Citrus Sinensis ID: 002369

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930
MASKEISIDSCFGQSADLSPDQDAVRNDGSEPKVVEEIDNIHDLKDNETEKGLRNGNSCRVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLGKSKGGKSKPVSTAKGPQSLAKKSNDRSKAGKTGIYDWDDSREDEGGGDLFCRRKDEFFGTAYRAQRSLTEPRQLKKRKFDLDGNGEQQDVHDGITMRSDSRVTFNNIKKNEKKAEEAQLIVEKNLLSELDERLNADSSRGQPDAAVGKTDVSQILNVGPDTQLAAEAMEALLSGEGIANHDANCLQSNSKRSAEGSSRGKSKSRVSLKQSSSQKRVRLSGVGVATRQKRKSKSGTEISRCSPDNSVKNFKNISEKCDRELATLNKRRAKSMDEQNSTINGSKNMDRVSSGIIGQRNEDGSLESCQPKEFNRCLRTETQNADHSIKKQKIAKAPSASTPIAFRTRSSKAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKDVEASEVMHLKKKHSKLSSNQFGELKSTKPSQPEKLDLELTAMNNGVDGLRYPRGRRSRRNLSVQVSGCSAGMNVKVKSKDFKGSKTPNHSDGKIVVDSQPSAENAEMNSRLDKSPREQCEALESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHHcccccccccEEEccccHHHHHHHHHHHHHcccEEEcccccccEEEEccccccHHHHHHHHccccEEcHHHHHHHHHHccccccccccccccHHHHHccccHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHHcccEEEEcccccccccccccccEEEEcccccHHccHHHHHccccEEcHHHHHHHHHHcccccccEEEEEEEcccccc
ccccEEEEcccccccccccccccccccccccccccEHEEcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccEEccccccccccccEEEcccccccccccccccccccccHHcccccccccccccccccccEccccccHccccccHHccccccHHHHHHHcccHHHHHHHcccccccccccccccccccHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEccccccccccccccEEEEEccccccccEEEEcccccccccccccccccccccEEEEEcccccccccccEEEccccccEccccccccccccccHcccccHHccccccccccccccccccccccccccccccEEEEccccccEEEEccccccccHHccccccccEccccHccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccEcccHHHHcEEEccHHHHHHHHHHHHHccccEccHHHHHHHHHcccccccccEEEccHHHHHHccccHHHHHHHHHccccccccEEEEcccccccHHHHHHHHHHHcccEcccccHHHHccccccccEEEEEcHHHHHHHHHHHHcccccccHHHHHHHHHHEcccHHHcEEEEEEEccccc
maskeisidscfgqsadlspdqdavrndgsepkvveEIDNihdlkdnetekglrngnscrvgsSTVRKLftedsvsqdkglpnngdnaaggenllqfpvnddelaglsyvdsqepgefseanALTFVEQFIEknnfvdfdhevdlgkskggkskpvstakgpqslakksndrskagktgiydwddsredegggdlfcrrkdeffGTAYRaqrslteprqlkkrkfdldgngeqqdvhdgitmrsdsrvtfnNIKKNEKKAEEAQLIVEKNLLSELDERlnadssrgqpdaavgktdvsqilnvgpDTQLAAEAMEALLSGegianhdanclqsnskrsaegssrgksksrvslkqsssqkrvrlsgvgvatrqkrksksgteisrcspdnsvknfKNISEKCDRELATLNKRRAksmdeqnstingsknmdrvssgiigqrnedgslescqpkefnrclrtetqnadhsikkqkiakapsastpiafrTRSSKAVIQLKTTGQILDYCIHDANhlmevgafeenvtcnkdvEASEVMHLKKKhsklssnqfgelkstkpsqpeklDLELTAMnngvdglryprgrrsrrnlsvqvsgcsagmnvkvkskdfkgsktpnhsdgkivvdsqpsaenaemnsrldkspreqcealespctspancitpvnaaspvcmgngyikqsCRKNLAKSCLVKEINRLiatepeplsplkdlrkrrDMASIQVLFSHHLDEDIIKQQKKILDRlgasevssitdathfVTDIFVRTRNMLEAIasgkpvvtHLWLESIAQVKIHIDEesyllrdtkkekefgfsmpaSLARArkhpllkdqrvlitpnikpskETISSLIKSVHGQAVERLgrsalkddklpddlliLSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
maskeisidscfgqsadlspdqdavrndgsepkvveeidnihdlkdnetekglrngnscrvgsSTVRKLFtedsvsqdkglpNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLgkskggkskpvstakgpqslakksndrskagktgiydwddsredegggdLFCRRKDEFFGTAyraqrslteprqlkkrkfdldgngeqqdvhdgitmrsdsrvtfnnIKKNEKKAEEAQLIVEKNLLSELDERLNadssrgqpdaavgktdvsqILNVGPDTQLAAEAMEALLSGEGIANHDANCLQSnskrsaegssrgksksrvslkqsssqkrvrlsgvgvatrqkrksksgteisrcspdnsvknfkniseKCDRELATLnkrraksmdeqnstingsknmdrvSSGIIGQRNEDGSLESCQPKEFNRCLRTetqnadhsikkqkiakapsastpiafrtrsskAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKDVEASEVMHLKKKhsklssnqfgelkstkpsqpekLDLELTAmnngvdglryprgrrsrrnlsvqvsgcsagmnvkvkskdfkgsktpnhsdgkivvdsqpsaENAEMNSRLDKSPREQCEALESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEInrliatepeplsplkdlrkRRDMASIQVLfshhldedIIKQQKKILDRLGasevssitdathfvTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARarkhpllkdqrvlitpnikpsketISSLIKSVHGQAVERlgrsalkddklpDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
MASKEISIDSCFGQSADLSPDQDAVRNDGSEPKVVEEIDNIHDLKDNETEKGLRNGNSCRVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLgkskggkskPVSTAKGPQSLAKKSNDRSKAGKTGIYDWDDSREDEGGGDLFCRRKDEFFGTAYRAQRSLTEPRQLKKRKFDLDGNGEQQDVHDGITMRSDSRVTFnnikknekkaeeaQLIVEKNLLSELDERLNADSSRGQPDAAVGKTDVSQILNVGPDTQLAAEAMEALLSGEGIANHDANCLQSNskrsaegssrgksksrvslkqsssqkrvrLSGVGVATRQKRKSKSGTEISRCSPDNSVKNFKNISEKCDRELATLNKRRAKSMDEQNSTINGSKNMDRVSSGIIGQRNEDGSLESCQPKEFNRCLRTETQNADHSIKKQKIAKAPSASTPIAFRTRSSKAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKDVEASEVMhlkkkhsklssNQFGELKSTKPSQPEKLDLELTAMNNGVDGLryprgrrsrrNLSVQVSGCSAGMNVKVKSKDFKGSKTPNHSDGKIVVDSQPSAENAEMNSRLDKSPREQCEALESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSAlkddklpddllILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
*******************************************************************************************************LAGLSY**********EANALTFVEQFIEKNNFVDFDHEV**************************************************DLFCRRKDEFFGTAYR*******************************************************************************************************************************************************************************************************************************************************************************************KAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKD*********************************************************************************************************************************ANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIAT****************MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRD***************************RVLIT************LIK*VH**AV*******L*DDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDL**
*****************************************************************************************************************************FVEQFIEK************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************IQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMP*****ARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGR******KLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLK*
********DSCFGQSADLSPDQDAVRNDGSEPKVVEEIDNIHDLKDNETEKGLRNGNSCRVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLG*****************************GKTGIYDWDDSREDEGGGDLFCRRKDEFFGTAYRAQRSLTEPRQLKKRKFDLDGNGEQQDVHDGITMRSDSRVTFNNIKKNEKKAEEAQLIVEKNLLSELDERLN*************KTDVSQILNVGPDTQLAAEAMEALLSGEGIANHDANCLQS******************************************************PDNSVKNFKNISEKCDRELATLNKRRAKSMDEQNSTINGSKNMDRVSSGIIGQRNEDGSLESCQPKEFNRCLRT**********************PIAFRTRSSKAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKDVEASEVMHLKKKHSKL**************QPEKLDLELTAMNNGVDGLRYPRGRRSRRNLSVQVSGCSAGMNVKVKSKD**********DGKIVVDSQP*************************CTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
*****ISIDSCFGQ*****************PKVVEEIDNIHDLK************SCRVGSSTVRKLFTEDSVSQDKGL**********ENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFD*********************P*********RSKAGKTGIYDWDDSREDEGGGDLFCRRK***************************************************************QLI*EKNLLSELDERLNA*S**********KTDVSQILNVGPDTQLAAEAMEALLSGEGI**************************************VRLSGVGVATRQK**SKSGTEI******************CDRELATLNK*RAKSM**QNSTIN***NMDR*S***********************************************STPIAFRTRSSKAVIQLKTTGQILDYCI*****LMEVGAF******************************************************************RRNLSVQV****************************************************************************************************************************ASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
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MASKEISIDSCFGQSADLSPDQDAVRNDGSEPKVVEEIDNIHDLKDNETEKGLRNGNSCRVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGLSYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLGKSKGGKSKPVSTAKGPQSLAKKSNDRSKAGKTGIYDWDDSREDEGGGDLFCRRKDEFFGTAYRAQRSLTEPRQLKKRKFDLDGNGEQQDVHDGITMRSDSRVTFNNIKKNEKKAEEAQLIVEKNLLSELDERLNADSSRGQPDAAVGKTDVSQILNVGPDTQLAAEAMEALLSGEGIANHDANCLQSNSKRSAEGSSRGKSKSRVSLKQSSSQKRVRLSGVGVATRQKRKSKSGTEISRCSPDNSVKNFKNISEKCDRELATLNKRRAKSMDEQNSTINGSKNMDRVSSGIIGQRNEDGSLESCQPKEFNRCLRTETQNADHSIKKQKIAKAPSASTPIAFRTRSSKAVIQLKTTGQILDYCIHDANHLMEVGAFEENVTCNKDVEASEVMHLKKKHSKLSSNQFGELKSTKPSQPEKLDLELTAMNNGVDGLRYPRGRRSRRNLSVQVSGCSAGMNVKVKSKDFKGSKTPNHSDGKIVVDSQPSAENAEMNSRLDKSPREQCEALESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFIVLFTDLKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query930 2.2.26 [Sep-21-2011]
A0JNA8984 PAX-interacting protein 1 yes no 0.197 0.186 0.345 6e-25
Q6ZW491069 PAX-interacting protein 1 yes no 0.197 0.172 0.335 6e-24
Q6NZQ41056 PAX-interacting protein 1 yes no 0.197 0.174 0.335 7e-24
Q90WJ31256 PAX-interacting protein 1 N/A no 0.209 0.155 0.31 1e-20
Q767L82042 Mediator of DNA damage ch no no 0.216 0.098 0.274 2e-20
Q5U2M81279 Mediator of DNA damage ch no no 0.211 0.154 0.289 2e-19
Q146762089 Mediator of DNA damage ch no no 0.217 0.096 0.274 4e-19
Q5TM682173 Mediator of DNA damage ch no no 0.217 0.092 0.274 5e-19
Q7YR402171 Mediator of DNA damage ch no no 0.217 0.093 0.274 5e-19
Q5PSV91707 Mediator of DNA damage ch no no 0.215 0.117 0.299 5e-18
>sp|A0JNA8|PAXI1_BOVIN PAX-interacting protein 1 OS=Bos taurus GN=PAXIP1 PE=2 SV=1 Back     alignment and function desciption
 Score =  117 bits (292), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 102/188 (54%), Gaps = 4/188 (2%)

Query: 735 IKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794
           ++Q  K L  LG     S    TH +     RT   L AI+  K +VT  WLE   + + 
Sbjct: 794 VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFKCQK 853

Query: 795 HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSV 854
            +DE++YLLRD + E  F FS+  SL RA   PL K +   ITP I PS  T+ ++++  
Sbjct: 854 FVDEQNYLLRDAEAEVLFSFSLEESLRRAHASPLFKAKYFYITPGICPSLSTMKAIVECA 913

Query: 855 HGQAVERLG--RSAL--KDDKLPDDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910
            G+ + R    R  +  K +K   +++++SCE D  +C  +  +G  V+++E +L G++T
Sbjct: 914 GGKVLSRQPSFRKLMEHKQNKSLSEIVLISCENDLHLCREYFARGIDVHNAEFVLTGVLT 973

Query: 911 QKLEYERY 918
           Q L+YE Y
Sbjct: 974 QTLDYESY 981
Involved in DNA damage response and in transcriptional regulation through histone methyltransferase (HMT) complexes. Plays a role in early development. In DNA damage response is required for cell survival after ionizing radiation. In vitro shown to be involved in the homologous recombination mechanism for the repair of double-strand breaks (DSBs). Its localization to DNA damage foci requires RNF8 and UBE2N. Recruits TP53BP1 to DNA damage foci and, at least in particular repair processes, effective DNA damage response appears to require the association with TP53BP1 phosphorylated by ATM. Together with TP53BP1 regulates ATM association. Recruits PA1 to sites of DNA damage and the PA1:PAXIP1 complex is required for cell survival in response to DNA damage; the function is probbaly independent of MLL-containing histone methyltransferase (HMT) complexes. Promotes ubiquitination of PCNA following UV irradiation and may regulate recruitment of polymerase eta and RAD51 to chromatin after DNA damage. Proposed to be involved in transcriptional regulation by linking MLL-containing histone methyltransferase (HMT) complexes to gene promoters by interacting with promoter-bound transcription factors such as PAX2. Associates with gene promoters that are known to be regulated by MLL2. During immunoglobulin class switching in activated B-cells is involved in trimethylation of histone H3 at 'Lys-4' and in transcription initiation of downstream switch regions at the immunoglobulin heavy-chain (Igh) locus; this function appears to involve the recruitment of MLL-containing HMT complexes.
Bos taurus (taxid: 9913)
>sp|Q6ZW49|PAXI1_HUMAN PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2 Back     alignment and function description
>sp|Q6NZQ4|PAXI1_MOUSE PAX-interacting protein 1 OS=Mus musculus GN=Paxip1 PE=1 SV=1 Back     alignment and function description
>sp|Q90WJ3|PAXI1_XENLA PAX-interacting protein 1 OS=Xenopus laevis GN=paxip1 PE=1 SV=1 Back     alignment and function description
>sp|Q767L8|MDC1_PIG Mediator of DNA damage checkpoint protein 1 OS=Sus scrofa GN=MDC1 PE=3 SV=1 Back     alignment and function description
>sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1 OS=Rattus norvegicus GN=Mdc1 PE=2 SV=2 Back     alignment and function description
>sp|Q14676|MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 OS=Homo sapiens GN=MDC1 PE=1 SV=3 Back     alignment and function description
>sp|Q5TM68|MDC1_MACMU Mediator of DNA damage checkpoint protein 1 OS=Macaca mulatta GN=MDC1 PE=3 SV=1 Back     alignment and function description
>sp|Q7YR40|MDC1_PANTR Mediator of DNA damage checkpoint protein 1 OS=Pan troglodytes GN=MDC1 PE=3 SV=1 Back     alignment and function description
>sp|Q5PSV9|MDC1_MOUSE Mediator of DNA damage checkpoint protein 1 OS=Mus musculus GN=Mdc1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query930
297736928 1055 unnamed protein product [Vitis vinifera] 0.851 0.750 0.448 0.0
224107157 1102 predicted protein [Populus trichocarpa] 0.9 0.759 0.430 0.0
356557839 1147 PREDICTED: uncharacterized protein LOC10 0.901 0.730 0.411 1e-159
449507676 1163 PREDICTED: uncharacterized protein LOC10 0.869 0.695 0.394 1e-141
449470481917 PREDICTED: uncharacterized LOC101214290 0.863 0.875 0.392 1e-139
449454606 1153 PREDICTED: uncharacterized protein LOC10 0.860 0.693 0.391 1e-139
359477306 1294 PREDICTED: uncharacterized protein LOC10 0.343 0.246 0.641 1e-116
357447487 1155 Mediator of DNA damage checkpoint protei 0.301 0.242 0.680 1e-113
255551613 1178 pax transcription activation domain inte 0.344 0.271 0.610 1e-107
145338795 1041 BRCT domain-containing DNA repair protei 0.282 0.252 0.613 3e-90
>gi|297736928|emb|CBI26129.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/883 (44%), Positives = 529/883 (59%), Gaps = 91/883 (10%)

Query: 48   ETEKGLRNGNSCRVGSSTVRKLFTEDSVSQDKGLPNNGDNAAGGENLLQFPVNDDELAGL 107
            E  +GLRN   CRV  STVRKLFTED+ ++     NN  +   G +L Q     ++ AGL
Sbjct: 230  EYNEGLRNETKCRVSRSTVRKLFTEDTFAEKSRSTNNIHSNDEGTDLSQLLACGNKSAGL 289

Query: 108  SYVDSQEPGEFSEANALTFVEQFIEKNNFVDFDHEVDLGKSKGGKSKPVSTAKGPQSLAK 167
            SYVDSQEP E S+ANAL FV++F++ N  ++FD EVD GK+   KS  VS+AKGPQSLAK
Sbjct: 290  SYVDSQEPEEASQANALDFVDRFLQVN-MLEFDQEVDHGKTTKTKSITVSSAKGPQSLAK 348

Query: 168  KSNDRSKAGKTGIYDWDDSREDEGGGDLFCRRKDEFFGTAYRAQRSLTEPRQLKKRKFDL 227
             SN R+  G++ I+DWDD+REDEGGG+ FC RK+E F   +  + S +EPR  K R+ DL
Sbjct: 349  ASNRRNTVGQSEIFDWDDNREDEGGGEFFCHRKEELFDHKHHGRISSSEPR--KTRQADL 406

Query: 228  DGNGEQQDVHDGITMRSDSRVTFNNIKKNEKKAEEAQLIVEKNLLSELDERLNADSSRGQ 287
             G+                       + +E + +E +L +   +++     LNA+SS G+
Sbjct: 407  KGS-----------------------QVDEFRNKEEKLKIHHKIMN----FLNAESSGGE 439

Query: 288  PDAAVGKTDVSQILNVGPDTQLAAEAMEALLSGEGIANHDAN-CLQSNSKRSAEGSSRGK 346
             +A     DV  + NVG DTQ+AAEAMEAL  G  + N D +   Q N   +++G  + +
Sbjct: 440  FEATGADMDVPDMPNVGFDTQMAAEAMEALFYGSSLNNGDVHEACQGN--HNSKGLPKRE 497

Query: 347  SKSRVSLKQSSSQKRVRLSGVGVATRQKRKSKS-GTEISRCSPDNSVKNFKNISEKCDRE 405
             K+    K+ S QKR      GV TRQ +K K  G  +S+ S  +     KN+ E+ D E
Sbjct: 498  RKNSACTKEDSFQKRAHPLDSGVITRQSKKMKGIGARLSKES--SGCARSKNVREQIDVE 555

Query: 406  LATLNKRRAKSMDEQNSTINGSKNMDRVSSGIIGQRNEDGSLESCQPKEFNRCLRTETQN 465
                  +R KS  ++     GS+N+ +  S +  +R  +G+LE     E   C    T +
Sbjct: 556  PVKAKPKRTKSNSQERFASRGSENVGKNPSKVTRKRKAEGTLERSHIDEVEGCHGLATSH 615

Query: 466  ADHSIKKQKIAKAPSASTPIAFRTRSSKAVIQLKTTGQILDYCIHDANHLMEVGAFEENV 525
            +  S+KK+ + +     TP+A RTR    V Q +      +    + N+  + G  ++  
Sbjct: 616  SLISVKKRGLQEELGTFTPVACRTRHRMVVNQFERAKIASNDSGEEINNRRKAGPLKDRR 675

Query: 526  TCNKDVEASEVMHLKKKHSKLSSNQFGELKSTKPSQPEKLDLELTAMNNG--VDGLRYPR 583
              +K V+  +V   K++ S   SN  G+L+S K S  E+ D +LTA++NG  +D L  P+
Sbjct: 676  KRSKAVDVCKVSGDKERLSTSGSNGSGKLQSDKLSHHEQSDSKLTAISNGGKMDALSCPK 735

Query: 584  GRRSRRNLSVQVSGCSAGMNVKVKSKDFKGSKTPNHSDGKIVVDSQPSAENAEMNSRLDK 643
              R+ RNL                                            E N+ L  
Sbjct: 736  QSRTHRNL--------------------------------------------EGNAGL-- 749

Query: 644  SPREQCEALESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATE 703
              RE C+   S CT+P N +TP NAASPVCMGN Y+KQSC+KNL ++ L+KEIN L  T 
Sbjct: 750  --REMCKPSGSVCTTPVNSVTPTNAASPVCMGNEYVKQSCKKNL-RTSLLKEINNLTDTG 806

Query: 704  PEPLSPLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDI 763
            P P S +KD R+RR++++++VLFS HLD+DIIKQQKKIL RLG S  SSI+DATHF+TD 
Sbjct: 807  PGPTSAVKDSRRRREISNVRVLFSQHLDDDIIKQQKKILTRLGVSVASSISDATHFITDA 866

Query: 764  FVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARA 823
            FVRTRNMLEAIA GKPVVTHLWLES  Q +  IDE+ Y+LRD KKEKE GFSMP SLARA
Sbjct: 867  FVRTRNMLEAIAYGKPVVTHLWLESCVQARCFIDEKGYILRDAKKEKELGFSMPVSLARA 926

Query: 824  RKHPLL----KDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKDDKLPDDLLIL 879
             +HPLL    +   +LITPN KP KE I+SL+K+V GQ VER+GRS LKD K PDDLLIL
Sbjct: 927  CQHPLLQAISQSYFILITPNTKPGKEIIASLVKAVDGQPVERIGRSVLKDGKFPDDLLIL 986

Query: 880  SCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYMFI 922
            SC+EDY +CEP+LEKGAAVYSSELLLNG+VTQKLEYER+ +F+
Sbjct: 987  SCDEDYAVCEPYLEKGAAVYSSELLLNGIVTQKLEYERHQLFV 1029

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224107157|ref|XP_002314392.1| predicted protein [Populus trichocarpa] gi|222863432|gb|EEF00563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356557839|ref|XP_003547218.1| PREDICTED: uncharacterized protein LOC100817763 [Glycine max] Back     alignment and taxonomy information
>gi|449507676|ref|XP_004163099.1| PREDICTED: uncharacterized protein LOC101229012 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470481|ref|XP_004152945.1| PREDICTED: uncharacterized LOC101214290 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449454606|ref|XP_004145045.1| PREDICTED: uncharacterized protein LOC101217520 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359477306|ref|XP_002276974.2| PREDICTED: uncharacterized protein LOC100266667 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357447487|ref|XP_003594019.1| Mediator of DNA damage checkpoint protein [Medicago truncatula] gi|355483067|gb|AES64270.1| Mediator of DNA damage checkpoint protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255551613|ref|XP_002516852.1| pax transcription activation domain interacting protein, putative [Ricinus communis] gi|223543940|gb|EEF45466.1| pax transcription activation domain interacting protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|145338795|ref|NP_188785.2| BRCT domain-containing DNA repair protein [Arabidopsis thaliana] gi|11994384|dbj|BAB02343.1| unnamed protein product [Arabidopsis thaliana] gi|83319215|dbj|BAE53712.1| At3g21480 [Arabidopsis thaliana] gi|332642993|gb|AEE76514.1| BRCT domain-containing DNA repair protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query930
TAIR|locus:20899601041 AT3G21480 "AT3G21480" [Arabido 0.282 0.252 0.590 1.3e-112
TAIR|locus:2125442766 AT4G03130 "AT4G03130" [Arabido 0.318 0.386 0.460 2e-73
ZFIN|ZDB-GENE-041010-2141122 paxip1 "PAX interacting (with 0.206 0.171 0.358 5.7e-20
UNIPROTKB|A0JNA8984 PAXIP1 "PAX-interacting protei 0.197 0.186 0.340 3e-18
UNIPROTKB|G3MZP91195 PAXIP1 "PAX-interacting protei 0.197 0.153 0.340 5.4e-18
UNIPROTKB|Q6ZW491069 PAXIP1 "PAX-interacting protei 0.197 0.172 0.335 8.3e-18
RGD|1307547994 Paxip1 "PAX interacting (with 0.236 0.221 0.311 8.4e-18
MGI|MGI:18904301056 Paxip1 "PAX interacting (with 0.196 0.173 0.343 7.4e-17
ZFIN|ZDB-GENE-060810-1851914 im:7163673 "im:7163673" [Danio 0.221 0.107 0.305 3.7e-16
RGD|15594681279 Mdc1 "mediator of DNA damage c 0.218 0.158 0.279 8.1e-14
TAIR|locus:2089960 AT3G21480 "AT3G21480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 771 (276.5 bits), Expect = 1.3e-112, Sum P(4) = 1.3e-112
 Identities = 156/264 (59%), Positives = 189/264 (71%)

Query:   658 SPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRR 717
             +PA   TP    SP+CMG+ Y + SC+ +   S   +E   L     EP+S  K  RKRR
Sbjct:   754 TPAKSKTPSTNVSPICMGDEYHRLSCKDSFT-SHTTREFRSLTVPVAEPISETKSTRKRR 812

Query:   718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASG 777
             D+ SI VLFS HLDED+ K QKKIL R   SE SS+ +ATHF+ D F RTRNMLEAIASG
Sbjct:   813 DLGSICVLFSQHLDEDVTKHQKKILARFDISEASSMKEATHFIADNFTRTRNMLEAIASG 872

Query:   778 KPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLIT 837
             KPVVT  WLESI QV I++DE+ Y+LRD+KKEKEF F+M  SLARAR+ PLL+ +RV IT
Sbjct:   873 KPVVTTQWLESIDQVNIYVDEDMYILRDSKKEKEFCFNMGVSLARARQFPLLQGRRVFIT 932

Query:   838 PNIKPSKETISSLIKSVHGQAVERLGRSAXXXXXXXXXXXILSCEEDYEICEPFLEKGAA 897
             PN KP+  TI++L+K+VHG  VERLGRS+           +LSCEED  IC PFLE+GA 
Sbjct:   933 PNTKPALNTITTLVKAVHGLPVERLGRSSLSEDKVPENLLVLSCEEDRAICIPFLERGAE 992

Query:   898 VYSSELLLNGMVTQKLEYERYYMF 921
             VYSSELLLNG+VTQ+LEYERY +F
Sbjct:   993 VYSSELLLNGIVTQRLEYERYRLF 1016
GO:0003674 "molecular_function" evidence=ND
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2125442 AT4G03130 "AT4G03130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-214 paxip1 "PAX interacting (with transcription-activation domain) protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A0JNA8 PAXIP1 "PAX-interacting protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZP9 PAXIP1 "PAX-interacting protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZW49 PAXIP1 "PAX-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307547 Paxip1 "PAX interacting (with transcription-activation domain) protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890430 Paxip1 "PAX interacting (with transcription-activation domain) protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060810-185 im:7163673 "im:7163673" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1559468 Mdc1 "mediator of DNA damage checkpoint 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019839001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (909 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query930
smart0029278 smart00292, BRCT, breast cancer carboxy-terminal d 9e-05
>gnl|CDD|214602 smart00292, BRCT, breast cancer carboxy-terminal domain Back     alignment and domain information 
 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 719 MASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT--DATHFVT-DIFVRTRNMLEAIA 775
                   +   D++   + K++++ LG    SS++    TH +          +L+AIA
Sbjct: 4   FKGKTFYITGSFDKEERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLKAIA 63

Query: 776 SGKPVVTHLWLE 787
            G P+V   WL 
Sbjct: 64  LGIPIVKEEWLL 75

Length = 78

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 930
KOG2043896 consensus Signaling protein SWIFT and related BRCT 100.0
KOG4362684 consensus Transcriptional regulator BRCA1 [Replica 99.48
KOG35481176 consensus DNA damage checkpoint protein RHP9/CRB2/ 99.37
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 99.16
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 99.15
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 99.07
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 99.0
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.95
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 98.87
KOG3226508 consensus DNA repair protein [Replication, recombi 98.44
PF0053378 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP 98.38
smart0029280 BRCT breast cancer carboxy-terminal domain. 98.13
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 98.02
cd0002772 BRCT Breast Cancer Suppressor Protein (BRCA1), car 97.95
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 97.81
KOG1929 811 consensus Nucleotide excision repair factor NEF2, 97.66
KOG0966881 consensus ATP-dependent DNA ligase IV [Replication 96.46
KOG0966 881 consensus ATP-dependent DNA ligase IV [Replication 96.43
PF1273863 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W 96.21
PRK06195309 DNA polymerase III subunit epsilon; Validated 96.13
KOG0323635 consensus TFIIF-interacting CTD phosphatases, incl 96.0
PRK06063313 DNA polymerase III subunit epsilon; Provisional 95.96
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 95.93
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 95.85
PLN03122 815 Poly [ADP-ribose] polymerase; Provisional 95.85
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 95.47
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 95.25
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 95.17
KOG3226508 consensus DNA repair protein [Replication, recombi 94.45
PRK06063313 DNA polymerase III subunit epsilon; Provisional 94.23
PLN03123 981 poly [ADP-ribose] polymerase; Provisional 93.79
COG5163 591 NOP7 Protein required for biogenesis of the 60S ri 92.72
KOG2481570 consensus Protein required for normal rRNA process 92.33
PRK06195309 DNA polymerase III subunit epsilon; Validated 91.95
KOG2481 570 consensus Protein required for normal rRNA process 91.67
PRK14350669 ligA NAD-dependent DNA ligase LigA; Provisional 90.89
COG5275276 BRCT domain type II [General function prediction o 90.42
COG5163591 NOP7 Protein required for biogenesis of the 60S ri 90.37
PRK07956665 ligA NAD-dependent DNA ligase LigA; Validated 89.31
PRK14351689 ligA NAD-dependent DNA ligase LigA; Provisional 89.0
COG0272667 Lig NAD-dependent DNA ligase (contains BRCT domain 88.78
KOG3524 850 consensus Predicted guanine nucleotide exchange fa 86.24
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 83.61
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-33  Score=334.39  Aligned_cols=260  Identities=34%  Similarity=0.494  Sum_probs=221.9

Q ss_pred             CCCCCCCCcccccccCCCCcccCCcccccccccccccchhhHHHHhhhcCCCCCCCccchhhhhccCCCeEEEEcCCCCH
Q 002369          653 ESPCTSPANCITPVNAASPVCMGNGYIKQSCRKNLAKSCLVKEINRLIATEPEPLSPLKDLRKRRDMASIQVLFSHHLDE  732 (930)
Q Consensus       653 ~~~~~tp~~~~~~~~~~s~~~~~~~~~k~~c~r~L~rs~~~kEL~~L~~~~~ep~~~~Kdsr~rk~ms~vrVlFSG~~de  732 (930)
                      ..+...+....++-..+.|+|+..+|+...|   +-..+..+|+.....+..++..      +|     +.|+|+++.+.
T Consensus       605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr---~~~t~~~~e~~s~~~~~~e~~~------~r-----~~~lfs~~~~~  670 (896)
T KOG2043|consen  605 KPKTSQSSSQGESCPDVPTICVRTNYSGASR---LASTPAASELRSSSANLNELAS------KR-----IEVLFSDKNDG  670 (896)
T ss_pred             CcccccccccCCCCCCcccccccccccccch---hccccchhhhhhhhhccchhhc------cc-----eeeeeeeccCc
Confidence            3343344445567888999999999766555   5577788888877666666664      11     99999999876


Q ss_pred             HHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCCCcCcccCCchhhhhc
Q 002369          733 DIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEF  812 (930)
Q Consensus       733 e~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VDEe~YeL~D~e~Eke~  812 (930)
                      ..   ++..++.|||.++.++.++||+|+++++||.|||+||++|+|||+++||.+|++.|.|+||++|+|.|.+.|++|
T Consensus       671 ~~---~k~~~k~lg~s~~ss~~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~yil~D~ekEk~~  747 (896)
T KOG2043|consen  671 KN---YKLAKKFLGGSVASSDSEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKPYILHDEEKEKEF  747 (896)
T ss_pred             hh---hhhHHhhccceeecccccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhccccccCccccccCHHHHhcc
Confidence            53   567888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcccccC----CCCCCcEEEEecCCchhcc
Q 002369          813 GFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSALKD----DKLPDDLLILSCEEDYEIC  888 (930)
Q Consensus       813 GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs~lKd----~~~pd~~IVISceeD~~~~  888 (930)
                      ||+|..++.||+..++|.|+.||+++.+.|+...+.+||+++||.|+...++.....    ...+.++++|+|++|..+|
T Consensus       748 gf~l~ssl~RAr~~plL~g~~v~vtp~v~p~~~~v~eiie~~ggnvv~~~p~~~~~~k~~l~~~~~~~v~itc~~D~~~~  827 (896)
T KOG2043|consen  748 GFRLKSSLLRARADPLLEGINVHVTPSVTPSPKTVVEIIEISGGNVVSDSPKGVYTKKIVLSAHDLDVVGITCSEDRTFC  827 (896)
T ss_pred             CcchhhHHHHhhcchhhcCceEEeccccccCcchhHHHHhhcCcceecccCccceecccccccCcccceeeccccccccc
Confidence            999999999999999999999999999999999999999999999998877532111    1122467999999999999


Q ss_pred             HHHHhcCCe---EEeHHHHHHH-HhccccccccccccccccccCC
Q 002369          889 EPFLEKGAA---VYSSELLLNG-MVTQKLEYERYYMFIVLFTDLK  929 (930)
Q Consensus       889 ~~ll~~Gi~---VVSsEWILdS-IL~QkLe~E~y~Lf~d~v~~~~  929 (930)
                      ..++..+.+   +|+++++|.. +..|..++..|++..+.|+.++
T Consensus       828 ~~fl~~~~~~~~i~~~~~~l~~~~v~q~~~~~~~ri~l~~v~~~~  872 (896)
T KOG2043|consen  828 DNFLDNGLEQENIFSPEYVLKGGLVQQQEPSPALRIPLDNVTTTK  872 (896)
T ss_pred             ccccccccccccccchHhhhhccceeecccccceecccccccccc
Confidence            999999999   9999999998 4457778999999998887653

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair] Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1 Back     alignment and domain information
>smart00292 BRCT breast cancer carboxy-terminal domain Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair] Back     alignment and domain information
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3226 consensus DNA repair protein [Replication, recombination and repair] Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification] Back     alignment and domain information
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>COG5275 BRCT domain type II [General function prediction only] Back     alignment and domain information
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated Back     alignment and domain information
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional Back     alignment and domain information
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query930
3sqd_A219 Crystal Structure Of Human Ptip Brct56-Gamma H2ax C 5e-23
3k05_A200 The Crystal Structure Of Mdc1 Brct T2067d In Comple 1e-18
2ado_A196 Crystal Structure Of The Brct Repeat Region From Th 1e-18
2etx_A209 Crystal Structure Of Mdc1 Tandem Brct Domains Lengt 2e-18
2azm_A207 Crystal Structure Of The Mdc1 Brct Repeat In Comple 1e-14
3l40_A220 Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Doma 3e-09
>pdb|3SQD|A Chain A, Crystal Structure Of Human Ptip Brct56-Gamma H2ax Complex Length = 219 Back     alignment and structure 
Iteration: 1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 4/188 (2%)
Query: 735 IKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKI 794
           ++Q  K L  LG     S    TH +     RT   L AI+  K +VT  WLE   + + 
Sbjct: 29  VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQK 88
Query: 795 HIDEESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSV 854
            IDE++Y+LRD + E  F FS+  SL RA   PL K +   ITP I PS  T+ ++++  
Sbjct: 89  FIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECA 148
Query: 855 HGQAVER---LGRSAXXXXXXXXXXXIL-SCEEDYEICEPFLEKGAAVYSSELLLNGMVT 910
            G+ + +     +             IL SCE D  +C  +  +G  V+++E +L G++T
Sbjct: 149 GGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLT 208
Query: 911 QKLEYERY 918
           Q L+YE Y
Sbjct: 209 QTLDYESY 216
>pdb|3K05|A Chain A, The Crystal Structure Of Mdc1 Brct T2067d In Complex With A Minimal Recognition Tetrapeptide With An Amidated C-Terminus Length = 200 Back     alignment and structure
>pdb|2ADO|A Chain A, Crystal Structure Of The Brct Repeat Region From The Mediator Of Dna Damage Checkpoint Protein 1, Mdc1 Length = 196 Back     alignment and structure
>pdb|2ETX|A Chain A, Crystal Structure Of Mdc1 Tandem Brct Domains Length = 209 Back     alignment and structure
>pdb|2AZM|A Chain A, Crystal Structure Of The Mdc1 Brct Repeat In Complex With The Histone Tail Of Gamma-H2ax Length = 207 Back     alignment and structure
>pdb|3L40|A Chain A, Crystal Structure Of S. Pombe Brc1 Brct5-Brct6 Domains Length = 220 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query930
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 4e-55
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 2e-49
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 4e-45
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 2e-25
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 2e-22
1t15_A214 Breast cancer type 1 susceptibility protein; prote 1e-21
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 3e-21
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 5e-21
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 2e-19
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 2e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 4e-07
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 1e-06
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 3e-05
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 9e-05
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 1e-04
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 2e-04
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Length = 219 Back     alignment and structure
 Score =  189 bits (481), Expect = 4e-55
 Identities = 66/214 (30%), Positives = 106/214 (49%), Gaps = 5/214 (2%)

Query: 709 PLKDLRKRRDMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTR 768
                 K     +  VLF+   +   ++Q  K L  LG     S    TH +     RT 
Sbjct: 4   HHHHHMKLTPELTPFVLFTG-FEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTV 62

Query: 769 NMLEAIASGKPVVTHLWLESIAQVKIHIDEESYLLRDTKKEKEFGFSMPASLARARKHPL 828
             L AI+  K +VT  WLE   + +  IDE++Y+LRD + E  F FS+  SL RA   PL
Sbjct: 63  KFLTAISVVKHIVTPEWLEECFRCQKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPL 122

Query: 829 LKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRSA----LKDDKLPDDLLILSCEED 884
            K +   ITP I PS  T+ ++++   G+ + +          K +    +++++SCE D
Sbjct: 123 FKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEND 182

Query: 885 YEICEPFLEKGAAVYSSELLLNGMVTQKLEYERY 918
             +C  +  +G  V+++E +L G++TQ L+YE Y
Sbjct: 183 LHLCREYFARGIDVHNAEFVLTGVLTQTLDYESY 216
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Length = 209 Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Length = 220 Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Length = 259 Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Length = 235 Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Length = 214 Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Length = 229 Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Length = 241 Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Length = 210 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Length = 199 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Length = 107 Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298 Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Length = 112 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query930
3sqd_A219 PAX-interacting protein 1; tandem BRCT domains, ce 100.0
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 100.0
3l41_A220 BRCT-containing protein 1; BRC1, BRCT domain, tand 100.0
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 99.97
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 99.96
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 99.96
1t15_A214 Breast cancer type 1 susceptibility protein; prote 99.95
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 99.94
1kzy_C259 Tumor suppressor P53-binding protein 1; tandem-BRC 99.92
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.89
2vxb_A241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 99.85
3t7k_A256 RTT107, regulator of TY1 transposition protein 107 99.77
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 99.59
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 99.53
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 99.48
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 99.47
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 99.44
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 99.43
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 99.37
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 99.31
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 99.25
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 99.18
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 99.18
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 99.17
3olc_X298 DNA topoisomerase 2-binding protein 1; BRCT domain 99.17
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 99.02
2ebw_A97 DNA repair protein REV1; A/B/A 3 layers, parallel 98.73
3huf_A325 DNA repair and telomere maintenance protein NBS1; 98.73
4id3_A92 DNA repair protein REV1; BRCT domain, protein bind 98.71
2d8m_A129 DNA-repair protein XRCC1; parallel beta-sheet, DNA 98.48
3l46_A112 Protein ECT2; alternative splicing, guanine-nucleo 98.48
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 98.44
3ii6_X263 DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter 98.4
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 98.39
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 98.38
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 98.38
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 98.37
1z56_C264 DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA 98.34
2cou_A109 ECT2 protein; BRCT domain, RHO GTPase, structural 98.34
3l3e_A107 DNA topoisomerase 2-binding protein 1; BRCT domain 98.27
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 98.22
3pc6_A104 DNA repair protein XRCC1; BRCT domain, protein:pro 98.06
3u3z_A199 Microcephalin; DNA repair, cell cycle regulation, 98.04
1kzy_C 259 Tumor suppressor P53-binding protein 1; tandem-BRC 98.01
1wf6_A132 Similar to S.pombe -RAD4+/CUT5+product (A40727); B 98.0
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 97.99
1l0b_A229 BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu 97.99
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 97.97
2vxb_A 241 DNA repair protein RHP9; BRCT, nucleus, cell cycle 97.95
1t15_A214 Breast cancer type 1 susceptibility protein; prote 97.86
3pa6_A107 Microcephalin; BRCT domain, cell cycle; HET: MSE; 97.78
2etx_A209 Mediator of DNA damage checkpoint protein 1; tande 97.72
2ep8_A100 Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r 97.67
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 97.67
2nte_A210 BARD-1, BRCA1-associated ring domain protein 1; BR 97.59
3pc7_A88 DNA ligase 3; DNA repair, BRCT domain, protein:pro 97.56
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 97.5
3ef0_A372 RNA polymerase II subunit A C-terminal domain phos 97.44
1l7b_A92 DNA ligase; BRCT, autostructure, structural genomi 97.34
3ef1_A442 RNA polymerase II subunit A C-terminal domain phos 97.33
2k6g_A109 Replication factor C subunit 1; protein, BRCT, DNA 97.09
2ebu_A112 Replication factor C subunit 1; A/B/A 3 layers, pa 96.99
2cok_A113 Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r 96.89
4gns_A290 Chitin biosynthesis protein CHS5; FN3, BRCT, tetra 96.84
3al2_A235 DNA topoisomerase 2-binding protein 1; BRCT domain 96.61
3sqd_A 219 PAX-interacting protein 1; tandem BRCT domains, ce 96.42
2coe_A120 Deoxynucleotidyltransferase, terminal variant; BRC 96.37
2l42_A106 DNA-binding protein RAP1; BRCT domain, protein bin 96.09
2jw5_A106 DNA polymerase lambda; BRCT domain, family X polym 96.04
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 96.0
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 95.67
2dun_A133 POL MU, DNA polymerase MU; layers A/B/A, parallel 93.91
3l41_A 220 BRCT-containing protein 1; BRC1, BRCT domain, tand 92.78
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 85.09
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 83.22
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.4e-40  Score=337.13  Aligned_cols=202  Identities=32%  Similarity=0.540  Sum_probs=184.8

Q ss_pred             cCCCeEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCCCceEEEeCCCCCcHHHHHHHHCCCCEecHHHHHHHHHhCCCCC
Q 002369          718 DMASIQVLFSHHLDEDIIKQQKKILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHID  797 (930)
Q Consensus       718 ~ms~vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddisk~THLVa~k~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~VD  797 (930)
                      -+.+++|+|||+.+.+ .+.+.++|+.|||.|++++.+||||||+.+.||.|||+|++.|+|||+++||.+|+++|+++|
T Consensus        13 ~~~~~~i~~SG~~~~~-~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~   91 (219)
T 3sqd_A           13 PELTPFVLFTGFEPVQ-VQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFID   91 (219)
T ss_dssp             GGGCCEEEECSCCHHH-HHHHHHHHHHTTCEECSSGGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCC
T ss_pred             CCCCeEEEEeCCChHH-HHHHHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCCC
Confidence            3678999999997654 567899999999999999889999999999999999999999999999999999999999999


Q ss_pred             CcCcccCCchhhhhcCCCchHHhhhccCCCCCCCceEEEeCCCCCCHHHHHHHHHhCCcEEEeccCcc--cc--cCCCCC
Q 002369          798 EESYLLRDTKKEKEFGFSMPASLARARKHPLLKDQRVLITPNIKPSKETISSLIKSVHGQAVERLGRS--AL--KDDKLP  873 (930)
Q Consensus       798 Ee~YeL~D~e~Eke~GfsL~~SL~rArk~~LFkG~rfyItp~vkPske~L~~LIeagGGkVV~~~prs--~l--Kd~~~p  873 (930)
                      |++|++.|.+.|+.|||++..++.++++.+||+|+.|||++.+.|+++.|++||+++||+|+...|..  ++  +++..+
T Consensus        92 e~~y~l~d~~~e~~~~~~l~~~l~ra~~~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~  171 (219)
T 3sqd_A           92 EQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSL  171 (219)
T ss_dssp             SGGGBCCCHHHHHHTTCCHHHHHHHHHHSCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTS
T ss_pred             hHhccCCCchhhhhcCCChHHHhhhhccccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCC
Confidence            99999999999999999999999999889999999999999999999999999999999999987643  11  112233


Q ss_pred             CcEEEEecCCchhccHHHHhcCCeEEeHHHHHHHHhccccccccccc
Q 002369          874 DDLLILSCEEDYEICEPFLEKGAAVYSSELLLNGMVTQKLEYERYYM  920 (930)
Q Consensus       874 d~~IVISceeD~~~~~~ll~~Gi~VVSsEWILdSIL~QkLe~E~y~L  920 (930)
                      ..++||+|++|...|.++.+.|++||++|||++||++|+||||.|.|
T Consensus       172 ~~~ivis~~~d~~~~~~~~~~~~~v~s~E~il~~Il~q~ld~~~~~~  218 (219)
T 3sqd_A          172 SEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDYESYKF  218 (219)
T ss_dssp             CEEEEEECGGGGGGGHHHHHTTCCCEETHHHHHHHHHTCCCTTTSBC
T ss_pred             CCEEEEecccHHHHHHHHHHCCCcEEeHHHHHHHHHheeecchhccc
Confidence            46899999999999999999999999999999999999999999987
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens} Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A* Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae} Back     alignment and structure
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A Back     alignment and structure
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A* Back     alignment and structure
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B Back     alignment and structure
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5 Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3 Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A* Back     alignment and structure
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A Back     alignment and structure
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A* Back     alignment and structure
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A Back     alignment and structure
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A Back     alignment and structure
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A* Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Back     alignment and structure
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2 Back     alignment and structure
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Back     alignment and structure
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A Back     alignment and structure
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A Back     alignment and structure
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} Back     alignment and structure
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A* Back     alignment and structure
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens} Back     alignment and structure
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A* Back     alignment and structure
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A* Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 930
d1kzyc1153 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) 1e-07
d1t15a1109 c.15.1.3 (A:1649-1757) Breast cancer associated pr 3e-05
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 740 KILDRLGASEVSSITDATHFVTDIFVRTRNMLEAIASGKPVVTHLWLESIAQVKIHIDEE 799
            IL+        +       + D   RTR     +ASG P V+H+W+          +  
Sbjct: 73  YILEDF-NEAQCNTAYQCLLIADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYR 131

Query: 800 SYLL 803
           +YLL
Sbjct: 132 NYLL 135
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query930
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 99.65
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 99.47
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 99.36
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 99.06
d1t15a2102 Breast cancer associated protein, BRCA1 {Human (Ho 98.82
d1cdza_96 DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta 98.52
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 98.45
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 98.44
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 98.4
d1wf6a_132 DNA topoisomerase II binding protein 1, TopBP1 {Hu 98.4
d1in1a_88 DNA ligase III alpha {Human (Homo sapiens) [TaxId: 97.81
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.44
d1l7ba_92 NAD+-dependent DNA ligase, domain 4 {Thermus therm 97.31
d1kzyc1153 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 97.03
d1t15a1109 Breast cancer associated protein, BRCA1 {Human (Ho 97.02
d1kzyc2106 53BP1 {Human (Homo sapiens) [TaxId: 9606]} 96.93
d1l0ba297 Breast cancer associated protein, BRCA1 {Rat (Ratt 94.86
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.6e-17  Score=145.87  Aligned_cols=84  Identities=23%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             eEEEEcCCCCHHHHHHHHHHHHHcCCEEeccCC-CceEEEeCC-----CCCcHHHHHHHHCCCCEecHHHHHHHHHhCCC
Q 002369          722 IQVLFSHHLDEDIIKQQKKILDRLGASEVSSIT-DATHFVTDI-----FVRTRNMLEAIASGKPVVTHLWLESIAQVKIH  795 (930)
Q Consensus       722 vrVlFSG~~dee~~k~LKkiIkkLGG~Vaddis-k~THLVa~k-----~~RT~KfL~AIA~GkpIVSp~WL~eClkagk~  795 (930)
                      +.|++||+..++ .+.++++++.|||.+...++ .|||||+..     +.||.|||.|++.|+|||+++||.+|++++++
T Consensus         2 ~~i~~SGl~~~e-~~~l~~~i~~~Gg~~~~~~~~~~THlI~~~~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~~   80 (109)
T d1t15a1           2 MSMVVSGLTPEE-FMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKERKM   80 (109)
T ss_dssp             CEEEEESCCHHH-HHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTTSC
T ss_pred             EEEEECCCCHHH-HHHHHHHHHHcCCEEEeEecCCccEEEEecCcchhhHhhHHHHHHHHCCCccccHHHHHHHHHhCCc
Confidence            679999997655 57899999999999999997 899999963     67999999999999999999999999999999


Q ss_pred             CCCcCcccCCc
Q 002369          796 IDEESYLLRDT  806 (930)
Q Consensus       796 VDEe~YeL~D~  806 (930)
                      +||++|++...
T Consensus        81 l~e~~y~v~~~   91 (109)
T d1t15a1          81 LNEHDFEVRGD   91 (109)
T ss_dssp             CCGGGGBCCEE
T ss_pred             CCchheEEecc
Confidence            99999998753
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure