Citrus Sinensis ID: 002370

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIGCNLQYK

cccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccc

ccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccccccccHHHHHHHHHccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHEHHHEcc

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKrfssgppqLLTQICLALSALILRAVEHGKPIEKLFYSLQnlqsqdngNMAVLEMLTVLpeevidsqasdcnissaHRSQYGQELLSHTPMVVEFLMQQsdkrfdggvpvqlhdRNRKILRCLLSWVRAGCfteisqgslaahplLNFVFNSLQVQSSFDVAIEVLVELVgrheglpqallcRVPFLKELlllpaltdgdekVIGGLACLMSEIGQAAPSLIVEASPEALALADALLScvafpsedweiADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQvdessfnddgmvdlpdGLVQFRMNLVELLVDICQLLRSATFIQKVFfgswgsanvpipwkeVETKLFALNVVSEVVlqegqafdfSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDAsalidepsnLEILMWIGEALekrhlpledeeEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLidgdnnhslihnpaTYTQILSSATRGLYRmgtvfshlpvplptnpagddpIFALLRVFWPMLEKLFRSehmengnlSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTnfvsfqnhecyIRTASVVIEefghkdeygplfVTTFERFSQAASVRALNssyicdqepDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGyttsipegsfNAMAIQVISHSGEGLVSNVVYALLGVSAMsrihsggscfqkkrsqvcnnpatigcnlqyk

MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFlkellllpalTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIGCNLQYK

*****QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVID***************YGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIGCN****

***DLQIKVAQAVHVLNHD******VAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDAS*****KHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLI*************TYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLG****IPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIGCNLQYK

**MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSF*DDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRIHSGGSCFQKKRSQVCNNPATIGCNLQYK

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		930	2.2.26 [Sep-21-2011]
Q6P2B1		923	Transportin-3 OS=Mus musc	yes	no	0.860	0.866	0.228	6e-33
Q9Y5L0		923	Transportin-3 OS=Homo sap	yes	no	0.819	0.825	0.229	9e-33
Q9USZ2		955	Uncharacterized protein C	yes	no	0.738	0.719	0.248	5e-23
A7YWD2		963	Importin-13 OS=Bos taurus	no	no	0.754	0.728	0.213	3e-19
Q8K0C1		963	Importin-13 OS=Mus muscul	no	no	0.754	0.728	0.212	2e-18
O94829		963	Importin-13 OS=Homo sapie	no	no	0.754	0.728	0.212	2e-18
Q5R974		963	Importin-13 OS=Pongo abel	no	no	0.750	0.724	0.211	3e-18
Q9JM04		963	Importin-13 OS=Rattus nor	no	no	0.753	0.727	0.213	4e-17
Q99189		972	mRNA transport regulator	yes	no	0.546	0.522	0.223	9e-16
Q5ZIC8		958	Importin-13 OS=Gallus gal	no	no	0.749	0.727	0.217	6e-14

>sp\|Q6P2B1\|TNPO3_MOUSE Transportin-3 OS=Mus musculus GN=Tnpo3 PE=1 SV=1	Back alignment and function desciption

 Score =  143 bits (361), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 209/914 (22%), Positives = 383/914 (41%), Gaps = 114/914 (12%)

Query: 9   VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68
           V QAV  L HD +   +  A+ WL + Q++  AWEI+  +L   RQ    D E  +FAAQ
Sbjct: 11  VYQAVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQI-RQ----DVESCYFAAQ 65

Query: 69  ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128
            +K KIQ   Y L + +  +L ++LL   +      P ++TQ+ LA++ L L+       
Sbjct: 66  TMKMKIQTSFYELPTDSHASLRDSLLTHIQNLKDLSPVIVTQLALAIADLALQMPSWKGC 125

Query: 129 IEKLFYSLQNLQSQDNGNMA-VLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTP 187
           ++ L     N    D  ++  +LE+LTVLPEEV    +    I +  R++  ++L  ++ 
Sbjct: 126 VQTLVEKYSN----DVTSLPFLLEILTVLPEEV---HSRSLRIGANRRTEIIEDLAFYSS 178

Query: 188 MVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNFVF 247
            VV  LM   +K    G   ++     K+ RCL SW   G    +    +A + LL  +F
Sbjct: 179 TVVSLLMTCVEK---AGTDEKM---LMKVFRCLGSWFNLGV---LDSNFMANNKLLALLF 229

Query: 248 NSLQV--------QSSFDVAIEVLVELVGRHEGLPQAL-LCRVPFLKELLLLPALTDGDE 298
             LQ         +++ D     L  +      LP A+ L +     E     A+   D 
Sbjct: 230 EVLQQDKTSSNLHEAASDCVCSALYAIENVETNLPLAMQLFQGVLTLETAYHMAVAREDL 289

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALA---LADALLSCVAFPSEDWEIADSTLQFWS 355
             +     + +E+ +     IV    + L      + LL C   P   +E+ + +  FW 
Sbjct: 290 DKVLNYCRIFTELCETFLEKIVCTPGQGLGDLRTLELLLICAGHPQ--YEVVEISFNFWY 347

Query: 356 TLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQ 415
            L  ++         N + +  +F +    LL AL    Q++    + +G+ +  D   +
Sbjct: 348 RLGEHL------YKTNDEVIHSIFKAYIQRLLHALARHCQLEP---DHEGVPEETDDFGE 398

Query: 416 FRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEG 475
           FRM + +L+ D+  L+ S     ++ + +    N   PW+  E  LF +  +++ V  E 
Sbjct: 399 FRMRVSDLVKDLIFLIGSMECFAQL-YSTLKEGNP--PWEVTEAVLFIMAAIAKSVDPEN 455

Query: 476 QAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLA-DVIGSYSKWISAFQTNARPLLLFL 534
                 V+  +V          L   +H   R  + +++G  S+ +        P+L +L
Sbjct: 456 NPTLVEVLEGVV---------HLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYL 506

Query: 535 AAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGA 594
             G+ E   ++A A A+  IC      + +  N   L+ I  +L+   L  E    ++  
Sbjct: 507 MKGLCEKPLASAAAKAIHNICSVCRDHMAQHFN--GLLEIAHSLDSFMLSPEAAVGLLKG 564

Query: 595 ISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLY 654
            +L+L  +   ++    L+ L S    A+ KL+  + ++ +  +P  +          L 
Sbjct: 565 TALVLARLPLDKI-TECLSELCSVQVMALKKLLSQEPSNGISSDPTVF----------LD 613

Query: 655 RMGTVFSHLPVPLPTNPAGDD----PIFALLRVFWPMLEKLFRSEHMENGNLSTAACRAL 710
           R+  +F H      TNP  ++    P   +++  WP+L +   ++H  +  +    CR L
Sbjct: 614 RLAVIFRH------TNPIVENGQTHPCQKVIQEIWPVLSETL-NKHRADNRIVERCCRCL 666

Query: 711 SLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHK--------DEY 762
             A++  G+    LL Q L     N      H C++   S++++E+G +        D  
Sbjct: 667 RFAVRCVGKGSAALL-QPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDML 725

Query: 763 GPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE 822
             L + TF+   Q   ++           PD V+     A+ F++ S   +L +    + 
Sbjct: 726 QALCIPTFQLLEQQNGLQ---------NHPDTVDDLFRLATRFIQRSPVTLLRSQ---VV 773

Query: 823 VSFQKAAICCTAM-HRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSF---NAMAIQVI 878
           +   + AI  T + HR A  + M +L   +   +A       +  E  F     +  QV+
Sbjct: 774 IPILQWAIASTTLDHRDANSSVMRFLRDLIHTGVA-------NDHEEDFELRKELIGQVM 826

Query: 879 SHSGEGLVSNVVYA 892
           S  G+ LVS +++ 
Sbjct: 827 SQLGQQLVSQLLHT 840

Seems to function in nuclear protein import as nuclear transport receptor. In vitro, mediates the nuclear import of splicing factor SR proteins RBM4, SFRS1 and SFRS2, by recognizing phosphorylated RS domains.
Mus musculus (taxid: 10090)

>sp\|Q9Y5L0\|TNPO3_HUMAN Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3	Back alignment and function description

>sp\|Q9USZ2\|YNR7_SCHPO Uncharacterized protein C11G11.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC11G11.07 PE=4 SV=2	Back alignment and function description

>sp\|A7YWD2\|IPO13_BOVIN Importin-13 OS=Bos taurus GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q8K0C1\|IPO13_MOUSE Importin-13 OS=Mus musculus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|O94829\|IPO13_HUMAN Importin-13 OS=Homo sapiens GN=IPO13 PE=1 SV=3	Back alignment and function description

>sp\|Q5R974\|IPO13_PONAB Importin-13 OS=Pongo abelii GN=IPO13 PE=2 SV=1	Back alignment and function description

>sp\|Q9JM04\|IPO13_RAT Importin-13 OS=Rattus norvegicus GN=Ipo13 PE=2 SV=1	Back alignment and function description

>sp\|Q99189\|MTR10_YEAST mRNA transport regulator MTR10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR10 PE=1 SV=1	Back alignment and function description

>sp\|Q5ZIC8\|IPO13_CHICK Importin-13 OS=Gallus gallus GN=IPO13 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		930
359488588		1015	PREDICTED: transportin-3-like [Vitis vin	0.975	0.893	0.804	0.0
255543441		1020	Transportin-3, putative [Ricinus communi	0.975	0.889	0.795	0.0
449501328		1029	PREDICTED: transportin-3-like [Cucumis s	0.975	0.881	0.767	0.0
224131372		1008	predicted protein [Populus trichocarpa]	0.962	0.887	0.773	0.0
356561051		1011	PREDICTED: transportin-3-like [Glycine m	0.975	0.897	0.748	0.0
449455816		1031	PREDICTED: LOW QUALITY PROTEIN: transpor	0.973	0.877	0.750	0.0
18391456		1005	exportin 1-like protein domain-containin	0.964	0.892	0.658	0.0
297849682		1007	hypothetical protein ARALYDRAFT_471447 [	0.964	0.890	0.660	0.0
15215746		1005	At1g12930/F13K23_14 [Arabidopsis thalian	0.964	0.892	0.657	0.0
8698739		974	Contains similarity to transportin-SR fr	0.931	0.889	0.632	0.0

>gi\|359488588\|ref\|XP_002276597.2\| PREDICTED: transportin-3-like [Vitis vinifera] gi\|296082227\|emb\|CBI21232.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1471 bits (3808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/914 (80%), Positives = 811/914 (88%), Gaps = 7/914 (0%)

Query: 3   MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQ----SFLT 58
           M+LQIKVAQAVHVLNHD++SCNRVAANQWLVQFQQTD AW++ATSILTSD      SFL+
Sbjct: 1   MELQIKVAQAVHVLNHDSQSCNRVAANQWLVQFQQTDLAWDVATSILTSDHHRHHHSFLS 60

Query: 59  DFEVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSAL 118
           DFEVEFFAAQILKRKIQNEGYYLQ  AKDALLNALL+AAKRFSSGPPQLLTQICLALSAL
Sbjct: 61  DFEVEFFAAQILKRKIQNEGYYLQLGAKDALLNALLLAAKRFSSGPPQLLTQICLALSAL 120

Query: 119 ILRAVEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQY 178
           I+R+ EH KPIE+LFYSLQNLQSQD+ N+AVLEMLTVLPEE++++Q  DCNISS  R QY
Sbjct: 121 IIRSTEHRKPIEQLFYSLQNLQSQDDSNIAVLEMLTVLPEEIVENQNIDCNISSDRRCQY 180

Query: 179 GQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLA 238
           GQELLSHT  V+EFL+QQS+K FDGG+  QLH+RNRKILRCLLSWVRAGCF EI  G L 
Sbjct: 181 GQELLSHTTRVLEFLLQQSEKSFDGGI--QLHERNRKILRCLLSWVRAGCFAEIPPGLLP 238

Query: 239 AHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDE 298
            HPLLNFV+NSLQV S+FD+AIEVL+ELVGRHEGLPQ LLCR+ FLKE+LLLPAL +GDE
Sbjct: 239 GHPLLNFVYNSLQVSSTFDLAIEVLIELVGRHEGLPQVLLCRIQFLKEVLLLPALNNGDE 298

Query: 299 KVIGGLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLA 358
           KVI GLACLMSEIGQAAPSLIVEAS EA  LADALLSCVAFPSEDWEIAD+TLQFWS+LA
Sbjct: 299 KVISGLACLMSEIGQAAPSLIVEASAEAHLLADALLSCVAFPSEDWEIADTTLQFWSSLA 358

Query: 359 SYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD-GMVDLPDGLVQFR 417
           SYILGLD+   KNKK VEDMF  VFSALLDA LLRAQVD+S+FND+ G +DLPDGLV FR
Sbjct: 359 SYILGLDSDSGKNKKDVEDMFSPVFSALLDAFLLRAQVDDSTFNDESGTLDLPDGLVHFR 418

Query: 418 MNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQA 477
           MNLVELLVDICQLL+S TFIQK+FFG W S N+PIPW++VETK+FALNVV+EVVLQEGQ 
Sbjct: 419 MNLVELLVDICQLLKSTTFIQKLFFGGWVSINLPIPWRDVETKMFALNVVAEVVLQEGQT 478

Query: 478 FDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAG 537
           FDFSVIMQL+ +LS+   ++LKGFM IVYRSLADV+GSYSK IS+F+TNARPLLLFLA G
Sbjct: 479 FDFSVIMQLLTILSSMAPDKLKGFMRIVYRSLADVVGSYSKLISSFRTNARPLLLFLATG 538

Query: 538 ISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISL 597
           ISE +SS+ACASALRK CEDASA+I EPSNLEILMWIGE LEKRHLPLEDEEEV+ AI+L
Sbjct: 539 ISEPLSSSACASALRKFCEDASAVICEPSNLEILMWIGEGLEKRHLPLEDEEEVISAITL 598

Query: 598 ILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMG 657
           IL SV NKELKNNLLARLLSSSYEAIGKLI  ++ HSL  NPA YTQIL+SA RGLYRMG
Sbjct: 599 ILSSVPNKELKNNLLARLLSSSYEAIGKLIGEEDKHSLKQNPAAYTQILTSAVRGLYRMG 658

Query: 658 TVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSS 717
           TVFSHL  PL   P+ DDPI  LL VFWP+LEKLFRSEHMENG+LS AACRALS A+QSS
Sbjct: 659 TVFSHLAGPLSIGPSPDDPILVLLSVFWPVLEKLFRSEHMENGSLSAAACRALSQAVQSS 718

Query: 718 GQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAA 777
           GQHFVTLLP+VLDCLS NFV FQ+HECYIRTASVV+EEFGHK+EYGPLF++ FERF+ AA
Sbjct: 719 GQHFVTLLPEVLDCLSKNFVLFQSHECYIRTASVVLEEFGHKEEYGPLFISAFERFTYAA 778

Query: 778 SVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHR 837
           SV ALNSSYICDQEPDLVEAYTNF STFVR S KEVLAASG+LLEVSFQKAAICCTAMHR
Sbjct: 779 SVMALNSSYICDQEPDLVEAYTNFTSTFVRGSPKEVLAASGSLLEVSFQKAAICCTAMHR 838

Query: 838 GAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVS 897
           GAALAAMSY+SCFLE  L SLL   T IPEGSF+A+AIQVISHSGEGLVSNVVYALLGVS
Sbjct: 839 GAALAAMSYMSCFLEVGLISLLESMTCIPEGSFSAVAIQVISHSGEGLVSNVVYALLGVS 898

Query: 898 AMSRIHSGGSCFQK 911
           AMSR+H   +  Q+
Sbjct: 899 AMSRVHKSATILQQ 912

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255543441\|ref\|XP_002512783.1\| Transportin-3, putative [Ricinus communis] gi\|223547794\|gb\|EEF49286.1\| Transportin-3, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449501328\|ref\|XP_004161339.1\| PREDICTED: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224131372\|ref\|XP_002321068.1\| predicted protein [Populus trichocarpa] gi\|222861841\|gb\|EEE99383.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356561051\|ref\|XP_003548799.1\| PREDICTED: transportin-3-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455816\|ref\|XP_004145646.1\| PREDICTED: LOW QUALITY PROTEIN: transportin-3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|18391456\|ref\|NP_563920.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana] gi\|332190829\|gb\|AEE28950.1\| exportin 1-like protein domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297849682\|ref\|XP_002892722.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata] gi\|297338564\|gb\|EFH68981.1\| hypothetical protein ARALYDRAFT_471447 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15215746\|gb\|AAK91418.1\| At1g12930/F13K23_14 [Arabidopsis thaliana] gi\|27363440\|gb\|AAO11639.1\| At1g12930/F13K23_14 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|8698739\|gb\|AAF78497.1\|AC012187_17 Contains similarity to transportin-SR from Homo sapiens gb\|AF145029. ESTs gb\|T46556, gb\|AI993189, gb\|T45501, gb\|AA394463 come from this gene [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		930
TAIR\|locus:2010381		1005	AT1G12930 "AT1G12930" [Arabido	0.970	0.898	0.647	9.20000000001e-313
UNIPROTKB\|F1SMQ0		921	TNPO3 "Uncharacterized protein	0.424	0.428	0.257	4.5e-34
TAIR\|locus:2154159		958	MOS14 "AT5G62600" [Arabidopsis	0.556	0.540	0.255	7.4e-33
UNIPROTKB\|C9J7E5		957	TNPO3 "Uncharacterized protein	0.847	0.823	0.231	1.4e-32
ZFIN\|ZDB-GENE-040426-708		923	tnpo3 "transportin 3" [Danio r	0.419	0.422	0.256	7.7e-31
MGI\|MGI:1196412		923	Tnpo3 "transportin 3" [Mus mus	0.424	0.427	0.257	1e-30
UNIPROTKB\|Q9Y5L0		923	TNPO3 "Transportin-3" [Homo sa	0.424	0.427	0.257	2.1e-30
UNIPROTKB\|A5D7C4		923	TNPO3 "TNPO3 protein" [Bos tau	0.424	0.427	0.257	5.7e-30
UNIPROTKB\|F1N8G5		955	IPO13 "Importin-13" [Gallus ga	0.756	0.737	0.229	7e-30
RGD\|1308938		929	Tnpo3 "transportin 3" [Rattus	0.424	0.425	0.257	1.2e-29

TAIR\|locus:2010381 AT1G12930 "AT1G12930" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3000 (1061.1 bits), Expect = 9.2e-313, P = 9.2e-313
 Identities = 594/917 (64%), Positives = 731/917 (79%)

Query:     3 MDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEV 62
             M+LQ KVA+A+HVLNHD ES NRVAANQWLVQFQ T AAW+++TS+LTS   S    F++
Sbjct:     1 MELQRKVAEAIHVLNHDPESSNRVAANQWLVQFQLTPAAWDVSTSLLTSPIVSL---FDL 57

Query:    63 EFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA 122
             +FFAAQIL+RKIQNE   LQS AKDALLNALL+AAKR+SSG PQLLTQICLALSAL+L +
Sbjct:    58 QFFAAQILRRKIQNEASNLQSTAKDALLNALLLAAKRYSSGVPQLLTQICLALSALLLHS 117

Query:   123 VEHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQEL 182
               + KP +KL ++LQNLQ+ D+GN+ +LE+LTVLPEE+ D++        +H S   QEL
Sbjct:   118 DPYSKPFDKLMFALQNLQAHDDGNVVLLELLTVLPEEISDTR------HFSHHSDLRQEL 171

Query:   183 LSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPL 242
             LSHT MV++FL+QQS+ +F    P+  HD NRKILRCLLSWVRAGCF+EI QG++ +HPL
Sbjct:   172 LSHTSMVLDFLLQQSENQFVS--PLYPHDNNRKILRCLLSWVRAGCFSEIPQGAVPSHPL 229

Query:   243 LNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFXXXXXXXXXXTDGDEKVIG 302
             LN+VFN+LQ  ++FD+AIEVLVELV RHE LPQ LL +V F           + D K+I 
Sbjct:   230 LNYVFNALQ-GTTFDLAIEVLVELVTRHEDLPQVLLYKVQFLRDTLLKPALINADLKIIS 288

Query:   303 GLACLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYIL 362
             GLACLMSEIGQAAP LIVEAS EAL L DA+LSCV FPSEDWEIADST+QFWST A+YIL
Sbjct:   289 GLACLMSEIGQAAPCLIVEASSEALILTDAILSCVTFPSEDWEIADSTVQFWSTFATYIL 348

Query:   363 GLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGM-VDLPDGLVQFRMNLV 421
              L  +   ++  V+D F  VFSAL+DAL+LRAQVDE + +D+   +DLPDGL+ FR NL+
Sbjct:   349 SLGGNRQNDRTRVKDTFLPVFSALVDALVLRAQVDEFTSSDESPGLDLPDGLLHFRNNLL 408

Query:   422 ELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFS 481
             ELLVDICQLL   TF+ K+FFG   S++V +P +E+E KLFAL  VSE++LQEG+AFDF+
Sbjct:   409 ELLVDICQLLHPTTFVSKLFFGGVPSSSVSMPLREIEAKLFALTAVSEIILQEGEAFDFA 468

Query:   482 VIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISEA 541
             +IMQLV+  S   S ELKGF+ +VYRSLADV+GSYS+WIS F +NARPLLLFLA GISE 
Sbjct:   469 LIMQLVSAFSVRPSSELKGFISVVYRSLADVVGSYSRWISVFPSNARPLLLFLAGGISEP 528

Query:   542 VSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILGS 601
             + S+ACASALRKICEDA A+I E SNL+ILMWIGE LE+  L LEDEEEV+ AI++ILGS
Sbjct:   529 ICSHACASALRKICEDAPAVIQETSNLDILMWIGECLEQWDLTLEDEEEVITAITVILGS 588

Query:   602 VSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFS 661
             V+NKEL+N LL +LLSSSY  + KL+D D   S   +PATYT++LSS TRGLYR+GTVFS
Sbjct:   589 VANKELQNKLLTQLLSSSYGVLSKLVDEDAESSGRQSPATYTRMLSSVTRGLYRIGTVFS 648

Query:   662 HLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF 721
             HL   LP+ P  D PI +LL VFWP+LEKLFRSEHME+G+L+ AACRALS+A+QSSG+HF
Sbjct:   649 HLATSLPSVPVADGPILSLLTVFWPILEKLFRSEHMESGSLAAAACRALSVAVQSSGEHF 708

Query:   722 VTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRA 781
             + LLP VLDCLS NF+SFQ+ ECYIRTA V+ EEF HK+EYG LF+TTFERF+QA+S+  
Sbjct:   709 MLLLPSVLDCLSRNFLSFQSQECYIRTACVIAEEFCHKEEYGSLFITTFERFTQASSLMG 768

Query:   782 LNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAAL 841
             +NSSYICDQEPDLVEAY NFAS  +R+  KE+L  SG LLE+SF KAAICCTAMHRGAAL
Sbjct:   769 INSSYICDQEPDLVEAYVNFASALIRSCHKELLGTSGTLLEISFHKAAICCTAMHRGAAL 828

Query:   842 AAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSR 901
             AAMSYLS FLE  L+S++    SI +GSF+ +++QV+SH GEGL+SN+VYALLGV+AMSR
Sbjct:   829 AAMSYLSGFLEVSLSSMIETVNSISDGSFSVVSVQVVSHCGEGLLSNLVYALLGVAAMSR 888

Query:   902 IHSGGSCFQKKRSQVCN 918
             +H   +  Q+  + +C+
Sbjct:   889 VHKCSTILQQLAA-ICS 904

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB\|F1SMQ0 TNPO3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

TAIR\|locus:2154159 MOS14 "AT5G62600" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J7E5 TNPO3 "Uncharacterized protein" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-708 tnpo3 "transportin 3" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1196412 Tnpo3 "transportin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y5L0 TNPO3 "Transportin-3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7C4 TNPO3 "TNPO3 protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N8G5 IPO13 "Importin-13" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

RGD\|1308938 Tnpo3 "transportin 3" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pm.C_LG_XIV000378	hypothetical protein (1008 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		930
pfam08389		147	pfam08389, Xpo1, Exportin 1-like protein	2e-17
smart00913		67	smart00913, IBN_N, Importin-beta N-terminal domain	4e-04

>gnl\|CDD\|219817 pfam08389, Xpo1, Exportin 1-like protein	Back alignment and domain information

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 15/161 (9%)

Query: 104 PPQLLTQICLALSALILRAVEHGKPIEKLFYSL-QNLQSQDNGNMAVLEMLTVLPEEVID 162
           P  +  ++ LAL+ L  +  E        F  L   L S  +G   +L +L VLPEE+ D
Sbjct: 1   PKFIRNKLALALAELAKQ--EWPSNWPTFFPDLVSLLSSSPSGCELLLRILKVLPEEIFD 58

Query: 163 SQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLS 222
              +   ++   R++    L S  P ++E L+Q  +        +         L+CL S
Sbjct: 59  FSRTP--LTQQRRNRLKDLLRSQMPQILELLLQILENSVSAHSEL-----LSATLKCLGS 111

Query: 223 WVRAGCFTEISQGSLAAHPLLNFVFNSLQVQSSFDVAIEVL 263
           W+       I  G +   PLLN +F  L      + A+E L
Sbjct: 112 WLS-----WIPIGLILNDPLLNLLFQLLSDPDLREAAVECL 147

The sequences featured in this family are similar to a region close to the N-terminus of yeast exportin 1 (Xpo1, Crm1). This region is found just C-terminal to an importin-beta N-terminal domain (pfam03810) in many members of this family. Exportin 1 is a nuclear export receptor that interacts with leucine-rich nuclear export signal (NES) sequences, and Ran-GTP, and is involved in translocation of proteins out of the nucleus. Length = 147

>gnl\|CDD\|197981 smart00913, IBN_N, Importin-beta N-terminal domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		930
KOG2022		982	consensus Nuclear transport receptor LGL2 (importi	100.0
KOG2081		559	consensus Nuclear transport regulator [Intracellul	100.0
KOG2021		980	consensus Nuclear mRNA export factor receptor LOS1	100.0
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	100.0
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	100.0
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	100.0
KOG2020		1041	consensus Nuclear transport receptor CRM1/MSN5 (im	100.0
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.95
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	99.9
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.83
KOG1992		960	consensus Nuclear export receptor CSE1/CAS (import	99.67
PF08389		148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	99.66
KOG1410		1082	consensus Nuclear transport receptor RanBP16 (impo	99.65
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	99.5
COG5656		970	SXM1 Importin, protein involved in nuclear import	99.38
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	99.05
KOG1993		978	consensus Nuclear transport receptor KAP120 (impor	98.91
PF03810		77	IBN_N: Importin-beta N-terminal domain; InterPro:	98.74
KOG2171		1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.6
KOG2023		885	consensus Nuclear transport receptor Karyopherin-b	97.91
KOG0915		1702	consensus Uncharacterized conserved protein [Funct	97.58
COG5215		858	KAP95 Karyopherin (importin) beta [Intracellular t	97.49
KOG1824		1233	consensus TATA-binding protein-interacting protein	96.87
PF08506		370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	96.55
COG5657		947	CSE1 CAS/CSE protein involved in chromosome segreg	96.5
KOG1991		1010	consensus Nuclear transport receptor RANBP7/RANBP8	95.75
KOG0212		675	consensus Uncharacterized conserved protein [Funct	95.57
KOG1241		859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.32
KOG1242		569	consensus Protein containing adaptin N-terminal re	95.24
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.11
PF03378		435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	94.58
PF08167		165	RIX1: rRNA processing/ribosome biogenesis	93.5
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	93.33
PRK09687		280	putative lyase; Provisional	92.88
PF08767		319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	91.9
PF10508		503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	91.87
PF02985		31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	91.66
PF01602		526	Adaptin_N: Adaptin N terminal region; InterPro: IP	89.75
KOG1824		1233	consensus TATA-binding protein-interacting protein	89.24
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	87.59
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	87.36
KOG2274		1005	consensus Predicted importin 9 [Intracellular traf	86.79
PF12755		97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	86.45
PF12460		415	MMS19_C: RNAPII transcription regulator C-terminal	85.77
KOG0166		514	consensus Karyopherin (importin) alpha [Intracellu	84.71
COG5101		1053	CRM1 Importin beta-related nuclear transport recep	84.34
PF12348		228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	83.74
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	82.38
PF13513		55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	81.79
COG5181		975	HSH155 U2 snRNP spliceosome subunit [RNA processin	81.18
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	80.63
KOG0213		1172	consensus Splicing factor 3b, subunit 1 [RNA proce	80.35

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=3.2e-93  Score=781.77  Aligned_cols=869  Identities=17%  Similarity=0.243  Sum_probs=679.3

Q ss_pred             CCchHHHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCC
Q 002370            1 MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYY   80 (930)
Q Consensus         1 ~~~~~~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~   80 (930)
                      |+.+.+++|+++|..||++++++.++.+++||++.|+||+||.+++.||+.++.     .++|||||.||+.||+++|++
T Consensus         1 md~~~Ia~v~~~v~~lY~~~~~~~~a~~qk~Lq~aq~S~Q~w~~s~~llQ~~k~-----~evqyFGAltL~~ki~~~~e~   75 (982)
T KOG2022|consen    1 MDSDLIATVEELVTTLYSHRNHENDAITQKWLQDAQCSQQGWHFSWQLLQPDKS-----SEVQYFGALTLHDKINTRWEE   75 (982)
T ss_pred             CCchHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCch-----hHHHHHhHHHHHHHHHhhhcc
Confidence            776779999999999999889999999999999999999999999999998774     588999999999999999999


Q ss_pred             CChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccC----CCchhHHHHHHHh
Q 002370           81 LQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQS----QDNGNMAVLEMLT  154 (930)
Q Consensus        81 l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~----~~~~~~~~L~iL~  154 (930)
                      +|+++...|+.+++..+..++.||+.|.||+|.++|.+.+++.  .||+++.+++..++....    ....+.++|+.|+
T Consensus        76 ~~~~~~~qL~~klf~~l~~~~g~~~lVl~kl~~sLasl~l~~~~d~Wp~ai~~vi~~l~~q~~p~v~ad~n~~~~Le~Ls  155 (982)
T KOG2022|consen   76 CPANEAVQLKLKLFLILSRFAGGPKLVLNKLCASLASLILYMVPDLWPTAIQDVIPTLQGQASPLVLADINCEILLEVLS  155 (982)
T ss_pred             CChhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHccccCCchHHHHHHHHhcccCccccchhhHHHHHHHhc
Confidence            9999999999999999999999999999999999999999985  699999999999986321    1235679999999


Q ss_pred             hhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCc
Q 002370          155 VLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQ  234 (930)
Q Consensus       155 ~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~  234 (930)
                      .+|+|..+.   +  ++..+|..++.++......++.++..++....+......+-..+..+++|+.+|+++.   ..+.
T Consensus       156 ~~p~e~q~~---~--l~~t~~~~l~~eLak~~~~v~~l~e~vlr~~~n~t~s~~~~i~~~~a~dCv~~Wi~~i---~~~~  227 (982)
T KOG2022|consen  156 FMPAEFQHV---T--LPLTRRSVLRGELAKFSENVISLLEVVLRGGSNSTSSLINLIFKQAAVDCVEQWIRYI---SLTG  227 (982)
T ss_pred             cCcHhhhhc---c--chhHHHHHHHHHHHHHHHHHhHHHHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHh---cccc
Confidence            999999643   2  7788999999999999999999888888765422110011146788999999999965   2232


Q ss_pred             chhcccchHHHHHHhcCC--C---------------CcHHHHHHHHHHHHhccC--ChhH---HHHhhhhh-hHHhhh-c
Q 002370          235 GSLAAHPLLNFVFNSLQV--Q---------------SSFDVAIEVLVELVGRHE--GLPQ---ALLCRVPF-LKELLL-L  290 (930)
Q Consensus       235 ~~i~~~~ll~~l~~~L~~--~---------------~~~~~a~~~l~ei~~~~~--~~~~---~l~~~~~~-l~~~~~-~  290 (930)
                      -  ....++..++..+..  .               .+++..+...+..+...+  .|.+   .|++.+.+ +++.-. .
T Consensus       228 ~--~c~~i~~~ll~~l~~s~~~~~~a~~~cmt~~~n~la~~~l~~~v~~i~q~d~~~y~nti~~li~i~~~~l~e~~~~~  305 (982)
T KOG2022|consen  228 M--DCDQITQVLLDVLGQSTEGSYEAAEKCMTIFGNVLADDTLLASVNDIIQPDCEFYRNTITLLISICLGILQEVSGKI  305 (982)
T ss_pred             c--cHHHHHHHHHHHHhhhccccccchhhhcccchhhhccchHHHHHHHhcChHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            2  233455555555541  1               111111111111111111  1222   23333333 222111 0


Q ss_pred             hhhccCc--HhHHhhHHHHHHHHHHhhhHHHHhc------ChhHHHHHHHHHhcccCCCCCchhh----hhcHHHHHHHH
Q 002370          291 PALTDGD--EKVIGGLACLMSEIGQAAPSLIVEA------SPEALALADALLSCVAFPSEDWEIA----DSTLQFWSTLA  358 (930)
Q Consensus       291 ~~~~~~d--~d~~~~l~~l~~~~~e~~~~~l~~~------~~~~~~ll~~ll~~~~~p~~d~~v~----~~~~~fW~~l~  358 (930)
                      +..++.|  +|....++++++..+|++.+.+.++      +..+.++++.|+.|+++||+ |++.    ..++.|||.|+
T Consensus       306 ~~~e~~d~~~e~i~~~~~i~v~~~En~l~~lid~~~~g~~~e~v~rlv~vll~~t~~PG~-ypveE~~S~~~l~FW~tL~  384 (982)
T KOG2022|consen  306 QEEENADASEEEIVTFLAITVSSVENHLPTLIDCAAQGEQSELVIRLVQVLLVLTNFPGQ-YPVEEIVSDRTLIFWYTLQ  384 (982)
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHhcccHHHHHHHhhcchHHHHHHHHHHHHHHhCCCCC-ccHHHHHhHHHHHHHHHHH
Confidence            2344555  7788899999999999999998764      22457999999999999994 6654    57999999999


Q ss_pred             HHhhccchhhhhhhhhhhhhcH-HHHHHHHHHHHHHhccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchH-
Q 002370          359 SYILGLDASIAKNKKHVEDMFF-SVFSALLDALLLRAQVDES-SFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSAT-  435 (930)
Q Consensus       359 ~~l~~~~~~~~~~~~~~~~~~~-~~~~~Ll~~l~~k~~~p~~-~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~-  435 (930)
                      |++..+.+++.   +.....|+ |+|.+|++++++|+.+|.+ .|. .|..|++|.|++||++++|+++++|.++|+.. 
T Consensus       385 dei~~~~~e~~---~~~~~i~~~qIy~qlvei~l~K~~~Ps~e~~~-~W~S~s~e~F~~YR~diSD~~~~~Y~ilgd~ll  460 (982)
T KOG2022|consen  385 DEIMQTINETQ---QIKKQILSQQIYAQLVEILLKKLALPSKEIWL-SWSSDSREQFESYRKDISDLLMSSYSILGDGLL  460 (982)
T ss_pred             HHHHHhhhccC---CcchhHHHHHHHHHHHHHHHHHhcCCCHHHhc-cCCcchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            99987655432   12334454 9999999999999999988 454 69999999999999999999999999999642 


Q ss_pred             -HHHHHHHhhhcCCC-CCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHH
Q 002370          436 -FIQKVFFGSWGSAN-VPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVI  513 (930)
Q Consensus       436 -~l~~~~~~~~~~~~-~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~i  513 (930)
                       ++...++++..... .+.+|++.|+|+|++.++++.+...++    +.+..++...++.+....  ++.+.. |++.+|
T Consensus       461 ~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~----~~i~rl~~~~asik~S~~--n~ql~~-Tss~~i  533 (982)
T KOG2022|consen  461 DFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES----TWIPRLFETSASIKLSAP--NPQLLS-TSSDLI  533 (982)
T ss_pred             HHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh----HHHHHHHHhccccccccC--ChhHHH-HHHHHH
Confidence             44445555544332 456799999999999999999986554    556666655543321100  011334 668999


Q ss_pred             HhhHHHHHhchhchHHHHHHHHHhccccchhHHHHHHHHHHHHHhhcccCCCccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002370          514 GSYSKWISAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVG  593 (930)
Q Consensus       514 g~y~~wl~~~p~~L~~vl~~l~~~l~~p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~l~~~~~~l~~~~l~~~~~~~l~e  593 (930)
                      |.|+.|+..||.||.+.++.++.++++++....|..++++||++|+.+|. |+..+.+..+++.+.....+..++.+++.
T Consensus       534 gs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~s~q~i~tl~tlC~~C~~~L~-py~d~~~a~~~e~l~~~~~~~S~~~klm~  612 (982)
T KOG2022|consen  534 GSLSNWLGEHPMYLNPSLPLLFQGLHNSKESEQAISTLKTLCETCPESLD-PYADQFSAVCYEVLNKSNAKDSDRLKLMK  612 (982)
T ss_pred             HHHHHHHhcCCcccCchHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhCc-hHHHHHHHHHHHHhcccccCchHHHHHHH
Confidence            99999999999999999999999999999888888999999999999996 44444445556666667788999999999


Q ss_pred             HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCC---
Q 002370          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTN---  670 (930)
Q Consensus       594 ai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~---  670 (930)
                      +||+|++.+.+++ +.+|+.++++|++++++.++....+.     ++.   .+. ..-.+.+++++|..+..+.+..   
T Consensus       613 sIGyvls~~~pEe-~~kyl~~lin~il~qle~~l~~~i~~-----~e~---~l~-~~~~l~~iS~LftSL~~~~~~~d~d  682 (982)
T KOG2022|consen  613 SIGYVLSRLKPEE-IPKYLMKLINPILSQLEINLAPGIDD-----QEN---HLR-IAFQLNTISALFTSLINKKDIIDTD  682 (982)
T ss_pred             HHHHHHHhccHHh-HHHHHHHHHHHHHHHHHHhhcCCCCC-----HHH---HHH-HHHHHHHHHHHHhccCCCCcccccc
Confidence            9999999998766 68999999999999999998765431     111   122 2334667778887776433211   


Q ss_pred             C-------CCCchHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHhhhhh-HhhHHHHHHHHHHhhhhhCCc
Q 002370          671 P-------AGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAACRALSLAIQSSGQHF-VTLLPQVLDCLSTNFVSFQNH  742 (930)
Q Consensus       671 ~-------~~~~p~~~~~~~i~~~l~~i~~~~~~~~~~v~e~~c~~~~~~i~~l~~~~-~p~l~~l~~~l~~~~~~~~~~  742 (930)
                      .       -+..|++.++++++|+++.++. +|.++.+++|++|..++++++++++.+ .|++|.++.++.. |... +.
T Consensus       683 ~~~~~~~~~qq~~il~v~~k~i~~~~kv~s-~~~~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r-~~~~-~~  759 (982)
T KOG2022|consen  683 QPEQREEPFQQFPILQVLQKAIPVFEKVLS-MWLGLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVR-FLTS-CL  759 (982)
T ss_pred             chhhhccccccCCHHHHHHHHHHHHHHHHH-HHhcchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHH-hccc-hH
Confidence            0       0123788999999999999999 799999999999999999999998887 8999999999987 7654 66


Q ss_pred             chHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchH
Q 002370          743 ECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLE  822 (930)
Q Consensus       743 ~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~  822 (930)
                      ..-+.+..+++..+..++.+.+.+...+..+.+.. +..+.+ ..+.++||+.+.+++++..++++.|+.+.++...+-.
T Consensus       760 a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~s-l~lf~~-~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts  837 (982)
T KOG2022|consen  760 AVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQS-LLLFEQ-HPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTS  837 (982)
T ss_pred             HHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH-HHHHhc-cCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHH
Confidence            66788888888888777778888888776666665 555555 3479999999999999999999999999986534444


Q ss_pred             HHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHHHHHHHHHHhcccccccch
Q 002370          823 VSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEGLVSNVVYALLGVSAMSRI  902 (930)
Q Consensus       823 ~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~lv~~ll~~~~g~~prs~~  902 (930)
                      .++.+++..++.+|+..+|++++||+.|++.+++            +....+++++.+.|+.|+.++|+|+||.+|||.+
T Consensus       838 ~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s------------~~~~tv~~~V~~~G~~Li~~im~~vgg~~~RS~l  905 (982)
T KOG2022|consen  838 LILICAFILLNSPEPTTIRAASQFLTALATYATS------------HDLVTVTSVVAEIGPILIYAIMRGVGGEASRSTL  905 (982)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc------------chhHHHHHHHHhcchHHHHHHHHHhcCcCccchh
Confidence            5666999999999999999999999999987553            2357899999999999999999999999999999


Q ss_pred             hhhhHHHHHHHhhcCC-CCcccc
Q 002370          903 HSGGSCFQKKRSQVCN-NPATIG  924 (930)
Q Consensus       903 ~~~~~~L~~l~~~~~~-~~~~~~  924 (930)
                      |.++|+|++|+++|+. --+|+-
T Consensus       906 d~~aDIL~al~~k~~se~r~wl~  928 (982)
T KOG2022|consen  906 DALADILLALNAKFFSETRTWLK  928 (982)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH
Confidence            9999999999999976 444443

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope	Back alignment and domain information

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane	Back alignment and domain information

>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []	Back alignment and domain information

>PF08167 RIX1: rRNA processing/ribosome biogenesis	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>PRK09687 putative lyase; Provisional	Back alignment and domain information

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)	Back alignment and domain information

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells	Back alignment and domain information

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []	Back alignment and domain information

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]	Back alignment and domain information

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	Back alignment and domain information

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins	Back alignment and domain information

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]	Back alignment and domain information

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B	Back alignment and domain information

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		930
2xwu_B		963	Crystal Structure Of Importin 13 - Ubc9 Complex Len		3e-18
2x19_B		963	Crystal Structure Of Importin13 - Rangtp Complex Le		2e-14
2x1g_F		971	Crystal Structure Of Importin13 - Mago-Y14 Complex		4e-09

>pdb|2XWU|B Chain B, Crystal Structure Of Importin 13 - Ubc9 Complex Length = 963

Back alignment and structure

Iteration: 1

Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 165/791 (20%), Positives = 324/791 (40%), Gaps = 89/791 (11%) Query: 9 VAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQ 68 V +A+H L +D N+ A +WL+Q Q + AW + +L D+ E+++F A Sbjct: 26 VEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVP-----EIQYFGAS 80 Query: 69 ILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHGKP 128 L KI + + ++L L RF+SG +LT++C+AL++L L + P Sbjct: 81 ALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWP 140 Query: 129 -----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELL 183 + +LF + + +A+LE+LTVLPEE S+ R+ E Sbjct: 141 CAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYR-KGLVRTSLAVECG 199 Query: 184 SHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLL 243 + P++ + L Q S +K+L+C SWV+ E+ A L+ Sbjct: 200 AVFPLLEQLLQQPSSPSC----------VRQKVLKCFSSWVQ----LEVPLQDCEA--LI 243 Query: 244 NFVFNSLQVQSSFDVAIEVLVELVGRHEG--LPQALLCRVPFX--XXXXXXXXXTDGDEK 299 F +LQ FD ++E +V + + + LL +P +GD + Sbjct: 244 QAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGDME 303 Query: 300 VIGGLACLMSEIGQAAPSLI---VEASPEALALADALLSCVAFPSE---DWEIADSTLQF 353 G+ + +G+ + VE LAL + ++ C P + + TL F Sbjct: 304 TSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTF 363 Query: 354 WSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGL 413 W TL IL + A+ + + ++ V+ L+D LL +AQ D + Sbjct: 364 WYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQF 420 Query: 414 VQFRMNLVELLVDICQLLRSATFIQKVF--FGS-WGSANVPIPWKEVETKLFALNVVSEV 470 +R+++ + L+ + ++L A + ++ G S+ P W+ E L+ ++E Sbjct: 421 RIYRVDISDTLMYVYEML-GAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET 479 Query: 471 VLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYR------SLAD----VIGSYSKWI 520 + + S+ + G + ++ R LAD IG+ S+W+ Sbjct: 480 I-------------------DVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 Query: 521 SAFQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEK 580 + +L + + S + S L+KIC + + P I+ + L K Sbjct: 521 ADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMK 579 Query: 581 RHLPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLID----GDNNHSLI 636 + ++ A+ +L ++ +E+ NL + L+S + + KL + N +++ Sbjct: 580 QIHKTSQCMWLMQALGFLLSALQVEEILKNLHS-LISPYIQQLEKLAEEIPNPSNKLAIV 638 Query: 637 HNPATYTQILSSATRGLY---RMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFR 693 H + + ++ + G LPV P G +P+ +L+ + +++K+ Sbjct: 639 HILGLLSNLFTTLDISHHEDDHEGPELRKLPV-----PQGPNPVVVVLQQVFQLIQKVL- 692 Query: 694 SEHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVI 753 S+ + + + A C ++++ F ++PQ+ + L + + T +V Sbjct: 693 SKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLV- 751 Query: 754 EEFGHKDEYGP 764 F H+ + P Sbjct: 752 HIFAHEPAHFP 762

PyMOL of 2xwu

>pdb|2X19|B Chain B, Crystal Structure Of Importin13 - Rangtp Complex Length = 963

Back alignment and structure

>pdb|2X1G|F Chain F, Crystal Structure Of Importin13 - Mago-Y14 Complex Length = 971

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		930
2x19_B		963	Importin-13; nuclear transport, protein transport;	1e-102
2x1g_F		971	Cadmus; transport protein, developmental protein,	3e-82
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	2e-55
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	6e-53
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	6e-48
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	8e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-14
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	1e-06
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	6e-06

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963	Back alignment and structure

 Score =  339 bits (869), Expect = e-102
 Identities = 176/924 (19%), Positives = 357/924 (38%), Gaps = 78/924 (8%)

Query: 1   MQMDLQIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDF 60
           +   ++  V +A+H L +D    N+  A +WL+Q Q +  AW  +  +L  D+       
Sbjct: 19  LDFTVE-NVEKALHQLYYDPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDK-----VP 72

Query: 61  EVEFFAAQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALIL 120
           E+++F A  L  KI      + +   ++L   L     RF+SG   +LT++C+AL++L L
Sbjct: 73  EIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKIVLTRLCVALASLAL 132

Query: 121 RAVEHGKP-----IEKLFYSLQNLQSQDNGNMAVLEMLTVLPEEVIDSQASDCNISSAHR 175
             +    P     + +LF +  +        +A+LE+LTVLPEE   S+     +    +
Sbjct: 133 SMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSR-----LPQYRK 187

Query: 176 SQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQG 235
                 L      V   L Q   +      P       +K+L+C  SWV+     +    
Sbjct: 188 GLVRTSLAVECGAVFPLLEQLLQQ------PSSPSCVRQKVLKCFSSWVQLEVPLQDC-- 239

Query: 236 SLAAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGL-----PQALLCRVPFLKELLLL 290
                 L+   F +LQ    FD ++E +V  + + +          L+  V  L+E  L 
Sbjct: 240 ----EALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQE-QLR 294

Query: 291 PALTDGDEKVIGGLACLMSEIGQAAPSLIV---EASPEALALADALLSCVAFPS---EDW 344
            A+ +GD +   G+  +   +G+     ++   E     LAL + ++ C   P     + 
Sbjct: 295 QAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNE 354

Query: 345 EIADSTLQFWSTLASYILGLDASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDD 404
             +  TL FW TL   IL  +   A+ +   + ++  V+  L+D LL +AQ         
Sbjct: 355 TTSSLTLTFWYTLQDDILSFE---AEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF 411

Query: 405 GMVDLPDGLVQFRMNLVELLVDICQLLRSATF--IQKVFFGSWGSANVPIPWKEVETKLF 462
              D  +    +R+++ + L+ + ++L +     +         S+  P  W+  E  L+
Sbjct: 412 WSSDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLY 471

Query: 463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISA 522
               ++E +          V+  L+ ++       ++     +  ++   IG+ S+W++ 
Sbjct: 472 GFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQ-----LADTVMFTIGALSEWLAD 522

Query: 523 FQTNARPLLLFLAAGISEAVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRH 582
                  +L  +   +     S +  S L+KIC +    +  P    I+    + L K+ 
Sbjct: 523 HPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDL-PPYAANIVAVSQDVLMKQI 581

Query: 583 LPLEDEEEVVGAISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATY 642
                   ++ A+  +L ++  +E+  NL   L+S   + + KL +   N S        
Sbjct: 582 HKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHI 640

Query: 643 TQILSSATRGLYRMGTVFSHLPVPLPTN--PAGDDPIFALLRVFWPMLEKLFRSEHMENG 700
             +LS+    L        H    L     P G +P+  +L+  + +++K+  S+ + + 
Sbjct: 641 LGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVL-SKWLNDA 699

Query: 701 NLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNHECYIRTASVVIEEFGHKD 760
            +  A C     ++++    F  ++PQ+ + L   + +       +     ++  F H+ 
Sbjct: 700 QVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIP-QASALDLTRQLVHIFAHEP 758

Query: 761 EYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGAL 820
            + P     F   +                 PD+V+++    +  ++      L     +
Sbjct: 759 AHFPPIEALFLLVTSVTLT---LFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLDV 815

Query: 821 LEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISH 880
             V FQ A +           A+  + +  L  C                     +V+  
Sbjct: 816 KAV-FQCAVLALKFPEAPTVKASCGFFTELLPRC--------------GEVESVGKVVQE 860

Query: 881 SGEGLVSNVVYALLGVSAMSRIHS 904
            G  L+  V+ A+ G ++ S +  
Sbjct: 861 DGRMLLIAVLEAIGGQASRSLMDC 884

PyMOL of 2x19

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		930
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	100.0
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	100.0
2x1g_F		971	Cadmus; transport protein, developmental protein,	100.0
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	100.0
2x19_B		963	Importin-13; nuclear transport, protein transport;	100.0
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	100.0
3a6p_A		1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	100.0
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	100.0
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	100.0
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.96
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	99.89
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	99.62
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.58
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	99.39
1qgr_A		876	Protein (importin beta subunit); transport recepto	99.36
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	99.09
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.82
1u6g_C		1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.81
1b3u_A		588	Protein (protein phosphatase PP2A); scaffold prote	98.77
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	97.78
2x1g_F		971	Cadmus; transport protein, developmental protein,	97.63
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	97.51
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.44
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	96.95
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	96.95
2x19_B		963	Importin-13; nuclear transport, protein transport;	96.8
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	96.64
2vgl_B		591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	96.24
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	96.15
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	95.91
1wa5_C		960	Importin alpha RE-exporter; nuclear transport/comp	95.89
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	95.77
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.31
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	95.3
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	94.63
3gjx_A		1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	94.61
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	94.47
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	94.34
3m1i_C		1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	94.31
2qk2_A		242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	93.73
1oyz_A		280	Hypothetical protein YIBA; structural genomics, PS	93.63
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	93.36
3ibv_A		980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.33
1w63_A		618	Adapter-related protein complex 1 gamma 1 subunit;	91.82
2qk1_A		249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	90.97
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	90.92
2vgl_A		621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	90.62
1w9c_A		321	CRM1 protein, exportin 1; nuclear protein, nuclear	88.89
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	88.18
3ul1_B		510	Importin subunit alpha-2; arm repeat, armadillo re	85.89
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	85.0
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	84.87
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	80.69

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

Probab=100.00  E-value=1.2e-83  Score=793.70  Aligned_cols=834  Identities=14%  Similarity=0.150  Sum_probs=651.1

Q ss_pred             HHHHHHHHHHhccCCChHHHHHHHHHHHHhhcChHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcCCCChHH
Q 002370            6 QIKVAQAVHVLNHDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGYYLQSAA   85 (930)
Q Consensus         6 ~~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~~l~~e~   85 (930)
                      .+.+++||+++|++++ +.|++|++||++||++|++|.+|..+|+.+     .+.++|||||++|++||+++|+.+|+++
T Consensus        15 v~~Le~av~~ly~p~~-~~r~~A~~~L~~~q~sp~aw~~~~~iL~~s-----~~~~vR~faa~~Lk~~I~~~W~~L~~e~   88 (1023)
T 4hat_C           15 IALLDQVVSTFYQGSG-VQQKQAQEILTKFQDNPDAWQKADQILQFS-----TNPQSKFIALSILDKLITRKWKLLPNDH   88 (1023)
T ss_dssp             HHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHCTTGGGGHHHHHHHC-----CCHHHHHHHHHHHHHHHHHHGGGSCHHH
T ss_pred             HHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHcCccHHHHHHHHhcCC-----CCHHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence            3589999999997655 489999999999999999999999999764     3579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHhc--ccCchHHHHHHHhhcccCCCchhHHHHHHHhhhh
Q 002370           86 KDALLNALLVAAKRFSSG------PPQLLTQICLALSALILRAV--EHGKPIEKLFYSLQNLQSQDNGNMAVLEMLTVLP  157 (930)
Q Consensus        86 ~~~lr~~Ll~~l~~~~~~------~~~v~~kL~~~La~l~~~~~--~W~~~i~~li~~~~~~~~~~~~~~~~L~iL~~l~  157 (930)
                      +..||+.|++++.++..+      ++++++|+|.+++.++++.+  .||++++++++.+++   ++..+..+|.+|+.|+
T Consensus        89 ~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~Wp~~l~dL~~~l~~---~~~~~~~~L~iL~~L~  165 (1023)
T 4hat_C           89 RIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSSSS---SVNVCENNMIVLKLLS  165 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTTT---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhhchHHHHHHHHHhcC---CHHHHHHHHHHHHHHH
Confidence            999999999999876533      47899999999999999984  699999999999976   3456889999999999


Q ss_pred             cccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccccccCcchh
Q 002370          158 EEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSL  237 (930)
Q Consensus       158 EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~~~~~~~~i  237 (930)
                      ||+.+....  .++..||..+++.|...++.|++++.++++...       +.++...+|+|+.+|+.     |+|.+.+
T Consensus       166 EEV~~~~~~--~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~-------~~~l~~~~L~~l~s~l~-----WI~i~~i  231 (1023)
T 4hat_C          166 EEVFDFSAE--QMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGA-------SSSLIVATLESLLRYLH-----WIPYRYI  231 (1023)
T ss_dssp             HHHHTSCTT--TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-------SCHHHHHHHHHHHHHTT-----TSCTHHH
T ss_pred             HHHHHhhhc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHH-----hCCHHHh
Confidence            999764322  267889999999999999999999999998642       34678899999999999     8999998


Q ss_pred             cccchHHHHH-HhcCCCCcHHHHHHHHHHHHhccC--C---hhHH---HHhh------------hhhhHHhhhchhhccC
Q 002370          238 AAHPLLNFVF-NSLQVQSSFDVAIEVLVELVGRHE--G---LPQA---LLCR------------VPFLKELLLLPALTDG  296 (930)
Q Consensus       238 ~~~~ll~~l~-~~L~~~~~~~~a~~~l~ei~~~~~--~---~~~~---l~~~------------~~~l~~~~~~~~~~~~  296 (930)
                      .++++++.+| +.|.+++++++|++||++++++..  +   +.+.   +++.            ...+.+.+.  ...++
T Consensus       232 ~~~~ll~~l~~~~L~~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~--~~~~~  309 (1023)
T 4hat_C          232 YETNILELLSTKFMTSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYA--NANGN  309 (1023)
T ss_dssp             HSSSHHHHHHTHHHHSHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHH--HTCTT
T ss_pred             cchhHHHHHHHHHcCCHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHh--ccccc
Confidence            8999999999 999999999999999999998531  2   3321   2222            223444442  23456


Q ss_pred             cHhHHhhHHHHHHHHHHhhhHHHHhcCh---hHHHHHHHHHhcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhhhhh
Q 002370          297 DEKVIGGLACLMSEIGQAAPSLIVEASP---EALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAKNKK  373 (930)
Q Consensus       297 d~d~~~~l~~l~~~~~e~~~~~l~~~~~---~~~~ll~~ll~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~~~~  373 (930)
                      |.++.+++|++|+++|++|...+.+++.   .....+++|+.|++++  |++++++|++||+.|++++++.        +
T Consensus       310 D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~--d~ei~~~tl~FW~~L~~~l~~e--------~  379 (1023)
T 4hat_C          310 DQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIE--ERELFKTTLDYWHNLVADLFYE--------P  379 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTTS--------T
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHhc--------h
Confidence            7889999999999999999998875522   2234577999999997  8999999999999999987642        1


Q ss_pred             hhhhhcHHHHHHHHHHHHHHhccCCCCC-----CCCC------CCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Q 002370          374 HVEDMFFSVFSALLDALLLRAQVDESSF-----NDDG------MVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFF  442 (930)
Q Consensus       374 ~~~~~~~~~~~~Ll~~l~~k~~~p~~~~-----~~~~------~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~  442 (930)
                      .....|+|+|.+|+.++++||+||++..     .++|      |.|+.+.|+.||    |+|.+++.+.|+ .++..+++
T Consensus       380 ~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~R----d~L~~l~~l~~~-~~~~~~~~  454 (1023)
T 4hat_C          380 LKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSER----EVLVYLTHLNVI-DTEEIMIS  454 (1023)
T ss_dssp             TTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHH----HHHHHHHHHCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHH----HHHHHHhccCHH-HHHHHHHH
Confidence            3457899999999999999999998421     1133      445566777777    899999998876 46666665


Q ss_pred             hhhcC-CCCCCCchhhhHHHHHHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 002370          443 GSWGS-ANVPIPWKEVETKLFALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWIS  521 (930)
Q Consensus       443 ~~~~~-~~~~~~W~~~Ea~L~~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~  521 (930)
                      .+... ..++++|+.+||++||+|+|++++.++.....++.+++.+..++++...+. ..+.++. |+|+++|+|++|+.
T Consensus       455 ~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d-~k~~v~~-t~~~~lGry~~wl~  532 (1023)
T 4hat_C          455 KLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKD-NKAVVAS-DIMYVVGQYPRFLK  532 (1023)
T ss_dssp             HHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHH-HHHHHHH-HHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCc-chHHHHH-HHHHHHHHHHHHHh
Confidence            54321 112478999999999999999998754221236777777777776422111 0112444 55799999999999


Q ss_pred             hchhchHHHHHHHHHhccc--cchhHHHHHHHHHHHHHhhcccCC------CccHHHHHHHHHHHHhcCCChhhHHHHHH
Q 002370          522 AFQTNARPLLLFLAAGISE--AVSSNACASALRKICEDASALIDE------PSNLEILMWIGEALEKRHLPLEDEEEVVG  593 (930)
Q Consensus       522 ~~p~~L~~vl~~l~~~l~~--p~v~~~Aa~al~~lc~~c~~~l~~------p~~~~~l~~~~~~l~~~~l~~~~~~~l~e  593 (930)
                      .||++|+++++++++++++  |+++.+||.||++||++|+.++..      +++.+.+.+.+.... ..++.+++..+||
T Consensus       533 ~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~-~~l~~~~~~~lye  611 (1023)
T 4hat_C          533 AHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTT-ADLQPQQVHTFYK  611 (1023)
T ss_dssp             HCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHH-TTSCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHH-HhCCHHHHHHHHH
Confidence            9999999999999999964  679999999999999999988742      125555544444332 3678999999999


Q ss_pred             HHHHHHccCCchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchhhH--HHHHHhHHHHHhhhcccccccccCCCCC
Q 002370          594 AISLILGSVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYT--QILSSATRGLYRMGTVFSHLPVPLPTNP  671 (930)
Q Consensus       594 ai~~vi~~~p~~~~~~~~l~~ll~p~~~~l~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~l~~l~~i~~~l~~~~~~~~  671 (930)
                      |+|.+++++|.++.+..+++.++.|+.+.|+++.++..     .++..+.  +..+.....+++++++.+.+.       
T Consensus       612 ai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~-----~~~~~~~d~~~~~~l~~il~~~~~v~~~lg-------  679 (1023)
T 4hat_C          612 ACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQST-----ANPTLLLDSETVKIIANIIKTNVAVCTSMG-------  679 (1023)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHH-----HCTTGGGCHHHHHHHHHHHHHHHHHHHHHG-------
T ss_pred             HHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHh-----cCchhhcCHHHHHHHHHHHHHHHHHHHHhc-------
Confidence            99999999999887889999999999999999997531     1222221  112233344444444444432       


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhhhcc--------chHH-----HHHHHHHHHHHHHHhhh-----h------hHhhHHH
Q 002370          672 AGDDPIFALLRVFWPMLEKLFRSEHME--------NGNL-----STAACRALSLAIQSSGQ-----H------FVTLLPQ  727 (930)
Q Consensus       672 ~~~~p~~~~~~~i~~~l~~i~~~~~~~--------~~~v-----~e~~c~~~~~~i~~l~~-----~------~~p~l~~  727 (930)
                         +++.+.++.+||.+..+++ .+.+        ++.+     ..+.|+++|+.+..+-.     .      ...++|+
T Consensus       680 ---~~f~~~~~~i~~~~l~~y~-~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~~~  755 (1023)
T 4hat_C          680 ---ADFYPQLGHIYYNMLQLYR-AVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEP  755 (1023)
T ss_dssp             ---GGGHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhHHH
Confidence               5677888889998888776 3422        1111     23677888776544211     1      3458999


Q ss_pred             HHHHHHHhhhhhC---CcchHHHHHHHHHHHhcCCCCccchHHHHHHHHhhhHHHHHhhcCCCCCCCCchHHHHHHHHHH
Q 002370          728 VLDCLSTNFVSFQ---NHECYIRTASVVIEEFGHKDEYGPLFVTTFERFSQAASVRALNSSYICDQEPDLVEAYTNFAST  804 (930)
Q Consensus       728 l~~~l~~~~~~~~---~~~~~L~l~~~li~~fg~~~~~~~~l~~l~~~l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~  804 (930)
                      +++.++..|..+.   +++++|++++++|+++|+  .+.+.+..+++.+.++| +.+++  .++.++||++.+||+|+.+
T Consensus       756 l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~--~~~~~~~~il~~vf~~T-l~mi~--~~~~~~Pe~r~~ff~ll~~  830 (1023)
T 4hat_C          756 LLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGH--MIPQGVILILQSVFECT-LDMIN--KDFTEYPEHRVEFYKLLKV  830 (1023)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGG--GCHHHHHHHHHHHHHHH-HHHHS--SCSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHH-HHHHh--cccccChHHHHHHHHHHHH
Confidence            9999999998753   358999999999999996  46778888999999998 88888  4899999999999999999


Q ss_pred             HHhhhhHHHHhhchhchHHHHHHHHHhhccCchhHHHHHHHHHHHHHhhhhhhccCCCCCCCCccHHHHHHHHHHhhhHH
Q 002370          805 FVRTSRKEVLAASGALLEVSFQKAAICCTAMHRGAALAAMSYLSCFLEECLASLLGYTTSIPEGSFNAMAIQVISHSGEG  884 (930)
Q Consensus       805 ~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~e~~~~~a~~~fl~~li~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~  884 (930)
                      ++++||..|+..+++.+..+++++++|++++||++..++++|+.+++......    ++       .+..+++..+++..
T Consensus       831 ~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~----~~-------~~~~~~f~~~~~~~  899 (1023)
T 4hat_C          831 INEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERM----GN-------VPFANEFHKNYFFI  899 (1023)
T ss_dssp             HHHHCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH----CS-------SHHHHHHHHHHHHH
T ss_pred             HHHHChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhc----CC-------hHHHHHHHHHHHHH
Confidence            99999999999876789999999999999999999999999999999876642    11       14566777888888


Q ss_pred             HHHHHHHHhcccccccchhhhhHHHHHHHh
Q 002370          885 LVSNVVYALLGVSAMSRIHSGGSCFQKKRS  914 (930)
Q Consensus       885 lv~~ll~~~~g~~prs~~~~~~~~L~~l~~  914 (930)
                      ++..++.-+....=.+....-+.+|+.+..
T Consensus       900 ~~~~~~~v~td~~h~~~f~~~~~~l~~l~~  929 (1023)
T 4hat_C          900 FVSETFFVLTDSDHKSGFSKQALLLMKLIS  929 (1023)
T ss_dssp             HHHHHHHHHHSSSCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchhhhhHHHHHHHHHHHHH
Confidence            877777776655555555555555555444

PyMOL of 4hat

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A	Back alignment and structure

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B	Back alignment and structure

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}	Back alignment and structure

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*	Back alignment and structure

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1	Back alignment and structure

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A	Back alignment and structure

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		930
d1qbkb_		888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	5e-08
d2bpta1		861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	4e-06

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 5e-08
 Identities = 91/749 (12%), Positives = 192/749 (25%), Gaps = 66/749 (8%)

Query: 9   VAQAVHVLN--HDTESCNRVAANQWLVQFQQTDAAWEIATSILTSDRQSFLTDFEVEFFA 66
           + Q + +L      ++  +    Q L Q  Q          +LT  +     D      +
Sbjct: 10  LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSE---DEPTRSLS 66

Query: 67  AQILKRKIQNEGYYLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRAVEHG 126
             ILK  ++       +   D + +  L          P +   + + ++  I    E  
Sbjct: 67  GLILKNNVKAHFQNFPNGVTDFIKSECLNN---IGDSSPLIRATVGILITT-IASKGELQ 122

Query: 127 KPIEKLFYSLQNLQSQD-NGNMAVLEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSH 185
              + L      L S+D N        L  + E+  +   SD         +    ++  
Sbjct: 123 NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSD------VLDRPLNIMI-- 174

Query: 186 TPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCFTEISQGSLAAHPLLNF 245
            P  ++F    S K                 +R              +Q  +        
Sbjct: 175 -PKFLQFFKHSSPK-----------------IRSHAVACVNQFIISRTQALMLHIDSFTE 216

Query: 246 VFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLA 305
              +L      +V   V   LV   E     LL  +  + E  +L    D DE V     
Sbjct: 217 NLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVE-YMLQRTQDQDENVALEAC 275

Query: 306 CLMSEIGQAAPSLIVEASPEALALADALLSCVAFPSEDWEIADSTLQFWSTLASYILGLD 365
                + +      V        L   L++ + +   D  +    ++   T+      + 
Sbjct: 276 EFWLTLAEQPICKDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIR 334

Query: 366 ASIAKNKKHVEDMFFSVFSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLV 425
               +++   +           D        D  S  +          V   +   ELL 
Sbjct: 335 PRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLP 394

Query: 426 DICQLL---RSATFIQKVFFGSWGSANVPIPWKEVETKLFALNVVSEVVLQEGQAFD--F 480
            I  LL              G      +     +         +   +     +      
Sbjct: 395 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRS 454

Query: 481 SVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAFQTNARPLLLFLAAGISE 540
                L        S+    ++  +   L   I   +K +     +A   L   A     
Sbjct: 455 ITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEA----- 509

Query: 541 AVSSNACASALRKICEDASALIDEPSNLEILMWIGEALEKRHLPLEDEEEVVGAISLILG 600
                     L  I +       +  + + L+ + +A+      +         I +++ 
Sbjct: 510 ---CTELVPYLAYILDTLVFAFSKYQH-KNLLILYDAIGTLADSVGHHLNKPEYIQMLMP 565

Query: 601 SVSNKELKNNLLARLLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYR----- 655
            +  K        + L    E +  +     +  L +    Y + ++   + L +     
Sbjct: 566 PLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNN 625

Query: 656 ---------MGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRSEHMENGNLSTAA 706
                               L     G       L     +L  +++    +   +  ++
Sbjct: 626 AQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSS 685

Query: 707 CRALSLAIQSSGQHFVTLLPQVLDCLSTN 735
              L    ++  QH    +   +  L TN
Sbjct: 686 FALLGDLTKACFQHVKPCIADFMPILGTN 714

PyMOL of d1qbkb_

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		930
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.96
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.96
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.91
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.15
d2bpta1		861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.1
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	99.06
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.69
d1qbkb_		888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.64
d1qgra_		876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1b3ua_		588	Constant regulatory domain of protein phosphatase	98.45
d1u6gc_		1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.18
d1ibrb_		458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.92
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	96.98
d1wa5c_		959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.77
d2vglb_		579	Adaptin beta subunit N-terminal fragment {Human (H	93.33
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	92.46
d1w9ca_		321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	88.04
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	86.59
d1oyza_		276	Hypothetical protein YibA {Escherichia coli [TaxId	83.42
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	81.33

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.5e-24  Score=261.43  Aligned_cols=715  Identities=12%  Similarity=0.112  Sum_probs=434.7

Q ss_pred             HHHHHHHHHhccCCChHHHHHHHHHHHHhhcC--hHHHHHHHHhhccCCCCCCccchhHHhhhHHhHHHhccCcC-----
Q 002370            7 IKVAQAVHVLNHDTESCNRVAANQWLVQFQQT--DAAWEIATSILTSDRQSFLTDFEVEFFAAQILKRKIQNEGY-----   79 (930)
Q Consensus         7 ~~v~~av~~ly~~~d~~~~~~A~~~L~~fq~s--~~aW~~~~~LL~~~~~~~~~~~~v~ffaA~tL~~ki~~~~~-----   79 (930)
                      +++.++++..+.++|++.|++|+++|++++++  |+.+..+.+++.+.+    .+.++|++|+.+||+.+.++|.     
T Consensus         4 ~~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~~~~~~~l~~il~~~~----~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           4 AEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDEN----TKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCTT----SCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            48888888755578999999999999999987  777888888887643    4579999999999999998874     


Q ss_pred             -------CCChHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-c--ccCchHHHHHHHhhcccCCCchhHHH
Q 002370           80 -------YLQSAAKDALLNALLVAAKRFSSGPPQLLTQICLALSALILRA-V--EHGKPIEKLFYSLQNLQSQDNGNMAV  149 (930)
Q Consensus        80 -------~l~~e~~~~lr~~Ll~~l~~~~~~~~~v~~kL~~~La~l~~~~-~--~W~~~i~~li~~~~~~~~~~~~~~~~  149 (930)
                             .++++.+..+|+.+++.+.   ..++.||++++.+++.++... +  .||+.++.+++.+.+.. +.......
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~---~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~-~~~~~~~a  155 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALV---SIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQ-PENVKRAS  155 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTS-CHHHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCC-cHHHHHHH
Confidence                   5899999999999998875   457899999999999998764 3  59999999999887632 22234578


Q ss_pred             HHHHhhhhcccccccccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHHhhccCCCCCcchhhhHHHHHHHHHHHHHhccc
Q 002370          150 LEMLTVLPEEVIDSQASDCNISSAHRSQYGQELLSHTPMVVEFLMQQSDKRFDGGVPVQLHDRNRKILRCLLSWVRAGCF  229 (930)
Q Consensus       150 L~iL~~l~EE~~~~~~~~~~l~~~~r~~~~~~l~~~~~~v~~~l~~~l~~~~~~~~~~~~~~~~~~~l~c~~sWi~~~~~  229 (930)
                      +.+|..+.|+.....      ..         +......++..+.+.+....      .+..++..+++|+.+++.+.  
T Consensus       156 l~~l~~i~e~~~~~~------~~---------~~~~~~~il~~i~~~~~~~~------~~~~v~~~a~~~l~~~~~~~--  212 (861)
T d2bpta1         156 LLALGYMCESADPQS------QA---------LVSSSNNILIAIVQGAQSTE------TSKAVRLAALNALADSLIFI--  212 (861)
T ss_dssp             HHHHHHHHHTSSTTS------ST---------TGGGHHHHHHHHHHHHSTTC------CCHHHHHHHHHHHHHHGGGC--
T ss_pred             HHHHHHHHHHhhHHH------HH---------HHHHHHHHHHHHHHHHhccc------CCHHHHHHHHHHHHHHHHHH--
Confidence            899999998874211      10         11112222222222222211      34578899999999998753  


Q ss_pred             cccCcchh---cccchHHHHHHhcCCCCcHHHHHHHHHHHHhccCChhHHHHhhhhhhHHhhhchhhccCcHhHHhhHHH
Q 002370          230 TEISQGSL---AAHPLLNFVFNSLQVQSSFDVAIEVLVELVGRHEGLPQALLCRVPFLKELLLLPALTDGDEKVIGGLAC  306 (930)
Q Consensus       230 ~~~~~~~i---~~~~ll~~l~~~L~~~~~~~~a~~~l~ei~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~d~~~~l~~  306 (930)
                         +....   ....+++.++.                                           ..++++.+.....+.
T Consensus       213 ---~~~~~~~~~~~~~~~~l~~-------------------------------------------~~~~~~~~~~~~~~~  246 (861)
T d2bpta1         213 ---KNNMEREGERNYLMQVVCE-------------------------------------------ATQAEDIEVQAAAFG  246 (861)
T ss_dssp             ---HHHHTSHHHHHHHHHHHHH-------------------------------------------HHTCSCHHHHHHHHH
T ss_pred             ---hHhHHhhhhhhHHHHhHHH-------------------------------------------HhcCCCHHHHHHHHH
Confidence               11110   00111122222                                           233445555555555


Q ss_pred             HHHHHHHhhhHHHHhcChhHHHHHHHHH-hcccCCCCCchhhhhcHHHHHHHHHHhhccchhhhh---hhhhhhhhcHHH
Q 002370          307 LMSEIGQAAPSLIVEASPEALALADALL-SCVAFPSEDWEIADSTLQFWSTLASYILGLDASIAK---NKKHVEDMFFSV  382 (930)
Q Consensus       307 l~~~~~e~~~~~l~~~~~~~~~ll~~ll-~~~~~p~~d~~v~~~~~~fW~~l~~~l~~~~~~~~~---~~~~~~~~~~~~  382 (930)
                      .+..+++.+...+..   ....++..++ ......  +.++...+++||..+.+...+.......   ..........+.
T Consensus       247 ~l~~i~~~~~~~~~~---~l~~~l~~l~~~~~~~~--~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (861)
T d2bpta1         247 CLCKIMSKYYTFMKP---YMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSS  321 (861)
T ss_dssp             HHHHHHHHHGGGCHH---HHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            555555554433321   1122232222 233333  6778899999999987754322111000   000111233556


Q ss_pred             HHHHHHHHHHHhccCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCchHHHHHHHHhhhcCCCCCCCchhhhHHHH
Q 002370          383 FSALLDALLLRAQVDESSFNDDGMVDLPDGLVQFRMNLVELLVDICQLLRSATFIQKVFFGSWGSANVPIPWKEVETKLF  462 (930)
Q Consensus       383 ~~~Ll~~l~~k~~~p~~~~~~~~~~d~~d~f~~~R~~~~d~l~~~~~~l~~~~~l~~~~~~~~~~~~~~~~W~~~Ea~L~  462 (930)
                      +..+++.+..-+..+.++       +++++ ...|.....++...+..+|.. ++......... ...+.+|...+++++
T Consensus       322 l~~i~~~l~~~l~~~~~~-------~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~a~~  391 (861)
T d2bpta1         322 IKDVVPNLLNLLTRQNED-------PEDDD-WNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQ-NITADNWRNREAAVM  391 (861)
T ss_dssp             HHHHHHHHHHHTTCCCCC--------CCCC-CHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHH-HTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcc-------ccchh-HHHHHHHHHHHHHHHhhcchh-hhhhhcchhhh-hhhhHHHHHHHHHHH
Confidence            667777776666544321       11122 234455556777776666654 34333332211 113567999999999


Q ss_pred             HHHhhhhccccCCCccchhHHHHHHHHhccCchhhhhhHHHHHHHHHHHHHHhhHHHHHhc---hhchHHHHHHHHHhcc
Q 002370          463 ALNVVSEVVLQEGQAFDFSVIMQLVAVLSASRSEELKGFMHIVYRSLADVIGSYSKWISAF---QTNARPLLLFLAAGIS  539 (930)
Q Consensus       463 ~l~~iae~~~~~~~~~~l~~i~~~l~~l~~~~~~~~~~~~~v~~~t~~~~ig~y~~wl~~~---p~~L~~vl~~l~~~l~  539 (930)
                      +++++++.+........++.+++.+.....+++..      +|.++ ++++|++++++...   +++++.+++.++..+.
T Consensus       392 ~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~------vr~~a-~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~  464 (861)
T d2bpta1         392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQ------VKETT-AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQ  464 (861)
T ss_dssp             HHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHH------HHHHH-HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchh------hhhHH-HHHHHHHHHHhchhhhhHHhhhhhhHHHHhccc
Confidence            99999987753221112345555555555555432      56655 69999999998753   4678999999988776


Q ss_pred             c-cchhHHHHHHHHHHHHHhhcccCCCccHHH----HHHHHHHHHhcCCChhhHHHHHHHHHHHHccCCchHHHHHHHHH
Q 002370          540 E-AVSSNACASALRKICEDASALIDEPSNLEI----LMWIGEALEKRHLPLEDEEEVVGAISLILGSVSNKELKNNLLAR  614 (930)
Q Consensus       540 ~-p~v~~~Aa~al~~lc~~c~~~l~~p~~~~~----l~~~~~~l~~~~l~~~~~~~l~eai~~vi~~~p~~~~~~~~l~~  614 (930)
                      + +.+...|+.++..++..+......+ ..+.    +..+.............+...+++++.++...+..-  ..++..
T Consensus       465 ~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~--~~~~~~  541 (861)
T d2bpta1         465 DHPKVATNCSWTIINLVEQLAEATPSP-IYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTV--AETSAS  541 (861)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSSSSSCG-GGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGG--HHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHHhhhcccch-hhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHH--HHHHHH
Confidence            4 6688999999999999888755421 2222    233333323334455678888999999998887653  456677


Q ss_pred             HHHHHHHHHHhhhhccCCCCCCCCchhhHHHHHHhHHHHHhhhcccccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 002370          615 LLSSSYEAIGKLIDGDNNHSLIHNPATYTQILSSATRGLYRMGTVFSHLPVPLPTNPAGDDPIFALLRVFWPMLEKLFRS  694 (930)
Q Consensus       615 ll~p~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~i~~~l~~~~~~~~~~~~p~~~~~~~i~~~l~~i~~~  694 (930)
                      +.......+.+.+............... ..+.  ......++.+++....          -..++...+++.+...+. 
T Consensus       542 l~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~l~--~~~~~~l~~~~~~~~~----------~~~~~~~~l~~~l~~~l~-  607 (861)
T d2bpta1         542 ISTFVMDKLGQTMSVDENQLTLEDAQSL-QELQ--SNILTVLAAVIRKSPS----------SVEPVADMLMGLFFRLLE-  607 (861)
T ss_dssp             HHHHHHHHHHHHTTSCGGGCCHHHHHHH-HHHH--HHHHHHHHHHHHHCGG----------GTGGGHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHHhHH-HHHH--HHHHHHHHHHHhcchh----------hHHHHHHHHHHHHhhhcc-
Confidence            7766666666665432210000000000 0000  1112222333332221          122344666777777664 


Q ss_pred             hhccchHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhhhCCc--chHHHHHHHHHHHhcCCCCccchHHHHHHH
Q 002370          695 EHMENGNLSTAACRALSLAIQSSGQHFVTLLPQVLDCLSTNFVSFQNH--ECYIRTASVVIEEFGHKDEYGPLFVTTFER  772 (930)
Q Consensus       695 ~~~~~~~v~e~~c~~~~~~i~~l~~~~~p~l~~l~~~l~~~~~~~~~~--~~~L~l~~~li~~fg~~~~~~~~l~~l~~~  772 (930)
                       -..+..+.+.++.++...+..+|..+.|+++.+++.+........+.  ...+.+++.++...|..  +.+.+..++..
T Consensus       608 -~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l~~~~~~v~~~a~~~l~~i~~~~~~~--~~~~~~~i~~~  684 (861)
T d2bpta1         608 -KKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED--FRRYSDAMMNV  684 (861)
T ss_dssp             -STTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG--GHHHHHHHHHH
T ss_pred             -cCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHH--hHhhHHHHHHH
Confidence             23556788889999999999999999999999999888766533111  12345556666655542  33444444333


Q ss_pred             HhhhHHHHHhhcCCCCCCCCchHHHHHHHHHHHHhhhhHHHHhhchhchHHHHHHHHHhhccC----ch-------hHHH
Q 002370          773 FSQAASVRALNSSYICDQEPDLVEAYTNFASTFVRTSRKEVLAASGALLEVSFQKAAICCTAM----HR-------GAAL  841 (930)
Q Consensus       773 l~~~~~~~~l~~~~~~~~~pD~~~~~f~l~~~~l~~~p~~~~~s~~~~l~~~l~~~l~~l~~~----e~-------~~~~  841 (930)
                      +.     ..+..   ...++++....+..++.++.+.+..|.    ++++.++.....++...    ..       ....
T Consensus       685 L~-----~~l~~---~~~~~~~k~~~~~~l~~i~~~~~~~~~----~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  752 (861)
T d2bpta1         685 LA-----QMISN---PNARRELKPAVLSVFGDIASNIGADFI----PYLNDIMALCVAAQNTKPENGTLEALDYQIKVLE  752 (861)
T ss_dssp             HH-----HHHHC---TTCCTTHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHH
T ss_pred             HH-----HHhCC---CCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHH
Confidence            22     22332   246788889999999999998877665    35666666666555432    11       1234


Q ss_pred             HHHHHHHHHHh
Q 002370          842 AAMSYLSCFLE  852 (930)
Q Consensus       842 a~~~fl~~li~  852 (930)
                      +++..+..++.
T Consensus       753 ~~~~~~~~i~~  763 (861)
T d2bpta1         753 AVLDAYVGIVA  763 (861)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            56666666665

PyMOL of d2bpta1

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure