)
                                                 +.|++++|++++.  ..+..+++|++|++++|++++..|  ++.+++|+.|++
T Consensus       137 ---------------------------~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L  185 (291)
T 1h6t_A          137 ---------------------------ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (291)
T ss_dssp             ---------------------------CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ---------------------------CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEEC
Confidence                                       4555555555532  345566666666666666664333  666666666666


Q ss_pred             cCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360          797 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       797 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      ++|++++ +| .+..+++|+.|++++|+++.
T Consensus       186 ~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          186 SKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            6666664 33 26666666666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=3e-18  Score=173.09  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=104.1

Q ss_pred             CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      ++.|++++|++++..|...+..+++|++|++++|++++..+..|..+++|+.|+|++|++++..|..|.++++|      
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------  107 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL------  107 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSC------
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCC------
Confidence            34555555555533333333356666667777776666666677778888888888888877666666665554      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.|+|++|++++..|..|..+++|++|+|++|++++..|..|
T Consensus       108 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  149 (220)
T 2v70_A          108 --------------------------------------KTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF  149 (220)
T ss_dssp             --------------------------------------CEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred             --------------------------------------CEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence                                                  788888888888888889999999999999999998889999


Q ss_pred             cCcCCCCEEeccCCcCcccCc
Q 002360          786 GVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       786 ~~l~~L~~LdLs~N~l~~~~p  806 (931)
                      ..+++|+.|++++|++++..+
T Consensus       150 ~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          150 DTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             TTCTTCCEEECCSCCEECSGG
T ss_pred             cCCCCCCEEEecCcCCcCCCc
Confidence            999999999999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=1.7e-18  Score=189.62  Aligned_cols=114  Identities=19%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhc-cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEcc
Q 002360          579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFK-NFSILEALDVGENELVGSIPTWIGERFSRLMILILR  657 (931)
Q Consensus       579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~  657 (931)
                      +.++++++.++ .+|..+.  +.++.|+|++|++++..+..|. ++++|+.|+|++|++++..+..+ ..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~-~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc-cCCCCCCEEECC
Confidence            57888888877 4665543  4577778888777776666665 67777777777777763332223 255666666666


Q ss_pred             CccccccCCcccCCCCCcCEEEccCCccccccCcccccc
Q 002360          658 SNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNF  696 (931)
Q Consensus       658 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l  696 (931)
                      +|++++..+..|..+++|+.|+|++|++++..|..|.++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  135 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM  135 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc
Confidence            666655555555555555555555555554444444433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.4e-18  Score=182.08  Aligned_cols=175  Identities=21%  Similarity=0.358  Sum_probs=121.3

Q ss_pred             cCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccc
Q 002360          622 NFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMAT  701 (931)
Q Consensus       622 ~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  701 (931)
                      .+++|+.|++++|.+. .++. +. .+++|++|++++|++++..+  +..+++|+.|++++|++++ +| .+..++.   
T Consensus        44 ~l~~L~~L~l~~~~i~-~~~~-~~-~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~---  113 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK---  113 (291)
T ss_dssp             HHHTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT---
T ss_pred             hcCcccEEEccCCCcc-cChh-Hh-cCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC---
Confidence            3444555555555544 2332 22 45555555555555554333  5566666666776666653 22 1333333   


Q ss_pred             cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC
Q 002360          702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI  781 (931)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i  781 (931)
                                                               |+.|++++|++++.  +.+..+++|++|++++|++++. 
T Consensus       114 -----------------------------------------L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-  149 (291)
T 1h6t_A          114 -----------------------------------------LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-  149 (291)
T ss_dssp             -----------------------------------------CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred             -----------------------------------------CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-
Confidence                                                     36777777777753  4688899999999999999954 


Q ss_pred             CcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCCCCCCCCCC
Q 002360          782 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLS  854 (931)
Q Consensus       782 p~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~l~~~~~~  854 (931)
                       ..++.+++|+.|++++|++++..|  +..+++|+.|++++|++++ +|....+..+...++.+|.+...|..
T Consensus       150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCCccc
Confidence             579999999999999999997666  8999999999999999987 45555677777788888876655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=2.7e-18  Score=199.09  Aligned_cols=187  Identities=18%  Similarity=0.308  Sum_probs=94.7

Q ss_pred             EECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360          557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL  636 (931)
Q Consensus       557 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  636 (931)
                      +.+..+.+.+..+  +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|++
T Consensus        26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l   99 (605)
T 1m9s_A           26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI   99 (605)
T ss_dssp             HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence            3444444443322  2344555555555555542 22 34555555555555555554433  55555555555555555


Q ss_pred             cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360          637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS  716 (931)
Q Consensus       637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  716 (931)
                      . .+| .+. .+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++++.  ..+..+++                  
T Consensus       100 ~-~l~-~l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~------------------  154 (605)
T 1m9s_A          100 K-DLS-SLK-DLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTK------------------  154 (605)
T ss_dssp             C-CCT-TST-TCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTT------------------
T ss_pred             C-CCh-hhc-cCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCC------------------
Confidence            4 233 222 455555555555555532  2345555555555555555532  22332222                  


Q ss_pred             CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360          717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF  796 (931)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  796 (931)
                                                |+.|+|++|++++.+|  +..+++|+.|+|++|+|++ +| .+..+++|+.|+|
T Consensus       155 --------------------------L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L  204 (605)
T 1m9s_A          155 --------------------------LDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLEL  204 (605)
T ss_dssp             --------------------------CSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEC
T ss_pred             --------------------------CCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEc
Confidence                                      2555556665554444  5555666666666666653 22 3555666666666


Q ss_pred             cCCcCccc
Q 002360          797 SANQLSGQ  804 (931)
Q Consensus       797 s~N~l~~~  804 (931)
                      ++|++++.
T Consensus       205 ~~N~l~~~  212 (605)
T 1m9s_A          205 FSQECLNK  212 (605)
T ss_dssp             CSEEEECC
T ss_pred             cCCcCcCC
Confidence            66665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=1.6e-17  Score=167.63  Aligned_cols=154  Identities=16%  Similarity=0.236  Sum_probs=102.4

Q ss_pred             CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360          579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS  658 (931)
Q Consensus       579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  658 (931)
                      +.++++++.++ .+|..+.  ++|++|++++|++++..+..|..+                         ++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l-------------------------~~L~~L~Ls~   65 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPY-------------------------KKLRRIDLSN   65 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTC-------------------------TTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCC-------------------------CCCCEEECCC
Confidence            45666666665 4454432  455555555555554444444444                         4455555555


Q ss_pred             ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhh
Q 002360          659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS  738 (931)
Q Consensus       659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (931)
                      |++++..|..|..+++|+.|+|++|++++..+..|.++++|                                       
T Consensus        66 N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L---------------------------------------  106 (220)
T 2v9t_B           66 NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL---------------------------------------  106 (220)
T ss_dssp             SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC---------------------------------------
T ss_pred             CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC---------------------------------------
Confidence            55554555566666677777777777764444444444443                                       


Q ss_pred             hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360          739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                           +.|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.+.
T Consensus       107 -----~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          107 -----QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             -----CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             -----CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence                 6777777777777777888888999999999999877777888899999999999988754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.73  E-value=7.4e-20  Score=210.96  Aligned_cols=154  Identities=21%  Similarity=0.237  Sum_probs=103.2

Q ss_pred             CccccchhhccCCCCcEEe-cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccC
Q 002360          612 LSGVIPTSFKNFSILEALD-VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP  690 (931)
Q Consensus       612 l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p  690 (931)
                      ..+..|..+..+++|+.|+ ++.|.+.            .|+.+.+++|.+....+      ..|+.|+|++|++++ +|
T Consensus       397 ~~~~~~~~l~~l~~L~~L~~l~~n~~~------------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp  457 (567)
T 1dce_A          397 PLLYEKETLQYFSTLKAVDPMRAAYLD------------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LC  457 (567)
T ss_dssp             TGGGHHHHHHHHHHHHHHCGGGHHHHH------------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CC
T ss_pred             cccCCHHHHHHHHhcccCcchhhcccc------------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-Cc
Confidence            4456666777777777776 5555432            23333444555543221      236777777777774 45


Q ss_pred             ccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEE
Q 002360          691 RCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSL  770 (931)
Q Consensus       691 ~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L  770 (931)
                      . +++++.|                                            +.|+|++|+++ .+|..++.+++|+.|
T Consensus       458 ~-~~~l~~L--------------------------------------------~~L~Ls~N~l~-~lp~~~~~l~~L~~L  491 (567)
T 1dce_A          458 H-LEQLLLV--------------------------------------------THLDLSHNRLR-ALPPALAALRCLEVL  491 (567)
T ss_dssp             C-GGGGTTC--------------------------------------------CEEECCSSCCC-CCCGGGGGCTTCCEE
T ss_pred             C-ccccccC--------------------------------------------cEeecCccccc-ccchhhhcCCCCCEE
Confidence            4 5555444                                            67777777777 677777777888888


Q ss_pred             EccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-cccccCCCCCCeeeCCCccccccCCCC
Q 002360          771 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNNLNGEIPSS  832 (931)
Q Consensus       771 ~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~N~l~g~ip~~  832 (931)
                      +|++|+|++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|+|++|++++.+|..
T Consensus       492 ~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          492 QASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             ECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             ECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence            888887774 66 6777778888888888887766 777777788888888888877776643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1.1e-17  Score=183.27  Aligned_cols=131  Identities=23%  Similarity=0.245  Sum_probs=111.8

Q ss_pred             ccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCccc-CCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          554 IEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIG-TLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       554 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      -+.+++++++++. +|..+.  +.++.|+|++|++++..+..+. ++++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        20 ~~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3689999999987 565443  4689999999999988787787 89999999999999998888889999999999999


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccc
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT  688 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  688 (931)
                      +|+++ .++...+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++.
T Consensus        97 ~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           97 SNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence            99998 45554445799999999999999988888999999999999999998843

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.72  E-value=5.3e-17  Score=165.09  Aligned_cols=155  Identities=21%  Similarity=0.311  Sum_probs=92.4

Q ss_pred             CEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC
Q 002360          579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS  658 (931)
Q Consensus       579 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~  658 (931)
                      +.++.+++.++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|+|++|++. .+|...+..+++|++|+|++
T Consensus        22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence            34555555554 3444332  55666666666666555555555566666666666554 34433322344444444444


Q ss_pred             ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhh
Q 002360          659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS  738 (931)
Q Consensus       659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (931)
                      |++++..+..+..+++|                                                               
T Consensus        98 N~l~~l~~~~~~~l~~L---------------------------------------------------------------  114 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVHL---------------------------------------------------------------  114 (229)
T ss_dssp             SCCCCCCTTTTTTCTTC---------------------------------------------------------------
T ss_pred             CcCCccChhHhCcchhh---------------------------------------------------------------
Confidence            44443333333444444                                                               


Q ss_pred             hccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360          739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                           +.|+|++|+++ .+|..+..+++|++|+|++|++++..+..|..+++|+.|++++|++++..+
T Consensus       115 -----~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          115 -----KELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             -----CEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             -----CeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence                 44555555555 566667778888888888888886666778888899999999998886654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.72  E-value=1.3e-17  Score=165.48  Aligned_cols=153  Identities=14%  Similarity=0.188  Sum_probs=86.2

Q ss_pred             CCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccccccc
Q 002360          623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATA  702 (931)
Q Consensus       623 l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~  702 (931)
                      +++|+.|++++|.+. .+| .+. .+++|++|++++|.+.  .+..+..+++|+.|++++|++++..|..+..+++|   
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---  114 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL---  114 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC---
T ss_pred             cCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC---
Confidence            334444444444444 333 222 3445555555555332  12244555666666666666655555555444433   


Q ss_pred             CCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCC
Q 002360          703 DSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP  782 (931)
Q Consensus       703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip  782 (931)
                                                               +.|++++|++++..|..++.+++|++|++++|++.+.+|
T Consensus       115 -----------------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~  153 (197)
T 4ezg_A          115 -----------------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM  153 (197)
T ss_dssp             -----------------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG
T ss_pred             -----------------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH
Confidence                                                     566666666666566666777777777777776333555


Q ss_pred             cCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccc
Q 002360          783 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       783 ~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                       .++.+++|+.|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus       154 -~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          154 -PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             -GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             -hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence             46777777777777777765 33 56777777777777777653

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1.2e-17  Score=164.73  Aligned_cols=87  Identities=23%  Similarity=0.317  Sum_probs=53.0

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      +.|+|++|++++.+|..|..+++|++|+|++|++++..|..|+.+++|++|+|++|++++.+|..+..+++|++|++++|
T Consensus        57 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            55555555555555555666666666666666666555555666666666666666666666666666666666666666


Q ss_pred             cccccCC
Q 002360          824 NLNGEIP  830 (931)
Q Consensus       824 ~l~g~ip  830 (931)
                      +++|.+|
T Consensus       137 ~l~c~c~  143 (192)
T 1w8a_A          137 PFNCNCH  143 (192)
T ss_dssp             CBCCSGG
T ss_pred             CccCcCc
Confidence            6665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.5e-17  Score=189.74  Aligned_cols=171  Identities=22%  Similarity=0.321  Sum_probs=131.3

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.|++++|.+... + .+..+++|+.|+|++|.+++..|  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+
T Consensus        42 L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEE
Confidence            46788888888888763 3 47778888888888888886544  77888888888888888753  3678888888888


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      |++|++.+ ++. +. .+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++.+..|  +..++.|           
T Consensus       116 Ls~N~l~~-l~~-l~-~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L-----------  177 (605)
T 1m9s_A          116 LEHNGISD-ING-LV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-----------  177 (605)
T ss_dssp             CTTSCCCC-CGG-GG-GCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTC-----------
T ss_pred             ecCCCCCC-Ccc-cc-CCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCC-----------
Confidence            88888874 443 43 688888888888888865  567788888888888888886655  5554444           


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR  780 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  780 (931)
                                                       +.|+|++|++++.  +.+..+++|+.|+|++|++++.
T Consensus       178 ---------------------------------~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          178 ---------------------------------QNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ---------------------------------CEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             ---------------------------------CEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence                                             7888888888853  3588888888888888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.71  E-value=7.3e-19  Score=202.66  Aligned_cols=105  Identities=26%  Similarity=0.394  Sum_probs=92.1

Q ss_pred             eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      |+.|+|++|++++ +|. ++.+++|+.|+|++|+|+ .+|..++.+++|+.|+|++|++++ +| .+..+++|++|+|++
T Consensus       443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence            5789999999986 676 999999999999999999 889999999999999999999996 67 899999999999999


Q ss_pred             ccccccC-CCC-CccCcccccccCCCCCCCCC
Q 002360          823 NNLNGEI-PSS-TQLQSFDASSFAGNDLCGAP  852 (931)
Q Consensus       823 N~l~g~i-p~~-~~~~~~~~~~~~~n~l~~~~  852 (931)
                      |++++.+ |.. ..+..+...++++|.+++.|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            9999886 654 56777888889999887754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=3.4e-17  Score=162.46  Aligned_cols=154  Identities=21%  Similarity=0.248  Sum_probs=100.1

Q ss_pred             CCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCE
Q 002360          598 TLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQI  677 (931)
Q Consensus       598 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  677 (931)
                      .+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+. .+++|++|++++|++++..+..+..+++|+.
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-PIS-GLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-GGT-TCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-hhh-cCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3445555555555555 223 3555555666666666443 222 333 5667777777777776666667777777777


Q ss_pred             EEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC
Q 002360          678 LDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI  757 (931)
Q Consensus       678 L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i  757 (931)
                      |++++|++++..|..+..+++|                                            +.|++++|++.+.+
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L--------------------------------------------~~L~L~~n~~i~~~  152 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKV--------------------------------------------NSIDLSYNGAITDI  152 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSC--------------------------------------------CEEECCSCTBCCCC
T ss_pred             EEecCCccCcHhHHHHhhCCCC--------------------------------------------CEEEccCCCCcccc
Confidence            8887777776666666555444                                            67788888733355


Q ss_pred             CccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcc
Q 002360          758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG  803 (931)
Q Consensus       758 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~  803 (931)
                      | .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus       153 ~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          153 M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            5 68888889999999999884 55 68888999999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.70  E-value=3.8e-18  Score=203.22  Aligned_cols=193  Identities=21%  Similarity=0.184  Sum_probs=119.0

Q ss_pred             EEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCc
Q 002360          556 FLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE  635 (931)
Q Consensus       556 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~  635 (931)
                      .++++.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            3445555554 45777888899999999999988 67777778999999999999998 778888999999999999999


Q ss_pred             ccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccc
Q 002360          636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAF  715 (931)
Q Consensus       636 l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~  715 (931)
                      ++ .+|..+. .+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+...                
T Consensus       282 l~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~----------------  342 (727)
T 4b8c_D          282 LT-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT----------------  342 (727)
T ss_dssp             CS-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH----------------
T ss_pred             CC-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh----------------
Confidence            98 8888876 7899999999999987 678889999999999999999998888776554322                


Q ss_pred             cCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCC--------cCcccCCcCccC
Q 002360          716 SGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHN--------LFTGRIPDNIGV  787 (931)
Q Consensus       716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N--------~l~~~ip~~l~~  787 (931)
                                                 ...++|++|.++|.+|..      |+.|++++|        .+.+.++..+..
T Consensus       343 ---------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~  389 (727)
T 4b8c_D          343 ---------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATD  389 (727)
T ss_dssp             ---------------------------HHHHHHHHCCCCCCCCCC-----------------------------------
T ss_pred             ---------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhc
Confidence                                       023678888888888764      446667776        444444555566


Q ss_pred             cCCCCEEeccCCcCcc
Q 002360          788 MRSIESLDFSANQLSG  803 (931)
Q Consensus       788 l~~L~~LdLs~N~l~~  803 (931)
                      +..++...+++|-+.+
T Consensus       390 l~~~~~~~ls~Nil~~  405 (727)
T 4b8c_D          390 LAKRTFTVLSYNTLCQ  405 (727)
T ss_dssp             ------------CCCG
T ss_pred             ccccceeeeecccccc
Confidence            6667777777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.3e-17  Score=171.57  Aligned_cols=79  Identities=19%  Similarity=0.405  Sum_probs=49.6

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      +.|+|++|++++ ++ .+..+++|++|+|++|++++ +| .++.+++|+.|++++|++++.  ..+..+++|+.|++++|
T Consensus       109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred             cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence            556666666653 22 46666666666666666663 33 466666677777777766655  45666667777777777


Q ss_pred             ccccc
Q 002360          824 NLNGE  828 (931)
Q Consensus       824 ~l~g~  828 (931)
                      ++++.
T Consensus       183 ~~~~~  187 (263)
T 1xeu_A          183 KCVNE  187 (263)
T ss_dssp             EEECC
T ss_pred             cccCC
Confidence            66654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=5e-17  Score=160.29  Aligned_cols=155  Identities=21%  Similarity=0.273  Sum_probs=119.3

Q ss_pred             cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCc-ccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI-QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      +++++++|.++ .+|..+.   .++++|++++|++++..+. .+..+++|+.|+|++|++++..|..|.+++.|      
T Consensus        11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred             CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence            56777777775 6776543   3788888888888766554 47788888888888888888778777776665      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.|+|++|++++..|..|..+++|++|+|++|++++.+|..|
T Consensus        81 --------------------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  122 (192)
T 1w8a_A           81 --------------------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             --------------------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS
T ss_pred             --------------------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh
Confidence                                                  788899999988888889999999999999999999999999


Q ss_pred             cCcCCCCEEeccCCcCcccCccc-ccCCCCCCeeeCCCccccccCCC
Q 002360          786 GVMRSIESLDFSANQLSGQIPQS-MSNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       786 ~~l~~L~~LdLs~N~l~~~~p~~-l~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      +.+++|++|+|++|++++..+.. +.  ..++...+..+...+..|.
T Consensus       123 ~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~  167 (192)
T 1w8a_A          123 EHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSST
T ss_pred             hcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCCh
Confidence            99999999999999999876521 11  1233334555666665554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=5.5e-18  Score=201.86  Aligned_cols=222  Identities=17%  Similarity=0.170  Sum_probs=124.5

Q ss_pred             CCccEEECcCCccccccCCcccCCCC-----CCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCC
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPR-----LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSIL  626 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~-----L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L  626 (931)
                      +.++.|+|.+|.+... +..+.....     +..++++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            3456666666666552 222111111     222334444444 55778889999999999999998 667677799999


Q ss_pred             cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360          627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD  706 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  706 (931)
                      ++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|+++++|       
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L-------  318 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNL-------  318 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTC-------
T ss_pred             CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCc-------
Confidence            99999999999 8998886 7999999999999999 77999999999999999999997 778878777666       


Q ss_pred             CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCC-CEEEccCCcCcccCCcCc
Q 002360          707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL-QSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L-~~L~Ls~N~l~~~ip~~l  785 (931)
                                                           +.|+|++|.|++.+|..+..+... ..|+|++|.++|.+|.. 
T Consensus       319 -------------------------------------~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~-  360 (727)
T 4b8c_D          319 -------------------------------------QFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE-  360 (727)
T ss_dssp             -------------------------------------CCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred             -------------------------------------cEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc-
Confidence                                                 789999999999999888665322 34889999999998874 


Q ss_pred             cCcCCCCEEeccCC--------cCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          786 GVMRSIESLDFSAN--------QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       786 ~~l~~L~~LdLs~N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                           |+.|++++|        .+.+..+..+..+..+....+++|-+.+...
T Consensus       361 -----l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~~  408 (727)
T 4b8c_D          361 -----RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHYA  408 (727)
T ss_dssp             ----------------------------------------------CCCGGGC
T ss_pred             -----cceeEeecccccccccCCccccccchhhcccccceeeeeccccccccC
Confidence                 566777777        5555556666777788888999998875443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=2e-17  Score=171.95  Aligned_cols=168  Identities=21%  Similarity=0.298  Sum_probs=93.8

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      ++..+++++|.+++..  .+..+++|+.|++++|.++ .+| .+..+++|++|++++|++++..+  +..+++|+.|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4555556666655432  3455566666666666655 233 45555566666666665554433  5555555555555


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccc
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL  712 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~  712 (931)
                      +|+++ .+|..                          .. ++|+.|++++|++++. + .+..+++              
T Consensus        94 ~N~l~-~l~~~--------------------------~~-~~L~~L~L~~N~l~~~-~-~l~~l~~--------------  129 (263)
T 1xeu_A           94 RNRLK-NLNGI--------------------------PS-ACLSRLFLDNNELRDT-D-SLIHLKN--------------  129 (263)
T ss_dssp             SSCCS-CCTTC--------------------------CC-SSCCEEECCSSCCSBS-G-GGTTCTT--------------
T ss_pred             CCccC-CcCcc--------------------------cc-CcccEEEccCCccCCC-h-hhcCccc--------------
Confidence            55554 23321                          11 4555555555555432 1 2333222              


Q ss_pred             ccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCC
Q 002360          713 YAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  792 (931)
Q Consensus       713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  792 (931)
                                                    |+.|+|++|++++. | .++.+++|++|+|++|++++.  ..+..+++|+
T Consensus       130 ------------------------------L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~  175 (263)
T 1xeu_A          130 ------------------------------LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN  175 (263)
T ss_dssp             ------------------------------CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred             ------------------------------ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence                                          25566666666543 3 466677777777777777754  5567777777


Q ss_pred             EEeccCCcCccc
Q 002360          793 SLDFSANQLSGQ  804 (931)
Q Consensus       793 ~LdLs~N~l~~~  804 (931)
                      .|++++|++++.
T Consensus       176 ~L~l~~N~~~~~  187 (263)
T 1xeu_A          176 WIDLTGQKCVNE  187 (263)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEeCCCCcccCC
Confidence            777777777755

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=148.75  Aligned_cols=131  Identities=21%  Similarity=0.257  Sum_probs=100.8

Q ss_pred             cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360          652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG  731 (931)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  731 (931)
                      +.+++++|.++ .+|..+  .++|+.|++++|+++ .+|..|.+++.|                                
T Consensus        13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L--------------------------------   56 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHL--------------------------------   56 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTC--------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCC--------------------------------
Confidence            45566666655 344433  246777777777776 566666555544                                


Q ss_pred             chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360          732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  811 (931)
Q Consensus       732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~  811 (931)
                                  +.|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..|..
T Consensus        57 ------------~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           57 ------------TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             ------------CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence                        77888888888777778888999999999999999888888999999999999999999777777888


Q ss_pred             CCCCCeeeCCCccccccCC
Q 002360          812 LSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       812 l~~L~~L~ls~N~l~g~ip  830 (931)
                      +++|+.|++++|++.|...
T Consensus       125 l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A          125 LSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             CTTCCEEECCSSCEECSGG
T ss_pred             CccccEEEeCCCCeecCCc
Confidence            9999999999999987653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1e-15  Score=147.51  Aligned_cols=132  Identities=18%  Similarity=0.261  Sum_probs=84.8

Q ss_pred             CcCcEEEccCcccc-ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeE
Q 002360          649 SRLMILILRSNKFH-GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL  727 (931)
Q Consensus       649 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  727 (931)
                      ++|++|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..++.                             
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-----------------------------   72 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPK-----------------------------   72 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-----------------------------
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-----------------------------
Confidence            45556666666555 45555555566666666666666543  33333333                             


Q ss_pred             EeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccC-CcCccCcCCCCEEeccCCcCcccCc
Q 002360          728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       728 ~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i-p~~l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                                     |+.|+|++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|++|++++|++++..+
T Consensus        73 ---------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A           73 ---------------LKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             ---------------CCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred             ---------------CCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence                           256666666666556666666777777777777777432 2567777777777887777775544


Q ss_pred             ---ccccCCCCCCeeeCCCcccc
Q 002360          807 ---QSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       807 ---~~l~~l~~L~~L~ls~N~l~  826 (931)
                         ..+..+++|++|++++|.+.
T Consensus       138 ~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          138 YRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HHHHHHTTCSSCCEETTEETTSC
T ss_pred             HHHHHHHhCccCcEecCCCCChh
Confidence               46777778888888877765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=7.5e-16  Score=145.18  Aligned_cols=129  Identities=19%  Similarity=0.250  Sum_probs=101.5

Q ss_pred             cCcCcEEEccCcccc-ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccccee
Q 002360          648 FSRLMILILRSNKFH-GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTS  726 (931)
Q Consensus       648 l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  726 (931)
                      .++|+.|++++|.++ +.+|..+..+++|+.|++++|++++.  ..+.+++.                            
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~----------------------------   65 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK----------------------------   65 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT----------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC----------------------------
Confidence            467788888888887 67777778888888888888888754  44444444                            


Q ss_pred             EEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCccc-CCcCccCcCCCCEEeccCCcCcccC
Q 002360          727 LVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR-IPDNIGVMRSIESLDFSANQLSGQI  805 (931)
Q Consensus       727 ~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~l~~L~~LdLs~N~l~~~~  805 (931)
                                      |+.|++++|.+++.+|..++.+++|++|++++|++++. .|..++.+++|++|++++|++++..
T Consensus        66 ----------------L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           66 ----------------LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             ----------------CCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             ----------------CCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence                            37888888888877888888888999999999998863 3477888999999999999998766


Q ss_pred             c---ccccCCCCCCeeeCCC
Q 002360          806 P---QSMSNLSFLNYLNLSN  822 (931)
Q Consensus       806 p---~~l~~l~~L~~L~ls~  822 (931)
                      +   ..+..+++|++||+++
T Consensus       130 ~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          130 DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHHCCCcccccCCC
Confidence            6   5788889999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.60  E-value=3.2e-15  Score=145.38  Aligned_cols=87  Identities=18%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      +.|++++|++++..+..+..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            56666777766555556778888888888888888777777788888888888888888666666788888888888888


Q ss_pred             cccccCC
Q 002360          824 NLNGEIP  830 (931)
Q Consensus       824 ~l~g~ip  830 (931)
                      +++|.+|
T Consensus       135 ~~~~~~~  141 (177)
T 2o6r_A          135 PWDCSCP  141 (177)
T ss_dssp             CBCCCHH
T ss_pred             CeeccCc
Confidence            8888766

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=1.9e-15  Score=145.59  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=104.2

Q ss_pred             CCCCcEEecCCCccc-ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccc
Q 002360          623 FSILEALDVGENELV-GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMAT  701 (931)
Q Consensus       623 l~~L~~L~L~~N~l~-~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  701 (931)
                      .++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++.  ..+..+++|+.|++++|++++.+|..+.++++|  
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--   97 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTA-EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL--   97 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCG-GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC--
T ss_pred             cccCCEEECCCCCCChhhHHHHHH-hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC--
Confidence            356777777777776 56666544 577778888888777755  667788888888888888887677666555554  


Q ss_pred             cCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccC-CccccCCCCCCEEEccCCcCccc
Q 002360          702 ADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI-PVEVTNLQGLQSLNLSHNLFTGR  780 (931)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~i-p~~l~~l~~L~~L~Ls~N~l~~~  780 (931)
                                                                +.|+|++|++++.. +..+..+++|++|++++|.+++.
T Consensus        98 ------------------------------------------~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A           98 ------------------------------------------THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             ------------------------------------------CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             ------------------------------------------CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence                                                      78888888888532 26788899999999999999855


Q ss_pred             CC---cCccCcCCCCEEeccCCcCcccCccc
Q 002360          781 IP---DNIGVMRSIESLDFSANQLSGQIPQS  808 (931)
Q Consensus       781 ip---~~l~~l~~L~~LdLs~N~l~~~~p~~  808 (931)
                      .+   ..+..+++|++||+++|.+. .+|.+
T Consensus       136 ~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          136 NDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             TTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             HHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            54   47888999999999999987 45543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=7.1e-16  Score=166.56  Aligned_cols=100  Identities=15%  Similarity=0.085  Sum_probs=60.4

Q ss_pred             cCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCC-EEEccCCcCCCccchhhhcccccccee
Q 002360          345 YELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE-SLDLSNNKLNGTVSEIHFVNLTKLVSF  423 (931)
Q Consensus       345 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L  423 (931)
                      ++|+++++++|+++...+.+|.++++|+++++.+| +....+.+|.++++|+ .+++.+ +++ .++...|.++++|+.+
T Consensus       226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred             CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence            56777777766666666666667777777777665 5545555666666676 666666 443 4444556666666666


Q ss_pred             ccCCceeEEecCCCCCCCccccEE
Q 002360          424 LANANSLIFKINPNWVPPFQLTVL  447 (931)
Q Consensus       424 ~l~~n~l~~~~~~~~~~~~~L~~L  447 (931)
                      +++.|.+.......|..+++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            655555555554455444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=3.5e-15  Score=161.15  Aligned_cols=240  Identities=12%  Similarity=0.058  Sum_probs=135.4

Q ss_pred             CccccEEEcccCCCc--cccchhhhccCCCCCCccEEECcCCccccccCCcccC--------CCCCCEEecCCCcceecC
Q 002360          523 LLLGSIFDLSNNALS--GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN--------WPRLRTLNLGNNNFTGSL  592 (931)
Q Consensus       523 ~~~l~~l~ls~n~l~--~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~--------l~~L~~L~Ls~n~l~~~~  592 (931)
                      +.+|+.+|+++|++.  ......       .+.+..+.+..|.   +.+.+|.+        +++|+.|++.+ .++.+-
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~-------~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~  116 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT-------YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE  116 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS-------SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC
T ss_pred             hccCeEEecCcceeEEecCcccc-------ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchh
Confidence            367888888888877  211111       1223444444443   23456666        88888888888 777666


Q ss_pred             CCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc---ccCchhHHhhcCcCc-----------------
Q 002360          593 PMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV---GSIPTWIGERFSRLM-----------------  652 (931)
Q Consensus       593 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~~l~~L~-----------------  652 (931)
                      +.+|.+|++|+.+++++|.+..+.+..|.++.++..+.+..+...   ..+....+..+..|+                 
T Consensus       117 ~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~  196 (329)
T 3sb4_A          117 DAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMK  196 (329)
T ss_dssp             TTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHH
T ss_pred             HHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhh
Confidence            777888888888888888887777778888777777776663321   011111111233333                 


Q ss_pred             ---------EEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCcccc
Q 002360          653 ---------ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVE  723 (931)
Q Consensus       653 ---------~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~  723 (931)
                               .+.+.++-...........+++|+.++|++|+++...+.+|.++++|                        
T Consensus       197 ~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L------------------------  252 (329)
T 3sb4_A          197 AGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL------------------------  252 (329)
T ss_dssp             TTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC------------------------
T ss_pred             cccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC------------------------
Confidence                     22222221110000000124566666666666654444455554444                        


Q ss_pred             ceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCC-EEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          724 DTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                                          +.|+|++| ++...+..|.++++|+ .+++.+ .++..-+.+|.++++|+.+++++|+++
T Consensus       253 --------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          253 --------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             --------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             --------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence                                55666665 5544455566666666 666666 555444556666666666666666666


Q ss_pred             ccCcccccCCCCCCeee
Q 002360          803 GQIPQSMSNLSFLNYLN  819 (931)
Q Consensus       803 ~~~p~~l~~l~~L~~L~  819 (931)
                      ...+..|.++++|+.++
T Consensus       311 ~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECTTTTCTTCCCCEEE
T ss_pred             ccchhhhcCCcchhhhc
Confidence            55555666666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=1.1e-14  Score=143.24  Aligned_cols=129  Identities=19%  Similarity=0.256  Sum_probs=101.2

Q ss_pred             cEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCC
Q 002360          627 EALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSD  706 (931)
Q Consensus       627 ~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  706 (931)
                      +++++++|.++ .+|..+   .++|++|++++|.++ .+|..+..+++|+.|+|++|++++..+..|.+++.|       
T Consensus        13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L-------   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-------   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred             CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence            45667777766 566543   246777777777776 566677778888888888888887666667666555       


Q ss_pred             CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360          707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  786 (931)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  786 (931)
                                                           +.|+|++|++++..|..|..+++|++|+|++|++++..+..|.
T Consensus        81 -------------------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  123 (193)
T 2wfh_A           81 -------------------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN  123 (193)
T ss_dssp             -------------------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             -------------------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhh
Confidence                                                 7788888888877778899999999999999999976666799


Q ss_pred             CcCCCCEEeccCCcCccc
Q 002360          787 VMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       787 ~l~~L~~LdLs~N~l~~~  804 (931)
                      .+++|+.|++++|++.+.
T Consensus       124 ~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A          124 DLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             TCTTCCEEECCSSCEECS
T ss_pred             cCccccEEEeCCCCeecC
Confidence            999999999999999764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=1.8e-14  Score=140.15  Aligned_cols=133  Identities=18%  Similarity=0.164  Sum_probs=107.5

Q ss_pred             CcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          626 LEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       626 L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      .+.+++++|.++ .+|..+   .++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.+++.|      
T Consensus         9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------   78 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------   78 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred             CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc------
Confidence            456777777776 566543   4678888888888887666677888899999999998886666556665554      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.|+|++|++++..+..+..+++|++|++++|++++..+..+
T Consensus        79 --------------------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~  120 (177)
T 2o6r_A           79 --------------------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF  120 (177)
T ss_dssp             --------------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             --------------------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence                                                  789999999997777778999999999999999997666667


Q ss_pred             cCcCCCCEEeccCCcCcccCc
Q 002360          786 GVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       786 ~~l~~L~~LdLs~N~l~~~~p  806 (931)
                      ..+++|++|++++|++++..|
T Consensus       121 ~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          121 DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcccCEEEecCCCeeccCc
Confidence            899999999999999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=8.2e-15  Score=138.00  Aligned_cols=129  Identities=19%  Similarity=0.153  Sum_probs=105.7

Q ss_pred             CCCccEEECcCCccc-cccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEE
Q 002360          551 SKNIEFLKLSTNHFS-EGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL  629 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L  629 (931)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367889999999988 66788888899999999999998865  678888999999999999988788888888999999


Q ss_pred             ecCCCccccc-CchhHHhhcCcCcEEEccCccccccCC---cccCCCCCcCEEEccC
Q 002360          630 DVGENELVGS-IPTWIGERFSRLMILILRSNKFHGDFP---IQLCRLASLQILDVAY  682 (931)
Q Consensus       630 ~L~~N~l~~~-~p~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~  682 (931)
                      ++++|++++. .+..+. .+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999998752 224444 78889999999998887655   4677888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.51  E-value=2.8e-16  Score=156.00  Aligned_cols=154  Identities=21%  Similarity=0.282  Sum_probs=98.7

Q ss_pred             ccCCCCcEEecCCCcccccCch------hHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccc
Q 002360          621 KNFSILEALDVGENELVGSIPT------WIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCIN  694 (931)
Q Consensus       621 ~~l~~L~~L~L~~N~l~~~~p~------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  694 (931)
                      .....++.++++.+.+.|.+|.      .+. .+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~-~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLS-TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHH-HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHh-cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            3444555555555555555443      444 56677777777776665 45 6666677777777777766 4454443


Q ss_pred             ccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccC
Q 002360          695 NFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSH  774 (931)
Q Consensus       695 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~  774 (931)
                      .+++                                            |+.|++++|++++ +| .+..+++|++|++++
T Consensus        91 ~~~~--------------------------------------------L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           91 VADT--------------------------------------------LEELWISYNQIAS-LS-GIEKLVNLRVLYMSN  124 (198)
T ss_dssp             HHHH--------------------------------------------CSEEEEEEEECCC-HH-HHHHHHHSSEEEESE
T ss_pred             cCCc--------------------------------------------CCEEECcCCcCCc-CC-ccccCCCCCEEECCC
Confidence            3333                                            3677777777775 34 577777788888888


Q ss_pred             CcCcccCC-cCccCcCCCCEEeccCCcCcccCccc----------ccCCCCCCeeeCCCcccc
Q 002360          775 NLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQS----------MSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       775 N~l~~~ip-~~l~~l~~L~~LdLs~N~l~~~~p~~----------l~~l~~L~~L~ls~N~l~  826 (931)
                      |++++..+ ..+..+++|++|++++|++++.+|..          +..+++|++||  +|+++
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            87774222 35777778888888888887766653          67778888777  56554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.49  E-value=6.7e-13  Score=146.05  Aligned_cols=218  Identities=11%  Similarity=0.098  Sum_probs=142.9

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      +|+.+.+.. .++.+.+.+|.+|++|+.+++++|+++.....+|. +++|+.+.+..+ ++.+....|.++++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            467777765 56666667788888888888888888765555665 578888888744 666677778888888888887


Q ss_pred             CCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccc-----cccCccccccccccccCCCCC
Q 002360          633 ENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLL-----GTIPRCINNFSAMATADSSDQ  707 (931)
Q Consensus       633 ~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~~~~~~~  707 (931)
                      +| ++ .++...|.+ .+|+.+.+ .+.++..-+.+|.++++|+.+++.+|.+.     ...+.+|.++++|        
T Consensus       235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L--------  302 (401)
T 4fdw_A          235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKL--------  302 (401)
T ss_dssp             TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTC--------
T ss_pred             CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccC--------
Confidence            65 44 566666644 67888888 34455556677788888888888777664     2223344444443        


Q ss_pred             CccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccC
Q 002360          708 SSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  787 (931)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~  787 (931)
                                                          +.++|. +.++..-...|.++++|+.++|..| ++..-+.+|.+
T Consensus       303 ------------------------------------~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~  344 (401)
T 4fdw_A          303 ------------------------------------ARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN  344 (401)
T ss_dssp             ------------------------------------CEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred             ------------------------------------CeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence                                                555665 3355444556666677777777444 55445566666


Q ss_pred             cCCCCEEeccCCcCcccCcccccCCC-CCCeeeCCCcc
Q 002360          788 MRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNN  824 (931)
Q Consensus       788 l~~L~~LdLs~N~l~~~~p~~l~~l~-~L~~L~ls~N~  824 (931)
                      + +|+.+++++|.+....+..|.+++ .++.+.+..+.
T Consensus       345 ~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          345 T-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             S-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             C-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            6 677777777766655555566553 55566655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.49  E-value=3.7e-14  Score=137.59  Aligned_cols=81  Identities=15%  Similarity=0.190  Sum_probs=50.0

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCc--CccCcCCCCEEeccCCcCcccCccc----ccCCCCCCe
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQS----MSNLSFLNY  817 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~--~l~~l~~L~~LdLs~N~l~~~~p~~----l~~l~~L~~  817 (931)
                      +.|+|++|++++..|..+..+++|++|+|++|+++ .+|.  .++.+++|+.|++++|+++ .+|..    +..+++|++
T Consensus        67 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           67 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             CEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             CEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            45555555555433333466666667777777665 4554  5666777777777777776 34443    667777777


Q ss_pred             eeCCCcccc
Q 002360          818 LNLSNNNLN  826 (931)
Q Consensus       818 L~ls~N~l~  826 (931)
                      ||+++|...
T Consensus       145 Ld~~~n~~~  153 (176)
T 1a9n_A          145 LDFQKVKLK  153 (176)
T ss_dssp             ETTEECCHH
T ss_pred             eCCCcCCHH
Confidence            777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=5.5e-14  Score=136.37  Aligned_cols=135  Identities=17%  Similarity=0.176  Sum_probs=103.1

Q ss_pred             hccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccc
Q 002360          620 FKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAM  699 (931)
Q Consensus       620 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  699 (931)
                      +..+++|+.|++++|+++ .+|. +....++|++|++++|.+++.  ..+..+++|+.|++++|++++..|..+..+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            455677777777777776 4554 332334788888888888765  567888899999999999886544444555554


Q ss_pred             cccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCc--cccCCCCCCEEEccCCcC
Q 002360          700 ATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPV--EVTNLQGLQSLNLSHNLF  777 (931)
Q Consensus       700 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~--~l~~l~~L~~L~Ls~N~l  777 (931)
                                                                  +.|+|++|+++ .+|.  .+..+++|+.|++++|.+
T Consensus        91 --------------------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i  125 (176)
T 1a9n_A           91 --------------------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV  125 (176)
T ss_dssp             --------------------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG
T ss_pred             --------------------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC
Confidence                                                        78999999996 5665  788999999999999999


Q ss_pred             cccCCcC----ccCcCCCCEEeccCCcCccc
Q 002360          778 TGRIPDN----IGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       778 ~~~ip~~----l~~l~~L~~LdLs~N~l~~~  804 (931)
                      + .+|..    ++.+++|+.||+++|.+...
T Consensus       126 ~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~  155 (176)
T 1a9n_A          126 T-NKKHYRLYVIYKVPQVRVLDFQKVKLKER  155 (176)
T ss_dssp             G-GSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred             C-CcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence            8 66764    88999999999999988643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=1.3e-13  Score=132.63  Aligned_cols=89  Identities=20%  Similarity=0.195  Sum_probs=78.7

Q ss_pred             eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      ++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus        32 l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           32 TQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            47888999999888888899999999999999999977777789999999999999999987777899999999999999


Q ss_pred             ccccccCCC
Q 002360          823 NNLNGEIPS  831 (931)
Q Consensus       823 N~l~g~ip~  831 (931)
                      |++++.++.
T Consensus       112 N~~~c~c~~  120 (170)
T 3g39_A          112 NPWDCACSD  120 (170)
T ss_dssp             SCBCTTBGG
T ss_pred             CCCCCCchh
Confidence            999988763

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.4e-15  Score=150.79  Aligned_cols=133  Identities=18%  Similarity=0.237  Sum_probs=81.9

Q ss_pred             hhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCcccccccc
Q 002360          619 SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA  698 (931)
Q Consensus       619 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  698 (931)
                      .+..+++|++|++++|++++ +| .+. .+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~-~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~  116 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLS-GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN  116 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHH-HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccc-cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence            55555666666666666553 55 333 4566666666666665 345445555666666666666654 22 3333333


Q ss_pred             ccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCC-ccccCCCCCCEEEccCCcC
Q 002360          699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP-VEVTNLQGLQSLNLSHNLF  777 (931)
Q Consensus       699 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l  777 (931)
                                                                  |+.|++++|++++..+ ..+..+++|++|++++|.+
T Consensus       117 --------------------------------------------L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A          117 --------------------------------------------LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             --------------------------------------------SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             --------------------------------------------CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence                                                        3677777777764322 4677788888888888888


Q ss_pred             cccCCcC----------ccCcCCCCEEeccCCcCcc
Q 002360          778 TGRIPDN----------IGVMRSIESLDFSANQLSG  803 (931)
Q Consensus       778 ~~~ip~~----------l~~l~~L~~LdLs~N~l~~  803 (931)
                      ++.+|..          +..+++|+.||  +|.++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          153 YNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             HHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             ccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            7766653          77788888887  666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=4e-13  Score=129.56  Aligned_cols=88  Identities=22%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      ++.|+|++|++++.+|..|+.+++|++|+|++|+|++..+..|+.+++|++|||++|+|++..+..|..+++|++|++++
T Consensus        35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            47888888888888888899999999999999999976666678999999999999999977666789999999999999


Q ss_pred             ccccccCC
Q 002360          823 NNLNGEIP  830 (931)
Q Consensus       823 N~l~g~ip  830 (931)
                      |++.+..+
T Consensus       115 N~~~c~~~  122 (174)
T 2r9u_A          115 NPWDCECR  122 (174)
T ss_dssp             SCBCTTBG
T ss_pred             CCcccccc
Confidence            99987755

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.43  E-value=4.8e-12  Score=139.21  Aligned_cols=199  Identities=12%  Similarity=0.108  Sum_probs=117.2

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.+++.+|+++.+...+|. +.+|+.+.+.++ +...-..+|.++++|+.+.+..+ ++.+...+|.+ .+|+.+.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~  254 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK  254 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence            44555555555555554444444 345555555533 44344445555555555555543 33344444544 4555555


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCcccc-----ccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFH-----GDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      +. +.++ .++...|.++++|+.+++.+|.+.     ...+.+|.++++|+.++|. +.+...-..+|.+++.|      
T Consensus       255 lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L------  325 (401)
T 4fdw_A          255 LP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKV------  325 (401)
T ss_dssp             EE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSC------
T ss_pred             eC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCc------
Confidence            52 3333 444444445566666666555443     3445567777777777776 34554445566655554      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  785 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l  785 (931)
                                                            +.++|..| ++..-+..|.++ +|+.+++++|.+....+..|
T Consensus       326 --------------------------------------~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          326 --------------------------------------TQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             --------------------------------------CEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             --------------------------------------cEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence                                                  56667444 554556678888 89999999998886667778


Q ss_pred             cCcC-CCCEEeccCCcCc
Q 002360          786 GVMR-SIESLDFSANQLS  802 (931)
Q Consensus       786 ~~l~-~L~~LdLs~N~l~  802 (931)
                      ..++ .++.|.+..+.+.
T Consensus       366 ~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          366 YGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCSCTTCCEEEECGGGHH
T ss_pred             cCCCCCccEEEeCHHHHH
Confidence            7774 7888888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.39  E-value=1.8e-11  Score=135.56  Aligned_cols=68  Identities=9%  Similarity=0.169  Sum_probs=44.1

Q ss_pred             cccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccCCcCCCccchhhhccccccceeccCC
Q 002360          357 IFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANA  427 (931)
Q Consensus       357 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~  427 (931)
                      ++.+...+|.++.+|+.+.+..+ ++.....+|.++++|+.+++.++ ++ .++...|.++++|+.+.+..
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccC
Confidence            34444556777777888877643 55444557777788888877654 32 55666777777777765543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=1.5e-12  Score=125.12  Aligned_cols=109  Identities=13%  Similarity=0.148  Sum_probs=82.0

Q ss_pred             CcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEee
Q 002360          651 LMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK  730 (931)
Q Consensus       651 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (931)
                      .+.+++++|.++. +|..+  .++|+.|+|++|++++..|..|.++++|                               
T Consensus        11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L-------------------------------   56 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQL-------------------------------   56 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTC-------------------------------
T ss_pred             CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccC-------------------------------
Confidence            4556666666653 44444  2667777777777776666666665554                               


Q ss_pred             cchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc
Q 002360          731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP  806 (931)
Q Consensus       731 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p  806 (931)
                                   +.|+|++|++++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|++++..+
T Consensus        57 -------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           57 -------------TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             -------------SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             -------------CEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence                         677888888876666677889999999999999997777789999999999999999986643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.38  E-value=1.3e-11  Score=136.59  Aligned_cols=62  Identities=16%  Similarity=0.174  Sum_probs=28.7

Q ss_pred             CCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecC
Q 002360          569 PDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVG  632 (931)
Q Consensus       569 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  632 (931)
                      ..+|.++.+|+.+++.++ ++..-..+|.+|++|+.+.+..+ ++.+...+|.+|++|+.+++.
T Consensus       313 ~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          313 EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            344444455555554432 33333344555555555555443 333444445555555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=3.7e-12  Score=122.68  Aligned_cols=106  Identities=12%  Similarity=0.168  Sum_probs=76.9

Q ss_pred             cEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeec
Q 002360          652 MILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKG  731 (931)
Q Consensus       652 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  731 (931)
                      +.+++++|+++ .+|..+.  ++|+.|+|++|++++..|..|.++++|                                
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------   59 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNL--------------------------------   59 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTC--------------------------------
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCC--------------------------------
Confidence            45555555554 4444442  567777777777776666666655554                                


Q ss_pred             chhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCccc
Q 002360          732 FLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       732 ~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                                  +.|+|++|+|++..+..|..+++|++|+|++|+|++..+..|+.+++|+.|+|++|++...
T Consensus        60 ------------~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           60 ------------QQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             ------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ------------CEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence                        6777777777765555678889999999999999966666689999999999999999854

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=7.9e-14  Score=151.96  Aligned_cols=69  Identities=20%  Similarity=0.237  Sum_probs=41.8

Q ss_pred             eeEEEcccCccccc----CCccccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCcccCcccccC
Q 002360          743 VRSIDISMNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQIPQSMSN  811 (931)
Q Consensus       743 L~~LdLs~N~l~~~----ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~  811 (931)
                      |+.|||++|.+++.    ++..+...++|++|+|++|.++..    ++..+...++|++|||++|.|+..-...+..
T Consensus       185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~  261 (372)
T 3un9_A          185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD  261 (372)
T ss_dssp             CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred             cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence            46666666666532    344556666777777777777642    2333445567777777777776554444433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=8.1e-13  Score=143.96  Aligned_cols=87  Identities=16%  Similarity=0.255  Sum_probs=67.5

Q ss_pred             ceeEEEcccCcccc----cCCccccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCccc----Ccccc
Q 002360          742 LVRSIDISMNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQ----IPQSM  809 (931)
Q Consensus       742 ~L~~LdLs~N~l~~----~ip~~l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~----~p~~l  809 (931)
                      .|+.|+|++|.++.    .++..+..+++|++|+|++|.++..    ++..+...++|+.|||++|.++..    ++..+
T Consensus       156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L  235 (372)
T 3un9_A          156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA  235 (372)
T ss_dssp             CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred             ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence            34667777776653    3455567889999999999999853    356677788999999999999864    44556


Q ss_pred             cCCCCCCeeeCCCcccccc
Q 002360          810 SNLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       810 ~~l~~L~~L~ls~N~l~g~  828 (931)
                      ...+.|++|||++|+++..
T Consensus       236 ~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          236 REHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHCSSCCEEECTTSSCCHH
T ss_pred             HhCCCCCEEeccCCCCCHH
Confidence            6679999999999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2.7e-11  Score=131.75  Aligned_cols=132  Identities=15%  Similarity=0.097  Sum_probs=82.0

Q ss_pred             EEEccCc-cccccCCcccCCCCCcCEEEccC-CccccccCccccccccccccCCCCCCccccccccCCCccccceeEEee
Q 002360          653 ILILRSN-KFHGDFPIQLCRLASLQILDVAY-NSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMK  730 (931)
Q Consensus       653 ~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  730 (931)
                      .++++++ .++ .+|. +..+++|+.|+|++ |++++..|..|.++++|                               
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L-------------------------------   58 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL-------------------------------   58 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence            4566766 666 3666 77777777777775 77776666666665554                               


Q ss_pred             cchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCc-ccc
Q 002360          731 GFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP-QSM  809 (931)
Q Consensus       731 ~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p-~~l  809 (931)
                                   +.|+|++|+|++.+|..|.++++|+.|+|++|+|++..+..|..++ |+.|+|++|++...-. .+|
T Consensus        59 -------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~  124 (347)
T 2ifg_A           59 -------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWL  124 (347)
T ss_dssp             -------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHH
T ss_pred             -------------CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHH
Confidence                         6777777777777777777777777777777777755555555555 7777777777764322 122


Q ss_pred             cCCCCCCeeeCCCccccccCCC
Q 002360          810 SNLSFLNYLNLSNNNLNGEIPS  831 (931)
Q Consensus       810 ~~l~~L~~L~ls~N~l~g~ip~  831 (931)
                      ..+.......+..+++++.-|.
T Consensus       125 ~~~~~~~~~~l~~~~~~C~~~~  146 (347)
T 2ifg_A          125 QRWEEEGLGGVPEQKLQCHGQG  146 (347)
T ss_dssp             HHHHHTTCSSCGGGCCCCSSSS
T ss_pred             HHHHHhCcccccccCCCCCCCh
Confidence            2222222333444555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.16  E-value=4.9e-11  Score=129.76  Aligned_cols=103  Identities=20%  Similarity=0.185  Sum_probs=73.3

Q ss_pred             EEecCCC-cccccCchhHHhhcCcCcEEEccC-ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCC
Q 002360          628 ALDVGEN-ELVGSIPTWIGERFSRLMILILRS-NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSS  705 (931)
Q Consensus       628 ~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~  705 (931)
                      .++.+++ .++ .+|. +. .+++|+.|+|++ |.+++..+..|..+++|+.|+|++|+|++..|..|.++++|      
T Consensus        12 ~v~~~~~n~l~-~ip~-l~-~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L------   82 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LP-GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL------   82 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SC-SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCC------
T ss_pred             EEEcCCCCCCC-ccCC-CC-CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCC------
Confidence            4577776 676 5776 54 577777777775 77777766777777777777777777777777777666555      


Q ss_pred             CCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCc
Q 002360          706 DQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFT  778 (931)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  778 (931)
                                                            +.|||++|+|++..+..+..++ |+.|+|++|.+.
T Consensus        83 --------------------------------------~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           83 --------------------------------------SRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             --------------------------------------CEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             --------------------------------------CEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence                                                  6777777777755555555555 777777777776

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.4e-08  Score=112.27  Aligned_cols=104  Identities=13%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|+.+.+. +.++.+...+|.+|.+|+.+++.++ ++.+-..+|.+|++|+.+.+..+ ++.+...+|.+|++|+.++
T Consensus       287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~  363 (394)
T 4gt6_A          287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE  363 (394)
T ss_dssp             CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred             ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence            4456666664 3455555667777777888877654 55455667777888888887544 5556667788888888888


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKF  661 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l  661 (931)
                      +.++....   ..++ .+.+|+.+.+..+.+
T Consensus       364 ~~~~~~~~---~~~~-~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          364 YSGSRSQW---NAIS-TDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ESSCHHHH---HTCB-CCCCC----------
T ss_pred             ECCceeeh---hhhh-ccCCCCEEEeCCCCE
Confidence            87775431   1222 466777777665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.1e-08  Score=113.13  Aligned_cols=109  Identities=8%  Similarity=0.086  Sum_probs=55.5

Q ss_pred             ccccCCCC-CCCEEeccCCcCCcCccccccCCCCCCEEEccCCc---CCCccchhhhccccccceeccCCceeEEecCCC
Q 002360          362 TNQLGQFK-RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNK---LNGTVSEIHFVNLTKLVSFLANANSLIFKINPN  437 (931)
Q Consensus       362 ~~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  437 (931)
                      ..+|.+++ .|+.+.+..+ ++.....+|.++.+|+.+.+..|.   ++ .+....|..+.+|+.+.+..+ +.......
T Consensus        56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a  132 (394)
T 4gt6_A           56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEA  132 (394)
T ss_dssp             TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred             HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhh
Confidence            34555553 4677766543 444445566777777777776553   22 455556667776666655433 33333444


Q ss_pred             CCCCccccEEEccCCCCCCCcChhhhccCCCcEEeCC
Q 002360          438 WVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDIS  474 (931)
Q Consensus       438 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~L~~L~Ls  474 (931)
                      |..+.+|+.+.+... +.......|..+..|+.+.+.
T Consensus       133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECC
T ss_pred             hhhhcccccccccce-eeeecccceeccccccccccc
Confidence            444445555544322 111223334444444444443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.85  E-value=2.7e-07  Score=101.31  Aligned_cols=73  Identities=12%  Similarity=0.222  Sum_probs=41.6

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCC
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSI  625 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~  625 (931)
                      +++|+.+.+.++.++.+...+|.+|.+|+.++|..+ ++.+-..+|.+|++|+.+.+..+ ++.+-..+|.+++.
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence            445556666555555555566666666666666543 44344456666666666666543 44444555655543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=1.7e-09  Score=116.52  Aligned_cols=64  Identities=14%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             cceeEEEcccCcccccCCcccc---CCCCCCEEEccCCcCccc----CCcCccCcCCCCEEeccCCcCccc
Q 002360          741 NLVRSIDISMNNFSGEIPVEVT---NLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQ  804 (931)
Q Consensus       741 ~~L~~LdLs~N~l~~~ip~~l~---~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdLs~N~l~~~  804 (931)
                      +.|+.|+|++|.+++..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++..
T Consensus       252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            3445555555555433222221   345566666666666542    333334556666666666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.75  E-value=1.1e-06  Score=96.53  Aligned_cols=95  Identities=16%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +.+|+.+.+..+ ++.+...+|.++++|+.+.+.++.++..-..+|.++++|+.+.+..+ ++.+...+|.+|++|+.+.
T Consensus       262 ~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~  339 (379)
T 4h09_A          262 CTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTIS  339 (379)
T ss_dssp             CTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             eehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEE
Confidence            455666666543 55556678999999999999999888777889999999999999755 6667778899999999999


Q ss_pred             cCCCcccccCchhHHhhcC
Q 002360          631 VGENELVGSIPTWIGERFS  649 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~  649 (931)
                      +..+ ++ .+....|.+++
T Consensus       340 ip~~-v~-~I~~~aF~~c~  356 (379)
T 4h09_A          340 YPKS-IT-LIESGAFEGSS  356 (379)
T ss_dssp             CCTT-CC-EECTTTTTTSS
T ss_pred             ECCc-cC-EEchhHhhCCC
Confidence            9765 54 56666554443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=8.5e-09  Score=111.00  Aligned_cols=65  Identities=17%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             CCCCCCEEEccCCcCcccCCcCcc---CcCCCCEEeccCCcCccc----CcccccCCCCCCeeeCCCccccc
Q 002360          763 NLQGLQSLNLSHNLFTGRIPDNIG---VMRSIESLDFSANQLSGQ----IPQSMSNLSFLNYLNLSNNNLNG  827 (931)
Q Consensus       763 ~l~~L~~L~Ls~N~l~~~ip~~l~---~l~~L~~LdLs~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~g  827 (931)
                      .+++|++|+|++|.+++..+..+.   .+++|++||||+|.+++.    ++..+..++.|+.|++++|.++.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            579999999999999854443333   578999999999999875    44555678999999999998864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1.3e-07  Score=96.10  Aligned_cols=84  Identities=25%  Similarity=0.353  Sum_probs=57.0

Q ss_pred             EEcccCccc---ccCCccccCCCCCCEEEccCCcCcc--cCCcCccCcCCCCEEeccCCcCcccCcccccCCC--CCCee
Q 002360          746 IDISMNNFS---GEIPVEVTNLQGLQSLNLSHNLFTG--RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS--FLNYL  818 (931)
Q Consensus       746 LdLs~N~l~---~~ip~~l~~l~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~--~L~~L  818 (931)
                      ++++.|+..   +.++....+++.|++|+||+|+|++  .+|..++.+++|+.|||++|++++.  ..+..+.  .|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            566666432   2222223567788888888888886  4556667788888888888888765  2344444  78888


Q ss_pred             eCCCccccccCCC
Q 002360          819 NLSNNNLNGEIPS  831 (931)
Q Consensus       819 ~ls~N~l~g~ip~  831 (931)
                      +|++|++++.+|.
T Consensus       226 ~L~~Npl~~~~~~  238 (267)
T 3rw6_A          226 WLDGNSLCDTFRD  238 (267)
T ss_dssp             ECTTSTTGGGCSS
T ss_pred             EccCCcCccccCc
Confidence            8888888877763

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=9.5e-08  Score=92.63  Aligned_cols=66  Identities=17%  Similarity=0.236  Sum_probs=35.1

Q ss_pred             ccCCCCCCEEEccCCcCccc----CCcCccCcCCCCEEec--cCCcCccc----CcccccCCCCCCeeeCCCcccc
Q 002360          761 VTNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDF--SANQLSGQ----IPQSMSNLSFLNYLNLSNNNLN  826 (931)
Q Consensus       761 l~~l~~L~~L~Ls~N~l~~~----ip~~l~~l~~L~~LdL--s~N~l~~~----~p~~l~~l~~L~~L~ls~N~l~  826 (931)
                      +...+.|++|+|++|.|+..    +...+...++|++|+|  ++|.++..    +...+...+.|++|++++|.+.
T Consensus        89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            33345555555555555532    2344445556666666  55666543    2333444466666666666653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=3.4e-07  Score=93.09  Aligned_cols=80  Identities=20%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             hhccceeEEEcccCcccc--cCCccccCCCCCCEEEccCCcCcccCCcCccCcC--CCCEEeccCCcCcccCcc------
Q 002360          738 SILNLVRSIDISMNNFSG--EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR--SIESLDFSANQLSGQIPQ------  807 (931)
Q Consensus       738 ~~~~~L~~LdLs~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~--~L~~LdLs~N~l~~~~p~------  807 (931)
                      ..++.|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..++  +|++|+|++|.+++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            347789999999999998  5667888999999999999999965  3456665  999999999999987763      


Q ss_pred             -cccCCCCCCeee
Q 002360          808 -SMSNLSFLNYLN  819 (931)
Q Consensus       808 -~l~~l~~L~~L~  819 (931)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             477889999988

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.25  E-value=2.6e-07  Score=89.51  Aligned_cols=112  Identities=14%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             CCCccEEECcCC-ccccc----cCCcccCCCCCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCccc----cc
Q 002360          551 SKNIEFLKLSTN-HFSEG----IPDCWMNWPRLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGV----IP  617 (931)
Q Consensus       551 ~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p  617 (931)
                      .+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            445555555555 44321    222334445555555555555421    222333445566666666665532    23


Q ss_pred             hhhccCCCCcEEec--CCCcccccCchhHH---hhcCcCcEEEccCcccc
Q 002360          618 TSFKNFSILEALDV--GENELVGSIPTWIG---ERFSRLMILILRSNKFH  662 (931)
Q Consensus       618 ~~~~~l~~L~~L~L--~~N~l~~~~p~~~~---~~l~~L~~L~L~~n~l~  662 (931)
                      ..+...++|++|+|  ++|.+.......+.   ...++|++|+|++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            44455566666666  55666533222121   13456666666666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=2.2e-05  Score=73.64  Aligned_cols=84  Identities=7%  Similarity=0.086  Sum_probs=41.6

Q ss_pred             CCCEEEccCCcCccccchhhccCCCCcEEecCCCc-ccccCchhHHh---hcCcCcEEEccCcc-ccccCCcccCCCCCc
Q 002360          601 SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE-LVGSIPTWIGE---RFSRLMILILRSNK-FHGDFPIQLCRLASL  675 (931)
Q Consensus       601 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~---~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L  675 (931)
                      .|+.|++++|.++..--..+.++++|+.|+|++|. +++.--..+..   ..++|++|+|++|. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            44555555555443333344455555555555553 43322222221   02356666666654 443322334556777


Q ss_pred             CEEEccCCc
Q 002360          676 QILDVAYNS  684 (931)
Q Consensus       676 ~~L~Ls~N~  684 (931)
                      +.|+++++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            777777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.49  E-value=4e-05  Score=71.86  Aligned_cols=84  Identities=12%  Similarity=0.095  Sum_probs=40.3

Q ss_pred             CCCEEEcCCCcccccccccccCCCCCCEEeccCCc-cccccCccccCCC----CCccEEEccCCCCCcccCCcccCCCCC
Q 002360          243 SLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR-LQGDISSLGLDNL----TSIQKLLLSWNDELGGKIPTSFGKLCK  317 (931)
Q Consensus       243 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~l----~~L~~L~L~~n~~~~~~~~~~~~~l~~  317 (931)
                      .|+.|+++++.++......+..+++|+.|+|++|. ++. ..-..+..+    ++|++|++++|..+++.....+..+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            35555555554444444444455555555555553 221 111112222    346666666665555544444555555


Q ss_pred             CcEEEcCCCc
Q 002360          318 LTSFSMASTK  327 (931)
Q Consensus       318 L~~L~l~~~~  327 (931)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666655553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00018  Score=68.82  Aligned_cols=87  Identities=22%  Similarity=0.164  Sum_probs=43.6

Q ss_pred             ccccEEEcccC-CCccccchhhhccCCCCCCccEEECcCCccccccCC----cccCCCCCCEEecCCCcceec----CCC
Q 002360          524 LLGSIFDLSNN-ALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPD----CWMNWPRLRTLNLGNNNFTGS----LPM  594 (931)
Q Consensus       524 ~~l~~l~ls~n-~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~----~p~  594 (931)
                      +.++.+++++| .+.......++..+...+.|+.|+|++|++......    .+..-+.|++|+|++|.|...    +-+
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            34455555553 554444444555555556666666666666543222    222335566666666665522    222


Q ss_pred             cccCCCCCCEEEccCC
Q 002360          595 SIGTLTSLRSLNLRNN  610 (931)
Q Consensus       595 ~~~~l~~L~~L~L~~n  610 (931)
                      .+..-+.|++|+|++|
T Consensus       121 aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HTTTTCCCSEEECCCC
T ss_pred             HHhhCCceeEEECCCC
Confidence            3344445555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.09  E-value=0.00077  Score=60.25  Aligned_cols=56  Identities=16%  Similarity=0.271  Sum_probs=26.1

Q ss_pred             EEEcccCccc-ccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCc
Q 002360          745 SIDISMNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  802 (931)
Q Consensus       745 ~LdLs~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~  802 (931)
                      .+|.+++.++ ..+|..+.  ++|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555554 23443221  23555555555555333344444455555555555443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.77  E-value=0.00067  Score=64.84  Aligned_cols=90  Identities=12%  Similarity=0.143  Sum_probs=42.5

Q ss_pred             cCCCCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCchhHHhh---cCcCcEEEccCc---ccccc--
Q 002360          597 GTLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGER---FSRLMILILRSN---KFHGD--  664 (931)
Q Consensus       597 ~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~---l~~L~~L~L~~n---~l~~~--  664 (931)
                      ..-+.|+.|+|++|.+...    +.+.+..-+.|+.|+|++|.|.+..-..+.+.   -+.|++|+|++|   .+...  
T Consensus        67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~  146 (197)
T 1pgv_A           67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE  146 (197)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred             hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence            3344555555555555422    22233344555566666655543322222221   234666666543   22211  


Q ss_pred             --CCcccCCCCCcCEEEccCCccc
Q 002360          665 --FPIQLCRLASLQILDVAYNSLL  686 (931)
Q Consensus       665 --~p~~l~~l~~L~~L~Ls~N~l~  686 (931)
                        +...+..-++|+.|+++.|.+.
T Consensus       147 ~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          147 MDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHHhCCCcCeEeccCCCcc
Confidence              2233444567777777766553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.65  E-value=0.0028  Score=56.53  Aligned_cols=60  Identities=17%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             CEEEccCCcCc-ccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccC
Q 002360          768 QSLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI  829 (931)
Q Consensus       768 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~i  829 (931)
                      ..++.+++.++ ..+|..+.  ++|+.|||++|+|+...+..|..+++|++|+|++|++.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            47999999997 46776543  57999999999999877888999999999999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	931
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	9e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-13
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-08
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-07
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	7e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.6 bits (197), Expect = 6e-17
 Identities = 64/290 (22%), Positives = 101/290 (34%), Gaps = 30/290 (10%)

Query: 574 NWPRLRTLNLGNNNFTG--SLPMSIGTLTSLRSLNLRNN-RLSGVIPTSFKNFSILEALD 630
              R+  L+L   N      +P S+  L  L  L +     L G IP +    + L  L 
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIP 690
           +     V         +   L+ L    N   G  P  +  L +L  +    N + G IP
Sbjct: 108 ITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 691 RCINNFSAMATADSSDQSS---DILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSID 747
               +FS + T+ +  ++     I   F+  N    D S  M           +      
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226

Query: 748 ISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 807
               N       +V   + L  L+L +N   G +P  +  ++ + SL+ S N L G+IPQ
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286

Query: 808 SMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCGAPLSSCT 857
              NL   +    +NN                        LCG+PL +CT
Sbjct: 287 G-GNLQRFDVSAYANNKC----------------------LCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 80.2 bits (196), Expect = 9e-17
 Identities = 74/396 (18%), Positives = 117/396 (29%), Gaps = 97/396 (24%)

Query: 12  CIESEREALLKLKHDLRDPSHRLASWIGDNGDCC--KWGGVLCGNFTGHVLELNLQNPFS 69
           C   +++ALL++K DL +P+  L+SW     DCC   W GVLC   T             
Sbjct: 3   CNPQDKQALLQIKKDLGNPTT-LSSW-LPTTDCCNRTWLGVLCDTDTQTY---------- 50

Query: 70  PDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQAR 129
                                    + +LDLSG +                         
Sbjct: 51  ------------------------RVNNLDLSGLNLPK---------------------- 64

Query: 130 FTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLV 189
               IP  L NL  L +L + G+   +     +                           
Sbjct: 65  -PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-------------------------- 97

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
              L  L  L ++   +        +   +L TLD S N   G +P  + +L +L  +  
Sbjct: 98  -AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP 309
             N+ + A+       + L                  L          L+       +  
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRN--------RLTGKIPPTFANLNLAFVDLSRNM 208

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369
                     S            S    +    ++  L  L LR  +I+G L   L Q K
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL 405
            L+ L +S N + G IP   G +   +    +NNK 
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 78.3 bits (191), Expect = 4e-16
 Identities = 53/281 (18%), Positives = 85/281 (30%), Gaps = 18/281 (6%)

Query: 363 NQLGQFKRLNFLGLSNNQMDG--SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
           +   Q  R+N L LS   +     IP SL  +  L  L +                LT+L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 421 VSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISD 480
                   ++   I         L  L+     L    P  +     L  +     RIS 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 481 KIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSI 540
            IP ++ +    +  + +S N++ G +P   +      +  S                ++
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS---------------RNM 208

Query: 541 FHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT 600
                     S           +              L  L+L NN   G+LP  +  L 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 601 SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIP 641
            L SLN+  N L G IP    N    +      N+ +   P
Sbjct: 269 FLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 59/273 (21%), Positives = 98/273 (35%), Gaps = 12/273 (4%)

Query: 160 TISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCE-LHHFPLLSSANFS 218
                +    + +L +S +NL K       + +L  L  L +     L      + A  +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 219 SLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL 278
            L  L ++     G IP  L  + +L  LD   N  +  +   +S L +L  ++ + NR+
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 279 QGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGI 338
            G I             + +S N   G   PT           S    +           
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-------- 213

Query: 339 FSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESL 398
                + +                 ++G  K LN L L NN++ G++P  L Q+  L SL
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 399 DLSNNKLNGTVSEIHFVNLTKL-VSFLANANSL 430
           ++S N L G + +    NL +  VS  AN   L
Sbjct: 274 NVSFNNLCGEIPQ--GGNLQRFDVSAYANNKCL 304

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.9 bits (193), Expect = 5e-16
 Identities = 73/420 (17%), Positives = 135/420 (32%), Gaps = 55/420 (13%)

Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
              +      L        +     +L  +  L        S  +  +  LN+L  ++  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
           +N+L        L NLT +  +L++ N         +   L  LT F+            
Sbjct: 75  NNQLTDITP---LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN----------- 120

Query: 335 ILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMAN 394
                   +        L         +N +     L+ L        G+    L  +AN
Sbjct: 121 -------QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLAN 173

Query: 395 LESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHL 454
           L +L+  +   N          LT L S +A  N +        +    L  L L    L
Sbjct: 174 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQL 231

Query: 455 GPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPS 514
             +    L     L DLD+++ +IS+  P +    +     L +  NQI    P     +
Sbjct: 232 --KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL---TELKLGANQISNISPLAGLTA 286

Query: 515 MPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMN 574
           +  +                              +  KN+ +L L  N+ S+  P    +
Sbjct: 287 LTNLELN-----------------ENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 575 WPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN 634
             +L+ L   NN  +     S+  LT++  L+  +N++S + P    N + +  L + + 
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 77.7 bits (190), Expect = 1e-15
 Identities = 63/389 (16%), Positives = 116/389 (29%), Gaps = 42/389 (10%)

Query: 323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLT-NQLGQFKRLNFLGLSNNQM 381
           + S  ++QD   I  IF+     E     L    +   ++   L Q   L    L    +
Sbjct: 1   LGSATITQDTP-INQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI 59

Query: 382 DGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPP 441
           DG     +  + NL  ++ SNN+L       +   L  ++        +    N   +  
Sbjct: 60  DG-----VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTG 114

Query: 442 FQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGN 501
             L   ++             +L+   N +   S        +             ++  
Sbjct: 115 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 174

Query: 502 QIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLST 561
                +    +    + +   L        +NN +S      I        N++ L L+ 
Sbjct: 175 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL------TNLDELSLNG 228

Query: 562 NHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP---- 617
           N   +       +   L  L+L NN  +   P  +  LT L  L L  N++S + P    
Sbjct: 229 NQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGL 284

Query: 618 ----------------TSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKF 661
                           +   N   L  L +  N +    P       ++L  L   +NK 
Sbjct: 285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFANNKV 341

Query: 662 HGDFPIQLCRLASLQILDVAYNSLLGTIP 690
                  L  L ++  L   +N +    P
Sbjct: 342 SD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 73.1 bits (178), Expect = 4e-14
 Identities = 70/388 (18%), Positives = 123/388 (31%), Gaps = 63/388 (16%)

Query: 70  PDDNEAYQRSMLVGKIN----PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNL 125
            D   A +   ++GK N     S  +L  +  L        GI+    +  L NL  +N 
Sbjct: 17  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINF 73

Query: 126 SQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASD 185
           S  + T + P  L NL+ L  + ++           +  +   L              + 
Sbjct: 74  SNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 186 SLLVINSLHSLKELKLSFCELHHFPLLSS------------------------------- 214
           + L    L S     +S           S                               
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 215 --ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
             A  ++L +L  + NQ     P     LT+L  L L  NQ     +G L+ L +L  L 
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDI 332
           L +N++       GL  LT     L    +++    P +          +          
Sbjct: 248 LANNQISNLAPLSGLTKLTE----LKLGANQISNISPLAGLTALTNLELNE--------- 294

Query: 333 SEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQM 392
           +++  I        L  L L    I     + +    +L  L  +NN++  S   SL  +
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKV--SDVSSLANL 350

Query: 393 ANLESLDLSNNKLNGTVSEIHFVNLTKL 420
            N+  L   +N+++      +   +T+L
Sbjct: 351 TNINWLSAGHNQISDLTPLANLTRITQL 378

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.0 bits (170), Expect = 3e-13
 Identities = 50/210 (23%), Positives = 83/210 (39%), Gaps = 22/210 (10%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L +L  L  + N    I  P  + +  NL  L+L+  +        L +L+NL  LDL+ 
Sbjct: 196 LTNLESLIATNNQISDI-TPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLAN 250

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                    ++ LSGL+ L  L +    +S       +           L   E     +
Sbjct: 251 NQIS----NLAPLSGLTKLTELKLGANQISN------ISPLAGLTALTNLELNENQLEDI 300

Query: 212 LSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVL 271
              +N  +LT L L  N      P  + +LT L+ L   +N+ +   +  L+ L ++  L
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWL 356

Query: 272 SLEDNRLQGDISSLGLDNLTSIQKLLLSWN 301
           S   N++        L NLT I +L L+  
Sbjct: 357 SAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.7 bits (164), Expect = 2e-12
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 17/166 (10%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +L  L +L  LDL+ N    +     L+ L  L  L L   + + + P           
Sbjct: 235 GTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 147 LDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL 206
                   E   E IS +S L  L +L + F N+S     +  ++SL  L+ L  +  ++
Sbjct: 292 ------LNENQLEDISPISNLKNLTYLTLYFNNIS----DISPVSSLTKLQRLFFANNKV 341

Query: 207 HHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
                L+  N +++  L    NQ     P  L NLT +  L L   
Sbjct: 342 SDVSSLA--NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 62.3 bits (150), Expect = 9e-11
 Identities = 68/433 (15%), Positives = 121/433 (27%), Gaps = 78/433 (18%)

Query: 179 NLSKAS-DSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSR 237
            L K +    +    L  +  L+     +     +     ++LT ++ S NQ     P  
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVE--YLNNLTQINFSNNQLTDITP-- 83

Query: 238 LGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLL 297
           L NLT L  + + +NQ                 L          + +L   N   +    
Sbjct: 84  LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143

Query: 298 LSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQI 357
           +S    L G             +       L+                      L     
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE------------------RLDISSN 185

Query: 358 FGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNL 417
                + L +   L  L  +NNQ+    PL +  + NL+ L L+ N+L    +     +L
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT---LASL 240

Query: 418 TKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTR 477
           T L       N +      + +   +LT L+L +  +    PL       L  L      
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLT--KLTELKLGANQISNISPLA-----GLTALTNLELN 293

Query: 478 ISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALS 537
            +     +  +++    YL +  N I    P      +                +NN +S
Sbjct: 294 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKL-----------QRLFFANNKVS 342

Query: 538 GSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIG 597
                                               N   +  L+ G+N  +   P  + 
Sbjct: 343 D------------------------------VSSLANLTNINWLSAGHNQISDLTP--LA 370

Query: 598 TLTSLRSLNLRNN 610
            LT +  L L + 
Sbjct: 371 NLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 6e-10
 Identities = 38/218 (17%), Positives = 74/218 (33%), Gaps = 37/218 (16%)

Query: 629 LDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGT 688
           L    N++    P  I    + L  L L  N+        L  L +L  LD+A N +   
Sbjct: 202 LIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL 256

Query: 689 IPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDI 748
            P  ++  + +            +   +G   +        +   +   S L  +  + +
Sbjct: 257 AP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 749 SMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 808
             NN S   PV   +L  LQ L  ++N  +                             S
Sbjct: 315 YFNNISDISPVS--SLTKLQRLFFANNKVSD--------------------------VSS 346

Query: 809 MSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFDASSFA 844
           ++NL+ +N+L+  +N ++   P +  T++     +  A
Sbjct: 347 LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 384

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 3e-14
 Identities = 51/261 (19%), Positives = 83/261 (31%), Gaps = 30/261 (11%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152
                LDL  N    I       +L NL  L L   + + + P     L  L+ L LS  
Sbjct: 31  PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 153 YFE-------------------LHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSL 193
             +                   +     S  +GL+ +  + +    L  +         +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
             L  ++++   +   P        SLT L L GN+      + L  L +L  L L  N 
Sbjct: 150 KKLSYIRIADTNITTIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 254 FNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN-----DELGGKI 308
            ++   G L+    L  L L +N+L      L   +   IQ + L  N            
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDFCP 264

Query: 309 PTSFGKLCKLTSFSMASTKLS 329
           P    K    +  S+ S  + 
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 9e-14
 Identities = 48/309 (15%), Positives = 98/309 (31%), Gaps = 52/309 (16%)

Query: 548 ENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNL 607
           ++   +   L L  N  +E     + N   L TL L NN  +   P +   L  L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 608 RNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPI 667
             N+L  +     K    L   +    ++  S+   +      ++ L     K  G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENG 144

Query: 668 QLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSL 727
               +  L  + +A  + + TIP                                     
Sbjct: 145 AFQGMKKLSYIRIADTN-ITTIP------------------------------------- 166

Query: 728 VMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 787
                      +   +  + +  N  +      +  L  L  L LS N  +     ++  
Sbjct: 167 ---------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 788 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDA--SSFAG 845
              +  L  + N+L  ++P  +++  ++  + L NNN++    +      ++   +S++G
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 846 NDLCGAPLS 854
             L   P+ 
Sbjct: 277 VSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.8 bits (159), Expect = 4e-12
 Identities = 48/291 (16%), Positives = 90/291 (30%), Gaps = 42/291 (14%)

Query: 218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNR 277
                LDL  N+          NL +L  L L +N+ +    G  + L  LE L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 278 LQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILG 337
           L      L      ++Q+L +  N                            +       
Sbjct: 91  L----KELPEKMPKTLQELRVHEN----------------------------EITKVRKS 118

Query: 338 IFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
           +F+G     +  L     +  G         K+L+++ +++  +     +  G   +L  
Sbjct: 119 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTE 175

Query: 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPR 457
           L L  NK+    +      L  L     + NS+    N +      L  L L +  L   
Sbjct: 176 LHLDGNKITKVDAA-SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV 234

Query: 458 FPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIF-----QYYYLNVSGNQI 503
                  +  +  + + +  IS      F    +      Y  +++  N +
Sbjct: 235 PGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 7e-12
 Identities = 45/271 (16%), Positives = 89/271 (32%), Gaps = 28/271 (10%)

Query: 578 LRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV 637
           LR +   +      +P  +        L+L+NN+++ +    FKN   L  L +  N++ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
              P        +L  L L  N+           L  L++ +     +  ++   +N   
Sbjct: 69  KISPGAFA-PLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEI 757
            +    +  +SS                     G        +  +  I I+  N +   
Sbjct: 128 VVELGTNPLKSS---------------------GIENGAFQGMKKLSYIRIADTNIT--- 163

Query: 758 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 817
            +       L  L+L  N  T     ++  + ++  L  S N +S     S++N   L  
Sbjct: 164 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 818 LNLSNNNLNGEIPSSTQLQSFDASSFAGNDL 848
           L+L+NN L          +         N++
Sbjct: 224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 4e-11
 Identities = 47/288 (16%), Positives = 93/288 (32%), Gaps = 34/288 (11%)

Query: 119 NLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFV 178
           +   L+L   + T +      NL NL  L L     ++   +    + L  LE LY+S  
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLKNLHTLILI--NNKISKISPGAFAPLVKLERLYLSKN 89

Query: 179 NLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRL 238
            L +  + +        + E +++      F  L   N   +  L  +  +  G      
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL---NQMIVVELGTNPLKSSGIENGAF 146

Query: 239 GNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLL 298
             +  L ++ +      +   G    L     L L+ N++    ++  L  L ++ KL L
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVDAAS-LKGLNNLAKLGL 202

Query: 299 SWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIF 358
           S+N         S      L    + + KL +    +           ++ +YL      
Sbjct: 203 SFNSI-SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY------IQVVYLHN---- 251

Query: 359 GHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
               N +      +F            P    + A+   + L +N + 
Sbjct: 252 ----NNISAIGSNDFCP----------PGYNTKKASYSGVSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-10
 Identities = 54/283 (19%), Positives = 89/283 (31%), Gaps = 44/283 (15%)

Query: 347 LESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
              L L+  +I           K L+ L L NN++    P +   +  LE L LS N+L 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 407 GTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQK 466
               ++      + +    N  + + K   N +    +  L               Q  K
Sbjct: 93  ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 467 KLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLG 526
           KL+ + I+ T I+                                  ++P  + PSL   
Sbjct: 151 KLSYIRIADTNIT----------------------------------TIPQGLPPSL--- 173

Query: 527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNN 586
           +   L  N ++      +        N+  L LS N  S        N P LR L+L NN
Sbjct: 174 TELHLDGNKITKVDAASLKG----LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 587 NFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
                 P  +     ++ + L NN +S +    F         
Sbjct: 230 KLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.7 bits (130), Expect = 2e-08
 Identities = 40/245 (16%), Positives = 82/245 (33%), Gaps = 20/245 (8%)

Query: 441 PFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSG 500
           P    +L+L++  +        +  K L+ L + + +IS   P AF   + +   L +S 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSK 88

Query: 501 NQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 560
           NQ+     K       L +  + +      + N      +  L                 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP------------- 135

Query: 561 TNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSF 620
               S      +    +L  + + + N T    +  G   SL  L+L  N+++ V   S 
Sbjct: 136 -LKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL 191

Query: 621 KNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDV 680
           K  + L  L +  N +       +        + +  +N      P  L     +Q++ +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL--NNNKLVKVPGGLADHKYIQVVYL 249

Query: 681 AYNSL 685
             N++
Sbjct: 250 HNNNI 254

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (171), Expect = 3e-13
 Identities = 50/446 (11%), Positives = 95/446 (21%), Gaps = 18/446 (4%)

Query: 219 SLTTLDLSGNQFQGQIPSRL-GNLTSLKHLDLYSNQFN----SAVLGWLSKLNDLEVLSL 273
            + +LD+   +      + L   L   + + L            +   L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 274 EDNRLQGD----ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLS 329
             N L       +          IQKL L      G         L  L +        +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 330 QDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSL 389
                 L +    +      L     +              +        ++  S     
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 390 GQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLEL 449
                +    L ++       ++    +T                               
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 450 RSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPK 509
            +           +L+         + +    + R                     G   
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 510 FDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIP 569
                +        L       +    S     L          I   +L      E   
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 570 DCWMNWPRLRTLNLGNNNFTG----SLPMSIGTLTSLRSLNLRNNRLSGVIPTSF----- 620
                   LR L L + + +     SL  ++    SLR L+L NN L             
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 621 KNFSILEALDVGENELVGSIPTWIGE 646
           +   +LE L + +      +   +  
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 8e-07
 Identities = 50/467 (10%), Positives = 105/467 (22%), Gaps = 52/467 (11%)

Query: 394 NLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCH 453
           +++SLD+   +L+            +L+  L                     V+ L  C 
Sbjct: 3   DIQSLDIQCEELSDA-------RWAELLPLLQQ-----------------CQVVRLDDCG 38

Query: 454 LGPR----FPLWLQLQKKLNDLDISSTRISDK----IPRAFWNSIFQYYYLNVSGNQIYG 505
           L           L++   L +L++ S  + D     + +       +   L++    + G
Sbjct: 39  LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

Query: 506 GVPKFDSPSMPLIITPSLLLGS-----------IFDLSNNALSGSIFHLICQGENFSKNI 554
                 S ++  + T   L  S           + +   +         +      + + 
Sbjct: 99  AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 158

Query: 555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG 614
           E L        +       N                  P  +  L         +N    
Sbjct: 159 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL 218

Query: 615 VIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLAS 674
               + K      AL   +   VG      G       +  L   +              
Sbjct: 219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 278

Query: 675 LQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLV 734
           L+  +      L            +                   +      S        
Sbjct: 279 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 338

Query: 735 EYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIGVMRS 790
               +   + +  +                  L+ L L+    +      +   +    S
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398

Query: 791 IESLDFSANQLSGQIPQSMS-----NLSFLNYLNLSNNNLNGEIPSS 832
           +  LD S N L       +          L  L L +   + E+   
Sbjct: 399 LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 54/458 (11%), Positives = 119/458 (25%), Gaps = 23/458 (5%)

Query: 243 SLKHLDLYSNQFNSAVLGWL-SKLNDLEVLSLEDNRLQG-DISSLG--LDNLTSIQKLLL 298
            ++ LD+   + + A    L   L   +V+ L+D  L       +   L    ++ +L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 299 SWNDELGGKIPTSFGKL-----CKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLR 353
             N+ LG        +      CK+   S+ +  L+     +L      +    E     
Sbjct: 63  RSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121

Query: 354 GCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIH 413
                  L                      S+  +  +          + K     +   
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 181

Query: 414 FVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDI 473
                +++      +    +                    +  +  L           D+
Sbjct: 182 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241

Query: 474 SSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSN 533
               +   +          + +      +  G + +       L            + + 
Sbjct: 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 301

Query: 534 NALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLP 593
                 +         + K+  F     +HFS  +           + N   +     L 
Sbjct: 302 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 361

Query: 594 MSIGTL-TSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGERF 648
             +G   + LR L L +  +S      +  +      L  LD+  N L  +    + E  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 649 ----SRLMILILRSNKFHGDFPIQLCRLA----SLQIL 678
                 L  L+L    +  +   +L  L     SL+++
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 2e-05
 Identities = 47/488 (9%), Positives = 118/488 (24%), Gaps = 54/488 (11%)

Query: 346 ELESLYLRGCQI-FGHLTNQLGQFKRLNFLGLSNNQMDG----SIPLSLGQMANLESLDL 400
           +++SL ++  ++        L   ++   + L +  +       I  +L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 401 SNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPL 460
            +N+L           +  ++  L   +              ++  L L++C L      
Sbjct: 63  RSNELGDV-------GVHCVLQGLQTPSC-------------KIQKLSLQNCCLTGAGCG 102

Query: 461 WLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIIT 520
            L    +            + +  A    + +         +         S +    + 
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162

Query: 521 PSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRT 580
                              +       E    N +  +       +G+ D       L+ 
Sbjct: 163 S-----------------VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 205

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLR---NNRLSGVIPTSFKNFSILEALDVGENELV 637
            + G  +        I    +               G+             L        
Sbjct: 206 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 265

Query: 638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFS 697
           G      G+    L               +       L    +     L ++     +F+
Sbjct: 266 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT 325

Query: 698 AMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE- 756
           A   +  S   +   +               ++          +++R + ++  + S   
Sbjct: 326 AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 385

Query: 757 ---IPVEVTNLQGLQSLNLSHNLFTGRIPDNIG-----VMRSIESLDFSANQLSGQIPQS 808
              +   +     L+ L+LS+N         +          +E L       S ++   
Sbjct: 386 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

Query: 809 MSNLSFLN 816
           +  L    
Sbjct: 446 LQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 2e-05
 Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 740 LNLVRSIDISMNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESL 794
           L++ +S+DI     S     E+   LQ  Q + L     T      I   + V  ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 795 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 827
           +  +N+L       +          +   +L  
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 170 LEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCEL--HHFPLLSSA--NFSSLTTLDL 225
           ++ L I    LS A  + L +  L   + ++L  C L       +SSA     +L  L+L
Sbjct: 4   IQSLDIQCEELSDARWAEL-LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 226 SGNQFQGQIPSRLG-----NLTSLKHLDLYSNQFN 255
             N+        +          ++ L L +    
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 551 SKNIEFLKLSTNHFS-EGIPDCWMNWPRLRTLNLGNNNFTG----SLPMSIGTLTSLRSL 605
           S +I+ L +     S     +      + + + L +   T      +  ++    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 606 NLRNNRLSGVIPTSF 620
           NLR+N L  V     
Sbjct: 61  NLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 7e-05
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 191 NSLHSLKELKLSFCELHHFPLLSSA----NFSSLTTLDLSGNQFQGQIPSRLG-----NL 241
                L+ L L+ C++      S A       SL  LDLS N        +L        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 242 TSLKHLDLYSNQFNSAVLGWLSKL----NDLEVLS 272
             L+ L LY   ++  +   L  L      L V+S
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 216 NFSSLTTLDLSGNQFQGQ----IPSRLGNLTSLKHLDLYSNQFNSAVLGWLSK-----LN 266
             S L  L L+           + + L    SL+ LDL +N    A +  L +       
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 267 DLEVLSLEDNRLQGDISSL 285
            LE L L D     ++   
Sbjct: 427 LLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 4/61 (6%)

Query: 95  LVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGM----IPHQLGNLSNLQYLDLS 150
           +  LD+   +    +  + L  L   + + L     T      I   L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 151 G 151
            
Sbjct: 64  S 64

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 51/444 (11%), Positives = 109/444 (24%), Gaps = 17/444 (3%)

Query: 267 DLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWN---DELGGKIPTSFGKLCKLTSFSM 323
           D++ L ++   L     +  L  L   Q + L      +     I ++      L   ++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 324 ASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDG 383
            S +L       +       + +++ L L+ C + G     L    R        +  D 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
            +  +  Q+     LD         +        +             FK          
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
              + +    L         L+ +   +   + R    I  +  +        N  G+  
Sbjct: 183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
              +          + T  +    I       L   +       E      E        
Sbjct: 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302

Query: 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSG------VIP 617
             E + +       L   +        S   S+            +N          +  
Sbjct: 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 362

Query: 618 TSFKNFSILEALDVGENELVGSIPTWIGERFSR---LMILILRSNKFHGDFPIQLCR--- 671
              +  S+L  L + + ++  S  + +         L  L L +N       +QL     
Sbjct: 363 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 422

Query: 672 --LASLQILDVAYNSLLGTIPRCI 693
                L+ L +        +   +
Sbjct: 423 QPGCLLEQLVLYDIYWSEEMEDRL 446

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 1e-10
 Identities = 44/275 (16%), Positives = 88/275 (32%), Gaps = 10/275 (3%)

Query: 580 TLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS 639
           T +        ++P+ I    + + + L  NR+S V   SF+    L  L +  N L   
Sbjct: 15  TTSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 640 IPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAM 699
                        + +  + +     P     L  L  L +    L    P      +A+
Sbjct: 72  DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131

Query: 700 ATADSSDQSSDIL--YAFSGDNKIVEDTSLVMKGFLVEYNSILNL--VRSIDISMNNFSG 755
                 D +   L    F     +        +   V   +   L  +  + +  N  + 
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191

Query: 756 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 815
             P    +L  L +L L  N  +    + +  +R+++ L  + N       ++    ++L
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWL 250

Query: 816 NYLNLSNNNLNGEIPSSTQLQSFDASSFAGNDLCG 850
                S++ +   +P     +       A NDL G
Sbjct: 251 QKFRGSSSEVPCSLPQRLAGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (146), Expect = 2e-10
 Identities = 45/256 (17%), Positives = 89/256 (34%), Gaps = 8/256 (3%)

Query: 576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENE 635
              + + L  N  +     S     +L  L L +N L+ +   +F   ++LE LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 636 LVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN 695
            + S+         RL  L L         P     LA+LQ L +  N+L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 696 FSAMATADSSDQSSDILYAFSGDN-KIVEDTSLVMKGFLVEYNSI---LNLVRSIDISMN 751
              +            +   +      ++   L        +      L  + ++ +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 752 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
           N S      +  L+ LQ L L+ N +         +   ++    S++++   +PQ ++ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 812 LSFLNYLNLSNNNLNG 827
                   L+ N+L G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 3e-09
 Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 23/281 (8%)

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
           ++P+ +   A  + + L  N+++   +   F     L     ++N L       +     
Sbjct: 25  AVPVGIP--AASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLAL 81

Query: 444 LTVLELRSCH-LGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQ 502
           L  L+L     L    P       +L+ L +    +  ++    +  +    YL +  N 
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELGPGLFRGLAALQYLYLQDNA 140

Query: 503 IYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTN 562
           +             L             L  N +S               +++ L L  N
Sbjct: 141 LQALPDDTFRDLGNLTH---------LFLHGNRISSVPERAFRG----LHSLDRLLLHQN 187

Query: 563 HFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
             +   P  + +  RL TL L  NN +     ++  L +L+ L L +N        +   
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPL 246

Query: 623 FSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHG 663
           ++ L+      +E+  S+P    +R +   +  L +N   G
Sbjct: 247 WAWLQKFRGSSSEVPCSLP----QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 49/245 (20%), Positives = 73/245 (29%), Gaps = 33/245 (13%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMI------------------ 134
                + L GN    +       +  NL  L L       +                   
Sbjct: 32  AASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 135 -------PHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSL 187
                  P     L  L  L L                GL+ L++LY+    L    D  
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDD- 147

Query: 188 LVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHL 247
                L +L  L L    +   P  +     SL  L L  N+     P    +L  L  L
Sbjct: 148 -TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGK 307
            L++N  ++     L+ L  L+ L L DN    D  +  L     +QK   S + E+   
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSS-EVPCS 263

Query: 308 IPTSF 312
           +P   
Sbjct: 264 LPQRL 268

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 50/289 (17%), Positives = 91/289 (31%), Gaps = 36/289 (12%)

Query: 217 FSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDN 276
            ++   + L GN+      +      +L  L L+SN          + L           
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL--------- 81

Query: 277 RLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEIL 336
                           +++L LS N +L    P +F  L +L +       L +   + L
Sbjct: 82  ----------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLH-----LDRCGLQEL 120

Query: 337 GIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLE 396
           G         L+ LYL+   +     +       L  L L  N++      +   + +L+
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 397 SLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGP 456
            L L  N++        F +L +L++    AN+L         P   L  L L       
Sbjct: 181 RLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239

Query: 457 RFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYG 505
                  L   L     SS+ +   +P+             ++ N + G
Sbjct: 240 DCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL----KRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (131), Expect = 1e-08
 Identities = 38/217 (17%), Positives = 57/217 (26%), Gaps = 14/217 (6%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
           ++ + S  E+      L   P          T L LS N       + L   T L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTALP---PDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 250 YSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIP 309
              +        L     L VL   D       S   L        +L    + L     
Sbjct: 63  DRAELT-----KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 310 TSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFK 369
            +   L +L    +   +L      +L               L    +       L   +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL-----SLANNNLTELPAGLLNGLE 172

Query: 370 RLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLN 406
            L+ L L  N +  +IP        L    L  N   
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 30/209 (14%), Positives = 54/209 (25%), Gaps = 24/209 (11%)

Query: 91  ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLS 150
           ++   + ++    +     +P  L    +   L+LS+          L   + L  L+L 
Sbjct: 8   KVASHLEVNCDKRNLT--ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 151 GVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELH--- 207
                   +    L  L  L+  +    +L     +L  +  L        S        
Sbjct: 64  RAELT-KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 208 ---------------HFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSN 252
                            P         L  L L+ N         L  L +L  L L  N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182

Query: 253 QFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
              + +       + L    L  N    +
Sbjct: 183 SLYT-IPKGFFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 2e-06
 Identities = 28/209 (13%), Positives = 52/209 (24%), Gaps = 6/209 (2%)

Query: 619 SFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQIL 678
                +    ++  +  L  ++P  +        IL L  N  +      L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 679 DVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS 738
           ++    L                   +   S  L   +     V D S      L     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 739 ILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNL-SHNLFTGRIPDNIGVMRSIESLDFS 797
                        N    +P  +            ++N  T      +  + ++++L   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 798 ANQLSGQIPQSMSNLSFLNYLNLSNNNLN 826
            N L   IP+       L +  L  N   
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 33/194 (17%), Positives = 56/194 (28%), Gaps = 18/194 (9%)

Query: 441 PFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSG 500
           P   T+L L    L       L    +L  L++    ++          +      +   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 501 NQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 560
             +        + ++  +    L                   L          ++ L L 
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLT-----------------SLPLGALRGLGELQELYLK 132

Query: 561 TNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSF 620
            N      P      P+L  L+L NNN T      +  L +L +L L+ N L   IP  F
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191

Query: 621 KNFSILEALDVGEN 634
               +L    +  N
Sbjct: 192 FGSHLLPFAFLHGN 205

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 9e-08
 Identities = 35/284 (12%), Positives = 97/284 (34%), Gaps = 23/284 (8%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
           DL+   L   +      G   S+ +   +   +   + + +   +  R++ ++L N+   
Sbjct: 6   DLTGKNLHPDVT-----GRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 590 G-SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERF 648
             +L   +   + L++L+L   RLS  I  +    S L  L++                 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 649 SRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS 708
              +  +  S  F          +A +       N     +     N      +    + 
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-----LSGYRKNLQKSDLSTLVRRC 174

Query: 709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDIS-MNNFSGEIPVEVTNLQGL 767
            ++++    D+ ++++          +    LN ++ + +S   +   E  +E+  +  L
Sbjct: 175 PNLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 768 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 811
           ++L +   +  G +     +  ++  L  + +  +     ++ N
Sbjct: 228 KTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 35/211 (16%), Positives = 63/211 (29%), Gaps = 6/211 (2%)

Query: 81  LVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGN 140
            + +          + H+DLS +  +   +   L+    L+ L+L   R +  I + L  
Sbjct: 34  FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 93

Query: 141 LSNLQYLD---LSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLK 197
            SNL  L+    SG         +S  S L  L   +           ++  ++   +  
Sbjct: 94  NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

Query: 198 ELKLSFCELHHFPLLSSANFSSLTTLDLSG--NQFQGQIPSRLGNLTSLKHLDL-YSNQF 254
            L      L    L +                   +         L  L+HL L      
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 213

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSL 285
               L  L ++  L+ L +      G +  L
Sbjct: 214 IPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 7e-06
 Identities = 39/267 (14%), Positives = 81/267 (30%), Gaps = 10/267 (3%)

Query: 221 TTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQG 280
            TLDL+G      +  RL +   +       +  +  +    S    ++ + L ++ ++ 
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 281 DISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFS 340
                 L   + +Q L L     L   I  +  K   L   +++      + +    + S
Sbjct: 61  STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 341 G---CVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLES 397
                              +   + +      +LN  G   N     +   + +  NL  
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179

Query: 398 LDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPF-QLTVLELRSCHLGP 456
           LDLS++ +        F  L  L     +    I       +     L  L++       
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG 239

Query: 457 RFPLWLQLQKKLNDLDISSTRISDKIP 483
              L   L++ L  L I+ +  +    
Sbjct: 240 TLQL---LKEALPHLQINCSHFTTIAR 263

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-05
 Identities = 39/232 (16%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 97  HLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFEL 156
            LDL+G +       + L+    +      ++     +         +Q++DLS    E+
Sbjct: 4   TLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60

Query: 157 HAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFC--------ELHH 208
                  LS  S L++L +  + LS     +  +    +L  L LS C        +   
Sbjct: 61  STLH-GILSQCSKLQNLSLEGLRLS--DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117

Query: 209 FPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDL 268
                    +     D +    Q  +      +T L       N   S +   + +  +L
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177

Query: 269 EVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTS 320
             L L D+ +  +        L  +Q L LS   ++  +     G++  L +
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT 229

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 39/275 (14%), Positives = 78/275 (28%), Gaps = 11/275 (4%)

Query: 349 SLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGT 408
           +L L G  +   +T +L   + +       + MD  +         ++ +DLSN+ +  +
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVS 61

Query: 409 VSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKL 468
                    +KL +       L   I         L  L L  C     F     L    
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA-LQTLLSSC 120

Query: 469 NDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSI 528
           + LD  +                 +    ++   + G         +  ++     L  +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180

Query: 529 FDLSNNALSGSIFHLICQGENFSKNIEFLKLS-TNHFSEGIPDCWMNWPRLRTLNLGNNN 587
               +  L    F            ++ L LS                P L+TL +    
Sbjct: 181 DLSDSVMLKNDCFQEFF----QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV 236

Query: 588 FTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKN 622
             G+L +      +L  L +  +  + +   +  N
Sbjct: 237 PDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 742 LVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 801
           L +++D++  N   ++   + + QG+ +     +     + ++    R ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 802 SG-QIPQSMSNLSFLNYLNLSNNNLNGEIPSS 832
               +   +S  S L  L+L    L+  I ++
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 90

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 13/213 (6%)

Query: 215 ANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLE 274
              ++   +    +     +     +L  +  L  +     +  +  +  LN+L  L L+
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 275 DNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISE 334
           DN++        L  +T ++       +        S   L   ++     T L+   + 
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 335 ILGIFSGCVAYELESLYLRGCQIFGHLTNQ-------LGQFKRLNFLGLSNNQMDGSIPL 387
            +          +  L       +  + N        L    +L  L   +N++    PL
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL 191

Query: 388 SLGQMANLESLDLSNNKLNGTVSEIHFVNLTKL 420
               + NL  + L NN+++      +  NL  +
Sbjct: 192 --ASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 40/241 (16%), Positives = 77/241 (31%), Gaps = 33/241 (13%)

Query: 391 QMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQLTVLELR 450
            +AN   +    + +  TV++     +T L                       +T +E  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQADLDGITTL--SAFGTG---------------VTTIE-- 57

Query: 451 SCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQIYGGVPKF 510
                      +Q    L  L++   +I+D  P      I +          +       
Sbjct: 58  ----------GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ 107

Query: 511 DSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPD 570
              ++ L  T    +  +  LSN  +     + I      +       LS  +       
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT 167

Query: 571 CWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD 630
              N  +L TL   +N  +   P  + +L +L  ++L+NN++S V P    N S L  + 
Sbjct: 168 PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 631 V 631
           +
Sbjct: 224 L 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 26/220 (11%), Positives = 70/220 (31%), Gaps = 16/220 (7%)

Query: 581 LNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSI 640
           +  G +N T ++  +   L  + +L+     ++ +     +  + L  L++ +N++    
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA 79

Query: 641 PTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMA 700
           P          +  I                     I  +   S   T    +   S + 
Sbjct: 80  PLK-------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 701 TADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVE 760
                      +   +G   +   +    +   +   + L+ + ++    N  S   P+ 
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 761 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 800
             +L  L  ++L +N  +   P  +    ++  +  + NQ
Sbjct: 193 --SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 32/218 (14%), Positives = 71/218 (32%), Gaps = 20/218 (9%)

Query: 92  LKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSG 151
           L + + +    ++          A L  +  L+      T +    +  L+NL  L+L  
Sbjct: 18  LANAIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 152 VYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPL 211
                 A   +      L           + A    +    L S +   ++         
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 212 LSSANFSSLTTLDL----------SGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGW 261
           +   + + +T +            S    Q    + L NL+ L  L    N+ +   +  
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP 190

Query: 262 LSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLS 299
           L+ L +L  + L++N++        L N +++  + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 33/243 (13%)

Query: 367 QFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLAN 426
                  +    + +  ++  +   +  + +L      +           +  +  +L N
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT---------TIEGV-QYLNN 64

Query: 427 ANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAF 486
              L  K N          + ++    L       +     L  +       +       
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 487 WNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQ 546
              +     L +  NQI    P     ++  +   +  +  +  L+N             
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANL------------ 172

Query: 547 GENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLN 606
                  +  LK   N  S+  P    + P L  ++L NN  +   P  +   ++L  + 
Sbjct: 173 -----SKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

Query: 607 LRN 609
           L N
Sbjct: 224 LTN 226

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 7e-07
 Identities = 28/253 (11%), Positives = 68/253 (26%), Gaps = 23/253 (9%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
           R      +  T  +P  +    +   L     +L  +   +F  F  LE +++ +N+++ 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSA 698
            I   +     +L  + +           +  +        +  N+ +  +P      S 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 699 MATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIP 758
                    + +I                        +  +      + ++ N       
Sbjct: 128 QKVLLDIQDNINI-----------------HTIERNSFVGLSFESVILWLNKNGIQEIHN 170

Query: 759 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 818
                 Q  +     +N       D          LD S  ++       + NL  L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 819 NLSNNNLNGEIPS 831
           +  N     ++P+
Sbjct: 231 STYN---LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 1e-05
 Identities = 29/228 (12%), Positives = 53/228 (23%), Gaps = 13/228 (5%)

Query: 384 SIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSFLANANSLIFKINPNWVPPFQ 443
            IP  L    N   L     KL   + +  F     L     + N ++  I  +      
Sbjct: 22  EIPSDL--PRNAIELRFVLTKLRV-IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 78

Query: 444 LTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWNSIFQYYYLNVSGNQI 503
                         +      Q   N   +  +    K              L    + I
Sbjct: 79  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 504 YGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNH 563
                + +S       +  L L                 +     N ++  E      N+
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGI----------QEIHNCAFNGTQLDELNLSDNNN 188

Query: 564 FSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNR 611
             E   D +        L++            +  L  LR+ +  N +
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 24/229 (10%), Positives = 59/229 (25%), Gaps = 7/229 (3%)

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQF 254
           S +       ++   P   S    +   L     + +            L+ +++  N  
Sbjct: 9   SNRVFLCQESKVTEIP---SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 255 NSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGK 314
              +   +            +        +          + LL  N  +          
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-- 123

Query: 315 LCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFL 374
                   +   + + +I  I       +++E   L+L    I           +     
Sbjct: 124 -IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182

Query: 375 GLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEIHFVNLTKLVSF 423
              NN ++          +    LD+S  +++ ++      NL KL + 
Sbjct: 183 LSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR 230

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 1e-04
 Identities = 11/60 (18%), Positives = 17/60 (28%)

Query: 194 HSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQ 253
              +        L   P       S    LD+S  +        L NL  L+    Y+ +
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 13/91 (14%), Positives = 21/91 (23%)

Query: 541 FHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT 600
                     S     L L+ N   E     +            NNN            +
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201

Query: 601 SLRSLNLRNNRLSGVIPTSFKNFSILEALDV 631
               L++   R+  +     +N   L A   
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 27/212 (12%), Positives = 60/212 (28%), Gaps = 2/212 (0%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGV 152
           ++ + L       + I      +   +L  + +SQ     +I   + +     +      
Sbjct: 29  RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87

Query: 153 YFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLL 212
              L          L  L++L IS   +    D   + +    L +++ +          
Sbjct: 88  ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 147

Query: 213 SSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLS 272
                     L L+ N  Q             +     +N             +   +L 
Sbjct: 148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 207

Query: 273 LEDNRLQGDISSLGLDNLTSIQKLLLSWNDEL 304
           +   R+   + S GL+NL  ++        +L
Sbjct: 208 ISRTRIHS-LPSYGLENLKKLRARSTYNLKKL 238

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 6/119 (5%)

Query: 222 TLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGD 281
            L L+       +   L  L  + HLDL  N+           L  L  L +        
Sbjct: 2   VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNAL 55

Query: 282 ISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFS 340
            +  G+ NL  +Q+LLL  N               +L   ++    L Q+      +  
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)

Query: 579 RTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVG 638
           R L+L + + T      +  L  +  L+L +NRL  + P      + L  L+V +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 639 SIPTWIGERFSRLMILILRSNKFHGDFPIQ-LCRLASLQILDVAYNSL 685
                      RL  L+L +N+      IQ L     L +L++  NSL
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 27/131 (20%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 121 RYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNL 180
           R L+L+    T  +   L  L  + +LDLS          ++ L  L             
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCL-------EVLQAS 51

Query: 181 SKASDSLLVINSLHSLKELKLSFCELHHFPLLSS-ANFSSLTTLDLSGNQF------QGQ 233
             A +++  + +L  L+EL L    L     +    +   L  L+L GN        Q +
Sbjct: 52  DNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 111

Query: 234 IPSRLGNLTSL 244
           +   L +++S+
Sbjct: 112 LAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP--------------------- 782
           R + ++  + +  +   +  L  +  L+LSHN      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 783 DNIGVMRSIESLDFSANQL-SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 837
           D +  +  ++ L    N+L      Q + +   L  LNL  N+L  E     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 530 DLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
           DLS+N L              +       L  +  +    D   N PRL+ L L NN   
Sbjct: 26  DLSHNRLRA-------LPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ 78

Query: 590 G-SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEAL 629
             +    + +   L  LNL+ N L        +   +L ++
Sbjct: 79  QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.4 bits (108), Expect = 9e-06
 Identities = 40/336 (11%), Positives = 85/336 (25%), Gaps = 26/336 (7%)

Query: 321 FSMASTKLS------QDISEILGIFSGCVAYELESLYLRGCQI----FGHLTNQLGQFKR 370
           FS+    L       +D   +  +        ++ + L G  I       L+  +   K 
Sbjct: 3   FSIEGKSLKLDAITTEDEKSVFAVLLED--DSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 371 LNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKL--NGTVSEIHFVNLTKLVSFLANAN 428
           L     S+             +  L    L   KL               + +    + +
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120

Query: 429 SLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIPRAFWN 488
           + +  +  +          ++             +    L  +     R+ +   + +  
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180

Query: 489 SIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGE 548
           +   +  L+       G  P+     +   +     L  +    N          +    
Sbjct: 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-LAIAL 239

Query: 549 NFSKNIEFLKLSTNHFSEGIPDCWMNW------PRLRTLNLGNNNFTGSLPMSIGT---- 598
               N+  L L+    S       ++         L+TL L  N        ++ T    
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299

Query: 599 -LTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
            +  L  L L  NR S       +   +      GE
Sbjct: 300 KMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 32/321 (9%), Positives = 90/321 (28%), Gaps = 35/321 (10%)

Query: 551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTG----SLPMSIGTLTSLRSLN 606
            K+++   ++T      +    +    ++ + L  N         L  +I +   L    
Sbjct: 7   GKSLKLDAITTEDEKS-VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAE 65

Query: 607 LRNNRLSGVIPTSFKNFSILEALDVGENELV--------------GSIPTWIGERFSRLM 652
             +     V     +   +L    +   +L                 +  ++ +      
Sbjct: 66  FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 125

Query: 653 ILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDIL 712
           + +  +             L  L +   A N+       C  N     +     ++    
Sbjct: 126 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 185

Query: 713 YA-----FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGL 767
                     +    E    ++   L     +  L    +   +  S  + + + +   L
Sbjct: 186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 768 QSLNLSHNLFTGRIPDNIGVM------RSIESLDFSANQLSGQIPQSM-----SNLSFLN 816
           + L L+  L + R    +           +++L    N++     +++       +  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 817 YLNLSNNNLNGEIPSSTQLQS 837
           +L L+ N  + E     +++ 
Sbjct: 306 FLELNGNRFSEEDDVVDEIRE 326

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 10/79 (12%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDL 249
            +   SL+EL +S  +L   P    A    L  L  S N    ++P    N   LK L +
Sbjct: 280 CDLPPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLA-EVPELPQN---LKQLHV 331

Query: 250 YSNQFNS--AVLGWLSKLN 266
             N       +   +  L 
Sbjct: 332 EYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 31/106 (29%), Gaps = 9/106 (8%)

Query: 541 FHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLT 600
             +     +    +       N  S  I       P L  LN+ NN     LP       
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP--- 304

Query: 601 SLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGE 646
            L  L    N L+  +P   +N   L+ L V  N L    P     
Sbjct: 305 RLERLIASFNHLAE-VPELPQN---LKQLHVEYNPLR-EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.0 bits (107), Expect = 1e-05
 Identities = 45/328 (13%), Positives = 86/328 (26%), Gaps = 33/328 (10%)

Query: 369 KRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSNNKLNGTVSEI-----HFVNLTKLVSF 423
           ++ + L L+N  +  S+P       +LESL  S N L              V+   L + 
Sbjct: 38  RQAHELELNNLGL-SSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 424 LANANSLIFKINPNWVPPFQLTVLELRSCHLGPRFPLWLQLQKKLNDLDISSTRISDKIP 483
                 L +    N        +       +       L+    L          ++++ 
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 484 RAFWNSIFQYYYLNVSGNQIYGGVPKFDSPSMPLIITPSLLLGSIFDLSNNALSGSIFHL 543
                    +     + N     +P        ++   ++L       +   L+      
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 544 ICQGE--------------NFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFT 589
                              +           +  F +   + +     L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 590 GSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFS 649
             +        SL  LN+ NN+L   +P        LE L    N L       + E   
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-----AEVPELPQ 324

Query: 650 RLMILILRSNKFHGDFPIQLCRLASLQI 677
            L  L +  N     FP     +  L++
Sbjct: 325 NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 10/86 (11%)

Query: 749 SMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 808
            +N  S EI         L+ LN+S+N     +P        +E L  S N L+ ++P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPEL 322

Query: 809 MSNLSFLNYLNLSNNNLNG--EIPSS 832
             NL     L++  N L    +IP S
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 201 LSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLG 260
                  +          SL  L++S N+   ++P+       L+ L    N        
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAE---- 318

Query: 261 WLSKLNDLEVLSLEDNRLQ------GDISSLGLDN 289
                 +L+ L +E N L+        +  L +++
Sbjct: 319 VPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 43/317 (13%), Positives = 77/317 (24%), Gaps = 18/317 (5%)

Query: 93  KHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLS--NLQYLDLS 150
           +    L+L+        +P+      +L  L  S    T  +P    +L    +   +L 
Sbjct: 38  RQAHELELNNLGLS--SLPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 151 GVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFP 210
            +           +S   L +   +   +  K  D               L F    +  
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 211 LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
           L       +L  L                 L+    +   +       L  L  L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 271 LSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQ 330
            +     L     SL   N+           +           +        +       
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLT--DLPELPQSLTFLDVSENIFSGLSELPPNLYYL 269

Query: 331 DISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLG 390
           + S         +   LE L +   +    L        RL  L  S N +   +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNK----LIELPALPPRLERLIASFNHL-AEVPELPQ 324

Query: 391 QMANLESLDLSNNKLNG 407
              NL+ L +  N L  
Sbjct: 325 ---NLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 43/315 (13%), Positives = 80/315 (25%), Gaps = 26/315 (8%)

Query: 552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR-------- 603
           +    L+L+    S  +P+     P L +L    N+ T  LP    +L SL         
Sbjct: 38  RQAHELELNNLGLSS-LPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 604 ------SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILR 657
                  L       + +        S    +   +N  +  +P                
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 658 SNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSG 717
                      L  + +          L  ++   +   + +           +   ++ 
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 718 DNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLF 777
           +N +     L      +                  F        + L  L       N  
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 778 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 837
           +  I     +  S+E L+ S N+L  ++P     L     L  S N+L         L+ 
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPELPQNLKQ 328

Query: 838 FDASSFAGNDLCGAP 852
                   N L   P
Sbjct: 329 LHVE---YNPLREFP 340

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 27/163 (16%), Positives = 50/163 (30%), Gaps = 6/163 (3%)

Query: 90  LELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDL 149
           +       ++L G      ++   L++L   ++L LS      +    L  + NL+ L L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSL 77

Query: 150 SGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELK--LSFCELH 207
                +      +    L  L   Y    +LS     + +     S  ++       +L 
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 208 HFPLLSSANFSS--LTTLDLSGNQFQGQIPSRLGNLTSLKHLD 248
               L     +   L       N         +  L +LK LD
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)

Query: 87  PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQY 146
            +  EL  +  +  + +D + +Q    +  L N+  L L+  + T +    L NL NL +
Sbjct: 40  VTQNELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDI--KPLANLKNLGW 94

Query: 147 LDLSGVYFELHAETISWLSG------------LSLLEHLYISFVNLSKASDSLLVINSLH 194
           L L     +  +                    ++ L HL          +    +     
Sbjct: 95  LFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSR 154

Query: 195 SLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYS 251
             K   LS  +     ++  A  + L  L LS N         L  L +L  L+L+S
Sbjct: 155 LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 30/194 (15%), Positives = 55/194 (28%), Gaps = 13/194 (6%)

Query: 216 NFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLED 275
            F+     +L        +      L S+  +   ++   S  +  +  L ++  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 276 NRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFSMASTKLSQDISEI 335
           N+L        L NL  +        D    K       L    +       L       
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 336 LGIFSGCVAYELESLYLRGCQIFGHLTNQ-------LGQFKRLNFLGLSNNQMDGSIPLS 388
                     ++  L          L +        L    +L  L LS N +   +  +
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DLR-A 195

Query: 389 LGQMANLESLDLSN 402
           L  + NL+ L+L +
Sbjct: 196 LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.8 bits (89), Expect = 0.002
 Identities = 27/189 (14%), Positives = 61/189 (32%), Gaps = 13/189 (6%)

Query: 240 NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLS 299
                   +L       AV    ++LN ++ +   ++ ++   S  G+  L ++ KL L+
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLN 76

Query: 300 WNDELG----GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGC 355
            N          +                S+       + L +    ++     ++L   
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 356 QIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPL----SLGQMANLESLDLSNNKLNGTVSE 411
           +      N++     L+ L   +        +     L  +  L++L LS N ++   + 
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

Query: 412 IHFVNLTKL 420
               NL  L
Sbjct: 197 AGLKNLDVL 205

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 3e-05
 Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 11/172 (6%)

Query: 514 SMPLIITPSLLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWM 573
            +P  I       +   L++N                  ++  L+L  N  +   P+ + 
Sbjct: 22  EIPRDIPLHT---TELLLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE 75

Query: 574 NWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGE 633
               ++ L LG N            L  L++LNL +N++S V+P SF++ + L +L++  
Sbjct: 76  GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135

Query: 634 NELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL 685
           N    +        + R     L         P    ++  +QI D+ ++  
Sbjct: 136 NPFNCNCHLAWFAEWLRK--KSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 25/128 (19%), Positives = 41/128 (32%), Gaps = 6/128 (4%)

Query: 523 LLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLST-NHFSEGIPDCWMNWPRLRTL 581
           L++   +D S  AL            +       + L+  +  +  +     N P L +L
Sbjct: 14  LIMSKRYDGSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSL 70

Query: 582 NLGNNNFTG--SLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGS 639
           NL NN       +   +    +L+ LNL  N L             LE L +  N L  +
Sbjct: 71  NLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130

Query: 640 IPTWIGER 647
                   
Sbjct: 131 FRDQSTYI 138

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 12/147 (8%)

Query: 109 QIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS 168
           Q+   ++   +     L              +L       +      + A        + 
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGL-----RSDPDLVAQNIDVVLNRRSSMAATLRIIEENIP 65

Query: 169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGN 228
            L  L +S   L +  D   ++    +LK L LS  EL     L       L  L L GN
Sbjct: 66  ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 125

Query: 229 QFQGQIPSR-------LGNLTSLKHLD 248
                   +             L  LD
Sbjct: 126 SLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 0.004
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 3/109 (2%)

Query: 190 INSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQ--IPSRLGNLTSLKHL 247
           + + +    L           ++   N   L +L+LS N+      + S +    +LK L
Sbjct: 38  LVAQNIDVVLNRRSSMAATLRIIEE-NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96

Query: 248 DLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL 296
           +L  N+  S       K   LE L L+ N L               ++ 
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 30/190 (15%), Positives = 58/190 (30%), Gaps = 15/190 (7%)

Query: 240 NLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSL-GLDNLTSIQKLLL 298
            L       L        V    + L+ +  L  +       I S+ G++ L ++ ++  
Sbjct: 16  ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG----IKSIDGVEYLNNLTQINF 69

Query: 299 SWNDELG----GKIPTSFGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRG 354
           S N          +      L      +  +   +      L +F+  +        L  
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 355 CQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLS----LGQMANLESLDLSNNKLNGTVS 410
                  +N +     L+ L         S  ++    L  +  LE LD+S+NK++    
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 411 EIHFVNLTKL 420
                NL  L
Sbjct: 190 LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 23/206 (11%)

Query: 70  PDDNEAYQRSMLVGKIN----PSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNL 125
            D   A +   ++GK N     S  +L  +  L        GI+    +  L NL  +N 
Sbjct: 13  TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRL---GIKSIDGVEYLNNLTQINF 69

Query: 126 SQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASD 185
           S  + T +    L NL+ L  + ++           +                  +    
Sbjct: 70  SNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANL--------TNLTGLTLFNNQIT 119

Query: 186 SLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLK 245
            +  + +L +L  L+LS   +      + +  +SL  L+ S NQ     P  L NLT+L+
Sbjct: 120 DIDPLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLE 175

Query: 246 HLDLYSNQFNSAVLGWLSKLNDLEVL 271
            LD+ SN+ +   +  L+KL +LE L
Sbjct: 176 RLDISSNKVSD--ISVLAKLTNLESL 199

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 211 LLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEV 270
                N      LDL G +    I +    L     +D   N+     L     L  L+ 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKT 67

Query: 271 LSLEDNRLQGDI 282
           L + +NR+    
Sbjct: 68  LLVNNNRICRIG 79

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIP 617
           KL+     +     + N  R R L+L        +     TL    +++  +N +  +  
Sbjct: 2   KLTAELIEQ--AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDG 58

Query: 618 TS 619
             
Sbjct: 59  FP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	931
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.73
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.18
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.42
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.1

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.5e-36  Score=318.87  Aligned_cols=293  Identities=32%  Similarity=0.523  Sum_probs=175.8

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCcC--ccceEecCC--CCcEEEEEcCCCCCCCchhhhcccccce--e
Q 002360           11 SCIESEREALLKLKHDLRDPSHRLASWIGDNGDCCK--WGGVLCGNF--TGHVLELNLQNPFSPDDNEAYQRSMLVG--K   84 (931)
Q Consensus        11 ~~~~~~~~~ll~~k~~~~d~~~~l~~w~~~~~~~c~--w~g~~c~~~--~~~v~~L~l~~~~~~~~~~~~~~~~~~~--~   84 (931)
                      -|.++||+||++||+++.||. .+++|. .++|||.  |+||+|+..  .+||++|+|+++            .+.|  .
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~-~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~------------~l~g~~~   67 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWL-PTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGL------------NLPKPYP   67 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCC-TTSCTTTTCSTTEEECCSSSCCCEEEEEEECC------------CCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCC-CCCCCCCCcCCCeEEeCCCCcEEEEEEECCCC------------CCCCCCC
Confidence            599999999999999999874 699998 6889995  999999863  348999999886            5555  5


Q ss_pred             ecccccCccCCcEeeCCC-CCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccc
Q 002360           85 INPSLLELKHLVHLDLSG-NDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISW  163 (931)
Q Consensus        85 l~~~l~~l~~L~~L~Ls~-n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~  163 (931)
                      +|++++++++|++|+|++ |++++. +|..|+++++|++|+|++|++.+..|..+..+.+|+++++++|.+.        
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~--------  138 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS--------  138 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE--------
T ss_pred             CChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhccccccccccc--------
Confidence            677777777777777775 666654 6777777777777777777777666666666666666666654322        


Q ss_pred             cCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCC
Q 002360          164 LSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTS  243 (931)
Q Consensus       164 l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  243 (931)
                                                                  ...+..+.++++|+++++++|.+.+.+|..+..+..
T Consensus       139 --------------------------------------------~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~  174 (313)
T d1ogqa_         139 --------------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK  174 (313)
T ss_dssp             --------------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred             --------------------------------------------ccCchhhccCcccceeeccccccccccccccccccc
Confidence                                                        122223334444444444444444444444444443


Q ss_pred             C-CEEEcCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEccCCCCCcccCCcccCCCCCCcEEE
Q 002360          244 L-KHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLSWNDELGGKIPTSFGKLCKLTSFS  322 (931)
Q Consensus       244 L-~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  322 (931)
                      + +.++++.|++++..+..+..+..+ .+++.++...+.++                          ..+..+++++.++
T Consensus       175 l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~--------------------------~~~~~~~~l~~l~  227 (313)
T d1ogqa_         175 LFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS--------------------------VLFGSDKNTQKIH  227 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG--------------------------GGCCTTSCCSEEE
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccc--------------------------ccccccccccccc
Confidence            3 444444554444444444433222 34444444433333                          3333333333333


Q ss_pred             cCCCcCCCcchhhhhhcccccccCccEEEcCCcccccccccccCCCCCCCEEeccCCcCCcCccccccCCCCCCEEEccC
Q 002360          323 MASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGHLTNQLGQFKRLNFLGLSNNQMDGSIPLSLGQMANLESLDLSN  402 (931)
Q Consensus       323 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  402 (931)
                      +.++.+.+.++. ++..     ++|+.|++++|++++.+|.+++++++|++|+|++|+++|.+| .++.+++|+.+++++
T Consensus       228 ~~~~~l~~~~~~-~~~~-----~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~  300 (313)
T d1ogqa_         228 LAKNSLAFDLGK-VGLS-----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN  300 (313)
T ss_dssp             CCSSEECCBGGG-CCCC-----TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCS
T ss_pred             cccccccccccc-cccc-----cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCC
Confidence            333333333221 2222     455566666666655666666666666666666666665555 345566666666666


Q ss_pred             Cc
Q 002360          403 NK  404 (931)
Q Consensus       403 n~  404 (931)
                      |+
T Consensus       301 N~  302 (313)
T d1ogqa_         301 NK  302 (313)
T ss_dssp             SS
T ss_pred             Cc
Confidence            65

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=4.3e-33  Score=297.68  Aligned_cols=260  Identities=32%  Similarity=0.564  Sum_probs=241.0

Q ss_pred             CCCccEEECcCCcccc--ccCCcccCCCCCCEEecCC-CcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCc
Q 002360          551 SKNIEFLKLSTNHFSE--GIPDCWMNWPRLRTLNLGN-NNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILE  627 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  627 (931)
                      ...++.|+|++|.+++  .+|..+.++++|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+..|+
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            3468999999999987  4789999999999999987 899999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCc-CEEEccCCccccccCccccccccccccCCCC
Q 002360          628 ALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASL-QILDVAYNSLLGTIPRCINNFSAMATADSSD  706 (931)
Q Consensus       628 ~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~  706 (931)
                      .+++++|.+.+.+|..+. .+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.++..        
T Consensus       129 ~l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~--------  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--------  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC--------
T ss_pred             ccccccccccccCchhhc-cCcccceeecccccccccccccccccccccccccccccccccccccccccccc--------
Confidence            999999999999999887 79999999999999999999999888886 89999999999999987765443        


Q ss_pred             CCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCcc
Q 002360          707 QSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  786 (931)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~  786 (931)
                                                           ..++++++.+.+.+|..++.++.++.+++++|.+++.+| .++
T Consensus       200 -------------------------------------~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~  241 (313)
T d1ogqa_         200 -------------------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVG  241 (313)
T ss_dssp             -------------------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCC
T ss_pred             -------------------------------------ccccccccccccccccccccccccccccccccccccccc-ccc
Confidence                                                 469999999999999999999999999999999998776 589


Q ss_pred             CcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCCCCCccCcccccccCCC-CCCCCCCCCCC
Q 002360          787 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFDASSFAGN-DLCGAPLSSCT  857 (931)
Q Consensus       787 ~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n-~l~~~~~~~c~  857 (931)
                      .+++|+.|||++|+++|.+|.+++++++|++|||++|+|+|.||..+.+..++..++.|| .+||.|+..|.
T Consensus       242 ~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999999999999999999999999999999999888999999999999 69999888783

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=9e-25  Score=240.51  Aligned_cols=209  Identities=26%  Similarity=0.390  Sum_probs=157.9

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      +.........|....  ...+..+++++.+++++|.+++..|  +..+++|++|++++|.++..  ..+..+++|+.|++
T Consensus       175 ~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  248 (384)
T d2omza2         175 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  248 (384)
T ss_dssp             TTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             ccccccccccccccc--ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhcc
Confidence            344445555554432  3456677888888888888886544  45577888888888888753  35778888888999


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|++++ ++. +. .+++|++|++++|++++..  .+..++.++.+++++|++.+.  ..+..                
T Consensus       249 ~~n~l~~-~~~-~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~----------------  305 (384)
T d2omza2         249 ANNQISN-LAP-LS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISN----------------  305 (384)
T ss_dssp             CSSCCCC-CGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGG----------------
T ss_pred             ccCccCC-CCc-cc-ccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccch----------------
Confidence            8888874 333 32 6788899999888887543  366788889999988888642  22333                


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                  ++.++.|++++|++++..  .+..+++|++|++++|+++ .+| .++++++|
T Consensus       306 ----------------------------~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L  353 (384)
T d2omza2         306 ----------------------------LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVS-DVS-SLANLTNI  353 (384)
T ss_dssp             ----------------------------CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTC
T ss_pred             ----------------------------hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCC-CCh-hHcCCCCC
Confidence                                        233478999999998653  3888999999999999998 455 58999999


Q ss_pred             CEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          792 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       792 ~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      ++||+++|++++.+|  +.++++|++|+|++|
T Consensus       354 ~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         354 NWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            999999999997765  889999999999988

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.93  E-value=2.6e-24  Score=236.81  Aligned_cols=188  Identities=23%  Similarity=0.396  Sum_probs=144.6

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++++.+++++|.+++..|  +..+++|+.|++++|.++. + ..+..+++|+.|++++|.+++..+  +..+++|++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~  269 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELK  269 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc--ccccccCCEee
Confidence            5677788888888877544  4556788888888888873 2 357778888888888888886543  67788888888


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|++++ ++..  ..++.++.++++.|.+.+.  ..+..+++++.|++++|++++..|  +..+++            
T Consensus       270 l~~~~l~~-~~~~--~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~------------  330 (384)
T d2omza2         270 LGANQISN-ISPL--AGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTK------------  330 (384)
T ss_dssp             CCSSCCCC-CGGG--TTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTT------------
T ss_pred             ccCcccCC-CCcc--ccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCC------------
Confidence            88888874 4432  2578888888888888753  346778889999999999886432  444444            


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  790 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~  790 (931)
                                                      |+.|++++|++++ ++ .++++++|++|++++|++++.+|  ++++++
T Consensus       331 --------------------------------L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~  374 (384)
T d2omza2         331 --------------------------------LQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTR  374 (384)
T ss_dssp             --------------------------------CCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             --------------------------------CCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCC
Confidence                                            4889999999984 44 68899999999999999996554  889999


Q ss_pred             CCEEeccCC
Q 002360          791 IESLDFSAN  799 (931)
Q Consensus       791 L~~LdLs~N  799 (931)
                      |+.|+|++|
T Consensus       375 L~~L~L~~N  383 (384)
T d2omza2         375 ITQLGLNDQ  383 (384)
T ss_dssp             CSEEECCCE
T ss_pred             CCEeeCCCC
Confidence            999999988

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=8e-25  Score=229.18  Aligned_cols=142  Identities=20%  Similarity=0.178  Sum_probs=73.3

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEcc-CCcCccccchhhccCCCCcEEec
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLR-NNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~-~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ++++|+|++|+|+++.+.+|.++++|++|++++|++....+..+..++.++.+... .|.++...+..|.++++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            45566666666655555556666666666666666655555555555555555443 34444444555555555555555


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINN  695 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~  695 (931)
                      ++|.+. .++...+....+|+.+++++|++++..+..+..+++|+.|++++|++.+..+..|.+
T Consensus       113 ~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~  175 (284)
T d1ozna_         113 DRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG  175 (284)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc
Confidence            555554 222222223445555555555555444444444455555555555544433333333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.8e-24  Score=221.15  Aligned_cols=229  Identities=21%  Similarity=0.203  Sum_probs=200.7

Q ss_pred             cEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCC
Q 002360          555 EFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGEN  634 (931)
Q Consensus       555 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N  634 (931)
                      ..++.++++++. +|..+.  +++++|+|++|+|++..+.+|.++++|++|++++|++....+..+.++..++.++...+
T Consensus        14 ~~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345667777765 565443  57899999999999777788999999999999999999999999999999999987654


Q ss_pred             cccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccc
Q 002360          635 ELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYA  714 (931)
Q Consensus       635 ~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~  714 (931)
                      .....++...+.++++|++|++++|.+....+..+...++|+.+++++|++++..+..|..++.|               
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L---------------  155 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL---------------  155 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------------
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccch---------------
Confidence            43336655555589999999999999988788888899999999999999997767777665554               


Q ss_pred             ccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEE
Q 002360          715 FSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL  794 (931)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L  794 (931)
                                                   +.|++++|++++..+..|.++++|+.+++++|++++..|..|+.+++|++|
T Consensus       156 -----------------------------~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         156 -----------------------------THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             -----------------------------CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             -----------------------------hhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence                                         899999999998889999999999999999999999999999999999999


Q ss_pred             eccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          795 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       795 dLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      |+++|++++..|..|..+++|++|++++|++.|.++
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999999999999999999999999999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=9.9e-23  Score=215.80  Aligned_cols=229  Identities=19%  Similarity=0.280  Sum_probs=179.6

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +++|++|++++|.+....|..|.++++|++|++++|+++ .+|..+  ...++.|++.+|.+.+..+..+.....+..++
T Consensus        54 l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~  130 (305)
T d1xkua_          54 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVE  130 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             cccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccc
Confidence            577888888888888877888888899999999999888 455443  35788889999988887777788888888888


Q ss_pred             cCCCcccc--cCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCC
Q 002360          631 VGENELVG--SIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQS  708 (931)
Q Consensus       631 L~~N~l~~--~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~  708 (931)
                      ...|....  ..+..+ ..+++|+.+++++|.+.. +|..+  +++|+.|++++|...+..+..+.+++.+         
T Consensus       131 ~~~n~~~~~~~~~~~~-~~l~~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l---------  197 (305)
T d1xkua_         131 LGTNPLKSSGIENGAF-QGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNL---------  197 (305)
T ss_dssp             CCSSCCCGGGBCTTGG-GGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTC---------
T ss_pred             cccccccccCCCcccc-ccccccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccc---------
Confidence            88876432  223333 468889999999988873 45443  6788999999999888877777665554         


Q ss_pred             ccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCc
Q 002360          709 SDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM  788 (931)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l  788 (931)
                                                         +.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|..+
T Consensus       198 -----------------------------------~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l  241 (305)
T d1xkua_         198 -----------------------------------AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADH  241 (305)
T ss_dssp             -----------------------------------CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred             -----------------------------------cccccccccccccccccccccccceeeeccccccc-ccccccccc
Confidence                                               78899999999888888899999999999999998 778889999


Q ss_pred             CCCCEEeccCCcCcccCccc------ccCCCCCCeeeCCCcccc-ccCCC
Q 002360          789 RSIESLDFSANQLSGQIPQS------MSNLSFLNYLNLSNNNLN-GEIPS  831 (931)
Q Consensus       789 ~~L~~LdLs~N~l~~~~p~~------l~~l~~L~~L~ls~N~l~-g~ip~  831 (931)
                      ++|++|+|++|+|+...+..      +..+.+|+.|++++|+++ +++|.
T Consensus       242 ~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            99999999999998553333      345678899999999885 44543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.6e-22  Score=212.58  Aligned_cols=247  Identities=21%  Similarity=0.286  Sum_probs=207.5

Q ss_pred             ccccEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCC
Q 002360          524 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLR  603 (931)
Q Consensus       524 ~~l~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  603 (931)
                      +..+.+|++++.++.. |..+      .+++++|++++|+|+...+.+|.++++|++|++++|.+....|..|.+++.|+
T Consensus        10 c~~~~~~C~~~~L~~l-P~~l------~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~   82 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKV-PKDL------PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE   82 (305)
T ss_dssp             EETTEEECTTSCCCSC-CCSC------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             ecCCEEEecCCCCCcc-CCCC------CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccC
Confidence            3566778887777643 3332      35799999999999997777899999999999999999988888999999999


Q ss_pred             EEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCcccc--ccCCcccCCCCCcCEEEcc
Q 002360          604 SLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFH--GDFPIQLCRLASLQILDVA  681 (931)
Q Consensus       604 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls  681 (931)
                      +|++++|+++.. |..  ....++.|++.+|.+. .++...+.....++.++...|...  ...+..+..+++|+.++++
T Consensus        83 ~L~l~~n~l~~l-~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          83 RLYLSKNQLKEL-PEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             EEECCSSCCSBC-CSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             EecccCCccCcC-ccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCCCccccccccccCccccc
Confidence            999999999854 433  3467899999999998 566666657888899999888644  3356678889999999999


Q ss_pred             CCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccc
Q 002360          682 YNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV  761 (931)
Q Consensus       682 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l  761 (931)
                      +|.+. .+|..+                                              ++.++.|++++|..++.++..+
T Consensus       159 ~n~l~-~l~~~~----------------------------------------------~~~L~~L~l~~n~~~~~~~~~~  191 (305)
T d1xkua_         159 DTNIT-TIPQGL----------------------------------------------PPSLTELHLDGNKITKVDAASL  191 (305)
T ss_dssp             SSCCC-SCCSSC----------------------------------------------CTTCSEEECTTSCCCEECTGGG
T ss_pred             cCCcc-ccCccc----------------------------------------------CCccCEEECCCCcCCCCChhHh
Confidence            99986 344321                                              2345899999999999999999


Q ss_pred             cCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          762 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       762 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      ..++.+++|++++|.+++..|..+..+++|++|+|++|+|+ .+|.++..+++|++|+|++|+|+. |+
T Consensus       192 ~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~-i~  258 (305)
T d1xkua_         192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IG  258 (305)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC-CC
T ss_pred             hccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc-cC
Confidence            99999999999999999988999999999999999999998 678899999999999999999984 44

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.6e-23  Score=210.57  Aligned_cols=202  Identities=20%  Similarity=0.264  Sum_probs=143.9

Q ss_pred             CCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEE
Q 002360          576 PRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILI  655 (931)
Q Consensus       576 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~  655 (931)
                      ..+.+++.++++++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++ .+|..  ..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            34444555555555 3454442  45666666666666555556666666666666666665 44432  2466777777


Q ss_pred             ccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhh
Q 002360          656 LRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVE  735 (931)
Q Consensus       656 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  735 (931)
                      +++|++++ .+..+..+++|+.|++++|.+.+..+..+..+..                                     
T Consensus        84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------------------------  125 (266)
T d1p9ag_          84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGE-------------------------------------  125 (266)
T ss_dssp             CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-------------------------------------
T ss_pred             cccccccc-cccccccccccccccccccccceeeccccccccc-------------------------------------
Confidence            77777663 4556677778888888888777555554444333                                     


Q ss_pred             hhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCC
Q 002360          736 YNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL  815 (931)
Q Consensus       736 ~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L  815 (931)
                             ++.|++++|.+++..+..+..++.|+.|++++|++++..+..|+.+++|++|||++|+|+ .+|..+..+++|
T Consensus       126 -------l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         126 -------LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             -------CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             -------cccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                   367888888888777777788889999999999999888888889999999999999998 788888888999


Q ss_pred             CeeeCCCccccccC
Q 002360          816 NYLNLSNNNLNGEI  829 (931)
Q Consensus       816 ~~L~ls~N~l~g~i  829 (931)
                      +.|+|++|++.|..
T Consensus       198 ~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         198 PFAFLHGNPWLCNC  211 (266)
T ss_dssp             SEEECCSCCBCCSG
T ss_pred             CEEEecCCCCCCCc
Confidence            99999999988754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=200.99  Aligned_cols=200  Identities=19%  Similarity=0.162  Sum_probs=162.1

Q ss_pred             CCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEec
Q 002360          552 KNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDV  631 (931)
Q Consensus       552 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L  631 (931)
                      ..+.+++.++++++. +|..+.  +++++|+|++|++++..+..|.++++|++|+|++|+++.. | .++.+++|++|++
T Consensus        10 ~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~L   84 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTLDL   84 (266)
T ss_dssp             TTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEEEC
T ss_pred             CCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccccc
Confidence            455667777777776 555443  4688888888888866667788888888888888888743 3 3567888888888


Q ss_pred             CCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccc
Q 002360          632 GENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDI  711 (931)
Q Consensus       632 ~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~  711 (931)
                      ++|+++ .++..+. .+++|++|++++|.+.+..+..+..+.+++.|++++|.+.+..+..+..++.+            
T Consensus        85 s~N~l~-~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l------------  150 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL------------  150 (266)
T ss_dssp             CSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC------------
T ss_pred             cccccc-ccccccc-cccccccccccccccceeeccccccccccccccccccccceeccccccccccc------------
Confidence            888887 4455444 68889999999998887777888889999999999999986666666555544            


Q ss_pred             cccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCC
Q 002360          712 LYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  791 (931)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L  791 (931)
                                                      +.+++++|++++..+..|..+++|++|+|++|+|+ .+|..+..+++|
T Consensus       151 --------------------------------~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         151 --------------------------------EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             --------------------------------CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             --------------------------------hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                                            78999999999888888999999999999999999 899999999999


Q ss_pred             CEEeccCCcCcc
Q 002360          792 ESLDFSANQLSG  803 (931)
Q Consensus       792 ~~LdLs~N~l~~  803 (931)
                      +.|+|++|++.+
T Consensus       198 ~~L~L~~Np~~C  209 (266)
T d1p9ag_         198 PFAFLHGNPWLC  209 (266)
T ss_dssp             SEEECCSCCBCC
T ss_pred             CEEEecCCCCCC
Confidence            999999999875

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=6.5e-20  Score=206.45  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             ccCCCCCEEEcCCCCCCCCCc----cccCCCCCCCEEEccCCcCCCC----Cccccc-CCCCCCEEEcCCCccccc----
Q 002360          191 NSLHSLKELKLSFCELHHFPL----LSSANFSSLTTLDLSGNQFQGQ----IPSRLG-NLTSLKHLDLYSNQFNSA----  257 (931)
Q Consensus       191 ~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~----~~~~l~-~l~~L~~L~L~~n~l~~~----  257 (931)
                      ..++++++|+|++|.++....    ..+..+++|++|||++|.++..    +...+. ...+|++|++++|+++..    
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            344444455555554432211    2233445555555555544311    111111 123455555555555432    


Q ss_pred             ccccccCCCCCCEEeccCCccc
Q 002360          258 VLGWLSKLNDLEVLSLEDNRLQ  279 (931)
Q Consensus       258 ~~~~l~~l~~L~~L~L~~n~l~  279 (931)
                      ++..+..+++|++|++++|.+.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccchhhccccccccccccccch
Confidence            2233445555555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=4.5e-16  Score=167.83  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             CCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcc
Q 002360           94 HLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYF  154 (931)
Q Consensus        94 ~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~  154 (931)
                      ++++|||+++.++  .+|+.   .++|++|+|++|.++ .+|..+   .+|+.|++++|.+
T Consensus        39 ~l~~LdLs~~~L~--~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l   90 (353)
T d1jl5a_          39 QAHELELNNLGLS--SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNL   90 (353)
T ss_dssp             TCSEEECTTSCCS--CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCC
T ss_pred             CCCEEEeCCCCCC--CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhccc
Confidence            5666666666666  24542   345666666666665 445432   3455555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-19  Score=204.34  Aligned_cols=211  Identities=20%  Similarity=0.131  Sum_probs=117.0

Q ss_pred             CCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCccc-----cchhhccCCCCcEEecCCCcccccCc----hh
Q 002360          577 RLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGV-----IPTSFKNFSILEALDVGENELVGSIP----TW  643 (931)
Q Consensus       577 ~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p----~~  643 (931)
                      ....+++..+.+...    ....+...+.++.+++++|.+...     .+........++.+++++|.+.....    ..
T Consensus       199 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~  278 (460)
T d1z7xw1         199 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  278 (460)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccc
Confidence            344555555544311    111233456666677766665421     22233345667777777776643211    12


Q ss_pred             HHhhcCcCcEEEccCccccccCCc----cc-CCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCC
Q 002360          644 IGERFSRLMILILRSNKFHGDFPI----QL-CRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGD  718 (931)
Q Consensus       644 ~~~~l~~L~~L~L~~n~l~~~~p~----~l-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~  718 (931)
                      +. ..+.++.+++++|.++.....    .+ ...+.|+.+++++|.++......+.++                      
T Consensus       279 l~-~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~----------------------  335 (460)
T d1z7xw1         279 LR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV----------------------  335 (460)
T ss_dssp             HH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH----------------------
T ss_pred             cc-ccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccc----------------------
Confidence            22 456677777777766532111    11 234567777887777764322222111                      


Q ss_pred             CccccceeEEeecchhhhhhhccceeEEEcccCccccc----CCcccc-CCCCCCEEEccCCcCccc----CCcCccCcC
Q 002360          719 NKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGE----IPVEVT-NLQGLQSLNLSHNLFTGR----IPDNIGVMR  789 (931)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~----ip~~l~-~l~~L~~L~Ls~N~l~~~----ip~~l~~l~  789 (931)
                                        ....+.|+.|||++|++++.    +++.+. ..+.|++|+|++|.|+..    +++.+...+
T Consensus       336 ------------------~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         336 ------------------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ------------------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             ------------------cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence                              11234467788888887642    333333 356788888888888642    444556668


Q ss_pred             CCCEEeccCCcCcccCcccc----c-CCCCCCeeeCCCcccccc
Q 002360          790 SIESLDFSANQLSGQIPQSM----S-NLSFLNYLNLSNNNLNGE  828 (931)
Q Consensus       790 ~L~~LdLs~N~l~~~~p~~l----~-~l~~L~~L~ls~N~l~g~  828 (931)
                      +|++|||++|+++......+    . +.+.|+.|++++|.+...
T Consensus       398 ~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         398 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            88888888888875433332    2 234688888888877643

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.1e-17  Score=167.68  Aligned_cols=203  Identities=21%  Similarity=0.340  Sum_probs=135.8

Q ss_pred             EECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcc
Q 002360          557 LKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENEL  636 (931)
Q Consensus       557 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  636 (931)
                      ++++.+++++..  .+..+.+|+.|++.+|.++. + ..+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        24 ~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            445555555533  23445667777777777763 3 246677777777777777765433  66777777777777776


Q ss_pred             cccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcccccccc
Q 002360          637 VGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFS  716 (931)
Q Consensus       637 ~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~  716 (931)
                      + .++. +. .+++|+.+++++|...+..  .+...+.++.+.++++.+....+  +.+.                    
T Consensus        98 ~-~i~~-l~-~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~--------------------  150 (227)
T d1h6ua2          98 K-NVSA-IA-GLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGL--------------------  150 (227)
T ss_dssp             S-CCGG-GT-TCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGC--------------------
T ss_pred             c-cccc-cc-ccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccc--------------------
Confidence            6 4543 33 5777777777777665432  34556777777777777653222  2222                    


Q ss_pred             CCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEec
Q 002360          717 GDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF  796 (931)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdL  796 (931)
                                              +.++.|++++|.+++..  .++++++|++|+|++|++++ +|. ++.+++|++|++
T Consensus       151 ------------------------~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         151 ------------------------TNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHL  202 (227)
T ss_dssp             ------------------------TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEEC
T ss_pred             ------------------------cccccccccccccccch--hhcccccceecccCCCccCC-Chh-hcCCCCCCEEEC
Confidence                                    23477888888876432  37888889999999998884 444 788899999999


Q ss_pred             cCCcCcccCcccccCCCCCCeeeCCC
Q 002360          797 SANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       797 s~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      ++|++++..|  ++++++|++|++++
T Consensus       203 s~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         203 KNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             cCCcCCCCcc--cccCCCCCEEEeeC
Confidence            9999885433  78888999998873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.73  E-value=2.2e-15  Score=162.32  Aligned_cols=178  Identities=23%  Similarity=0.234  Sum_probs=98.9

Q ss_pred             cEEEEEcCCCCCCCchhhhcccccceeecccccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcc
Q 002360           58 HVLELNLQNPFSPDDNEAYQRSMLVGKINPSLLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQ  137 (931)
Q Consensus        58 ~v~~L~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~  137 (931)
                      ++++|+|++.            .+ ..+|+.   +++|++|+|++|+++  .+|+.   +.+|+.|++++|.++ .++..
T Consensus        39 ~l~~LdLs~~------------~L-~~lp~~---~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~l   96 (353)
T d1jl5a_          39 QAHELELNNL------------GL-SSLPEL---PPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSDL   96 (353)
T ss_dssp             TCSEEECTTS------------CC-SCCCSC---CTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCSC
T ss_pred             CCCEEEeCCC------------CC-CCCCCC---CCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhhh
Confidence            4667787774            33 345543   467788888888877  35654   346777778777766 33321


Q ss_pred             cCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCC
Q 002360          138 LGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANF  217 (931)
Q Consensus       138 ~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  217 (931)
                         .+.|++|++++|.+..+|.    +..+++|++|+++++.+...+.      ....+..+.+..+.....  ..+..+
T Consensus        97 ---p~~L~~L~L~~n~l~~lp~----~~~l~~L~~L~l~~~~~~~~~~------~~~~l~~l~~~~~~~~~~--~~l~~l  161 (353)
T d1jl5a_          97 ---PPLLEYLGVSNNQLEKLPE----LQNSSFLKIIDVDNNSLKKLPD------LPPSLEFIAAGNNQLEEL--PELQNL  161 (353)
T ss_dssp             ---CTTCCEEECCSSCCSSCCC----CTTCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSSC--CCCTTC
T ss_pred             ---ccccccccccccccccccc----hhhhccceeecccccccccccc------ccccccchhhcccccccc--cccccc
Confidence               1357788888777766653    3566677777777666655433      234555555555443332  234455


Q ss_pred             CCCCEEEccCCcCCCCCcccccCCCCCCEEEcCCCcccccccccccCCCCCCEEeccCCcc
Q 002360          218 SSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLYSNQFNSAVLGWLSKLNDLEVLSLEDNRL  278 (931)
Q Consensus       218 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  278 (931)
                      +.++.+++++|..... +.   .....+.+....+.+.. . ..+..++.|+.+++++|..
T Consensus       162 ~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~~~~~~~-~-~~~~~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         162 PFLTAIYADNNSLKKL-PD---LPLSLESIVAGNNILEE-L-PELQNLPFLTTIYADNNLL  216 (353)
T ss_dssp             TTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSS-C-CCCTTCTTCCEEECCSSCC
T ss_pred             ccceeccccccccccc-cc---ccccccccccccccccc-c-ccccccccccccccccccc
Confidence            6666666666655421 11   11223444444433322 1 1234555566666655544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.5e-17  Score=168.87  Aligned_cols=202  Identities=15%  Similarity=0.114  Sum_probs=107.0

Q ss_pred             CccEEECcCCccccccCCcccCCCCCCEEecCCCcceecC-CCcccCCCCCCEEEccC-CcCccccchhhccCCCCcEEe
Q 002360          553 NIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSL-PMSIGTLTSLRSLNLRN-NRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       553 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      ++++|++++|+++.+.+.+|.++++|++|++++|.+...+ +.+|.+++.++++.+.. |.+....+..|.++++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            4566666666666544455666666666666666554332 33455566666665543 445555555555555555555


Q ss_pred             cCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCcc
Q 002360          631 VGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSD  710 (931)
Q Consensus       631 L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~  710 (931)
                      +++|.+.. .+..                       ..+..++.+..+..+++.+....+..+..++             
T Consensus       110 l~~~~l~~-~~~~-----------------------~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~-------------  152 (242)
T d1xwdc1         110 ISNTGIKH-LPDV-----------------------HKIHSLQKVLLDIQDNINIHTIERNSFVGLS-------------  152 (242)
T ss_dssp             EESCCCCS-CCCC-----------------------TTTCBSSCEEEEEESCTTCCEECTTSSTTSB-------------
T ss_pred             cchhhhcc-cccc-----------------------ccccccccccccccccccccccccccccccc-------------
Confidence            55555542 2211                       1122233444444444444433333332221             


Q ss_pred             ccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEE-EccCCcCcccCCcCccCcC
Q 002360          711 ILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSL-NLSHNLFTGRIPDNIGVMR  789 (931)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L-~Ls~N~l~~~ip~~l~~l~  789 (931)
                                                    ..++.|++++|+++. ++.......+++++ ++++|+++...+..|.+++
T Consensus       153 ------------------------------~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~  201 (242)
T d1xwdc1         153 ------------------------------FESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS  201 (242)
T ss_dssp             ------------------------------SSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSC
T ss_pred             ------------------------------ccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCC
Confidence                                          112556666666663 33333334444433 4566667633344567777


Q ss_pred             CCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          790 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       790 ~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      +|++||+++|+++...+..|.+++.|+++++.+
T Consensus       202 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            777777777777755455677777777666543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=8.4e-18  Score=163.38  Aligned_cols=100  Identities=16%  Similarity=0.242  Sum_probs=52.1

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCc
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  823 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N  823 (931)
                      +.|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+.+..+.. .-...++.+.+..|
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCC
Confidence            45555555555555555566666666666666666555555666666666666666665432211 11123445555566


Q ss_pred             cccccCCCCCccCcccccccCCC
Q 002360          824 NLNGEIPSSTQLQSFDASSFAGN  846 (931)
Q Consensus       824 ~l~g~ip~~~~~~~~~~~~~~~n  846 (931)
                      .+++..|.  .+......++..|
T Consensus       160 ~~~c~~p~--~l~~~~l~~L~~n  180 (192)
T d1w8aa_         160 AARCGAPS--KVRDVQIKDLPHS  180 (192)
T ss_dssp             GCBBCSST--TTTTSBGGGSCTT
T ss_pred             CeEeCCCh--hhcCCEeeecCHh
Confidence            66655553  2333333344444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.7e-16  Score=158.98  Aligned_cols=189  Identities=23%  Similarity=0.339  Sum_probs=99.7

Q ss_pred             ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360           89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS  168 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~  168 (931)
                      ++++++|+.|++.+|.++.  ++ .+.++++|++|++++|.+++..  .+.++++|+++++++|.++.++    .+.+++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~i~----~l~~l~  107 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVS----AIAGLQ  107 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSCCG----GGTTCT
T ss_pred             HHHcCCcCEEECCCCCCCc--ch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccccccccc----cccccc
Confidence            3455666666666666663  32 3566666666666666665332  2566666666666666554333    245556


Q ss_pred             CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEE
Q 002360          169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLD  248 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  248 (931)
                      +|+.++++.+.......    +...+.++.+.++.+.+....  .+.++++|++|++++|.+...  ..++.+++|++|+
T Consensus       108 ~L~~l~l~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~  179 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTP----LAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLK  179 (227)
T ss_dssp             TCCEEECTTSCCCCCGG----GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred             cccccccccccccccch----hccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhhcccccceecc
Confidence            66666665555544322    334555555555555544432  234455555555555555422  1245555555555


Q ss_pred             cCCCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEcc
Q 002360          249 LYSNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLS  299 (931)
Q Consensus       249 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  299 (931)
                      +++|++++..  .++.+++|++|++++|+++ .++.  +.++++|++|+++
T Consensus       180 Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt-~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         180 ADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             CCSSCCCCCG--GGGGCTTCCEEECTTSCCC-BCGG--GTTCTTCCEEEEE
T ss_pred             cCCCccCCCh--hhcCCCCCCEEECcCCcCC-CCcc--cccCCCCCEEEee
Confidence            5555554421  2455555555555555554 2322  4455555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.6e-17  Score=164.02  Aligned_cols=212  Identities=16%  Similarity=0.137  Sum_probs=138.8

Q ss_pred             EEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccC-
Q 002360          580 TLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRS-  658 (931)
Q Consensus       580 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~-  658 (931)
                      .++.++..++ .+|..+.  +++++|++++|+++...+..|.++++|++|++++|.+.+.++...+.+++.++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4444444444 4444332  35666666666666554555666666666666666665555554444567777776653 


Q ss_pred             ccccccCCcccCCCCCcCEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhh
Q 002360          659 NKFHGDFPIQLCRLASLQILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNS  738 (931)
Q Consensus       659 n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  738 (931)
                      |++....+..+..+++|+.+++++|++....+  +..+..                                        
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~--~~~~~~----------------------------------------  126 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--VHKIHS----------------------------------------  126 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCSCCC--CTTTCB----------------------------------------
T ss_pred             ccccccccccccccccccccccchhhhccccc--cccccc----------------------------------------
Confidence            56666667778889999999999998864322  212222                                        


Q ss_pred             hccceeEEEcccCcccccCCccccCCC-CCCEEEccCCcCcccCCcCccCcCCCCEE-eccCCcCcccCcccccCCCCCC
Q 002360          739 ILNLVRSIDISMNNFSGEIPVEVTNLQ-GLQSLNLSHNLFTGRIPDNIGVMRSIESL-DFSANQLSGQIPQSMSNLSFLN  816 (931)
Q Consensus       739 ~~~~L~~LdLs~N~l~~~ip~~l~~l~-~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L-dLs~N~l~~~~p~~l~~l~~L~  816 (931)
                       ++.+..+..+++.+....+..+.+++ .++.|++++|+++. ++......+++..+ ++++|+++...+..|.++++|+
T Consensus       127 -l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~  204 (242)
T d1xwdc1         127 -LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV  204 (242)
T ss_dssp             -SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCS
T ss_pred             -ccccccccccccccccccccccccccccceeeecccccccc-cccccccchhhhccccccccccccccHHHhcCCCCCC
Confidence             22346667777888766666777665 78899999999995 44444455565555 6788899865566789999999


Q ss_pred             eeeCCCccccccCCCCCccCcccc
Q 002360          817 YLNLSNNNLNGEIPSSTQLQSFDA  840 (931)
Q Consensus       817 ~L~ls~N~l~g~ip~~~~~~~~~~  840 (931)
                      +||+++|+++ .+|.. .|..+..
T Consensus       205 ~L~Ls~N~l~-~l~~~-~~~~l~~  226 (242)
T d1xwdc1         205 ILDISRTRIH-SLPSY-GLENLKK  226 (242)
T ss_dssp             EEECTTSCCC-CCCSS-SCTTCCE
T ss_pred             EEECCCCcCC-ccCHH-HHcCCcc
Confidence            9999999998 56653 2444433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=4e-17  Score=158.51  Aligned_cols=178  Identities=17%  Similarity=0.181  Sum_probs=122.5

Q ss_pred             CCEEEccCCcCccccchhhccCCCCcEEecCCCcccccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEcc
Q 002360          602 LRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELVGSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVA  681 (931)
Q Consensus       602 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls  681 (931)
                      .++++.++++++ .+|..+  .+++++|+|++|++++.++...+.++++|+.|++++|++.+..+..+..+++|+.|+|+
T Consensus        10 ~~~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356777777777 345443  25677888888888755666555567788888888888877777777778888888888


Q ss_pred             CCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccccCCccc
Q 002360          682 YNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSGEIPVEV  761 (931)
Q Consensus       682 ~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l  761 (931)
                      +|++++..|..|.++++|                                            +.|+|++|+|++..|..|
T Consensus        87 ~N~l~~l~~~~F~~l~~L--------------------------------------------~~L~L~~N~l~~i~~~~f  122 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQL--------------------------------------------KTLNLYDNQISCVMPGSF  122 (192)
T ss_dssp             SCCCCEECSSSSTTCTTC--------------------------------------------CEEECCSSCCCEECTTSS
T ss_pred             cccccccCHHHHhCCCcc--------------------------------------------cccccCCccccccCHHHh
Confidence            888876666667666555                                            677888888877777777


Q ss_pred             cCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCCccccccCC
Q 002360          762 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  830 (931)
Q Consensus       762 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~N~l~g~ip  830 (931)
                      ..+++|++|+|++|.+....+ ...-...++.+.+..|.+++..|..+.   .++.++|+.|.+.+.-+
T Consensus       123 ~~l~~L~~l~L~~N~~~~~~~-~~~~~~~l~~~~l~~~~~~c~~p~~l~---~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAPSKVR---DVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             TTCTTCCEEECTTCCBCCSGG-GHHHHHHHHHHCCSGGGCBBCSSTTTT---TSBGGGSCTTTCCCCCC
T ss_pred             cCCcccccccccccccccccc-hHHHhhhhhhhcccCCCeEeCCChhhc---CCEeeecCHhhCcCCCC
Confidence            778888888888887764322 111123456666777777776665543   45567777777776544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.6e-16  Score=156.49  Aligned_cols=72  Identities=22%  Similarity=0.361  Sum_probs=43.5

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCC
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  821 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls  821 (931)
                      +.+++++|.+++  +..+..+++|+++++++|++++ ++. ++++++|+.|+|++|+++. +| .+.++++|++|+|+
T Consensus       137 ~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             cccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            445555555542  2234556666777777777663 332 6667777777777777663 44 46677777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=6.3e-16  Score=150.84  Aligned_cols=117  Identities=21%  Similarity=0.349  Sum_probs=59.0

Q ss_pred             ECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEecCCCccc
Q 002360          558 KLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALDVGENELV  637 (931)
Q Consensus       558 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~  637 (931)
                      .++.+.+++.++  ...++++++|++++|.++. + ..++.+++|++|++++|++++..|  +.++++|++|++++|.+.
T Consensus        24 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~   97 (199)
T d2omxa2          24 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA   97 (199)
T ss_dssp             HTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             HhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCcccccccccccccc
Confidence            444555554332  2234566666666666652 2 235556666666666666654332  555666666666666554


Q ss_pred             ccCchhHHhhcCcCcEEEccCccccccCCcccCCCCCcCEEEccCCcc
Q 002360          638 GSIPTWIGERFSRLMILILRSNKFHGDFPIQLCRLASLQILDVAYNSL  685 (931)
Q Consensus       638 ~~~p~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l  685 (931)
                       .++. +. ++++|+.|++++|.+...  ..+..+++|+.|++++|++
T Consensus        98 -~~~~-l~-~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          98 -DITP-LA-NLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             -CCGG-GT-TCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             -cccc-cc-cccccccccccccccccc--cccchhhhhHHhhhhhhhh
Confidence             3332 22 455555555555544422  1233444454544444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.3e-15  Score=149.93  Aligned_cols=165  Identities=27%  Similarity=0.342  Sum_probs=82.4

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL  170 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  170 (931)
                      ++..|+.|++++|.++..  + .+..+++|++|+|++|.+++ ++ .++.+++|++|++++|.++.++.    +.++++|
T Consensus        44 ~L~~L~~L~l~~~~i~~l--~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l~~----l~~l~~L  114 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDLSS----LKDLKKL  114 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCGGG----GTTCTTC
T ss_pred             HhcCccEEECcCCCCCCc--h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccccc----ccccccc
Confidence            345555666666655532  2 25555566666666665553 22 24555556666665555543331    3444444


Q ss_pred             CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcC
Q 002360          171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY  250 (931)
Q Consensus       171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  250 (931)
                      +.|+++++.+..+                          +  .+..+++++.+++++|.+++.  ..+..+++|++++++
T Consensus       115 ~~L~l~~~~~~~~--------------------------~--~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~  164 (210)
T d1h6ta2         115 KSLSLEHNGISDI--------------------------N--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (210)
T ss_dssp             CEEECTTSCCCCC--------------------------G--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             ccccccccccccc--------------------------c--ccccccccccccccccccccc--ccccccccccccccc
Confidence            5555444444333                          2  244445555555555554421  224445555555555


Q ss_pred             CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEEEcc
Q 002360          251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKLLLS  299 (931)
Q Consensus       251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~  299 (931)
                      +|++++..  .++++++|+.|++++|.++ .++.  +..+++|++|+|+
T Consensus       165 ~n~l~~i~--~l~~l~~L~~L~Ls~N~i~-~l~~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         165 DNQISDIV--PLAGLTKLQNLYLSKNHIS-DLRA--LAGLKNLDVLELF  208 (210)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCC-BCGG--GTTCTTCSEEEEE
T ss_pred             cccccccc--cccCCCCCCEEECCCCCCC-CChh--hcCCCCCCEEEcc
Confidence            55554432  2455555555555555554 3332  5555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=1.8e-15  Score=147.51  Aligned_cols=162  Identities=29%  Similarity=0.390  Sum_probs=84.4

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLL  170 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L  170 (931)
                      +++++++|+++++.++..   +.+..+++|++|++++|.+++. +. ++++++|++|++++|.+..++.           
T Consensus        38 ~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~~~~~-----------  101 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-----------  101 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-----------
T ss_pred             HhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCc-cc-ccCCcccccccccccccccccc-----------
Confidence            445555555555555532   2345555555555555555532 21 5555555555555554443332           


Q ss_pred             CeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCCcccccCCCCCCEEEcC
Q 002360          171 EHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQIPSRLGNLTSLKHLDLY  250 (931)
Q Consensus       171 ~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  250 (931)
                                         +..+++|+.|++++|......  .+..+++|+.|++++|++.. + +.+..+++|+.|++.
T Consensus       102 -------------------l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~  158 (199)
T d2omxa2         102 -------------------LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFS  158 (199)
T ss_dssp             -------------------GTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECC
T ss_pred             -------------------ccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcc-c-ccccccccccccccc
Confidence                               334555555555555544432  24455566666666665542 2 235556666666666


Q ss_pred             CCcccccccccccCCCCCCEEeccCCccccccCccccCCCCCccEE
Q 002360          251 SNQFNSAVLGWLSKLNDLEVLSLEDNRLQGDISSLGLDNLTSIQKL  296 (931)
Q Consensus       251 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L  296 (931)
                      +|++++..  .++++++|++|++++|+++ +++.  +..+++|++|
T Consensus       159 ~n~l~~l~--~l~~l~~L~~L~ls~N~i~-~i~~--l~~L~~L~~L  199 (199)
T d2omxa2         159 SNQVTDLK--PLANLTTLERLDISSNKVS-DISV--LAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEE
T ss_pred             cccccCCc--cccCCCCCCEEECCCCCCC-CCcc--ccCCCCCCcC
Confidence            66655432  2556666666666666654 3332  4555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.1e-15  Score=154.73  Aligned_cols=224  Identities=17%  Similarity=0.145  Sum_probs=140.0

Q ss_pred             cEEEcccCCCccccchhhhccCCCCCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceec-CCCcccCCCCCCEE
Q 002360          527 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGS-LPMSIGTLTSLRSL  605 (931)
Q Consensus       527 ~~l~ls~n~l~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L  605 (931)
                      +.+|++.+.+.+.....+..     ..+..+.++...+...... .....+|++|++++|.+... ++..+..+++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-----ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            35666666665443333322     2355666666655543332 33456889999998887643 34446778899999


Q ss_pred             EccCCcCccccchhhccCCCCcEEecCCC-cccccCchhHHhhcCcCcEEEccCcc-cccc-CCcccC-CCCCcCEEEcc
Q 002360          606 NLRNNRLSGVIPTSFKNFSILEALDVGEN-ELVGSIPTWIGERFSRLMILILRSNK-FHGD-FPIQLC-RLASLQILDVA  681 (931)
Q Consensus       606 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~-~l~~L~~L~Ls  681 (931)
                      ++++|.++...+..+..+++|++|++++| .+++..-..+...+++|++|++++|. ++.. +...+. ..+.|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            99999888777788888899999999886 45432223344568888888888864 3321 122222 24678888887


Q ss_pred             CCc--cccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccC-cccccCC
Q 002360          682 YNS--LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMN-NFSGEIP  758 (931)
Q Consensus       682 ~N~--l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N-~l~~~ip  758 (931)
                      ++.  ++...   +                                        ......++.|+.||+++| .+++...
T Consensus       157 ~~~~~i~~~~---l----------------------------------------~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         157 GYRKNLQKSD---L----------------------------------------STLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             SCGGGSCHHH---H----------------------------------------HHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             cccccccccc---c----------------------------------------cccccccccccccccccccCCCchhh
Confidence            653  22100   0                                        011122445577777765 4666666


Q ss_pred             ccccCCCCCCEEEccCC-cCcccCCcCccCcCCCCEEeccCC
Q 002360          759 VEVTNLQGLQSLNLSHN-LFTGRIPDNIGVMRSIESLDFSAN  799 (931)
Q Consensus       759 ~~l~~l~~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~LdLs~N  799 (931)
                      ..+..+++|++|+|++| .+++.....++++++|+.|+++++
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            67777777777777774 566555566677777777777776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.3e-15  Score=153.60  Aligned_cols=184  Identities=24%  Similarity=0.249  Sum_probs=105.6

Q ss_pred             CccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCc-ccccccCc-cccCCCC
Q 002360           91 ELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVY-FELHAETI-SWLSGLS  168 (931)
Q Consensus        91 ~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~-~~~~~~~~-~~l~~l~  168 (931)
                      ....|++||++++.++...+...+.++++|++|+|++|.+.+..+..++++++|++|++++|. ++.  ..+ ..+..++
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd--~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE--FALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH--HHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc--cccchhhHHHH
Confidence            445778888887777644455667778888888888887776667777778888888887753 221  111 1134566


Q ss_pred             CCCeEEccCcccCCCCchHHHh-ccCCCCCEEEcCCCC--CCCCCc-cccCCCCCCCEEEccCCc-CCCCCcccccCCCC
Q 002360          169 LLEHLYISFVNLSKASDSLLVI-NSLHSLKELKLSFCE--LHHFPL-LSSANFSSLTTLDLSGNQ-FQGQIPSRLGNLTS  243 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l-~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~  243 (931)
                      +|++|+++++...........+ ..+++|+.|+++++.  ++.... ....++++|++|++++|. +++.....+.++++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            7777777665322211111222 234566777666542  222211 112345666666666643 44444455566666


Q ss_pred             CCEEEcCCC-cccccccccccCCCCCCEEeccCC
Q 002360          244 LKHLDLYSN-QFNSAVLGWLSKLNDLEVLSLEDN  276 (931)
Q Consensus       244 L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  276 (931)
                      |++|++++| .+++.....++++++|+.|++.++
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666666664 354444445556666666666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=2e-15  Score=161.74  Aligned_cols=240  Identities=15%  Similarity=0.187  Sum_probs=156.4

Q ss_pred             CCCCccEEECcCCccccc----cCCcccCCCCCCEEecCCCcceec----------CCCcccCCCCCCEEEccCCcCccc
Q 002360          550 FSKNIEFLKLSTNHFSEG----IPDCWMNWPRLRTLNLGNNNFTGS----------LPMSIGTLTSLRSLNLRNNRLSGV  615 (931)
Q Consensus       550 ~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~----------~p~~~~~l~~L~~L~L~~n~l~~~  615 (931)
                      ....++.|+|++|.+...    +...+...++|+.++++++.....          +...+..+++|++|++++|.+...
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            356777888888777542    334456667788888877654311          112345677888888888887654


Q ss_pred             ----cchhhccCCCCcEEecCCCcccccCchhH------------HhhcCcCcEEEccCcccccc----CCcccCCCCCc
Q 002360          616 ----IPTSFKNFSILEALDVGENELVGSIPTWI------------GERFSRLMILILRSNKFHGD----FPIQLCRLASL  675 (931)
Q Consensus       616 ----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~------------~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L  675 (931)
                          +...+..+++|+.|++++|.+...-...+            ....+.|+.+++++|.+...    +...+...+.|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L  188 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL  188 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred             cccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhh
Confidence                33445567888888888887653211111            12456788888888887633    23345567889


Q ss_pred             CEEEccCCccccccCccccccccccccCCCCCCccccccccCCCccccceeEEeecchhhhhhhccceeEEEcccCcccc
Q 002360          676 QILDVAYNSLLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLVMKGFLVEYNSILNLVRSIDISMNNFSG  755 (931)
Q Consensus       676 ~~L~Ls~N~l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LdLs~N~l~~  755 (931)
                      +.|+|++|++...-...+                                       ........+.|+.|+|++|.++.
T Consensus       189 ~~L~L~~n~i~~~g~~~~---------------------------------------l~~~l~~~~~L~~L~Ls~N~i~~  229 (344)
T d2ca6a1         189 HTVKMVQNGIRPEGIEHL---------------------------------------LLEGLAYCQELKVLDLQDNTFTH  229 (344)
T ss_dssp             CEEECCSSCCCHHHHHHH---------------------------------------HHTTGGGCTTCCEEECCSSCCHH
T ss_pred             cccccccccccccccccc---------------------------------------hhhhhcchhhhcccccccccccc
Confidence            999999988763210000                                       00111224456889999999864


Q ss_pred             c----CCccccCCCCCCEEEccCCcCcccCCcC----ccC--cCCCCEEeccCCcCccc----Cccccc-CCCCCCeeeC
Q 002360          756 E----IPVEVTNLQGLQSLNLSHNLFTGRIPDN----IGV--MRSIESLDFSANQLSGQ----IPQSMS-NLSFLNYLNL  820 (931)
Q Consensus       756 ~----ip~~l~~l~~L~~L~Ls~N~l~~~ip~~----l~~--l~~L~~LdLs~N~l~~~----~p~~l~-~l~~L~~L~l  820 (931)
                      .    +...+..+++|++|+|++|.+++.-...    +..  .+.|++||+++|+++..    +...+. +++.|++|++
T Consensus       230 ~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEEC
Confidence            3    4556778899999999999987542222    222  36799999999998754    333443 5688999999


Q ss_pred             CCcccccc
Q 002360          821 SNNNLNGE  828 (931)
Q Consensus       821 s~N~l~g~  828 (931)
                      ++|++...
T Consensus       310 ~~N~~~~~  317 (344)
T d2ca6a1         310 NGNRFSEE  317 (344)
T ss_dssp             TTSBSCTT
T ss_pred             CCCcCCCc
Confidence            99998643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.5e-13  Score=121.35  Aligned_cols=82  Identities=24%  Similarity=0.363  Sum_probs=59.4

Q ss_pred             eEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccC-cccccCCCCCCeeeCCC
Q 002360          744 RSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       744 ~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~-p~~l~~l~~L~~L~ls~  822 (931)
                      +.||+++|+++ .+|+.++.+++|++|++++|+++ .+|. ++.+++|++|++++|+++... +..+..+++|+++++++
T Consensus        23 ~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          23 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred             CEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc-cccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCC
Confidence            67777777776 56667777788888888888877 4443 777788888888888877443 24577777888888888


Q ss_pred             cccccc
Q 002360          823 NNLNGE  828 (931)
Q Consensus       823 N~l~g~  828 (931)
                      |++++.
T Consensus       100 N~i~~~  105 (124)
T d1dcea3         100 NSLCQE  105 (124)
T ss_dssp             SGGGGS
T ss_pred             CcCCcC
Confidence            877643

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=3.6e-14  Score=151.72  Aligned_cols=91  Identities=18%  Similarity=0.260  Sum_probs=45.9

Q ss_pred             ccCCCCCCEEEccCCcCccc----cchhhccCCCCcEEecCCCcccccCchhHHh-----hcCcCcEEEccCcccccc--
Q 002360          596 IGTLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDVGENELVGSIPTWIGE-----RFSRLMILILRSNKFHGD--  664 (931)
Q Consensus       596 ~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----~l~~L~~L~L~~n~l~~~--  664 (931)
                      +..+++|+.|++++|.++..    +...+..+++|++|++++|.+.+.-...++.     ..+.|++|++++|+++..  
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~  290 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAV  290 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHH
T ss_pred             hcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHH
Confidence            34445555555555554322    2233445555556666666554332222221     123466666666665432  


Q ss_pred             --CCcccC-CCCCcCEEEccCCccc
Q 002360          665 --FPIQLC-RLASLQILDVAYNSLL  686 (931)
Q Consensus       665 --~p~~l~-~l~~L~~L~Ls~N~l~  686 (931)
                        +...+. +++.|+.|+|++|++.
T Consensus       291 ~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         291 RTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHHHHHccCCCCCEEECCCCcCC
Confidence              122221 4567777888888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=2.7e-13  Score=119.68  Aligned_cols=103  Identities=24%  Similarity=0.237  Sum_probs=68.6

Q ss_pred             cEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEEc
Q 002360           96 VHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLYI  175 (931)
Q Consensus        96 ~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~l  175 (931)
                      |+|+|++|+++.  ++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.++.++.    +.++++|++|++
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~~----~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDG----VANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGG----GTTCSSCCEEEC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccCc----cccccccCeEEC
Confidence            578888888884  34 4788888888888888887 567778888888888888888776543    455666666666


Q ss_pred             cCcccCCCCchHHHhccCCCCCEEEcCCCCCC
Q 002360          176 SFVNLSKASDSLLVINSLHSLKELKLSFCELH  207 (931)
Q Consensus       176 ~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~  207 (931)
                      ++|+++..+.. ..+..+++|++|++++|.+.
T Consensus        73 ~~N~i~~~~~~-~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          73 CNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CSSCCCSSSTT-GGGGGCTTCCEEECTTSGGG
T ss_pred             CCCccCCCCCc-hhhcCCCCCCEEECCCCcCC
Confidence            66655554432 12344444444444444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-13  Score=129.02  Aligned_cols=129  Identities=19%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             ccCccCCcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCC
Q 002360           89 LLELKHLVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLS  168 (931)
Q Consensus        89 l~~l~~L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~  168 (931)
                      +.+...+|+|||++|+|+.  ++..+..+++|++|+|++|.++. ++ .|..+++|++|++++|.+..++..+  +..++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~--~~~l~   87 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGL--DQALP   87 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCH--HHHCT
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccc--ccccc
Confidence            4566778888888888874  45666778888888888888773 33 4777888888888888777665543  33445


Q ss_pred             CCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCCCCC---cccccCCCCCC
Q 002360          169 LLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQGQI---PSRLGNLTSLK  245 (931)
Q Consensus       169 ~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~  245 (931)
                      +|++|++++|+++.+++.                         ..+..+++|++|++++|.++...   +..++.+++|+
T Consensus        88 ~L~~L~L~~N~i~~~~~l-------------------------~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          88 DLTELILTNNSLVELGDL-------------------------DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             TCCEEECCSCCCCCGGGG-------------------------GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             ccccceeccccccccccc-------------------------cccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            555555555544443321                         33445555555555555554221   12345566666


Q ss_pred             EEE
Q 002360          246 HLD  248 (931)
Q Consensus       246 ~L~  248 (931)
                      .||
T Consensus       143 ~LD  145 (162)
T d1a9na_         143 VLD  145 (162)
T ss_dssp             EET
T ss_pred             eeC
Confidence            655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.6e-13  Score=126.27  Aligned_cols=125  Identities=15%  Similarity=0.145  Sum_probs=84.4

Q ss_pred             CCCccEEECcCCccccccCCcccCCCCCCEEecCCCcceecCCCcccCCCCCCEEEccCCcCccccchhhccCCCCcEEe
Q 002360          551 SKNIEFLKLSTNHFSEGIPDCWMNWPRLRTLNLGNNNFTGSLPMSIGTLTSLRSLNLRNNRLSGVIPTSFKNFSILEALD  630 (931)
Q Consensus       551 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~  630 (931)
                      +..+++|+|++|+|+.+ +..+..+++|+.|++++|+++.. + .|..+++|++|++++|+++...+..+..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-D-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-C-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-C-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            45677888888888764 55556677788888888887743 3 467777888888888887766666666777788888


Q ss_pred             cCCCcccccCch-hHHhhcCcCcEEEccCccccccC---CcccCCCCCcCEEE
Q 002360          631 VGENELVGSIPT-WIGERFSRLMILILRSNKFHGDF---PIQLCRLASLQILD  679 (931)
Q Consensus       631 L~~N~l~~~~p~-~~~~~l~~L~~L~L~~n~l~~~~---p~~l~~l~~L~~L~  679 (931)
                      +++|++. .++. .....+++|++|++++|+++...   +..+..+|+|++||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            8888776 3443 12235677777777777775322   12355567777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=3.1e-13  Score=130.55  Aligned_cols=75  Identities=23%  Similarity=0.337  Sum_probs=43.2

Q ss_pred             eeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCC-cCccCcCCCCEEeccCCcCcccCccc----------ccC
Q 002360          743 VRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQS----------MSN  811 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~LdLs~N~l~~~~p~~----------l~~  811 (931)
                      |+.|++++|+++. + +.+..+++|+.|++++|+++.... ..++.+++|+.|++++|++....+..          +..
T Consensus        95 L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~  172 (198)
T d1m9la_          95 LEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             CCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHH
Confidence            3566666666653 2 235566666666666666653211 34566666777777776665443322          455


Q ss_pred             CCCCCeee
Q 002360          812 LSFLNYLN  819 (931)
Q Consensus       812 l~~L~~L~  819 (931)
                      +++|+.||
T Consensus       173 lp~L~~LD  180 (198)
T d1m9la_         173 LPNLKKLD  180 (198)
T ss_dssp             CSSCCEES
T ss_pred             CCCcCEeC
Confidence            66777766

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.1e-11  Score=110.32  Aligned_cols=84  Identities=19%  Similarity=0.173  Sum_probs=63.8

Q ss_pred             eEEEcccC-cccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcccCcccccCCCCCCeeeCCC
Q 002360          744 RSIDISMN-NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  822 (931)
Q Consensus       744 ~~LdLs~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~~~p~~l~~l~~L~~L~ls~  822 (931)
                      +.|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|||++|+|+...+..+.. ..|+.|+|++
T Consensus        34 ~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~  112 (156)
T d2ifga3          34 TELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSG  112 (156)
T ss_dssp             SEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CCCCEEECCS
T ss_pred             CeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-ccccccccCC
Confidence            66777655 366555667888888888888888888777788888888888888888888544444544 4688888888


Q ss_pred             cccccc
Q 002360          823 NNLNGE  828 (931)
Q Consensus       823 N~l~g~  828 (931)
                      |++.+.
T Consensus       113 Np~~C~  118 (156)
T d2ifga3         113 NPLHCS  118 (156)
T ss_dssp             SCCCCC
T ss_pred             CcccCC
Confidence            888654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-11  Score=109.87  Aligned_cols=108  Identities=19%  Similarity=0.088  Sum_probs=77.8

Q ss_pred             cCcEEEccCccccccCCcccCCCCCcCEEEccCCc-cccccCccccccccccccCCCCCCccccccccCCCccccceeEE
Q 002360          650 RLMILILRSNKFHGDFPIQLCRLASLQILDVAYNS-LLGTIPRCINNFSAMATADSSDQSSDILYAFSGDNKIVEDTSLV  728 (931)
Q Consensus       650 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  728 (931)
                      ..+.++.+++.+. ..|..+..+++|+.|++++|+ ++...+..|.++++|                             
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L-----------------------------   58 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGEL-----------------------------   58 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-----------------------------
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhcccccc-----------------------------
Confidence            3445666666655 345566677778888886654 665445556665554                             


Q ss_pred             eecchhhhhhhccceeEEEcccCcccccCCccccCCCCCCEEEccCCcCcccCCcCccCcCCCCEEeccCCcCcc
Q 002360          729 MKGFLVEYNSILNLVRSIDISMNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG  803 (931)
Q Consensus       729 ~~~~~~~~~~~~~~L~~LdLs~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~LdLs~N~l~~  803 (931)
                                     +.|+|++|+|+...|..|..+++|++|+|++|+|+ .+|.......+|+.|+|++|++..
T Consensus        59 ---------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          59 ---------------RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             ---------------SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             ---------------CcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCcccC
Confidence                           77888888888777888999999999999999999 454444444579999999999863

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.18  E-value=8.4e-13  Score=127.42  Aligned_cols=53  Identities=21%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             eeEEEcccCcccccCC-ccccCCCCCCEEEccCCcCcccCCcC----------ccCcCCCCEEe
Q 002360          743 VRSIDISMNNFSGEIP-VEVTNLQGLQSLNLSHNLFTGRIPDN----------IGVMRSIESLD  795 (931)
Q Consensus       743 L~~LdLs~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~ip~~----------l~~l~~L~~Ld  795 (931)
                      |+.|++++|+++.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            3666777776653211 34677778888888888776544432          45678888877

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=6.9e-08  Score=88.89  Aligned_cols=85  Identities=20%  Similarity=0.065  Sum_probs=41.3

Q ss_pred             CcEeeCCCCCCCCCCchhhhhcCCCCceeecccccccccCCcccCCCCCCCEEEccCCcccccccCccccCCCCCCCeEE
Q 002360           95 LVHLDLSGNDFQGIQIPKYLASLVNLRYLNLSQARFTGMIPHQLGNLSNLQYLDLSGVYFELHAETISWLSGLSLLEHLY  174 (931)
Q Consensus        95 L~~L~Ls~n~~~~~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~L~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~  174 (931)
                      .+.||+++....     ..+..+..+..++..++... .++..+.++++|++|+|++|.++.++.....+..+++|+.|+
T Consensus        24 ~~~Ldls~l~~~-----~~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          24 QQALDLKGLRSD-----PDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SCCBCCCCCSSC-----TTTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hCeeecccCCCC-----chhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            445566544321     12334444455555444332 334444556666666666666655544333344445555555


Q ss_pred             ccCcccCCCCc
Q 002360          175 ISFVNLSKASD  185 (931)
Q Consensus       175 l~~n~~~~~~~  185 (931)
                      +++|.++++++
T Consensus        98 Ls~N~i~~l~~  108 (162)
T d1koha1          98 LSGNELKSERE  108 (162)
T ss_dssp             CTTSCCCCGGG
T ss_pred             cccCccccchh
Confidence            55555554433

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6.6e-08  Score=89.04  Aligned_cols=66  Identities=27%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             CCCCCCeEEccCcccCCCCchHHHhccCCCCCEEEcCCCCCCCCCccccCCCCCCCEEEccCCcCC
Q 002360          166 GLSLLEHLYISFVNLSKASDSLLVINSLHSLKELKLSFCELHHFPLLSSANFSSLTTLDLSGNQFQ  231 (931)
Q Consensus       166 ~l~~L~~L~l~~n~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  231 (931)
                      ++++|++|++++|+++.++.....+..+++|+.|++++|.+..+....+....+|++|++++|.+.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            455555555555555555444444445555555555555555544322223334444444444443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.53  E-value=1.8e-05  Score=72.52  Aligned_cols=21  Identities=29%  Similarity=0.283  Sum_probs=10.0

Q ss_pred             hccCCCCCCccEEECcCCccc
Q 002360          545 CQGENFSKNIEFLKLSTNHFS  565 (931)
Q Consensus       545 ~~~~~~~~~L~~L~Ls~n~l~  565 (931)
                      +..+...+.|+.|++++|.+.
T Consensus        37 ~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          37 IEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HHHHTTCSCCCEEECTTSCCB
T ss_pred             HHHHhhCCccceeeccccccc
Confidence            333333445555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.42  E-value=4.1e-05  Score=70.13  Aligned_cols=63  Identities=22%  Similarity=0.270  Sum_probs=28.8

Q ss_pred             CCCccEEECcCC-ccccc----cCCcccCCCCCCEEecCCCcceecC----CCcccCCCCCCEEEccCCcCc
Q 002360          551 SKNIEFLKLSTN-HFSEG----IPDCWMNWPRLRTLNLGNNNFTGSL----PMSIGTLTSLRSLNLRNNRLS  613 (931)
Q Consensus       551 ~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----p~~~~~l~~L~~L~L~~n~l~  613 (931)
                      .+.|++|+|+++ .++..    +...+...+.|++|+|++|.+....    ...+...++|++|++++|.++
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            456666666653 34321    1223444455555555555554211    112223344555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.68  E-value=0.00021  Score=65.12  Aligned_cols=86  Identities=15%  Similarity=0.217  Sum_probs=36.4

Q ss_pred             CCCCCCEEecCCCcceec----CCCcccCCCCCCEEEccCCcCccc----cchhhccCCCCcEEec--CCCccccc----
Q 002360          574 NWPRLRTLNLGNNNFTGS----LPMSIGTLTSLRSLNLRNNRLSGV----IPTSFKNFSILEALDV--GENELVGS----  639 (931)
Q Consensus       574 ~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~N~l~~~----  639 (931)
                      ..+.|++|++++|.+...    +-..+...++++.+++++|.+...    +...+...++|+.++|  ++|++...    
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            344455555555544321    111233344555555555554422    1233444455554333  33444321    


Q ss_pred             CchhHHhhcCcCcEEEccCcc
Q 002360          640 IPTWIGERFSRLMILILRSNK  660 (931)
Q Consensus       640 ~p~~~~~~l~~L~~L~L~~n~  660 (931)
                      +...+. ..++|+.|++..+.
T Consensus       124 La~~L~-~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLE-KNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHH-HCSSCCEEECCCSS
T ss_pred             HHHHHH-hCCCcCEEeCcCCC
Confidence            122222 35556666655443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.10  E-value=0.0019  Score=58.54  Aligned_cols=92  Identities=17%  Similarity=0.172  Sum_probs=47.9

Q ss_pred             cCCCCCCcEEEcCCCcCCCcchhhhhhcccccccCccEEEcCCcccccc----cccccCCCCCCCEEecc--CCcCCcC-
Q 002360          312 FGKLCKLTSFSMASTKLSQDISEILGIFSGCVAYELESLYLRGCQIFGH----LTNQLGQFKRLNFLGLS--NNQMDGS-  384 (931)
Q Consensus       312 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~--~n~l~~~-  384 (931)
                      +...+.|++|++++|.++......+...... .+.++.+++++|.+...    +...+...++|+.++|+  .|.+... 
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~  120 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV  120 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence            3445555556666555544333222211111 15667777776665433    22345566777765554  4445432 


Q ss_pred             ---ccccccCCCCCCEEEccCCc
Q 002360          385 ---IPLSLGQMANLESLDLSNNK  404 (931)
Q Consensus       385 ---~p~~~~~l~~L~~L~L~~n~  404 (931)
                         +...+...++|++|+++.+.
T Consensus       121 ~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         121 EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCCCcCEEeCcCCC
Confidence               22344566778888776654