Citrus Sinensis ID: 002376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
Protein Sequence
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKTKS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEccccccEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccHHHHHccccccEEEEccccccccccHHHHHHHccccccccccccEEcccccccccccccEEEccccccccccccccccccccccccccccEEEcccccccccccHHHHccccccccEEccccEEEccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEcccccccccccccccccccccEEcccccccccccccccccccccccccccccccEEcccccccccccHHHHcccccccccccccccccccHHHHHccccccccccccccccccccHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccEEEcccccEEEccccccccHHHHHHHHHHccccccccccEEEEEEccccccccEEEEEEcccccccccHHccccccHHHHHHHHHHHHHccccccEEEcccccccccccccccEEEccccccHHccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEEccccEEEEEccHHHHHcccHHHccccccHEEEEccccccccccHHHccccHHHEEEEccccccccccHHHHcccccccEEEcccccccccccHHHHcccccEEEEcccccccccccHHHcccccccEEEEcccccccccccccccccHHHccccccEEEEEccccccccccHHHHcccccccEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHcccccccEEccccccEEEccHHHcccccHHHcccccccEEEccccccccccccHHccccccEEEEcccccccccccHHHHccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccEccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHccccccccHHHHHHHHccccHHcEEEcccccEEEEEEcccccHHHHHHHHHHHHcHHHHHHHHHHEEccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccHHHEEEcccccEEEccHHHcEHccccccccccccccEEEEccEcEccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHcccccHcccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MHFATLAVLLHVtwlpfgadsasvgintDKEALMSFKsqisqespssplsywnpssspctwpgvicnnfgnrviglnlssfglegtisphignlSFLRSIQLQNnklsgnlpreiGNLFRLRVLNISFnnlqgelpvniSKLTELKMLDLMANKITGRVTDDQLRNLRSLQVlnfgknllwgsippsianlipsdlsrlenlkvLDLTINrlagtvpstiyNMTSLVHLRLASnqlggeipydvrdtlpNLLDFIYCFnrftgkipgslhnltNIQIIRMTHNllegtlppglgnlpflrtynigfnkivssgddegLSFITSLTnsthlnylaldgnqfegkipesigNFSNELSKLYlggnhiygkipasigrlRSLTLLdlsynsisgeipieigqlqglqvlglagneipggipnSLANLKklnqidlsgneltgeipisfgnfQSLLsidlsnnringnipkgilrplpeeISRLENVVTidlsdnslsgnlpnslknCKSLEELLMAYNQFSGPIPNIVAELKGLevldlssnklsgsipsdLQNLQALRSLNLtfnnlegvvpsegifrnmsnvhlkgnpklclqlgcenprshgsrLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFkvchpkisYDELRRatgnfshenligsgsfgsvlhnertgswKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSngslgdwihgerkneLDITSALDylhndcevpvvhsdlkpgnilldeemtakvgdFGLARFLLErvdnqssissTHVFmgsigyvppeyglgerpstagdvptsesfageFNIVKWVesnlpenvlqVLDPELRQLMTSNESQTIQLHDCLITIIGsvglscttespggriGIREALRRLKSSQEILLkqqvpngktks
Flexible Loop (DISEMBL)
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDlsdnslsgnlpnSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSalfkvchpkisYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLkssqeillkqqvpngktks
Low Complexity Region (SEG)
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQEspssplsywnpssspCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIgqlqglqvlglagNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKTKS
Disordered region (IsUnstruct)
**FATLAVLLHVTWLPFGADSASVGI******************************SPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD*********SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSS**********LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL***************FAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIR*************************
Disordered Region (DISOPRED)
*HFATLAVLLHVTWLPFGADSA***INTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC*******************IIVTIMAVIAGCFLIVWPI*********************KISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL*************VFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL********IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ***************
Disordered Region (DISEMBL)
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSF******************SSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ********
Disordered Region (DISPRO)
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAK***VSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV******SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT**ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKTKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	929	2.2.26 [Sep-21-2011]
C0LGP4	1010	Probable LRR receptor-lik	yes	no	0.948	0.872	0.385	1e-166
C0LGT6	1031	LRR receptor-like serine/	no	no	0.954	0.860	0.376	1e-160
Q9SD62	1025	Putative receptor-like pr	no	no	0.951	0.862	0.379	1e-151
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.871	0.648	0.318	1e-104
Q9FL28	1173	LRR receptor-like serine/	no	no	0.871	0.690	0.336	1e-104
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.867	0.643	0.316	1e-103
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.892	0.845	0.326	1e-103
O49545	1003	Leucine-rich repeat recep	no	no	0.908	0.841	0.306	1e-101
C0LGW6	966	LRR receptor-like serine/	no	no	0.898	0.864	0.315	1e-101
Q9SGP2	996	Receptor-like protein kin	no	no	0.890	0.830	0.318	1e-100

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 382/991 (38%), Positives = 533/991 (53%), Gaps = 110/991 (11%)

Query: 28   TDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
            TD++AL+ FKSQ+S E     LS WN S   C W GV C     RV  L L    L G I
Sbjct: 24   TDRQALLQFKSQVS-EDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query: 88   SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
            SP IGNLSFL S+ L  N   G +P+E+G L RL  L++  N L+G +P+ +   + L  
Sbjct: 83   SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142

Query: 148  LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
            L L +N++ G V   +L +L +L  LN   N + G +P S+ NL                
Sbjct: 143  LRLDSNRLGGSVPS-ELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query: 192  IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
            IPSD+++L  +  L L  N  +G  P  +YN++SL  L +  N   G +  D+   LPNL
Sbjct: 202  IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query: 252  LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
            L F    N FTG IP +L N++ ++ + M  N L G++P   GN+P L+   +  N +  
Sbjct: 262  LSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSL-G 319

Query: 312  SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
            S     L F+TSLTN T L  L +  N+  G +P SI N S +L  L LGG  I G IP 
Sbjct: 320  SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379

Query: 372  SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID 431
             IG L +L  L L  N +SG +P  +G+L  L+ L L  N + GGIP  + N+  L  +D
Sbjct: 380  DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLD 439

Query: 432  LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR----------------PLPE 475
            LS N   G +P S GN   LL + + +N++NG IP  I++                 LP+
Sbjct: 440  LSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQ 499

Query: 476  EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD 535
            +I  L+N+ T+ L DN LSG LP +L NC ++E L +  N F G IP++   L G++ +D
Sbjct: 500  DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVD 558

Query: 536  LSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC----- 590
            LS+N LSGSIP    +   L  LNL+FNNLEG VP +GIF N + V + GN  LC     
Sbjct: 559  LSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMG 618

Query: 591  LQLG---CENP---RSHGSRL--IILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVG--- 639
             QL     + P   + H SRL  +++ + V I  ++      V  I +RKRK  +     
Sbjct: 619  FQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIWLRKRKKNKETNNP 678

Query: 640  VSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGS----------------VLHNERT 683
              +  +V H KISY +LR AT  FS  N++GSGSFG+                VL+ +R 
Sbjct: 679  TPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRR 738

Query: 684  GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK 743
            G+ KSF+AECE+L+++RHRNLVKL+T+CSS+D +  EF AL+YEF+ NGSL  W+H E  
Sbjct: 739  GAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGSLDMWLHPEEV 798

Query: 744  NE-----------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
             E                 +D+ S LDYLH  C  P+ H DLKP N+LLD+++TA V DF
Sbjct: 799  EEIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNVLLDDDLTAHVSDF 858

Query: 787  GLARFLLERVDNQS---SISSTHVFMGSIGYVPPEYGLGERPSTAGDV------------ 831
            GLAR LL + D +S    +SS  V  G+IGY  PEYG+G +PS  GDV            
Sbjct: 859  GLARLLL-KFDEESFFNQLSSAGV-RGTIGYAAPEYGVGGQPSINGDVYSFGILLLEMFT 916

Query: 832  ---PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSV 888
               PT+E F G F +  + +S LPE +L ++D  +  +        ++   CL T++  V
Sbjct: 917  GKRPTNELFGGNFTLNSYTKSALPERILDIVDESILHIGLRVGFPVVE---CL-TMVFEV 972

Query: 889  GLSCTTESPGGRIGIREALRRLKSSQEILLK 919
            GL C  ESP  R+     ++ L S +E   K
Sbjct: 973  GLRCCEESPMNRLATSIVVKELISIRERFFK 1003

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  565 bits (1456), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 380/1010 (37%), Positives = 536/1010 (53%), Gaps = 123/1010 (12%)

Query: 3   FATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWP 62
           F  L +LL V         A     TD +AL+ FKSQ+S+ +    L+ WN SS  C W 
Sbjct: 9   FNALTLLLQVCIFA----QARFSNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWI 64

Query: 63  GVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLR 122
           GV C     RVI LNL  F L G ISP IGNLSFLR + L +N     +P+++G LFRL+
Sbjct: 65  GVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQ 124

Query: 123 VLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWG 182
            LN+S+N L+G +P ++S  + L  +DL +N + G     +L +L  L +L+  KN L G
Sbjct: 125 YLNMSYNLLEGRIPSSLSNCSRLSTVDLSSNHL-GHGVPSELGSLSKLAILDLSKNNLTG 183

Query: 183 SIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSL 226
           + P S+ NL                IP +++RL  +    + +N  +G  P  +YN++SL
Sbjct: 184 NFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSL 243

Query: 227 VHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE 286
             L LA N   G +  D    LPNL   +   N+FTG IP +L N+++++   ++ N L 
Sbjct: 244 ESLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLS 303

Query: 287 GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE 346
           G++P   G L  L    I  N  + +    GL FI ++ N T L YL +  N+  G++P 
Sbjct: 304 GSIPLSFGKLRNLWWLGIR-NNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPA 362

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL 406
           SI N S  L+ L+LG N I G IP  IG L SL  L L  N +SGE+P+  G+L  LQV+
Sbjct: 363 SIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVV 422

Query: 407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIP 466
            L  N I G IP+   N+ +L ++ L+ N   G IP S G  + LL + +  NR+NG IP
Sbjct: 423 DLYSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIP 482

Query: 467 KGILR----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEEL 510
           + IL+                  PEE+ +LE +V +  S N LSG +P ++  C S+E L
Sbjct: 483 QEILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFL 542

Query: 511 LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP 570
            M  N F G IP+I + L  L+ +D S+N LSG IP  L +L +LR+LNL+ N  EG VP
Sbjct: 543 FMQGNSFDGAIPDI-SRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVP 601

Query: 571 SEGIFRNMSNVHLKGNPKLC-----LQLG-C---ENPRSHGSRLIILSIIVTIMAVIAGC 621
           + G+FRN + V + GN  +C     +QL  C    +PR      +   ++  I   IA  
Sbjct: 602 TTGVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIASL 661

Query: 622 FLIV------WPIIVRKRKAKRVG---VSALFKVCHPKISYDELRRATGNFSHENLIGSG 672
            LI+      W +  +K+     G    S    + H K+SY+EL  AT  FS  NLIGSG
Sbjct: 662 LLIIIVASLCWFMKRKKKNNASDGNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSG 721

Query: 673 SFGS----------------VLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDS 716
           +FG+                VL+  + G+ KSF+AECET + +RHRNLVKLIT CSSLDS
Sbjct: 722 NFGNVFKGLLGPENKLVAVKVLNLLKHGATKSFMAECETFKGIRHRNLVKLITVCSSLDS 781

Query: 717 KNMEFLALVYEFLSNGSLGDWIH---GERKNE--------------LDITSALDYLHNDC 759
           +  +F ALVYEF+  GSL  W+     ER N+              +D+ SAL+YLH  C
Sbjct: 782 EGNDFRALVYEFMPKGSLDMWLQLEDLERVNDHSRSLTPAEKLNIAIDVASALEYLHVHC 841

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS--STHVFMGSIGYVPP 817
             PV H D+KP NILLD+++TA V DFGLA+ LL + D +S ++  S+    G+IGY  P
Sbjct: 842 HDPVAHCDIKPSNILLDDDLTAHVSDFGLAQ-LLYKYDRESFLNQFSSAGVRGTIGYAAP 900

Query: 818 EYGLGERPSTAGDV---------------PTSESFAGEFNIVKWVESNLPENVLQVLDPE 862
           EYG+G +PS  GDV               PT ESFAG++N+  + +S             
Sbjct: 901 EYGMGGQPSIQGDVYSFGILLLEMFSGKKPTDESFAGDYNLHSYTKS------------I 948

Query: 863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
           L    +S  S  I   D  + ++  VG+ C+ E P  R+   EA+R L S
Sbjct: 949 LSGCTSSGGSNAI---DEGLRLVLQVGIKCSEEYPRDRMRTDEAVRELIS 995

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  536 bits (1381), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 378/995 (37%), Positives = 535/995 (53%), Gaps = 111/995 (11%)

Query: 28   TDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
            TDK+AL+ FKSQ+S E+    L  WN S   C+W GV C     RV G++L    L G +
Sbjct: 39   TDKQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97

Query: 88   SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
            SP +GNLSFLRS+ L +N   G +P E+GNLFRL+ LN+S N   G +PV +S  + L  
Sbjct: 98   SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157

Query: 148  LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
            LDL +N +   V   +  +L  L +L+ G+N L G  P S+ NL                
Sbjct: 158  LDLSSNHLEQGVPL-EFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216

Query: 192  IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
            IP D++RL+ +    + +N+  G  P  IYN++SL+ L +  N   G +  D    LPNL
Sbjct: 217  IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276

Query: 252  LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI-- 309
                   N FTG IP +L N+++++ + +  N L G +P   G L  L    +  N +  
Sbjct: 277  QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336

Query: 310  VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
             SSGD   L F+ +LTN + L YL +  N+  G++P  I N S +L++L LGGN I G I
Sbjct: 337  YSSGD---LDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSI 393

Query: 370  PASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
            P  IG L SL  LDL  N ++G++P  +G+L  L+ + L  N + G IP+SL N+  L  
Sbjct: 394  PHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTY 453

Query: 430  IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR----------------PL 473
            + L  N   G IP S G+   LL ++L  N++NG+IP  ++                 PL
Sbjct: 454  LYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPL 513

Query: 474  PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
             ++I +L+ ++ +D+S N LSG +P +L NC SLE LL+  N F GPIP+I   L GL  
Sbjct: 514  RQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRF 572

Query: 534  LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC--- 590
            LDLS N LSG+IP  + N   L++LNL+ NN +G VP+EG+FRN S + + GN  LC   
Sbjct: 573  LDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGI 632

Query: 591  --LQL---GCENPRSHGSRLIILSIIVTIMAVIAGCFLIV------WPIIVRKRKAKRVG 639
              LQL     E PR H S   I++I V+ +        +       + + V+  +A    
Sbjct: 633  PSLQLQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRVKSVRANNNE 692

Query: 640  VSALF---KVCHPKISYDELRRATGNFSHENLIGSGSFGS----------------VLHN 680
                F   K  + KISYDEL + TG FS  NLIGSG+FG+                VL+ 
Sbjct: 693  NDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVLNL 752

Query: 681  ERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
             + G+ KSFIAECE L  +RHRNLVKL+T CSS D +  +F ALVYEF+ NG+L  W+H 
Sbjct: 753  CKRGAAKSFIAECEALGGIRHRNLVKLVTICSSSDFEGNDFRALVYEFMPNGNLDMWLHP 812

Query: 741  ERKNE-----------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV 783
            +   E                 +D+ SAL YLH  C  P+ H D+KP NILLD+++TA V
Sbjct: 813  DEIEETGNPSRTLGLFARLNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTAHV 872

Query: 784  GDFGLARFLL--ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------- 831
             DFGLA+ LL  +R       SS  V  G+IGY  PEYG+G  PS  GDV          
Sbjct: 873  SDFGLAQLLLKFDRDTFHIQFSSAGV-RGTIGYAAPEYGMGGHPSIMGDVYSFGIVLLEI 931

Query: 832  -----PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIG 886
                 PT++ F     +  + +S L +   Q LD     ++    +Q   + +CL T++ 
Sbjct: 932  FTGKRPTNKLFVDGLTLHSFTKSALQKR--QALDITDETILRGAYAQHFNMVECL-TLVF 988

Query: 887  SVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ 921
             VG+SC+ ESP  RI + EA+ +L S +E   + +
Sbjct: 989  RVGVSCSEESPVNRISMAEAISKLVSIRESFFRDE 1023

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  381 bits (978), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 309/969 (31%), Positives = 462/969 (47%), Gaps = 159/969 (16%)

Query: 76   LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
            L+LS+  L G I     N+S L  + L NN LSG+LP+ I  N   L  L +S   L GE
Sbjct: 292  LDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGE 351

Query: 135  LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL--- 191
            +PV +SK   LK LDL  N + G + +  L  L  L  L    N L G++ PSI+NL   
Sbjct: 352  IPVELSKCQSLKQLDLSNNSLAGSIPE-ALFELVELTDLYLHNNTLEGTLSPSISNLTNL 410

Query: 192  -------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGG 238
                         +P ++S L  L+VL L  NR +G +P  I N TSL  + +  N   G
Sbjct: 411  QWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEG 470

Query: 239  EIPYDV-RDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP 297
            EIP  + R    NLL      N   G +P SL N   + I+ +  N L G++P   G L 
Sbjct: 471  EIPPSIGRLKELNLLHLRQ--NELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLK 528

Query: 298  FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLN------------------YLALD--G 337
             L    +  N +  +  D     + SL N T +N                  YL+ D   
Sbjct: 529  GLEQLMLYNNSLQGNLPDS----LISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTN 584

Query: 338  NQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI 397
            N FE +IP  +GN  N L +L LG N + GKIP ++G++R L+LLD+S N+++G IP+++
Sbjct: 585  NGFEDEIPLELGNSQN-LDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQL 643

Query: 398  GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLS 457
               + L  + L  N + G IP  L  L +L ++ LS N+    +P    N   LL + L 
Sbjct: 644  VLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSLD 703

Query: 458  NNRINGNIPKGILR----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSL 501
             N +NG+IP+ I                   LP+ + +L  +  + LS NSL+G +P  +
Sbjct: 704  GNSLNGSIPQEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEI 763

Query: 502  KNCKSLEELL-MAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNL 560
               + L+  L ++YN F+G IP+ +  L  LE LDLS N+L+G +P  + ++++L  LN+
Sbjct: 764  GQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNV 823

Query: 561  TFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQ--LGCENPRSHGSR-------LIILSII 611
            +FNNL G +  +  F         GN  LC      C   RS+  +       ++I+S I
Sbjct: 824  SFNNLGGKLKKQ--FSRWPADSFLGNTGLCGSPLSRCNRVRSNNKQQGLSARSVVIISAI 881

Query: 612  VTIMAVIAGCFLIVWPIIVRKRKA--KRVGVSA----------------LFK--VCHPKI 651
              + A+  G  ++V  +  ++R    K+VG  +                LF+       I
Sbjct: 882  SALTAI--GLMILVIALFFKQRHDFFKKVGHGSTAYTSSSSSSQATHKPLFRNGASKSDI 939

Query: 652  SYDELRRATGNFSHENLIGSGSFGSV----LHNERTGS-----W-------KSFIAECET 695
             ++++  AT N S E +IGSG  G V    L N  T +     W       KSF  E +T
Sbjct: 940  RWEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKT 999

Query: 696  LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE------RKNELD-- 747
            L  +RHR+LVKL+  CS   SK+     L+YE++ NGS+ DW+H +      +K  LD  
Sbjct: 1000 LGRIRHRHLVKLMGYCS---SKSEGLNLLIYEYMKNGSIWDWLHEDKPVLEKKKKLLDWE 1056

Query: 748  --------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
                    +   ++YLH+DC  P+VH D+K  N+LLD  M A +GDFGLA+ L E  D  
Sbjct: 1057 ARLRIAVGLAQGVEYLHHDCVPPIVHRDIKSSNVLLDSNMEAHLGDFGLAKVLTENCD-- 1114

Query: 800  SSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEFNIV 844
            ++  S   F  S GY+ PEY    + +   DV               PT   F  E ++V
Sbjct: 1115 TNTDSNTWFACSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTDSVFGAEMDMV 1174

Query: 845  KWVESNLP---ENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI 901
            +WVE++L        +++DP+L+ L+   E    Q+ +        + L CT  SP  R 
Sbjct: 1175 RWVETHLEVAGSARDKLIDPKLKPLLPFEEDAACQVLE--------IALQCTKTSPQERP 1226

Query: 902  GIREALRRL 910
              R+A   L
Sbjct: 1227 SSRQACDSL 1235

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 324/962 (33%), Positives = 464/962 (48%), Gaps = 152/962 (15%)

Query: 63   GVICNNFGN--RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR 120
            G I  +FGN   +  L L+   LEG I   IGN S L  ++L +N+L+G +P E+GNL +
Sbjct: 230  GKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQ 289

Query: 121  LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
            L+ L I  N L   +P ++ +LT+L  L L  N + G +++ ++  L SL+VL    N  
Sbjct: 290  LQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISE-EIGFLESLEVLTLHSNNF 348

Query: 181  WGSIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMT 224
             G  P SI NL                +P+DL  L NL+ L    N L G +PS+I N T
Sbjct: 349  TGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCT 408

Query: 225  SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
             L  L L+ NQ+ GEIP        NL       N FTG+IP  + N +N++ + +  N 
Sbjct: 409  GLKLLDLSHNQMTGEIPRGFGRM--NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNN 466

Query: 285  LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI 344
            L GTL P +G L  LR   + +N +      E       + N   LN L L  N F G+I
Sbjct: 467  LTGTLKPLIGKLQKLRILQVSYNSLTGPIPRE-------IGNLKDLNILYLHSNGFTGRI 519

Query: 345  PESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ 404
            P  + N +  L  L +  N + G IP  +  ++ L++LDLS N  SG+IP    +L+ L 
Sbjct: 520  PREMSNLT-LLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLT 578

Query: 405  VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIP----ISFGNFQSLLSIDLSNNR 460
             L L GN+  G IP SL +L  LN  D+S N LTG IP     S  N Q  L ++ SNN 
Sbjct: 579  YLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQ--LYLNFSNNL 636

Query: 461  INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL------------- 507
            + G IPK        E+ +LE V  IDLS+N  SG++P SL+ CK++             
Sbjct: 637  LTGTIPK--------ELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGH 688

Query: 508  --EELL----------MAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
              +E+           ++ N FSG IP     +  L  LDLSSN L+G IP  L NL  L
Sbjct: 689  IPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTL 748

Query: 556  RSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENP---------RSHGSR-- 604
            + L L  NNL+G VP  G+F+N++   L GN  LC   G + P          SH S+  
Sbjct: 749  KHLKLASNNLKGHVPESGVFKNINASDLMGNTDLC---GSKKPLKPCTIKQKSSHFSKRT 805

Query: 605  ---LIIL-----SIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDEL 656
               LIIL      ++V ++ +I  C       I    ++    + +  K+   +    EL
Sbjct: 806  RVILIILGSAAALLLVLLLVLILTCCKKKEKKIENSSESSLPDLDSALKL--KRFEPKEL 863

Query: 657  RRATGNFSHENLIGSGSFGSVLHNE-----------------RTGSWKSFIAECETLRNV 699
             +AT +F+  N+IGS S  +V   +                    S K F  E +TL  +
Sbjct: 864  EQATDSFNSANIIGSSSLSTVYKGQLEDGTVIAVKVLNLKEFSAESDKWFYTEAKTLSQL 923

Query: 700  RHRNLVKLIT-SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK------NELD----I 748
            +HRNLVK++  +  S  +K     ALV  F+ NG+L D IHG          ++D    I
Sbjct: 924  KHRNLVKILGFAWESGKTK-----ALVLPFMENGNLEDTIHGSAAPIGSLLEKIDLCVHI 978

Query: 749  TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
             S +DYLH+    P+VH DLKP NILLD +  A V DFG AR L  R D  S+ +ST  F
Sbjct: 979  ASGIDYLHSGYGFPIVHCDLKPANILLDSDRVAHVSDFGTARILGFREDG-STTASTSAF 1037

Query: 809  MGSIGYVPPEYGLGERPSTAGDV---------------PTS--ESFAGEFNIVKWVESNL 851
             G+IGY+ PE+    + +T  DV               PTS  +  + +  + + VE ++
Sbjct: 1038 EGTIGYLAPEFAYMRKVTTKADVFSFGIIMMELMTKQRPTSLNDEDSQDMTLRQLVEKSI 1097

Query: 852  ---PENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
                + +++VLD EL   + S + Q   + D L      + L CT+  P  R  + E L 
Sbjct: 1098 GNGRKGMVRVLDMELGDSIVSLK-QEEAIEDFL-----KLCLFCTSSRPEDRPDMNEILT 1151

Query: 909  RL 910
             L
Sbjct: 1152 HL 1153

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  377 bits (967), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 304/961 (31%), Positives = 458/961 (47%), Gaps = 155/961 (16%)

Query: 76   LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
            L+LSS  L G I      ++ L  + L  N+LSG+LP+ I  N   L+ L +S   L GE
Sbjct: 293  LDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGE 352

Query: 135  LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL--- 191
            +P  IS    LK+LDL  N +TG++ D  L  L  L  L    N L G++  SI+NL   
Sbjct: 353  IPAEISNCQSLKLLDLSNNTLTGQIPDS-LFQLVELTNLYLNNNSLEGTLSSSISNLTNL 411

Query: 192  -------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGG 238
                         +P ++  L  L+++ L  NR +G +P  I N T L  +    N+L G
Sbjct: 412  QEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSG 471

Query: 239  EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
            EIP  +   L +L       N   G IP SL N   + +I +  N L G++P   G L  
Sbjct: 472  EIPSSI-GRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTA 530

Query: 299  LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLN------------------YLALD--GN 338
            L  + I  N +  +  D     + +L N T +N                  YL+ D   N
Sbjct: 531  LELFMIYNNSLQGNLPDS----LINLKNLTRINFSSNKFNGSISPLCGSSSYLSFDVTEN 586

Query: 339  QFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIG 398
             FEG IP  +G  +N L +L LG N   G+IP + G++  L+LLD+S NS+SG IP+E+G
Sbjct: 587  GFEGDIPLELGKSTN-LDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELG 645

Query: 399  QLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSN 458
              + L  + L  N + G IP  L  L  L ++ LS N+  G +P    +  ++L++ L  
Sbjct: 646  LCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLDG 705

Query: 459  NRINGNIPKGILR----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSLK 502
            N +NG+IP+ I                  PLP  I +L  +  + LS N+L+G +P  + 
Sbjct: 706  NSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIG 765

Query: 503  NCKSLEELL-MAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT 561
              + L+  L ++YN F+G IP+ ++ L  LE LDLS N+L G +P  + ++++L  LNL+
Sbjct: 766  QLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLS 825

Query: 562  FNNLEGVVPSEGIFRNMSNVHLKGNPKLCL-------QLGCENPRSHGSRLIILSIIVTI 614
            +NNLEG +  +  F         GN  LC        + G +N RS   + +++   ++ 
Sbjct: 826  YNNLEGKLKKQ--FSRWQADAFVGNAGLCGSPLSHCNRAGSKNQRSLSPKTVVIISAISS 883

Query: 615  MAVIAGCFLIVWPIIVRKR-----KAKRVGV-----------SALFKVCHPK--ISYDEL 656
            +A IA   L++  I+  K+     K  R G            + LF     K  I +D++
Sbjct: 884  LAAIALMVLVI--ILFFKQNHDLFKKVRGGNSAFSSNSSSSQAPLFSNGGAKSDIKWDDI 941

Query: 657  RRATGNFSHENLIGSGSFGSVLHNE-RTGS--------W-------KSFIAECETLRNVR 700
              AT   + E +IGSG  G V   E + G         W       KSF  E +TL  +R
Sbjct: 942  MEATHYLNEEFMIGSGGSGKVYKAELKNGETIAVKKILWKDDLMSNKSFNREVKTLGTIR 1001

Query: 701  HRNLVKLITSCSS-LDSKNMEFLALVYEFLSNGSLGDWIHGE---RKNE----------- 745
            HR+LVKL+  CSS  D  N+    L+YE+++NGS+ DW+H     +K E           
Sbjct: 1002 HRHLVKLMGYCSSKADGLNL----LIYEYMANGSVWDWLHANENTKKKEVLGWETRLKIA 1057

Query: 746  LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
            L +   ++YLH DC  P+VH D+K  N+LLD  + A +GDFGLA+ L    D  ++  S 
Sbjct: 1058 LGLAQGVEYLHYDCVPPIVHRDIKSSNVLLDSNIEAHLGDFGLAKILTGNYD--TNTESN 1115

Query: 806  HVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEFNIVKWVESN 850
             +F GS GY+ PEY    + +   DV               PT   F  E ++V+WVE+ 
Sbjct: 1116 TMFAGSYGYIAPEYAYSLKATEKSDVYSMGIVLMEIVTGKMPTEAMFDEETDMVRWVETV 1175

Query: 851  L-----PENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIRE 905
            L      E   +++D EL+ L+   E    Q+ +        + L CT   P  R   R+
Sbjct: 1176 LDTPPGSEAREKLIDSELKSLLPCEEEAAYQVLE--------IALQCTKSYPQERPSSRQ 1227

Query: 906  A 906
            A
Sbjct: 1228 A 1228

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 307/939 (32%), Positives = 474/939 (50%), Gaps = 110/939 (11%)

Query: 59  CTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNL 118
           C W GV CN    +VI L++S   L G ISP I NL+ L  + L  N   G +P EIG+L
Sbjct: 54  CNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSL 113

Query: 119 FR-LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRN--LRSLQVLNF 175
              L+ L++S N L G +P  +  L  L  LDL +N++ G +      N    SLQ ++ 
Sbjct: 114 HETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDL 173

Query: 176 GKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ 235
             N L G IP +           L+ L+ L L  N+L GTVPS++ N T+L  + L SN 
Sbjct: 174 SNNSLTGEIPLNYH-------CHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNM 226

Query: 236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGK--------IPGSLHNLTNIQIIRMTHNLLEG 287
           L GE+P  V   +P L      +N F              SL N +++Q + +  N L G
Sbjct: 227 LSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGG 286

Query: 288 TLPPGLGNLPF-LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE 346
            +   + +L   L   ++  N+I  S   E       ++N  +L  L L  N   G IP 
Sbjct: 287 EITSSVRHLSVNLVQIHLDQNRIHGSIPPE-------ISNLLNLTLLNLSSNLLSGPIPR 339

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL 406
            +   S +L ++YL  NH+ G+IP  +G +  L LLD+S N++SG IP   G L  L+ L
Sbjct: 340 ELCKLS-KLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRRL 398

Query: 407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS-FGNFQSL-LSIDLSNNRINGN 464
            L GN + G +P SL     L  +DLS N LTG IP+    N ++L L ++LS+N ++G 
Sbjct: 399 LLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSG- 457

Query: 465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI 524
                  P+P E+S+++ V+++DLS N LSG +P  L +C +LE L ++ N FS  +P+ 
Sbjct: 458 -------PIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSS 510

Query: 525 VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLK 584
           + +L  L+ LD+S N+L+G+IP   Q    L+ LN +FN L G V  +G F  ++     
Sbjct: 511 LGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESFL 570

Query: 585 GNPKLCLQL----GCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGV 640
           G+  LC  +     C+  + H    ++L ++++++A    C +  +P++ R R  K + V
Sbjct: 571 GDSLLCGSIKGMQACK--KKHKYPSVLLPVLLSLIATPVLC-VFGYPLVQRSRFGKNLTV 627

Query: 641 SALFKV-----------CHPKISYDELRRATGNFSHENLIGSGSFG----SVLHNERTGS 685
            A  +V            +P+ISY +L  ATG F+  +LIGSG FG     VL N    +
Sbjct: 628 YAKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVA 687

Query: 686 WK------------SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGS 733
            K            SF  EC+ L+  RHRNL+++IT+CS        F ALV   + NGS
Sbjct: 688 VKVLDPKTALEFSGSFKRECQILKRTRHRNLIRIITTCSKPG-----FNALVLPLMPNGS 742

Query: 734 LGDWIH-GERKNE-----------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA 781
           L   ++ GE  ++            D+   + YLH+   V VVH DLKP NILLD+EMTA
Sbjct: 743 LERHLYPGEYSSKNLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDEMTA 802

Query: 782 KVGDFGLARFLL---ERVDNQSSI---SSTHVFMGSIGYVPPEYGLGERPSTAGDV---- 831
            V DFG++R +    E V    S+   S+  +  GS+GY+ PEYG+G+R ST GDV    
Sbjct: 803 LVTDFGISRLVQGVEETVSTDDSVSFGSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFG 862

Query: 832 -----------PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ-LHD 879
                      PT        ++ ++++S+ P+++  +++  L +     + +  + L  
Sbjct: 863 VLLLEIVSGRRPTDVLVNEGSSLHEFMKSHYPDSLEGIIEQALSRWKPQGKPEKCEKLWR 922

Query: 880 CLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL 918
            +I  +  +GL CT  +P  R  + +    +   +E L 
Sbjct: 923 EVILEMIELGLVCTQYNPSTRPDMLDVAHEMGRLKEYLF 961

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 301/981 (30%), Positives = 457/981 (46%), Gaps = 137/981 (13%)

Query: 28  TDKEALMSFKSQI--SQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEG 85
           ++  AL+S K+ +  + +  +SPLS W  S+S CTW GV C+     V  L+LS   L G
Sbjct: 24  SEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSG 83

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISK-LTE 144
           T+SP + +L  L+++ L  N +SG +P EI +L  LR LN+S N   G  P  IS  L  
Sbjct: 84  TLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVN 143

Query: 145 LKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL------------- 191
           L++LD+  N +TG +    + NL  L+ L+ G N   G IPPS  +              
Sbjct: 144 LRVLDVYNNNLTGDLP-VSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNEL 202

Query: 192 ---IPSDLSRLENLKVLDL-TINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRD- 246
              IP ++  L  L+ L +   N     +P  I N++ LV    A+  L GEIP ++   
Sbjct: 203 VGKIPPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKL 262

Query: 247 ----------------------TLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
                                 TL +L       N FTG+IP S   L N+ ++ +  N 
Sbjct: 263 QKLDTLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNK 322

Query: 285 LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI 344
           L G +P  +G+LP L    +  N           S    L  +  LN + L  N+  G +
Sbjct: 323 LHGEIPEFIGDLPELEVLQLWENNFTG-------SIPQKLGENGKLNLVDLSSNKLTGTL 375

Query: 345 PESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ 404
           P ++ +  N+L  L   GN ++G IP S+G+  SLT + +  N ++G IP  +  L  L 
Sbjct: 376 PPNMCS-GNKLETLITLGNFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPKLT 434

Query: 405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN 464
            + L  N + G +P +      L QI LS N+L+G +P + GNF  +  + L  N+  G 
Sbjct: 435 QVELQDNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQG- 493

Query: 465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI 524
                  P+P E+ +L+ +  ID S N  SG +   +  CK L  + ++ N+ SG IPN 
Sbjct: 494 -------PIPSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNE 546

Query: 525 VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLK 584
           +  +K L  L+LS N L GSIP  + ++Q+L SL+ ++NNL G+VP  G F   +     
Sbjct: 547 ITAMKILNYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFL 606

Query: 585 GNPKLC-LQLG-CEN------PRSHGSRLIILSIIVTIMAVIAGC---FLIVWPIIVRKR 633
           GNP LC   LG C++       +SH    +  S+ + ++  +  C   F +V   I++ R
Sbjct: 607 GNPDLCGPYLGPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVV--AIIKAR 664

Query: 634 KAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHN----------ERT 683
             K+   S  +++   +           +   +N+IG G  G V             +R 
Sbjct: 665 SLKKASESRAWRLTAFQRLDFTCDDVLDSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRL 724

Query: 684 GSW-------KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD 736
            +          F AE +TL  +RHR++V+L+  CS     N E   LVYE++ NGSLG+
Sbjct: 725 AAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCS-----NHETNLLVYEYMPNGSLGE 779

Query: 737 WIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
            +HG++          K  L+    L YLH+DC   +VH D+K  NILLD    A V DF
Sbjct: 780 VLHGKKGGHLHWDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADF 839

Query: 787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV----------PTSES 836
           GLA+FL     +  +        GS GY+ PEY    +     DV           T   
Sbjct: 840 GLAKFL----QDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRK 895

Query: 837 FAGEF----NIVKWVESNLPEN---VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVG 889
             GEF    +IV+WV      N   VL+VLDP L          +I +H+  +T +  V 
Sbjct: 896 PVGEFGDGVDIVQWVRKMTDSNKDSVLKVLDPRL---------SSIPIHE--VTHVFYVA 944

Query: 890 LSCTTESPGGRIGIREALRRL 910
           + C  E    R  +RE ++ L
Sbjct: 945 MLCVEEQAVERPTMREVVQIL 965

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 307/974 (31%), Positives = 479/974 (49%), Gaps = 139/974 (14%)

Query: 9   LLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNP--SSSPCTWPGVIC 66
           L  V ++ FG  SA   +N + +ALM+ K   S  +  + L  W+   +S  C+W GV C
Sbjct: 12  LAMVGFMVFGVASA---MNNEGKALMAIKGSFS--NLVNMLLDWDDVHNSDLCSWRGVFC 66

Query: 67  NNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNI 126
           +N    V+ LNLSS  L G ISP IG+L  L+SI LQ NKL+G +P EIGN   L  L++
Sbjct: 67  DNVSYSVVSLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDL 126

Query: 127 SFNNLQGELPVNISKLTELKMLDLMANKITGRV--TDDQLRNLRSLQVL------NFGKN 178
           S N L G++P +ISKL +L+ L+L  N++TG V  T  Q+ NL+ L +          + 
Sbjct: 127 SENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRL 186

Query: 179 LLWGSIPPSIA-------NLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRL 231
           L W  +   +          + SD+ +L  L   D+  N L GT+P +I N TS   L +
Sbjct: 187 LYWNEVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDI 246

Query: 232 ASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPP 291
           + NQ+ GEIPY++      +       NR TG+IP  +  +  + ++ ++ N L G +PP
Sbjct: 247 SYNQITGEIPYNI--GFLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPP 304

Query: 292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF 351
            LGNL F                                  L L GN   G IP  +GN 
Sbjct: 305 ILGNLSF-------------------------------TGKLYLHGNMLTGPIPSELGNM 333

Query: 352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN 411
           S  LS L L  N + G IP  +G+L  L  L+L+ N + G IP  I     L    + GN
Sbjct: 334 S-RLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGN 392

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
            + G IP +  NL  L  ++LS N   G+IP+  G+  +L  +DLS N  +G+IP     
Sbjct: 393 LLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPL---- 448

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL 531
                +  LE+++ ++LS N LSG LP    N +S++ + +++N  SG IP  + +L+ L
Sbjct: 449 ----TLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSFNLLSGVIPTELGQLQNL 504

Query: 532 EVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC- 590
             L L++NKL G IP  L N   L +LN++FNNL G+VP    F   +     GNP LC 
Sbjct: 505 NSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKNFSRFAPASFVGNPYLCG 564

Query: 591 ---LQLGCENPRSH-GSRLIILSIIVTIMAVIAGCFLIVWPIIVRKR-----KAKRVGVS 641
                +    P+S   SR  ++ I++ ++ ++   FL V+  + +K+       +  G++
Sbjct: 565 NWVGSICGPLPKSRVFSRGALICIVLGVITLLCMIFLAVYKSMQQKKILQGSSKQAEGLT 624

Query: 642 ALFKVCHPKIS---YDELRRATGNFSHENLIGSGSFGSV---------------LHNERT 683
            L  + H  ++   +D++ R T N + + +IG G+  +V               L+N+  
Sbjct: 625 KLV-ILHMDMAIHTFDDIMRVTENLNEKFIIGYGASSTVYKCALKSSRPIAIKRLYNQYP 683

Query: 684 GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE-R 742
            + + F  E ET+ ++RHRN+V L     S  + N+ F    Y+++ NGSL D +HG  +
Sbjct: 684 HNLREFETELETIGSIRHRNIVSLHGYALS-PTGNLLF----YDYMENGSLWDLLHGSLK 738

Query: 743 KNELD----------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           K +LD              L YLH+DC   ++H D+K  NILLDE   A + DFG+A+  
Sbjct: 739 KVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHRDIKSSNILLDENFEAHLSDFGIAK-- 796

Query: 793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT-----------SESFAGEF 841
              +    + +ST+V +G+IGY+ PEY    R +   D+ +            ++   E 
Sbjct: 797 --SIPASKTHASTYV-LGTIGYIDPEYARTSRINEKSDIYSFGIVLLELLTGKKAVDNEA 853

Query: 842 NIVKWVESNLPEN-VLQVLDPELRQ--LMTSNESQTIQLHDCLITIIGSVGLSCTTESPG 898
           N+ + + S   +N V++ +DPE+    +   +  +T QL            L CT  +P 
Sbjct: 854 NLHQLILSKADDNTVMEAVDPEVTVTCMDLGHIRKTFQL-----------ALLCTKRNPL 902

Query: 899 GRIGIREALRRLKS 912
            R  + E  R L S
Sbjct: 903 ERPTMLEVSRVLLS 916

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SGP2|HSL1_ARATH Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana GN=HSL1 PE=2 SV=1

 Score =  365 bits (937), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 312/980 (31%), Positives = 453/980 (46%), Gaps = 153/980 (15%)

Query: 39  QISQESPSSPLSYWNPS-SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFL 97
           ++S + P S LS WN + +SPC W GV C    + V  ++LSS  L G     I  LS L
Sbjct: 27  KLSLDDPDSYLSSWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICRLSNL 86

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITG 157
             + L NN ++  LP  I     L+ L++S N L GELP  ++ +  L  LDL  N  +G
Sbjct: 87  AHLSLYNNSINSTLPLNIAACKSLQTLDLSQNLLTGELPQTLADIPTLVHLDLTGNNFSG 146

Query: 158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT-V 216
            +         +L+VL+   NLL G+IPP + N+          LK+L+L+ N  + + +
Sbjct: 147 DIPA-SFGKFENLEVLSLVYNLLDGTIPPFLGNI--------STLKMLNLSYNPFSPSRI 197

Query: 217 PSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQ 276
           P    N+T+L  + L    L G+IP D    L  L+D     N   G IP SL  LTN+ 
Sbjct: 198 PPEFGNLTNLEVMWLTECHLVGQIP-DSLGQLSKLVDLDLALNDLVGHIPPSLGGLTNVV 256

Query: 277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD 336
            I + +N L G +PP LGNL  LR  +   N++     DE             L  L L 
Sbjct: 257 QIELYNNSLTGEIPPELGNLKSLRLLDASMNQLTGKIPDE--------LCRVPLESLNLY 308

Query: 337 GNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIE 396
            N  EG++P SI   S  L ++ + GN + G +P  +G    L  LD+S N  SG++P +
Sbjct: 309 ENNLEGELPASIA-LSPNLYEIRIFGNRLTGGLPKDLGLNSPLRWLDVSENEFSGDLPAD 367

Query: 397 IGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDL 456
           +     L+ L +  N   G IP SLA+ + L +I L+ N  +G +P  F     +  ++L
Sbjct: 368 LCAKGELEELLIIHNSFSGVIPESLADCRSLTRIRLAYNRFSGSVPTGFWGLPHVNLLEL 427

Query: 457 SNNRINGNIPKGI----------------LRPLPEEISRLENVVTIDLSDNSLSGNLPNS 500
            NN  +G I K I                   LPEEI  L+N+  +  S N  SG+LP+S
Sbjct: 428 VNNSFSGEISKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDS 487

Query: 501 L------------------------KNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDL 536
           L                        K+ K L EL +A N+F+G IP+ +  L  L  LDL
Sbjct: 488 LMSLGELGTLDLHGNQFSGELTSGIKSWKKLNELNLADNEFTGKIPDEIGSLSVLNYLDL 547

Query: 537 SSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL--- 593
           S N  SG IP  LQ+L+ L  LNL++N L G +P   + ++M      GNP LC  +   
Sbjct: 548 SGNMFSGKIPVSLQSLK-LNQLNLSYNRLSGDLPPS-LAKDMYKNSFIGNPGLCGDIKGL 605

Query: 594 -GCEN-PRSHGSRLIILSIIV-TIMAVIAGCFLIVWPIIVRK--RKAKRVGVSALFKVCH 648
            G EN  +  G   ++ SI V   M ++AG   + W     +  +KA+ +  S    +  
Sbjct: 606 CGSENEAKKRGYVWLLRSIFVLAAMVLLAG---VAWFYFKYRTFKKARAMERSKWTLMSF 662

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSV------------LHNERTGSWK--------- 687
            K+ + E      +   +N+IG+G+ G V            +    TGS K         
Sbjct: 663 HKLGFSE-HEILESLDEDNVIGAGASGKVYKVVLTNGETVAVKRLWTGSVKETGDCDPEK 721

Query: 688 ---------SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI 738
                    +F AE ETL  +RH+N+VKL   CS+ D K      LVYE++ NGSLGD +
Sbjct: 722 GYKPGVQDEAFEAEVETLGKIRHKNIVKLWCCCSTRDCK-----LLVYEYMPNGSLGDLL 776

Query: 739 HGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           H  +          K  LD    L YLH+D   P+VH D+K  NIL+D +  A+V DFG+
Sbjct: 777 HSSKGGMLGWQTRFKIILDAAEGLSYLHHDSVPPIVHRDIKSNNILIDGDYGARVADFGV 836

Query: 789 ARFLLERVD-NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------P 832
           A+     VD    +  S  V  GS GY+ PEY    R +   D+               P
Sbjct: 837 AK----AVDLTGKAPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILEIVTRKRP 892

Query: 833 TSESFAGEFNIVKWVESNLPEN-VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLS 891
                 GE ++VKWV S L +  +  V+DP+L                  I+ I +VGL 
Sbjct: 893 VDPEL-GEKDLVKWVCSTLDQKGIEHVIDPKLDSCFKEE-----------ISKILNVGLL 940

Query: 892 CTTESPGGRIGIREALRRLK 911
           CT+  P  R  +R  ++ L+
Sbjct: 941 CTSPLPINRPSMRRVVKMLQ 960

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	929
255573062	1015	serine-threonine protein kinase, plant-t	0.990	0.906	0.572	0.0
255573058	983	serine-threonine protein kinase, plant-t	0.964	0.911	0.577	0.0
357519429	993	Receptor protein kinase-like protein [Me	0.982	0.919	0.530	0.0
356528416	1006	PREDICTED: LRR receptor-like serine/thre	0.965	0.891	0.538	0.0
357519427	1023	Kinase-like protein [Medicago truncatula	0.979	0.889	0.518	0.0
224076934	1005	predicted protein [Populus trichocarpa]	0.963	0.890	0.526	0.0
449450538	1017	PREDICTED: probable LRR receptor-like se	0.988	0.902	0.513	0.0
449450542	988	PREDICTED: probable LRR receptor-like se	0.965	0.907	0.524	0.0
356511039	1019	PREDICTED: probable LRR receptor-like se	0.958	0.873	0.539	0.0
147843793	947	hypothetical protein VITISV_043616 [Viti	0.931	0.913	0.528	0.0

>gi|255573062|ref|XP_002527461.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533196|gb|EEF34953.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/1011 (57%), Positives = 713/1011 (70%), Gaps = 91/1011 (9%)

Query: 1    MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCT 60
            M+   LA+L+          S ++ I TDKEAL+  KS++   S    LS WN S+SPC+
Sbjct: 10   MYTLLLAILVSFRCKCPLVKSTALSIETDKEALIEIKSRLEPHS----LSSWNQSASPCS 65

Query: 61   WPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR 120
            W GV CN   +RV+GLNLSS G+ G+ISP+IGNLSFL+S++LQNN+L+G +P EI NL R
Sbjct: 66   WTGVFCNKLNHRVLGLNLSSLGVSGSISPYIGNLSFLQSLELQNNQLTGIIPDEICNLSR 125

Query: 121  LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
            LRV+N++ NNL+G +  NISKL+EL++LDL  N+ITG++TD +L +L  LQVLN G+N  
Sbjct: 126  LRVMNMNSNNLRGSILPNISKLSELRVLDLSMNRITGKITD-ELSSLTKLQVLNLGRNAF 184

Query: 181  WGSIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMT 224
             G+IPPS+ANL                IPSDLSRL NLKVLDLTIN L G VPS +YNM+
Sbjct: 185  SGTIPPSLANLSSLEDLILGTNTLSGIIPSDLSRLHNLKVLDLTINNLTGIVPSKVYNMS 244

Query: 225  SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
            SLV+L LASNQL G++P DV  TLPNLLDF  CFN+FTG +PGSLHNLTNI IIR+ HNL
Sbjct: 245  SLVNLALASNQLWGKLPSDVGVTLPNLLDFNLCFNKFTGLLPGSLHNLTNIHIIRVAHNL 304

Query: 285  LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI 344
            LEG +PPGL NLPFL  YNIGFN  V  GD +GL FITSLTNS+ L +LA DGN  +G I
Sbjct: 305  LEGKVPPGLENLPFLEMYNIGFNNFVGYGD-KGLDFITSLTNSSRLKFLAFDGNLLQGVI 363

Query: 345  PESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ 404
            PES+GN S  LSKLY+GGN IYG IPASIG L SLTLL+LSYNSI+G IP EIGQL+ LQ
Sbjct: 364  PESVGNLSKNLSKLYMGGNQIYGGIPASIGHLSSLTLLNLSYNSITGSIPREIGQLEHLQ 423

Query: 405  VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN 464
             LGLAGN+  G IP+SL NL+KLNQIDLS N L G IP +FGNFQSLL++DLSNN++NG+
Sbjct: 424  FLGLAGNQFSGSIPDSLGNLRKLNQIDLSRNGLVGAIPTTFGNFQSLLAMDLSNNKLNGS 483

Query: 465  IPKGILR-----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
            I K IL                   L E+I  LE+VVTIDLS+N LSG++P+ +KNC+SL
Sbjct: 484  IAKEILNLPSLSKILNLSNNFLSGNLSEDIGLLESVVTIDLSNNHLSGDIPSLIKNCESL 543

Query: 508  EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG 567
            EEL M+ N FSGP+P ++ E+KGLE LDLS N LSG IP DLQ L+AL+ LNL FN+LEG
Sbjct: 544  EELYMSRNSFSGPVPAVLGEMKGLETLDLSYNHLSGFIPPDLQKLEALQLLNLAFNDLEG 603

Query: 568  VVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWP 627
             VP  G+F N+S VHL+GN KL L+L C+NPRS  + ++ +SI++ + A +A C  I + 
Sbjct: 604  AVPCGGVFTNISKVHLEGNTKLSLELSCKNPRSRRANVVKISIVIAVTATLAFCLSIGYL 663

Query: 628  IIVRKRKAKRVGVS-ALFKVCHPKISYDELRRATGNFSHENLIGSGSFGS---------- 676
            + +R+ K K    S  L K  H  +SY ELR+AT NF+  NLIGSG FGS          
Sbjct: 664  LFIRRSKGKIEWASNNLIKEQHQIVSYRELRQATDNFAERNLIGSGGFGSVYKGFLVDGS 723

Query: 677  -----VLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSN 731
                 VL  ++TG WKSF+AECE LRNVRHRNLVKLITSCSS+D KN+EFLALVYEFL N
Sbjct: 724  AVAVKVLDIKQTGCWKSFVAECEALRNVRHRNLVKLITSCSSIDFKNVEFLALVYEFLGN 783

Query: 732  GSLGDWIHGERKNE--------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDE 777
            GSL DWI G+RK E              +D  SA+DYLH DCEVPVVH DLKP N+LL E
Sbjct: 784  GSLDDWIKGKRKKENGDGLNLMERLNVVIDAASAMDYLHYDCEVPVVHCDLKPSNVLLKE 843

Query: 778  EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV------ 831
            +MTAKVGDFGLA  L+E++  Q+SISSTHV  GSIGY+PPEYGLG +PSTAGDV      
Sbjct: 844  DMTAKVGDFGLATLLVEKIGVQTSISSTHVLKGSIGYIPPEYGLGVKPSTAGDVYSFGVM 903

Query: 832  ---------PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS--NESQTI---QL 877
                     PT +SF GE N+V WV+S    N+LQVLDP L   + +  ++ Q+I     
Sbjct: 904  LLELFTGKSPTCDSFKGEQNLVGWVQSAFSSNILQVLDPVLLLPVDNWYHDDQSIISEIQ 963

Query: 878  HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKTK 928
            +DCLIT+   VGLSCT ESP  RI +R+AL +LK++++ LL   VPN K K
Sbjct: 964  NDCLITVC-EVGLSCTAESPDRRISMRDALLKLKAARDNLL-NYVPNYKVK 1012

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573058|ref|XP_002527459.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533194|gb|EEF34951.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/991 (57%), Positives = 698/991 (70%), Gaps = 95/991 (9%)

Query: 21  SASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSS 80
           S ++ I TDKEAL++FKS +  E P  P   WN +SSPC W GV CN F +RVIGLNLSS
Sbjct: 2   SVALSIETDKEALLAFKSNL--EPPGLP--SWNQNSSPCNWTGVSCNRFNHRVIGLNLSS 57

Query: 81  FGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNIS 140
             + G+ISP+IGNLSFLRS+QLQNN L G +P EI NLFRL  +N+S N+LQG +  N+S
Sbjct: 58  LDISGSISPYIGNLSFLRSLQLQNNHLRGTIPDEICNLFRLTAMNLSSNSLQGSISSNLS 117

Query: 141 KLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL--------- 191
           KL++L +LDL  NKITG++ + +L +L  LQVLN G+N+L G+IPPSIANL         
Sbjct: 118 KLSDLTVLDLSMNKITGKIPE-ELTSLTKLQVLNLGRNVLSGAIPPSIANLSSLEDLILG 176

Query: 192 -------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDV 244
                  IPSDLSRL NLKVLDLTIN L G+VPS IYNM+SLV L LASNQL GE+P DV
Sbjct: 177 TNTLSGIIPSDLSRLHNLKVLDLTINNLTGSVPSNIYNMSSLVTLALASNQLWGELPSDV 236

Query: 245 RDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI 304
             TLPNLL F +C N+FTG IPGSLHNLTNI++IRM HNLLEGT+PPGLGNLPFL  YNI
Sbjct: 237 GVTLPNLLVFNFCINKFTGTIPGSLHNLTNIKVIRMAHNLLEGTVPPGLGNLPFLEMYNI 296

Query: 305 GFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNH 364
           GFN IVSSGD +GL FI SLTNST L +LA DGN+ +G IPESIGN S +L +LY+G N 
Sbjct: 297 GFNNIVSSGD-KGLDFIASLTNSTRLKFLAFDGNRLQGVIPESIGNLSKDLLQLYMGENQ 355

Query: 365 IYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANL 424
           IYG IPASIG L  LTLL+LSYNSI+G IP EIGQL+ LQ LGLAGN+  G IP+SL NL
Sbjct: 356 IYGGIPASIGHLSGLTLLNLSYNSITGSIPREIGQLEHLQFLGLAGNQFSGSIPDSLGNL 415

Query: 425 KKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR------------- 471
           +KLNQIDLS N L G IP +FGNFQSLL++DLSNN++NG+I K IL              
Sbjct: 416 RKLNQIDLSRNGLVGAIPTTFGNFQSLLAMDLSNNKLNGSIAKEILNLPSLSKILNLSNN 475

Query: 472 ----PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAE 527
                L E+I  LE+VVTIDLS+N LSG++P+ +KNC+SLEEL M+ N FSGP+P ++ E
Sbjct: 476 FLSGNLSEDIGLLESVVTIDLSNNHLSGDIPSLIKNCESLEELYMSRNSFSGPVPAVLGE 535

Query: 528 LKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
           +KGLE LDLS N LSG IP DLQ L+AL+ LNL FN+LEG VP  G+F N+S VHL+GN 
Sbjct: 536 MKGLETLDLSYNHLSGFIPPDLQKLEALQLLNLAFNDLEGAVPCGGVFTNISKVHLEGNT 595

Query: 588 KLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAK-RVGVSALFKV 646
           KL L+L C+NPRS  + ++ +SI++ + A +A C  I + + +R+ K K     + L K 
Sbjct: 596 KLSLELSCKNPRSRRTNVVKISIVIAVTATLAFCLSIGYLLFIRRSKGKIECASNNLIKE 655

Query: 647 CHPKISYDELRRATGNFSHENLIGSGSFGS---------------VLHNERTGSWKSFIA 691
               +SY ELR+AT NF  +NLIGSG FGS               VL  ++TG WKSF+A
Sbjct: 656 QRQIVSYHELRQATDNFDEQNLIGSGGFGSVYKGFLADGSAVAVKVLDIKQTGCWKSFVA 715

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           ECE LRNVRHRNLVKLITSCSS+D KN+EFLALVYEFL NGSL DWI G+RK E      
Sbjct: 716 ECEALRNVRHRNLVKLITSCSSIDFKNVEFLALVYEFLGNGSLEDWIKGKRKKENGDGLN 775

Query: 746 --------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                   +D  SA+DYLH DCEVPVVH DLKP N+LL E+MTAKVGDFGLA  L+E++ 
Sbjct: 776 LMERLNVVIDAASAMDYLHYDCEVPVVHCDLKPSNVLLKEDMTAKVGDFGLATLLVEKIG 835

Query: 798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEFN 842
            Q+SISSTHV      +   EYGLG +PSTAGDV               PT +SF GE N
Sbjct: 836 IQTSISSTHVXX----HDDAEYGLGVKPSTAGDVYSFGVMLLELFTGKSPTCDSFKGEQN 891

Query: 843 IVKWVESNLPENVLQVLDPELRQLMTS--NESQTI---QLHDCLITIIGSVGLSCTTESP 897
           +V WV+S    N+LQVLDP L   + +  ++ Q+I     +DCLIT+   VGLSCT ESP
Sbjct: 892 LVGWVQSAFSSNILQVLDPILLLPVDNWYDDDQSIISEIQNDCLITVC-EVGLSCTAESP 950

Query: 898 GGRIGIREALRRLKSSQEILLKQQVPNGKTK 928
             RI +R+AL +LK++++ LL   VPN K K
Sbjct: 951 ERRISMRDALLKLKAARDNLL-NYVPNHKVK 980

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519429|ref|XP_003630003.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355524025|gb|AET04479.1| Receptor protein kinase-like protein [Medicago truncatula]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/991 (53%), Positives = 672/991 (67%), Gaps = 78/991 (7%)

Query: 1   MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSP-LSYWNPSSSPC 59
           +HFA L + +H   L  G  S ++ I TDKEAL+  KSQ+S  + S P LS W  +SSPC
Sbjct: 9   LHFALLMIFIHFNNLLVGVSSTTLSITTDKEALILLKSQLSNNNTSPPPLSSWIHNSSPC 68

Query: 60  TWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLF 119
            W GV+C+    RV  L+LS FGL G +SP+IGN+S L+S+QLQ+N+ +G +P +I NL+
Sbjct: 69  NWTGVLCDKHNQRVTSLDLSGFGLSGNLSPYIGNMSSLQSLQLQDNQFTGFIPEQITNLY 128

Query: 120 RLRVLNISFNNLQGEL-PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
            LRVLN+S N  +G + P N++ L EL++LDL +NKI  R+ +  + +L+ LQVL  GKN
Sbjct: 129 NLRVLNMSSNRFEGIMFPSNLTNLDELQILDLSSNKIVSRIPE-HISSLKMLQVLKLGKN 187

Query: 179 LLWGSIPPSIANLIP-SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG 237
             +G+IP S+ N+    ++SRL NL  LDL +N L GTVP  IYN++SLV+L LASN   
Sbjct: 188 SFYGTIPQSLGNISTLKNISRLHNLIELDLILNNLTGTVPPVIYNLSSLVNLPLASNSFS 247

Query: 238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP 297
           GEIPYDV   LP LL F +CFN+FTG+IPGSLHNLTNI++IRM  N LEGT+PPGLGNLP
Sbjct: 248 GEIPYDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMASNHLEGTVPPGLGNLP 307

Query: 298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSK 357
           FL  YNIG+N+IV++G + GL FITSLTNSTHLN+LA+DGN  EG I E+IGN S ELS 
Sbjct: 308 FLHMYNIGYNRIVNAGVN-GLDFITSLTNSTHLNFLAIDGNMVEGVISETIGNLSKELSI 366

Query: 358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGI 417
           LY+G N   G IP SIGRL  L LL+L YNS SGEIP E+GQL+ LQ L L GN+I G I
Sbjct: 367 LYMGENRFNGSIPLSIGRLSGLKLLNLQYNSFSGEIPNELGQLEELQELYLDGNKITGAI 426

Query: 418 PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR------ 471
           PNSL NL  LN+IDLS N L G IPISFGNFQ+LL +DLS+N++NG+IP  IL       
Sbjct: 427 PNSLGNLINLNKIDLSRNLLVGRIPISFGNFQNLLYMDLSSNKLNGSIPAEILNLPTLSN 486

Query: 472 -----------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
                      P+P ++ +L  + +ID S+N L G++P+S  +C SLE+L +A N  SG 
Sbjct: 487 VLNLSMNLLSGPIP-QVGKLTTIASIDFSNNQLYGSIPSSFSSCLSLEKLFLARNMLSGS 545

Query: 521 IPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
           IP  + E++ LE LDLSSN L+G IP +LQ+LQ LR LNL++N+LEG +PS G+F+N+SN
Sbjct: 546 IPKALGEVRALETLDLSSNLLTGPIPIELQSLQVLRLLNLSYNDLEGDIPSGGVFQNLSN 605

Query: 581 VHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGV 640
           VHL+GN KLCLQ  C  P+ H    + L II+ I+  +  C  I   + ++  K K    
Sbjct: 606 VHLEGNKKLCLQFSCV-PQVHRRSHVRLYIIIAIVVTLVLCLAIGLLLYMKYSKVKVTAT 664

Query: 641 SALFKVCH--PKISYDELRRATGNFSHENLIGSGSFGS----------------VLHNER 682
           SA  ++    P +SYDELR AT  FS ENLIG GSFGS                VL   R
Sbjct: 665 SASGQIHRQGPMVSYDELRLATEEFSQENLIGIGSFGSVYKGHLSQGNSTTAVKVLDTLR 724

Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
           TGS KSF AECE ++N RHRNLVKLITSCSS+D +N +FLALVYE+LSNGSL DWI G R
Sbjct: 725 TGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFRNNDFLALVYEYLSNGSLEDWIKG-R 783

Query: 743 KNE---------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG 787
           KN                +D+  ALDYLHND E P+ H DLKP NILLDE+MTAKVGDFG
Sbjct: 784 KNHANGNGLNLMERLNIAIDVALALDYLHNDSETPIAHCDLKPSNILLDEDMTAKVGDFG 843

Query: 788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------P 832
           LAR L++R  NQ SISSTHV  GSIGY+PPEYG GE+PS AGDV               P
Sbjct: 844 LARLLIQRSTNQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLELFSGKSP 903

Query: 833 TSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT---IQLHDCLITIIGSVG 889
             + F G   I KWV+S      +QV+DP+L  L++ ++S T   +QLH C+  I+G VG
Sbjct: 904 QDDCFTGGLGITKWVQSAFKNKTVQVIDPQLLSLISHDDSATDSNLQLH-CVDAIMG-VG 961

Query: 890 LSCTTESPGGRIGIREALRRLKSSQEILLKQ 920
           +SCT ++P  RIGIR A+R+LK++++ LLK+
Sbjct: 962 MSCTADNPDERIGIRVAVRQLKAARDSLLKK 992

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528416|ref|XP_003532799.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Glycine max]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/988 (53%), Positives = 676/988 (68%), Gaps = 91/988 (9%)

Query: 15   LPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVI 74
            L  G  SA++ I TD+EAL+SFKSQ+S E+  SPLS WN +SSPC W GV+C+  G RV 
Sbjct: 25   LLIGVSSATLSITTDREALISFKSQLSNEN-LSPLSSWNHNSSPCNWTGVLCDRLGQRVT 83

Query: 75   GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE 134
            GL+LS +GL G +SP++GNLS L+S+QLQNN+  G +P +IGNL  L+VLN+S+N L+G+
Sbjct: 84   GLDLSGYGLSGHLSPYVGNLSSLQSLQLQNNQFRGVIPDQIGNLLSLKVLNMSYNMLEGK 143

Query: 135  LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL--- 191
            LP NI+ L EL++LDL +NKI  ++ +D + +L+ LQ L  G+N L+G+IP S+ N+   
Sbjct: 144  LPSNITHLNELQVLDLSSNKIVSKIPED-ISSLQKLQALKLGRNSLFGAIPASLGNISSL 202

Query: 192  -------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGG 238
                         IPS+L RL +L  LDL++N L GTVP  IYN++SLV+  LASN   G
Sbjct: 203  KNISFGTNFLTGWIPSELGRLHDLIELDLSLNHLNGTVPPAIYNLSSLVNFALASNSFWG 262

Query: 239  EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
            EIP DV   LP L+ F  CFN FTG+IPGSLHNLTNIQ+IRM  N LEG++PPGLGNLPF
Sbjct: 263  EIPQDVGHKLPKLIVFCICFNYFTGRIPGSLHNLTNIQVIRMASNHLEGSVPPGLGNLPF 322

Query: 299  LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL 358
            L TYNI +N IVSSG   GL FITSLTNSTHLN+LA+DGN  EG IPE+IGN S +LS L
Sbjct: 323  LCTYNIRYNWIVSSGV-RGLDFITSLTNSTHLNFLAIDGNMLEGVIPETIGNLSKDLSTL 381

Query: 359  YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP 418
            Y+G N   G IP+SIGRL  L LL+LSYNSISGEIP E+GQL+ LQ L LAGNEI GGIP
Sbjct: 382  YMGQNRFNGSIPSSIGRLSGLKLLNLSYNSISGEIPQELGQLEELQELSLAGNEISGGIP 441

Query: 419  NSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR------- 471
            + L NL KLN +DLS N+L G IP SFGN Q+LL +DLS+N++NG+IP  IL        
Sbjct: 442  SILGNLLKLNLVDLSRNKLVGRIPTSFGNLQNLLYMDLSSNQLNGSIPMEILNLPTLSNV 501

Query: 472  ----------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI 521
                      P+P E+ RL +V +ID S+N L G +P+S  NC SLE+L +  NQ SGPI
Sbjct: 502  LNLSMNFLSGPIP-EVGRLSSVASIDFSNNQLYGGIPSSFSNCLSLEKLFLPRNQLSGPI 560

Query: 522  PNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNV 581
            P  + +++GLE LDLSSN+LSG+IP +LQNL  L+ LNL++N++EG +P  G+F+N+S V
Sbjct: 561  PKALGDVRGLETLDLSSNQLSGTIPIELQNLHGLKLLNLSYNDIEGAIPGAGVFQNLSAV 620

Query: 582  HLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVS 641
            HL+GN KLCL   C  P   G + I L I++ I   +  C  I   + +  +K K   V+
Sbjct: 621  HLEGNRKLCLHFSCM-PHGQGRKNIRLYIMIAITVTLILCLTIGLLLYIENKKVKVAPVA 679

Query: 642  AL--FKVCHPKISYDELRRATGNFSHENLIGSGSFGS---------------VLHNERTG 684
                 K   P ISYDEL  AT  FS ENL+G GSFGS               VL   RTG
Sbjct: 680  EFEQLKPHAPMISYDELLLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTG 739

Query: 685  SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN 744
            S KSF AECE ++N RHRNLVKLITSCSS+D KN +FLALVYE+L NGSL DWI G RK+
Sbjct: 740  SLKSFFAECEAMKNSRHRNLVKLITSCSSIDFKNNDFLALVYEYLCNGSLDDWIKGRRKH 799

Query: 745  E--------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            E              LD+  ALDYLHND E+PVVH DLKP NILLDE+MTAKVGDFGLAR
Sbjct: 800  EKGNGLNLMERLNIALDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLAR 859

Query: 791  FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSE 835
             L++R  +Q SISST V  GSIGY+PPEYG GE+PS AGDV               PT E
Sbjct: 860  LLIQRSTSQVSISSTRVLRGSIGYIPPEYGWGEKPSAAGDVYSFGIVLLEMFSGKSPTDE 919

Query: 836  SFAGEFNIVKWVESNLPENVLQVLDPELRQLM-----TSNESQTIQLHDCLITIIGSVGL 890
             F G+ +I +WV+S+  + ++QV+DP+L  L+     +  E   +QL+ C+ +I+G VG+
Sbjct: 920  CFTGDLSIRRWVQSSCKDKIVQVIDPQLLSLIFNDDPSEGEGPILQLY-CVDSIVG-VGI 977

Query: 891  SCTTESPGGRIGIREALRRLKSSQEILL 918
            +CTT +P  RIGIREA+RRLK++++ LL
Sbjct: 978  ACTTNNPDERIGIREAVRRLKAARDSLL 1005

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519427|ref|XP_003630002.1| Kinase-like protein [Medicago truncatula] gi|355524024|gb|AET04478.1| Kinase-like protein [Medicago truncatula]

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/1001 (51%), Positives = 662/1001 (66%), Gaps = 91/1001 (9%)

Query: 1    MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSP-LSYWNPSSSPC 59
            +HFA L + +H   L  G  S ++ I TDKEAL+  KSQ+S  + S P LS W  +SSPC
Sbjct: 19   LHFALLMIFIHFNNLLVGVSSTTLSITTDKEALILLKSQLSNNNTSPPPLSSWIHNSSPC 78

Query: 60   TWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLF 119
             W GV+C+    RV  L+LS FGL G +SP+IGN+S L+S+QLQ+N+ +G +P +I NL+
Sbjct: 79   NWTGVLCDKHNQRVTSLDLSGFGLSGNLSPYIGNMSSLQSLQLQDNQFTGFIPEQITNLY 138

Query: 120  RLRVLNISFNNLQGEL-PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
             LRVLN+S N  +G + P N++ L EL++LDL +NKI  R+ +  + +L+ LQVL  GKN
Sbjct: 139  NLRVLNMSSNRFEGIMFPSNLTNLDELQILDLSSNKIVSRIPE-HISSLKMLQVLKLGKN 197

Query: 179  LLWGSIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYN 222
              +G+IP S+ N+                IPSDL RL NL  LDLT+N L GTVP  IYN
Sbjct: 198  SFYGTIPQSLGNISTLKNISFGTNSLSGWIPSDLGRLHNLIELDLTLNNLTGTVPPVIYN 257

Query: 223  MTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTH 282
            ++SLV+L LA+N   GEIPYDV   LP LL F +CFN+FTG+IPGSLHNLTNI++IRM  
Sbjct: 258  LSSLVNLALAANSFWGEIPYDVGHLLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMAS 317

Query: 283  NLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEG 342
            N LEG +PPGLGNLPFL  YNIG+N+IV++G + GL FITSLTNSTHLN+LA+DGN  +G
Sbjct: 318  NHLEGIVPPGLGNLPFLHMYNIGYNRIVTTGVN-GLDFITSLTNSTHLNFLAIDGNMLKG 376

Query: 343  KIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG 402
             IPE+IGN S ELS LY+G N   G IP+SI RL  L LL+LSYNSISG+IP E+GQL  
Sbjct: 377  VIPETIGNLSKELSILYMGENRFNGSIPSSISRLSGLKLLNLSYNSISGDIPKELGQLDE 436

Query: 403  LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
            LQ L L GN+I G IPNSL NL KLN+IDLS NEL G IP+SFGNFQ+LL +DLS+N++N
Sbjct: 437  LQGLYLDGNKISGDIPNSLGNLIKLNKIDLSRNELVGRIPVSFGNFQNLLYMDLSSNKLN 496

Query: 463  GNIPKGILR-----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK 505
            G+IP  IL                  P+P E+ +L  + TID S+N L GN+P+S  NC 
Sbjct: 497  GSIPVEILNIPTLSNVLNLSKNLLSGPIP-EVGQLTTISTIDFSNNQLYGNIPSSFSNCL 555

Query: 506  SLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
            SLE++ ++ N  SG IP  + ++KGLE LDLSSN LSG IP +LQNL  L+ LN+++N+L
Sbjct: 556  SLEKMFLSQNMLSGYIPKALGDVKGLETLDLSSNLLSGPIPIELQNLHVLQLLNISYNDL 615

Query: 566  EGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIV 625
            EG +PS G+F+N+SNVHL+GN KLCL   C  P+ H    +   II+ I+  +  C  I 
Sbjct: 616  EGEIPSGGVFQNVSNVHLEGNKKLCLHFACV-PQVHKRSSVRFYIIIAIVVTLVLCLTIG 674

Query: 626  WPIIVRKRKAKRVGVSAL--FKVCHPKISYDELRRATGNFSHENLIGSGSFG-------- 675
              + ++  K K    S     K   P +SYDELR AT  FS ENLIG GSFG        
Sbjct: 675  LLLYMKYTKVKVTETSTFGQLKPQAPTVSYDELRLATEEFSQENLIGIGSFGKVYKGHLR 734

Query: 676  --------SVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE 727
                     VL   RTG  KSF AECE ++N RHRNLVKLITSCSS+D +N +FLALVYE
Sbjct: 735  QGNSTVAVKVLDTSRTGFLKSFFAECEAMKNSRHRNLVKLITSCSSVDFRNNDFLALVYE 794

Query: 728  FLSNGSLGDWIHGERKNE--------------LDITSALDYLHNDCEVPVVHSDLKPGNI 773
            +LS GSL DWI G R +               +D+  ALDYLHND E P+VH DLKP NI
Sbjct: 795  YLSKGSLEDWIKGRRNHANGNGLNLMERLNIVIDVALALDYLHNDSETPIVHCDLKPSNI 854

Query: 774  LLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV-- 831
            LLDE+MTAKVGDFGLAR L+++  +Q SISSTHV  GSIGY+PPEYG GE+PS AGDV  
Sbjct: 855  LLDEDMTAKVGDFGLARLLIQKSTSQVSISSTHVLRGSIGYIPPEYGWGEKPSAAGDVYS 914

Query: 832  -------------PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES---QTI 875
                         P  + F G   I KWV+S       QV+DP+L  L+  ++S     +
Sbjct: 915  FGIVLLELFCGKSPQDDCFTGGQGITKWVQSAFKNKTAQVIDPQLLSLIFHDDSARDSDL 974

Query: 876  QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI 916
            QL  C+  I+G VGLSCT ++P  RIGIR A+R+L ++ ++
Sbjct: 975  QLR-CVDAIMG-VGLSCTADNPDERIGIRVAVRQLIAASQL 1013

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076934|ref|XP_002305057.1| predicted protein [Populus trichocarpa] gi|222848021|gb|EEE85568.1| predicted protein [Populus trichocarpa]

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/983 (52%), Positives = 670/983 (68%), Gaps = 88/983 (8%)

Query: 20   DSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLS 79
            D+A  G+ TDKEAL+SFKSQ+  + PS+ LS WN +SSPC W  V C+    RVIGL+LS
Sbjct: 27   DAAVPGLFTDKEALLSFKSQVVVD-PSNTLSSWNDNSSPCNWTRVDCSQVHQRVIGLDLS 85

Query: 80   SFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI 139
               L G+ISPHIGNLSFLRS+ LQ N+ +G +P +IG LFRL+VLN+SFN + G +P NI
Sbjct: 86   GLRLTGSISPHIGNLSFLRSLHLQENQFTGVIPDQIGALFRLKVLNMSFNTINGPIPSNI 145

Query: 140  SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIAN--------- 190
            +    L++LDLM N+I+G + + +L NL+SL++L  G N LWG IPP IAN         
Sbjct: 146  TNCLNLQILDLMQNEISGAIPE-ELSNLKSLEILKLGGNELWGMIPPVIANISSLLTLDL 204

Query: 191  -------LIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYD 243
                   +IP+DL RLENLK LDL+IN L G VP ++YN++SLV L +ASNQL G+IP D
Sbjct: 205  VTNNLGGMIPADLGRLENLKHLDLSINNLTGDVPLSLYNISSLVFLAVASNQLRGQIPID 264

Query: 244  VRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYN 303
            V D LPNLL F +C N+F G IP SLHNLTN+Q IRM  NL  G++PP L NLP L  YN
Sbjct: 265  VGDRLPNLLSFNFCINKFNGSIPWSLHNLTNMQSIRMADNLFSGSVPPRLRNLPKLTLYN 324

Query: 304  IGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGN 363
            IG N+I SSGD EGL F++S TNS++L +LA+DGN  EG IPESIGN S  L  LYLG N
Sbjct: 325  IGGNQIKSSGD-EGLDFLSSFTNSSYLKFLAIDGNLLEGLIPESIGNLSRSLRNLYLGRN 383

Query: 364  HIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLAN 423
             IYG IPASI  L SL LL+++YN +SGEIP EIG+L  LQ L LA N+I G IP+SL N
Sbjct: 384  QIYGSIPASIRHLSSLALLNINYNHVSGEIPPEIGELTDLQELHLAANKISGRIPDSLGN 443

Query: 424  LKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR------------ 471
            L+KL +I+LS NEL G +P +F NFQ L S+DLS+NR NG+IPK +              
Sbjct: 444  LQKLIKINLSANELVGRLPTTFVNFQQLQSMDLSSNRFNGSIPKEVFNLSSLSATLNLSS 503

Query: 472  -----PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVA 526
                 PLP+EI RLENV  +D S N LSG++P+++ +CKSLEEL M  N FSG IP  + 
Sbjct: 504  NQLTGPLPQEIRRLENVAAVDFSHNYLSGSIPDTIGSCKSLEELFMGNNMFSGSIPATLG 563

Query: 527  ELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
            ++KGLE+LDLSSN++SG+IP  L+NLQAL  LNL+FNNLEG++P EG FRN+S +H++GN
Sbjct: 564  DVKGLEILDLSSNQISGTIPKTLENLQALLLLNLSFNNLEGLLPKEGAFRNLSRIHVEGN 623

Query: 587  PKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKV 646
             KLCL L C N +        + I++  +A +  C +I   + VRKRK + +  S   K+
Sbjct: 624  SKLCLDLSCWNNQHRQRISTAIYIVIAGIAAVTVCSVIAVFLCVRKRKGEIMPRSDSIKL 683

Query: 647  CHPKISYDELRRATGNFSHENLIGSGSFGS---------------VLHNERTGSWKSFIA 691
             HP ISY ELR ATG+F  ENLIG GSFGS               VL +E+ GSWKSF+A
Sbjct: 684  QHPTISYGELREATGSFDAENLIGKGSFGSVYKGELRDATVVAVKVLDSEKYGSWKSFLA 743

Query: 692  ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN------- 744
            ECE L+NVRHRNL+KLITSCSS+D++ ++F+ALVYE++ NGSL +WI G R+        
Sbjct: 744  ECEALKNVRHRNLIKLITSCSSMDNRGLQFVALVYEYMHNGSLEEWIKGSRRRLDGGLLN 803

Query: 745  -------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                    +D+  A+DYLH+DCEVPVVH DLKP N+L+D++MTAKVGDFGLA+ L ER  
Sbjct: 804  ILERLNVAIDVACAVDYLHHDCEVPVVHCDLKPSNVLVDKDMTAKVGDFGLAKLLAERGA 863

Query: 798  NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEFN 842
            ++ SIS T    GS+GY+PPEYGLG + +T+GDV               PT E F+ + +
Sbjct: 864  DKQSISCTGGLRGSVGYIPPEYGLGLKATTSGDVYSYGVVLLELFTGKSPTHEIFSRDLS 923

Query: 843  IVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL------HDCLITIIGSVGLSCTTES 896
            ++KWV+S  P N+ +V+DPEL  L   +     Q       H+CLI I+G VGLSCT ES
Sbjct: 924  LIKWVKSAFPANIEEVVDPELL-LSIKDFHHGAQFESPEKQHECLIAILG-VGLSCTVES 981

Query: 897  PGGRIGIREALRRLKSSQEILLK 919
            PG RI +R++L +LK +++ LLK
Sbjct: 982  PGQRITMRDSLHKLKKARDTLLK 1004

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450538|ref|XP_004143019.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] gi|449482798|ref|XP_004156407.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1015 (51%), Positives = 678/1015 (66%), Gaps = 97/1015 (9%)

Query: 2    HFATLAVLLHVTWLPFGA----DSASVGINTDKEALMSFKSQISQESPSSPLSYWNP--S 55
            HF   A+ + +  L F +     SA++ ++TDK+AL++ KS      P +PLS WN   +
Sbjct: 7    HFQ-FAIFITIVILKFSSFPTVVSATLNLDTDKQALLAIKSTFQNIRPPNPLSSWNSDQT 65

Query: 56   SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI 115
            SSPC W GV C   G RV+GLNL+ F L G+I PH+GNLSFL S+QLQ+N+++G +P +I
Sbjct: 66   SSPCNWVGVTCTGDGKRVVGLNLTGFLLSGSIDPHLGNLSFLNSLQLQSNQITGQIPHQI 125

Query: 116  GNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNF 175
             NLFRLRVLN+SFNNLQG+LP NIS + +L++LDL +NKI GR+ D +L  L  LQVLN 
Sbjct: 126  TNLFRLRVLNVSFNNLQGQLPSNISNMVDLEILDLTSNKINGRLPD-ELSRLNKLQVLNL 184

Query: 176  GKNLLWGSIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPST 219
             +N L+GSIPPS  NL                +P+ L+ L NLK L +TIN L+GTVP  
Sbjct: 185  AQNQLYGSIPPSFGNLSSIVTINLGTNSINGPLPTQLAALPNLKHLIITINNLSGTVPPP 244

Query: 220  IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIR 279
            I+NM+SLV L LASNQL G  P D+ + LPNLL F +CFN+FTG IP SLHN+T IQ+IR
Sbjct: 245  IFNMSSLVTLALASNQLWGTFPKDIGEKLPNLLVFNFCFNKFTGTIPESLHNITKIQVIR 304

Query: 280  MTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQ 339
              HN LEGT+P GL  L  L  YNIG+NK V S  + GL FITSLTNS+ L +LALDGN 
Sbjct: 305  FAHNFLEGTVPAGLEKLHNLSMYNIGYNKFVGSDTNGGLDFITSLTNSSRLAFLALDGNN 364

Query: 340  FEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQ 399
            FEG IP+SIGN S +LSKLY+G N  YG IP++I  L+ L+LL+LS NS+SGEIP +IG+
Sbjct: 365  FEGVIPDSIGNLSKDLSKLYMGENRFYGNIPSTISNLQGLSLLNLSDNSLSGEIPSQIGK 424

Query: 400  LQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNN 459
            L+ LQ+LGLA N++ G IP SL +L+ LNQIDLSGN+L G IP SFGN+ +LLS+DLS N
Sbjct: 425  LEKLQMLGLARNQLSGRIPTSLGDLRMLNQIDLSGNDLVGNIPTSFGNYMNLLSLDLSKN 484

Query: 460  RINGNIPKGILR-----------------PLPEEISRLENVVTIDLSDNSLSGNLPNSLK 502
            ++NG+IP+  L                  PLPEEI  LENVVTID+S+N   GN+P+S+ 
Sbjct: 485  KLNGSIPRATLALPGLSKILNLSNNFFSGPLPEEIGSLENVVTIDISNNHFFGNIPSSIS 544

Query: 503  NCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTF 562
             CKSLE L+MA N+FSGPIP    +L+GL++LDLSSN+LSG IP + Q L+AL++LNL+F
Sbjct: 545  GCKSLEALIMANNEFSGPIPRTFEDLRGLQILDLSSNRLSGPIPREFQQLKALQTLNLSF 604

Query: 563  NNLEGVVPSEGIFRNMSNVHLKGNPKLC--LQLGCENPRS-HGSRLIILSIIVTIMAVIA 619
            N+LEG+VP+E    N++N++L+GNPKLC  L L C   ++      I++  +++ +  I+
Sbjct: 605  NDLEGIVPTE--LENITNLYLQGNPKLCDELNLSCAVTKTKEKVIKIVVVSVLSAVLAIS 662

Query: 620  GCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGS--- 676
              F  V  ++ RK K K    S L K     ISY EL  AT NFS ENLIG GSFG+   
Sbjct: 663  IIFGTVTYLMRRKSKDKSFQSSELVKGMPEMISYRELCLATQNFSSENLIGKGSFGTVYR 722

Query: 677  ------------VLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL 724
                        VL+ ER GS +SF+AECE LRNVRHRNLVKLITSCSS+D K  EFLAL
Sbjct: 723  GYLEQGTAIAVKVLNMERAGSVRSFLAECEALRNVRHRNLVKLITSCSSIDFKRKEFLAL 782

Query: 725  VYEFLSNGSLGDWIHG-------------ERKN-ELDITSALDYLHNDCEVPVVHSDLKP 770
            VYEFLSNGSL  WIH              ER N  +D+ S LDYLHN  +VP+VH DLKP
Sbjct: 783  VYEFLSNGSLDSWIHKHKLHADGSGLNLIERLNIAIDVASVLDYLHNGYDVPIVHCDLKP 842

Query: 771  GNILLDEEMTAKVGDFGLARFLLERVDNQ-SSISSTHVFMGSIGYVPPEYGLGERPSTAG 829
             NI+L EEMTAKVGDFGLAR L+E  +NQ SSI+S+HV  GSIGYVPPEYG+G +P+TAG
Sbjct: 843  SNIILSEEMTAKVGDFGLARLLMEGGNNQSSSITSSHVLKGSIGYVPPEYGVGRKPTTAG 902

Query: 830  DV---------------PTSESFAGEFNIVKWVESNLPENVLQVLDPEL-----RQLMTS 869
            DV               PT ESF+G+ N++KWV+   P+++ +++D  L     +     
Sbjct: 903  DVYSFGVTLMELFTGKCPTHESFSGDLNLIKWVQLAYPKDMDEIMDTTLLESGSKLYYEE 962

Query: 870  NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPN 924
             E  + + +DC   ++ SV L CT +SP  R  +++ L +L+  +  L++    N
Sbjct: 963  QEIDSTKQYDCFTDVM-SVALCCTVDSPEKRSCMKDVLLKLQMIRATLIRSSNAN 1016

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450542|ref|XP_004143021.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus] gi|449482805|ref|XP_004156409.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cucumis sativus]

 Score =  942 bits (2436), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/983 (52%), Positives = 667/983 (67%), Gaps = 86/983 (8%)

Query: 19  ADSASVGINTDKEALMSFKSQISQESPSSPLSYW-NPSSSPCTWPGVICNNFGNRVIGLN 77
            +SA + I TDK+AL+S KS  +  +PS+PLS W NP+SSPC W  V CN  GNRVIGL+
Sbjct: 2   VESARLSIETDKQALISIKSGFTNLNPSNPLSSWDNPNSSPCNWTRVSCNKKGNRVIGLD 61

Query: 78  LSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPV 137
           LSS  + G++ PHIGNL+FL S+QLQNN L+G +P +I  LFRL +LN+SFN+L+G  P 
Sbjct: 62  LSSLKISGSLDPHIGNLTFLHSLQLQNNLLTGPIPHQISKLFRLNLLNMSFNSLEGGFPS 121

Query: 138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL------ 191
           NIS +  L++LDL +N IT  + + +L  L +L+VL   +N ++G IPPS  NL      
Sbjct: 122 NISAMAALEILDLTSNNITSTLPN-ELSLLTNLKVLKLAQNHIFGEIPPSFGNLSSLVTI 180

Query: 192 ----------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
                     IP++LSRL NLK L +TIN L GTVP  IYNM+SLV L LASN+L G  P
Sbjct: 181 NFGTNSLTGPIPTELSRLPNLKDLIITINNLTGTVPPAIYNMSSLVTLALASNKLWGTFP 240

Query: 242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
            D+ DTLPNLL F +CFN FTG IP SLHN+TNIQIIR  +N LEGT+PPGL NL  L  
Sbjct: 241 MDIGDTLPNLLVFNFCFNEFTGTIPPSLHNITNIQIIRFAYNFLEGTVPPGLENLHNLIM 300

Query: 302 YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
           YNIG+NK+  S D +G+SFITSLT S+ L++LA+DGN FEG+IPESIGN S  LS L++G
Sbjct: 301 YNIGYNKL--SSDKDGISFITSLTKSSRLSFLAIDGNNFEGQIPESIGNLSKSLSILFMG 358

Query: 362 GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
           GN + G IP +IG L  L LL+LSYNS+SGEIP EIGQL+ LQ L LA N+  G IP++L
Sbjct: 359 GNRLSGNIPHTIGNLNGLALLNLSYNSLSGEIPSEIGQLENLQSLVLAKNQFSGWIPSTL 418

Query: 422 ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR---------- 471
            NL+KL  +DLS NEL G +P SF NFQ LLS+DLSNN++NG+IPK  L           
Sbjct: 419 GNLQKLTNLDLSRNELIGGVPTSFNNFQKLLSMDLSNNKLNGSIPKEALNLPSSIRLNMS 478

Query: 472 ------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIV 525
                 PLPEEI  L N+  IDLS N +SG +P+S+K  KS+E+L MA N+ SG IPN +
Sbjct: 479 NNLLTGPLPEEIGYLANLFQIDLSTNLISGEIPSSIKGWKSIEKLFMARNKLSGHIPNSI 538

Query: 526 AELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKG 585
            ELK ++++DLSSN LSG IP +LQ L AL+ LNL+FN+LEG VP  GIF + +NV L+G
Sbjct: 539 GELKAIQIIDLSSNLLSGPIPDNLQYLAALQYLNLSFNDLEGEVPKGGIFESRANVSLQG 598

Query: 586 NPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFK 645
           N KLC    C+   S  ++ + + I+  + + +A CF+I   I   ++K+K V  + L  
Sbjct: 599 NSKLCWYSSCKKSDSKHNKAVKVIILSAVFSTLALCFIIGTLIHFLRKKSKTVPSTELLN 658

Query: 646 VCHPKISYDELRRATGNFSHENLIGSGSFGS---------------VLHNERTGSWKSFI 690
             H  +SYDELR AT NFS +NLIG GSFGS               VL   RTGS +SF 
Sbjct: 659 SKHEMVSYDELRLATENFSEKNLIGKGSFGSVYKGMLKEDIPVAIKVLDVNRTGSLRSFK 718

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----- 745
           AECE LRNVRHRNLV+LIT+CSS+D  NMEF AL+YE LSNGSL +W+HG+R +E     
Sbjct: 719 AECEALRNVRHRNLVRLITTCSSIDFSNMEFRALIYELLSNGSLDEWVHGQRSHEYGIGL 778

Query: 746 ---------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
                    +D+ SA++YLH+DCE+P+VH DLKP N+LLDE MTAKVGDFGLAR L+E  
Sbjct: 779 NILERVNIAIDVASAINYLHHDCELPIVHCDLKPSNVLLDENMTAKVGDFGLARLLMENK 838

Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEF 841
           + QSSI+STHV  GSIGY+PPEYG G +P+TAGDV               PT E F GE 
Sbjct: 839 NAQSSITSTHVLKGSIGYLPPEYGFGVKPTTAGDVYSFGVTLLELFTGKSPTDECFTGEL 898

Query: 842 NIVKWVESNLPENVLQVLDPELRQLMTS--NESQTI---QLHDCLITIIGSVGLSCTTES 896
           N++KWVES+ PE++++V+D +L +L        +TI      DCL  +IG V LSCT  +
Sbjct: 899 NLIKWVESSYPEDIMEVIDHKLPELFVDLVYRGRTIGSDMQKDCLTKVIG-VALSCTVNT 957

Query: 897 PGGRIGIREALRRLKSSQEILLK 919
           P  RI + +A+ +L+S+++ L++
Sbjct: 958 PVNRIDMEDAVSKLRSAKDNLIR 980

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511039|ref|XP_003524239.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/985 (53%), Positives = 670/985 (68%), Gaps = 95/985 (9%)

Query: 18   GADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLN 77
            G  SA++ I++D+EAL+SFKS++S ++  +PLS WN +SSPC W GV+C+  G RV GL+
Sbjct: 28   GVSSATLSISSDREALISFKSELSNDT-LNPLSSWNHNSSPCNWTGVLCDKHGQRVTGLD 86

Query: 78   LSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPV 137
            LS  GL G +SP+IGNLS L+S+QLQNN+L+G +P +IGNLF LR+LN+S N L+G+LP 
Sbjct: 87   LSGLGLSGHLSPYIGNLSSLQSLQLQNNQLTGVIPDQIGNLFNLRLLNMSTNMLEGKLPS 146

Query: 138  NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL------ 191
            N + L +L++LDL +NKI  ++ +D + +L+ LQ L  G+N L+G+IP SI N+      
Sbjct: 147  NTTHLKQLQILDLSSNKIASKIPED-ISSLQKLQALKLGRNSLYGAIPASIGNISSLKNI 205

Query: 192  ----------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
                      IPSDL RL NL  LDLT+N L GTVP  IYN++SLV+L LA+N L GEIP
Sbjct: 206  SFGTNFLTGWIPSDLGRLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSLWGEIP 265

Query: 242  YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
             DV   LP LL F +CFN+FTG IPGSLHNLTNI++IRM  NLLEGT+PPGLGNLPFLR 
Sbjct: 266  QDVGQKLPKLLVFNFCFNKFTGGIPGSLHNLTNIRVIRMASNLLEGTVPPGLGNLPFLRM 325

Query: 302  YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
            YNIG+N+IVSSG   GL FITSLTNSTHLN+LA+DGN  EG IPESIGN S +L+KLY+G
Sbjct: 326  YNIGYNRIVSSGV-RGLDFITSLTNSTHLNFLAIDGNMLEGVIPESIGNLSKDLTKLYMG 384

Query: 362  GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
             N   G IP+SIGRL  L LL+LSYNSI G+IP E+GQL+GLQ L LAGNEI GGIPNSL
Sbjct: 385  QNRFNGSIPSSIGRLSGLKLLNLSYNSIFGDIPNELGQLEGLQELSLAGNEISGGIPNSL 444

Query: 422  ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR---------- 471
             NL KLNQIDLS N+L G IP SFGN Q+LL +DLS+N+++G+IP  IL           
Sbjct: 445  GNLLKLNQIDLSKNKLVGRIPTSFGNLQNLLYMDLSSNKLDGSIPMEILNLPTLSNVLNL 504

Query: 472  -------PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI 524
                   P+P +I RL  V +ID S N L G +P+S  NC SLE L +A NQ SGPIP  
Sbjct: 505  SMNFLSGPIP-QIGRLITVASIDFSSNQLFGGIPSSFSNCLSLENLFLARNQLSGPIPKA 563

Query: 525  VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLK 584
            + ++KGLE LDLSSN+L G+IP +LQNL  L+ LNL++N+LEGV+PS G+F+N+S +HL+
Sbjct: 564  LGDVKGLETLDLSSNQLFGAIPIELQNLHVLKFLNLSYNDLEGVIPSGGVFQNLSAIHLE 623

Query: 585  GNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSAL- 643
            GN KLCL   C  P  HG R   L II+ I+  +  C  I   + ++ ++ K    +A  
Sbjct: 624  GNRKLCLYFPCM-PHGHG-RNARLYIIIAIVLTLILCLTIGLLLYIKNKRVKVTATAATS 681

Query: 644  --FKVCHPKISYDELRRATGNFSHENLIGSGSFGS---------------VLHNERTGSW 686
               K   P +SYDELR AT  FS ENL+G GSFGS               VL   RTGS 
Sbjct: 682  EQLKPHVPMVSYDELRLATEEFSQENLLGVGSFGSVYKGHLSHGATVAVKVLDTLRTGSL 741

Query: 687  KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN-- 744
            KSF AECE ++N RHRNLVKLITSCSS+D KN +FLALVYE+L NGSL DWI G R +  
Sbjct: 742  KSFFAECEAMKNSRHRNLVKLITSCSSVDFKNNDFLALVYEYLCNGSLEDWIKGRRNHAN 801

Query: 745  ------------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                         +D+  ALDYLHND E+PVVH DLKP NILLDE+MTAKVGDFGLAR L
Sbjct: 802  GNGLNLMERLNIAIDVACALDYLHNDSEIPVVHCDLKPSNILLDEDMTAKVGDFGLARSL 861

Query: 793  LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESF 837
            ++   NQ SISSTH    S      EYG GE+PS AGDV               PT E F
Sbjct: 862  IQNSTNQVSISSTHYCYLS----NAEYGWGEKPSAAGDVYSFGIVLLELFSGKSPTDECF 917

Query: 838  AGEFNIVKWVESNLPENVLQVLDPELRQLMTSN---ESQTIQLHDCLITIIGSVGLSCTT 894
             G  +I +WV+S +    +QV+DP+L  L   +   E   +QL+    T+   VG+SCT 
Sbjct: 918  TGGLSIRRWVQSAMKNKTVQVIDPQLLSLTFHDDPSEGPNLQLNYLDATV--GVGISCTA 975

Query: 895  ESPGGRIGIREALRRLKSSQEILLK 919
            ++P  RIGIR+A+R+LK++++ LLK
Sbjct: 976  DNPDERIGIRDAVRQLKAARDSLLK 1000

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147843793|emb|CAN83727.1| hypothetical protein VITISV_043616 [Vitis vinifera]

 Score =  884 bits (2285), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/977 (52%), Positives = 650/977 (66%), Gaps = 112/977 (11%)

Query: 1   MHFATLAVLLHVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCT 60
           +H+A  AVLL          SAS+ +NTDKEAL+SFK  +S ES  +  S+   +SSPC 
Sbjct: 7   LHYAVFAVLLSSLSSFRIVCSASLSLNTDKEALLSFKYHLSSESSETLSSWNVNNSSPCN 66

Query: 61  WPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR 120
           W GV+CN   +RVIGL+LS FGL GTISPHIGNLSFL S++LQ+N+L+G +P ++G+L R
Sbjct: 67  WTGVLCNESRDRVIGLDLSGFGLTGTISPHIGNLSFLSSLELQDNQLTGTIPDQVGDLSR 126

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
           L VLN+S N+++G +P+NI+   EL++LDL  N+I+G +   +L  LR+L++L  G N L
Sbjct: 127 LSVLNMSSNHIRGAIPLNITMCLELEILDLKENEISGTIPA-ELGRLRNLEILKLGSNQL 185

Query: 181 WGSIPPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMT 224
            G IPPSI+NL                IP DL RL+NLK LDLTIN+L GTVPS+IYN+T
Sbjct: 186 VGDIPPSISNLSSLDTLSLGTNNLGGRIPDDLGRLQNLKELDLTINQLEGTVPSSIYNIT 245

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
           SLV+L +ASN L GEIP DV D LPNLL F +C N+FTG IPGSLHNLTNI +IRM HNL
Sbjct: 246 SLVNLAVASNNLWGEIPSDVGDRLPNLLIFNFCINKFTGGIPGSLHNLTNINVIRMAHNL 305

Query: 285 LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI 344
           LEG++P GLGNLP LR YNIG+N+I SSGD +GL FITSLTNSTHLN+LA+DGN  EG I
Sbjct: 306 LEGSVPSGLGNLPQLRMYNIGYNRIKSSGD-QGLDFITSLTNSTHLNFLAIDGNFLEGVI 364

Query: 345 PESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ 404
           PESIGN S  L+ L++G N IYG IP SI  L SL LL+LS+N ISGEIP EIG+L  +Q
Sbjct: 365 PESIGNLSTSLASLHMGQNKIYGSIPXSISHLSSLALLNLSHNLISGEIPPEIGELGEMQ 424

Query: 405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN 464
            L LA N I G IP+SL NL++L+Q+DLS N L G IP +F NFQ LLS+DLSNNR+N +
Sbjct: 425 ELYLASNNISGRIPSSLGNLRQLSQLDLSSNRLVGGIPTNFSNFQRLLSMDLSNNRLNES 484

Query: 465 IPKGIL-----------------RPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
           IPK IL                  PLP+E+  LE+VVTIDLS N LSG++P S+  CKSL
Sbjct: 485 IPKEILGLPGLSTLLNLSKNSLTGPLPQEVEALESVVTIDLSHNHLSGSIPESISKCKSL 544

Query: 508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG 567
           EEL MA N FSG IP+ + E++GLE+LDLS+N+L+GSIPS LQ L AL+ LNL+FNNLEG
Sbjct: 545 EELFMANNXFSGSIPDTLGEVRGLEILDLSTNQLTGSIPSSLQELXALQLLNLSFNNLEG 604

Query: 568 VVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIIL-----SIIVTIMAVIAGCF 622
           VVPSEG+F+N+S VH++GN KLCL L C   + HG R  +            + +  G F
Sbjct: 605 VVPSEGVFKNLSRVHIEGNSKLCLNLACT--KGHGRRFAVFXIILIIASAIAICLAXGSF 662

Query: 623 LIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNER 682
             V+   + +  A  +                                      VL  +R
Sbjct: 663 GSVYKGYLTEGTAVAI-------------------------------------KVLDIQR 685

Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
            GSWKSF AECE LR VRHRNLVKLITSCSSLD KN+EFLAL+Y+F+ NGSL DWI+G R
Sbjct: 686 NGSWKSFFAECEALRXVRHRNLVKLITSCSSLDFKNVEFLALIYDFMHNGSLEDWINGTR 745

Query: 743 KN--------------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           ++               +D+  A+DYLH+D E P+ H DLKP N+LLD++MTAKVGDFGL
Sbjct: 746 RHXSGCALNLVERLKIAIDVACAMDYLHHDSETPIAHCDLKPSNVLLDKDMTAKVGDFGL 805

Query: 789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE 848
           AR L++R  +Q SI+STH   GSIGY+PP           G  PT ESF G   + +WV+
Sbjct: 806 ARLLMDRAADQQSIASTHGLRGSIGYIPP-----------GKSPTHESFLGGLTLAQWVQ 854

Query: 849 SNLPENVLQVLDPEL------RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG 902
           S  P NV QV+DPEL       Q      S+ +Q H+CLI +IG V LSCT +S   RI 
Sbjct: 855 SAFPTNVRQVVDPELLLPTGXLQHEGHPISEEVQ-HECLIAVIG-VALSCTVDSSDRRIS 912

Query: 903 IREALRRLKSSQEILLK 919
            R+A  +LK++ + LLK
Sbjct: 913 SRDAXSQLKTAXKALLK 929

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	929
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.599	0.543	0.378	4.5e-124
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.600	0.552	0.373	2.4e-123
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.599	0.552	0.368	4.5e-122
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.602	0.543	0.369	8.4e-121
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.611	0.561	0.363	1.4e-120
UNIPROTKB|O24435	813	O24435 "Receptor kinase-like p	0.728	0.832	0.328	7.6e-118
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.639	0.606	0.341	5e-108
TAIR|locus:2169975	993	HSL2 "HAESA-like 2" [Arabidops	0.700	0.655	0.308	2.3e-98
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.640	0.507	0.334	4.3e-95
TAIR|locus:2160791	1102	AT5G63930 [Arabidopsis thalian	0.586	0.494	0.328	2.6e-94

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.5e-124, Sum P(2) = 4.5e-124
 Identities = 226/597 (37%), Positives = 323/597 (54%)

Query:    28 TDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
             TDK+AL+ FKSQ+S E               C+W GV C     RV G++L    L G +
Sbjct:    39 TDKQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVV 97

Query:    88 SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
             SP +GNLSFLRS+ L +N   G +P E+GNLFRL+ LN+S N   G +PV +S  + L  
Sbjct:    98 SPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLST 157

Query:   148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
             LDL +N +   V  +   +L  L +L+ G+N L G  P S+ NL                
Sbjct:   158 LDLSSNHLEQGVPLE-FGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216

Query:   192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
             IP D++RL+ +    + +N+  G  P  IYN++SL+ L +  N   G +  D    LPNL
Sbjct:   217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276

Query:   252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI-- 309
                    N FTG IP +L N+++++ + +  N L G +P   G L  L    +  N +  
Sbjct:   277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336

Query:   310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
              SSGD   L F+ +LTN + L YL +  N+  G++P  I N S +L++L LGGN I G I
Sbjct:   337 YSSGD---LDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSI 393

Query:   370 PASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQ 429
             P  IG L SL  LDL  N ++G++P  +             N + G IP+SL N+  L  
Sbjct:   394 PHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTY 453

Query:   430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR----------------PL 473
             + L  N   G IP S G+   LL ++L  N++NG+IP  ++                 PL
Sbjct:   454 LYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPL 513

Query:   474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
              ++I +L+ ++ +D+S N LSG +P +L NC SLE LL+  N F GPIP+I   L GL  
Sbjct:   514 RQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRF 572

Query:   534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
             LDLS N LSG+IP  + N   L++LNL+ NN +G VP+EG+FRN S + + GN  LC
Sbjct:   573 LDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLC 629

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 2.4e-123, Sum P(2) = 2.4e-123
 Identities = 222/595 (37%), Positives = 312/595 (52%)

Query:    28 TDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
             TD++AL+ FKSQ+S++               C W GV C     RV  L L    L G I
Sbjct:    24 TDRQALLQFKSQVSEDKRVVLSSWNHSFPL-CNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query:    88 SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
             SP IGNLSFL S+ L  N   G +P+E+G L RL  L++  N L+G +P+ +   + L  
Sbjct:    83 SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142

Query:   148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
             L L +N++ G V  + L +L +L  LN   N + G +P S+ NL                
Sbjct:   143 LRLDSNRLGGSVPSE-LGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGE 201

Query:   192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
             IPSD+++L  +  L L  N  +G  P  +YN++SL  L +  N   G +  D+   LPNL
Sbjct:   202 IPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNL 261

Query:   252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
             L F    N FTG IP +L N++ ++ + M  N L G++P   GN+P L+   +  N +  
Sbjct:   262 LSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSL-G 319

Query:   312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
             S     L F+TSLTN T L  L +  N+  G +P SI N S +L  L LGG  I G IP 
Sbjct:   320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379

Query:   372 SIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQID 431
              IG L +L  L L  N +SG +P  +             N + GGIP  + N+  L  +D
Sbjct:   380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLD 439

Query:   432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR----------------PLPE 475
             LS N   G +P S GN   LL + + +N++NG IP  I++                 LP+
Sbjct:   440 LSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQ 499

Query:   476 EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD 535
             +I  L+N+ T+ L DN LSG LP +L NC ++E L +  N F G IP++   L G++ +D
Sbjct:   500 DIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVD 558

Query:   536 LSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
             LS+N LSGSIP    +   L  LNL+FNNLEG VP +GIF N + V + GN  LC
Sbjct:   559 LSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLC 613

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
 Identities = 220/597 (36%), Positives = 317/597 (53%)

Query:    28 TDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
             +D++AL+  KSQ+S E               C+W  V C     RV  L+L    L G I
Sbjct:    24 SDRQALLEIKSQVS-ESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVI 82

Query:    88 SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
             SP IGNLSFL  + L NN   G +P+E+GNLFRL+ L + FN L+GE+P ++S  + L  
Sbjct:    83 SPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLY 142

Query:   148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
             LDL +N + G     +L +LR L  L  G N L G  P  I NL                
Sbjct:   143 LDLFSNNL-GDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGE 201

Query:   192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
             IP D++ L  +  L LT+N  +G  P   YN++SL +L L  N   G +  D  + LPN+
Sbjct:   202 IPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPNI 261

Query:   252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI-- 309
              +     N  TG IP +L N++ +++  +  N + G++ P  G L  L    +  N +  
Sbjct:   262 HELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLGS 321

Query:   310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
              S GD   L+F+ +LTN +HL+ L++  N+  G +P SI N S EL+ L L GN IYG I
Sbjct:   322 YSFGD---LAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSI 378

Query:   370 PASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQ 429
             P  IG L  L  L L+ N ++G +P  +             N   G IP+ + NL +L +
Sbjct:   379 PHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQLVK 438

Query:   430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR-P---------------L 473
             + LS N   G +P S G+   +L + +  N++NG IPK I++ P               L
Sbjct:   439 LYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSGSL 498

Query:   474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
             P +I RL+N+V + L +N+LSG+LP +L  C S+E + +  N F G IP+I   L G++ 
Sbjct:   499 PNDIGRLQNLVELLLGNNNLSGHLPQTLGKCLSMEVIYLQENHFDGTIPDIKG-LMGVKN 557

Query:   534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
             +DLS+N LSGSI    +N   L  LNL+ NN EG VP+EGIF+N + V + GN  LC
Sbjct:   558 VDLSNNNLSGSISEYFENFSKLEYLNLSDNNFEGRVPTEGIFQNATLVSVFGNKNLC 614

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 8.4e-121, Sum P(2) = 8.4e-121
 Identities = 220/595 (36%), Positives = 317/595 (53%)

Query:    28 TDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGNRVIGLNLSSFGLEGTI 87
             TD +AL+ FKSQ+S+                C W GV C     RVI LNL  F L G I
Sbjct:    30 TDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVI 89

Query:    88 SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
             SP IGNLSFLR + L +N     +P+++G LFRL+ LN+S+N L+G +P ++S  + L  
Sbjct:    90 SPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLST 149

Query:   148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL---------------- 191
             +DL +N + G     +L +L  L +L+  KN L G+ P S+ NL                
Sbjct:   150 VDLSSNHL-GHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208

Query:   192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
             IP +++RL  +    + +N  +G  P  +YN++SL  L LA N   G +  D    LPNL
Sbjct:   209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268

Query:   252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                +   N+FTG IP +L N+++++   ++ N L G++P   G L  L    I  N +  
Sbjct:   269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL-G 327

Query:   312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
             +    GL FI ++ N T L YL +  N+  G++P SI N S  L+ L+LG N I G IP 
Sbjct:   328 NNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPH 387

Query:   372 SIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQID 431
              IG L SL  L L  N +SGE+P+               N I G IP+   N+ +L ++ 
Sbjct:   388 DIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLH 447

Query:   432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR-P---------------LPE 475
             L+ N   G IP S G  + LL + +  NR+NG IP+ IL+ P                PE
Sbjct:   448 LNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPE 507

Query:   476 EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD 535
             E+ +LE +V +  S N LSG +P ++  C S+E L M  N F G IP+I + L  L+ +D
Sbjct:   508 EVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDI-SRLVSLKNVD 566

Query:   536 LSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
              S+N LSG IP  L +L +LR+LNL+ N  EG VP+ G+FRN + V + GN  +C
Sbjct:   567 FSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNIC 621

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 910 (325.4 bits), Expect = 1.4e-120, Sum P(2) = 1.4e-120
 Identities = 222/610 (36%), Positives = 318/610 (52%)

Query:    15 LPFGADSASVGINTDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGNRVI 74
             L  GAD  +    TD++AL+ FKSQ+S E               C W  V C     RV 
Sbjct:    13 LLLGADGFTD--ETDRQALLEFKSQVS-EGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVT 69

Query:    75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE 134
              LNL    L G +SP IGN+SFL S+ L +N   G +PRE+GNLFRL  L ++FN+L+G 
Sbjct:    70 HLNLGGLQLGGIVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGG 129

Query:   135 LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL--- 191
             +P  +S  + L  LDL +N +   V  + L +L  L +L+ G+N L G +P S+ NL   
Sbjct:   130 IPATLSNCSRLLNLDLYSNPLRQGVPSE-LGSLTKLVILDLGRNNLKGKLPRSLGNLTSL 188

Query:   192 -------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGG 238
                          +P +L+RL  +  L L++N+  G  P  IYN+++L  L L  +   G
Sbjct:   189 KSLGFTDNNIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSG 248

Query:   239 EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
              +  D  + LPN+ +     N   G IP +L N++ +Q   +  N++ G + P  G +P 
Sbjct:   249 SLKPDFGNLLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPS 308

Query:   299 LRTYNIGFNKIVSS--GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS 356
             L+  ++  N + S   GD   L FI SLTN THL  L++   +  G +P SI N S EL 
Sbjct:   309 LQYLDLSENPLGSYTFGD---LEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELI 365

Query:   357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGG 416
              L L GNH +G IP  IG L  L  L L  N ++G +P  +             N + G 
Sbjct:   366 SLNLIGNHFFGSIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGE 425

Query:   417 IPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR-P--- 472
             IP+ + NL +L  + LS N   G +P S G    +L + +  N++NG IPK I++ P   
Sbjct:   426 IPSFIGNLTQLEILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLV 485

Query:   473 ------------LPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
                         LP +I  L+N+V + L +N  SG+LP +L NC ++E+L +  N F G 
Sbjct:   486 NLSMEGNSLSGSLPNDIGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGA 545

Query:   521 IPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
             IPNI   L G+  +DLS+N LSGSIP    N   L  LNL+ NN  G VPS+G F+N + 
Sbjct:   546 IPNIRG-LMGVRRVDLSNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTI 604

Query:   581 VHLKGNPKLC 590
             V + GN  LC
Sbjct:   605 VFVFGNKNLC 614

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 966 (345.1 bits), Expect = 7.6e-118, Sum P(2) = 7.6e-118
 Identities = 242/736 (32%), Positives = 383/736 (52%)

Query:    29 DKEALMSFKSQIS-QEXXXXXXXXXXXXXXXCTWPGVICNN-FGNRVIGLNLSSFGLEGT 86
             D+ AL+SFKS +  Q                CTW GV+C     +RV+ L L S  L G 
Sbjct:    34 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRHPHRVVKLRLRSSNLAGI 93

Query:    87 ISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELK 146
             ISP +GNLSFLR++QL +N LSG +P+E+  L RL+ L ++FN+L GE+P  +  LT L 
Sbjct:    94 ISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEIPAALGNLTSLS 153

Query:   147 MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD 206
             +L+L  N ++G +    L  L  L  L   +N L GSIP        S   +L  L  L 
Sbjct:   154 VLELTNNTLSGAIPSS-LGKLTGLTDLALAENTLSGSIP--------SSFGQLRRLSFLS 204

Query:   207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
             L  N L+G +P  I+N++SL    + SN+L G +P +    LP+L +    +N+F G+IP
Sbjct:   205 LAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGRIP 264

Query:   267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG--FNKIVSSGDDEGLSFITSL 324
              S+ N +NI I  +  N   G +PP +G +  L+   +    ++   + D + ++ +T+ 
Sbjct:   265 ASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALTNC 324

Query:   325 TN----------------------STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGG 362
             +N                      S+ L  L++  N+  G +P  IGN  N L  L L  
Sbjct:   325 SNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVN-LQYLSLAN 383

Query:   363 NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLA 422
             N + G +P+S  +L++L  L +  N + G +P+ I             N   G IP++L 
Sbjct:   384 NSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAFGGTIPSTLG 443

Query:   423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSI-DLSNNRINGNIPKGILRPLPEEISRLE 481
             NL KL QI+L  N   G+IPI   +  +L  I D+S+N + G+IPK        EI +L+
Sbjct:   444 NLTKLFQINLGHNNFIGQIPIEIFSIPALSEILDVSHNNLEGSIPK--------EIGKLK 495

Query:   482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL 541
             N+V      N LSG  P+++  C+ L+ L +  N  +G IP  + +LKGL+ LDLS N L
Sbjct:   496 NIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGNNL 555

Query:   542 SGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC-----LQLG-C 595
             SG IP  L ++  L SLNL+FN+  G VP+ G+F N S ++++GN  +C     L L  C
Sbjct:   556 SGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLPTC 615

Query:   596 --ENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISY 653
               ++ +    ++++L +++ +++ +A   L+   +   KR+ K V  +   +  HP I+Y
Sbjct:   616 SLKSRKKKKHQILLLVVVICLVSTLAVFSLLYMLLTCHKRRKKEVPATTSMQG-HPMITY 674

Query:   654 DELRRATGNFSHENLIGSGSFGSVLHNE---RTGSWKSFIAECETLRNVRHRNLVKLITS 710
              +L +AT  FS  +L+GSGSFGSV   E   + G   S +A    L+    + L      
Sbjct:   675 KQLVKATDGFSSSHLLGSGSFGSVYKGEFDSQDGEITSLVA-VRVLKLETPKALKSFTAE 733

Query:   711 CSSL-DSKNMEFLALV 725
             C +L ++++   + +V
Sbjct:   734 CETLRNTRHRNLVKIV 749

GO:0004672 "protein kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 794 (284.6 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
 Identities = 221/647 (34%), Positives = 336/647 (51%)

Query:    59 CTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNL 118
             C W GV CN    +VI L++S   L G ISP I NL+ L  + L  N   G +P EIG+L
Sbjct:    54 CNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGSL 113

Query:   119 FR-LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRN--LRSLQVLNF 175
                L+ L++S N L G +P  +  L  L  LDL +N++ G +      N    SLQ ++ 
Sbjct:   114 HETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDL 173

Query:   176 GKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ 235
               N L G IP +           L+ L+ L L  N+L GTVPS++ N T+L  + L SN 
Sbjct:   174 SNNSLTGEIPLNYH-------CHLKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNM 226

Query:   236 LGGEIPYDVRDTLPNLLDFIYC-FNRF------TGKIP--GSLHNLTNIQIIRMTHNLLE 286
             L GE+P  V   +P L  F+Y  +N F      T   P   SL N +++Q + +  N L 
Sbjct:   227 LSGELPSQVISKMPQL-QFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLG 285

Query:   287 GTLPPGLGNLPF-LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP 345
             G +   + +L   L   ++  N+I  S   E    I++L N T LN   L  N   G IP
Sbjct:   286 GEITSSVRHLSVNLVQIHLDQNRIHGSIPPE----ISNLLNLTLLN---LSSNLLSGPIP 338

Query:   346 ESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXX 405
               +   S +L ++YL  NH+ G+IP  +G +  L LLD+S N++SG IP           
Sbjct:   339 RELCKLS-KLERVYLSNNHLTGEIPMELGDIPRLGLLDVSRNNLSGSIPDSFGNLSQLRR 397

Query:   406 XXXXXNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISF-GNFQSL-LSIDLSNNRING 463
                  N + G +P SL     L  +DLS N LTG IP+    N ++L L ++LS+N ++G
Sbjct:   398 LLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSG 457

Query:   464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPN 523
                     P+P E+S+++ V+++DLS N LSG +P  L +C +LE L ++ N FS  +P+
Sbjct:   458 --------PIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPS 509

Query:   524 IVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHL 583
              + +L  L+ LD+S N+L+G+IP   Q    L+ LN +FN L G V  +G F  ++    
Sbjct:   510 SLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDKGSFSKLTIESF 569

Query:   584 KGNPKLCLQL-GCEN-PRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVS 641
              G+  LC  + G +   + H    ++L ++++++A    C +  +P++ R R  K + V 
Sbjct:   570 LGDSLLCGSIKGMQACKKKHKYPSVLLPVLLSLIATPVLC-VFGYPLVQRSRFGKNLTVY 628

Query:   642 ALFKV-----------CHPKISYDELRRATGNFSHENLIGSGSFGSV 677
             A  +V            +P+ISY +L  ATG F+  +LIGSG FG V
Sbjct:   629 AKEEVEDEEKQNQNDPKYPRISYQQLIAATGGFNASSLIGSGRFGHV 675

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2169975 HSL2 "HAESA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 2.3e-98, Sum P(3) = 2.3e-98
 Identities = 222/720 (30%), Positives = 352/720 (48%)

Query:    73 VIGLNLSSFGLEGTI-SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR-LRVLNISFNN 130
             +I + LS   L GTI S  +   S L+++ L  N  SG LP E    FR LRVL +  N 
Sbjct:   100 LINITLSQNNLNGTIDSAPLSLCSKLQNLILNQNNFSGKLP-EFSPEFRKLRVLELESNL 158

Query:   131 LQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIAN 190
               GE+P +  +LT L++L+L  N ++G +    L  L  L  L+    L + S  PS   
Sbjct:   159 FTGEIPQSYGRLTALQVLNLNGNPLSG-IVPAFLGYLTELTRLD----LAYISFDPSP-- 211

Query:   191 LIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPN 250
              IPS L  L NL  L LT + L G +P +I N+  L +L LA N L GEIP  +   L +
Sbjct:   212 -IPSTLGNLSNLTDLRLTHSNLVGEIPDSIMNLVLLENLDLAMNSLTGEIPESI-GRLES 269

Query:   251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI------ 304
             +       NR +GK+P S+ NLT ++   ++ N L G LP  +  L  + ++N+      
Sbjct:   270 VYQIELYDNRLSGKLPESIGNLTELRNFDVSQNNLTGELPEKIAALQLI-SFNLNDNFFT 328

Query:   305 -GFNKIVSSGDD--EGLSFITSLTNS--------THLNYLALDGNQFEGKIPESIGNFSN 353
              G   +V+   +  E   F  S T +        + ++   +  N+F G++P  +  +  
Sbjct:   329 GGLPDVVALNPNLVEFKIFNNSFTGTLPRNLGKFSEISEFDVSTNRFSGELPPYLC-YRR 387

Query:   354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEI 413
             +L K+    N + G+IP S G   SL  + ++ N +SGE+P                N++
Sbjct:   388 KLQKIITFSNQLSGEIPESYGDCHSLNYIRMADNKLSGEVPARFWELPLTRLELANNNQL 447

Query:   414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL 473
              G IP S++  + L+Q+++S N  +G IP+   + + L  IDLS N   G+IP  I    
Sbjct:   448 QGSIPPSISKARHLSQLEISANNFSGVIPVKLCDLRDLRVIDLSRNSFLGSIPSCI---- 503

Query:   474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
                 ++L+N+  +++ +N L G +P+S+ +C  L EL ++ N+  G IP  + +L  L  
Sbjct:   504 ----NKLKNLERVEMQENMLDGEIPSSVSSCTELTELNLSNNRLRGGIPPELGDLPVLNY 559

Query:   534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL-Q 592
             LDLS+N+L+G IP++L  L+ L   N++ N L G +PS G  +++      GNP LC   
Sbjct:   560 LDLSNNQLTGEIPAELLRLK-LNQFNVSDNKLYGKIPS-GFQQDIFRPSFLGNPNLCAPN 617

Query:   593 LGCENP-RSHGSRLIILSIIVTIMAVIAGCFLIVWPII----VRKRKAKRVGVSALFKVC 647
             L    P RS      IL I +  +  + G   +VW  I    + KRK KR     +F+  
Sbjct:   618 LDPIRPCRSKRETRYILPISILCIVALTGA--LVWLFIKTKPLFKRKPKRTNKITIFQ-- 673

Query:   648 HPKISYDELRRATGNFSHENLIGSGSFGSV----LHNERTGSWKSFIAEC--ETLRNVRH 701
               ++ + E        + +N+IGSG  G V    L + +T + K    E   +T      
Sbjct:   674 --RVGFTE-EDIYPQLTEDNIIGSGGSGLVYRVKLKSGQTLAVKKLWGETGQKTESESVF 730

Query:   702 RNLVKLITSCSS-------LDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY 754
             R+ V+ +            +     EF  LVYEF+ NGSLGD +H E+++     S LD+
Sbjct:   731 RSEVETLGRVRHGNIVKLLMCCNGEEFRFLVYEFMENGSLGDVLHSEKEHRA--VSPLDW 788

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 4.3e-95, Sum P(2) = 4.3e-95
 Identities = 218/651 (33%), Positives = 318/651 (48%)

Query:    63 GVICNNFGN--RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR 120
             G I    GN   ++ L L    L G I   +GNL  L+++++  NKL+ ++P  +  L +
Sbjct:   254 GDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQ 313

Query:   121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
             L  L +S N+L G +   I  L  L++L L +N  TG      + NLR+L VL  G N  
Sbjct:   314 LTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQS-ITNLRNLTVLTVGFN-- 370

Query:   181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
                   +I+  +P+DL  L NL+ L    N L G +PS+I N T L  L L+ NQ+ GEI
Sbjct:   371 ------NISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEI 424

Query:   241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLR 300
             P        NL       N FTG+IP  + N +N++ + +  N L GTL P +G L  LR
Sbjct:   425 PRGFGRM--NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLR 482

Query:   301 TYNIGFNKIVSS-----GD--DEGLSFITS----------LTNSTHLNYLALDGNQFEGK 343
                + +N +        G+  D  + ++ S          ++N T L  L +  N  EG 
Sbjct:   483 ILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGP 542

Query:   344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXX 403
             IPE + +    LS L L  N   G+IPA   +L SLT L L  N  +G IP  +      
Sbjct:   543 IPEEMFDMKL-LSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLL 601

Query:   404 XXXXXXXNEIPGGIPNSL-ANLKKLN-QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI 461
                    N + G IP  L A+LK +   ++ S N LTG IP   G  + +  IDLSNN  
Sbjct:   602 NTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLF 661

Query:   462 NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSL-KNCKSLEELLMAYNQFSGP 520
             +G+IP+ +           +NV T+D S N+LSG++P+ + +    +  L ++ N FSG 
Sbjct:   662 SGSIPRSL--------QACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGE 713

Query:   521 IPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
             IP     +  L  LDLSSN L+G IP  L NL  L+ L L  NNL+G VP  G+F+N++ 
Sbjct:   714 IPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINA 773

Query:   581 VHLKGNPKLCLQLG----C--ENPRSHGS-RLIILSIIVTIMAVIAGCFLIVWPIIVRKR 633
               L GN  LC        C  +   SH S R  ++ II+   A +    L+V  +   K+
Sbjct:   774 SDLMGNTDLCGSKKPLKPCTIKQKSSHFSKRTRVILIILGSAAALLLVLLLVLILTCCKK 833

Query:   634 KAKRVGVSA------LFKVCHPK-ISYDELRRATGNFSHENLIGSGSFGSV 677
             K K++  S+      L      K     EL +AT +F+  N+IGS S  +V
Sbjct:   834 KEKKIENSSESSLPDLDSALKLKRFEPKELEQATDSFNSANIIGSSSLSTV 884

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2160791 AT5G63930 [Arabidopsis thaliana (taxid:3702)]

 Score = 708 (254.3 bits), Expect = 2.6e-94, Sum P(2) = 2.6e-94
 Identities = 193/587 (32%), Positives = 292/587 (49%)

Query:    21 SASVGINTDKEALMSFKSQISQEXXXXXXXXXXXXXXXCTWPGVICNNFGN--RVIGLNL 78
             S + G+N + + L+  KS+   +               C W GV+C+N+ +   V+ LNL
Sbjct:    22 SETTGLNLEGQYLLEIKSKFV-DAKQNLRNWNSNDSVPCGWTGVMCSNYSSDPEVLSLNL 80

Query:    79 SSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVN 138
             SS  L G +SP IG L  L+ + L  N LSG +P+EIGN   L +L ++ N   GE+PV 
Sbjct:    81 SSMVLSGKLSPSIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVE 140

Query:   139 ISKLTELKMLDLMANKITGRVTDDQLRNLRSL-QVLNFGKNLLWGSIPPSIANLIPSDLS 197
             I KL  L+ L +  N+I+G +  + + NL SL Q++ +  N+  G +P SI NL      
Sbjct:   141 IGKLVSLENLIIYNNRISGSLPVE-IGNLLSLSQLVTYSNNIS-GQLPRSIGNL-----K 193

Query:   198 RLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC 257
             RL + +      N ++G++PS I    SLV L LA NQL GE+P ++   L  L   I  
Sbjct:   194 RLTSFRAGQ---NMISGSLPSEIGGCESLVMLGLAQNQLSGELPKEI-GMLKKLSQVILW 249

Query:   258 FNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP---FLRTYNIGFNKIVSS-- 312
              N F+G IP  + N T+++ + +  N L G +P  LG+L    FL  Y  G N  +    
Sbjct:   250 ENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREI 309

Query:   313 GD-------DEGLSFITS-----LTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL 360
             G+       D   + +T      L N   L  L L  NQ  G IP  +    N LSKL L
Sbjct:   310 GNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKN-LSKLDL 368

Query:   361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNS 420
               N + G IP     LR L +L L  NS+SG IP ++             N + G IP+ 
Sbjct:   369 SINALTGPIPLGFQYLRGLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSY 428

Query:   421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
             L     +  ++L  N L+G IP      ++L+ + L+ N + G  P  + + +       
Sbjct:   429 LCLHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQV------- 481

Query:   481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
              NV  I+L  N   G++P  + NC +L+ L +A N F+G +P  +  L  L  L++SSNK
Sbjct:   482 -NVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIGMLSQLGTLNISSNK 540

Query:   541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGN 586
             L+G +PS++ N + L+ L++  NN  G +PSE G    +  + L  N
Sbjct:   541 LTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNN 587

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
C0LGP4	Y3475_ARATH	2, ., 7, ., 1, 1, ., 1	0.3854	0.9483	0.8722	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014914001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (1026 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	929
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-91
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-28
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-25
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	7e-25
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	5e-20
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	7e-20
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	9e-20
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-18
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-18
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	6e-18
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	7e-18
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-17
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-16
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	7e-16
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-15
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	3e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	7e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-14
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	6e-14
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	2e-13
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-13
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	4e-13
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	5e-13
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	6e-13
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	7e-13
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	9e-13
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	1e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-12
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	2e-12
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-12
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-12
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-12
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-12
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	6e-12
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-12
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	8e-12
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	2e-11
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	2e-11
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-11
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-11
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-11
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	6e-11
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	6e-11
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	7e-11
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	8e-11
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	1e-10
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	1e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	3e-10
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	3e-10
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-10
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-10
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-10
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-10
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	6e-10
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	8e-10
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	9e-10
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	1e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-09
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	2e-09
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	3e-09
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	3e-09
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-09
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	5e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	6e-09
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	6e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	6e-09
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-09
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	6e-09
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	8e-09
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	8e-09
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	8e-09
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	9e-09
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	1e-08
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-08
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-08
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	2e-08
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	3e-08
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	3e-08
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-08
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-08
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	3e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-08
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-08
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	5e-08
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	5e-08
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	6e-08
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	6e-08
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	6e-08
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	8e-08
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	1e-07
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	1e-07
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	2e-07
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-07
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	2e-07
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	2e-07
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-07
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	2e-07
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-07
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-07
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	3e-07
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	3e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	3e-07
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-07
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	3e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	3e-07
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	3e-07
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	4e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	4e-07
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	4e-07
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-07
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	5e-07
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	6e-07
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	6e-07
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	6e-07
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	7e-07
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	7e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	8e-07
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	1e-06
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-06
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-06
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	2e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-06
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	2e-06
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	2e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	3e-06
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	3e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-06
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	3e-06
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	3e-06
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	3e-06
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	4e-06
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	4e-06
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	4e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	4e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	5e-06
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	5e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	6e-06
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	6e-06
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	7e-06
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	7e-06
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	7e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	7e-06
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	8e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	8e-06
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	8e-06
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	9e-06
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	9e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	1e-05
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	1e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-05
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	1e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	1e-05
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	1e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-05
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-05
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	1e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	1e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	2e-05
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	2e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-05
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-05
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-05
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-05
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	3e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-05
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	3e-05
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	3e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	3e-05
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	3e-05
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-05
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	4e-05
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	4e-05
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	4e-05
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	4e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	5e-05
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	5e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	5e-05
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	5e-05
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	6e-05
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	6e-05
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	6e-05
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	6e-05
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	6e-05
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	7e-05
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	7e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	8e-05
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	8e-05
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	8e-05
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	8e-05
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	8e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-04
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	1e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	1e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	1e-04
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	1e-04
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-04
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	2e-04
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	2e-04
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-04
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-04
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	2e-04
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	2e-04
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	2e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	2e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	3e-04
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	3e-04
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	3e-04
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	3e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	3e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	3e-04
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	3e-04
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	3e-04
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	4e-04
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	4e-04
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	5e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	5e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	5e-04
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	6e-04
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	6e-04
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	6e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	6e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	6e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	7e-04
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	7e-04
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	9e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.001
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.001
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	0.001
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	0.001
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.002
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	0.002
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	0.002
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	0.002
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	0.002
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.002
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.002
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	0.002
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	0.003
cd05120	155	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphot	0.003
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	0.003
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	0.004
cd05086	268	cd05086, PTKc_Aatyk2, Catalytic domain of the Prot	0.004
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	0.004
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  311 bits (798), Expect = 2e-91
 Identities = 279/1002 (27%), Positives = 453/1002 (45%), Gaps = 201/1002 (20%)

Query: 31  EALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGL-------------- 76
           E L+SFKS I    P   LS WN S+  C W G+ CNN  +RV+ +              
Sbjct: 32  ELLLSFKSSI--NDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSA 88

Query: 77  ----------NLSSFGLEGTISPHI-----------------------GNLSFLRSIQLQ 103
                     NLS+  L G I   I                       G++  L ++ L 
Sbjct: 89  IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148

Query: 104 NNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQ 163
           NN LSG +P +IG+   L+VL++  N L G++P +++ LT L+ L L +N++ G++   +
Sbjct: 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR-E 207

Query: 164 LRNLRSLQVLNFGKNLLWGSIPPSIANL----------------IPSDLSRLENLKVLDL 207
           L  ++SL+ +  G N L G IP  I  L                IPS L  L+NL+ L L
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFL 267

Query: 208 TINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCF-NRFTGKIP 266
             N+L+G +P +I+++  L+ L L+ N L GEIP ++   L NL + ++ F N FTGKIP
Sbjct: 268 YQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVIQLQNL-EILHLFSNNFTGKIP 325

Query: 267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTN 326
            +L +L  +Q++++  N   G +P  LG                                
Sbjct: 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGK------------------------------- 354

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
             +L  L L  N   G+IPE + + S  L KL L  N + G+IP S+G  RSL  + L  
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCS-SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           NS SGE+P E  +L  +  L ++ N + G I +   ++  L  + L+ N+  G +P SFG
Sbjct: 414 NSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG 473

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
           + + L ++DLS N+ +G +P+  L  L E       ++ + LS+N LSG +P+ L +CK 
Sbjct: 474 S-KRLENLDLSRNQFSGAVPRK-LGSLSE-------LMQLKLSENKLSGEIPDELSSCKK 524

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
           L  L +++NQ SG IP   +E+  L  LDLS N+LSG IP +L N+++L  +N++ N+L 
Sbjct: 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584

Query: 567 GVVPSEGIFRNMSNVHLKGNPKLCLQLG------CENPRSHGSR-LIILSIIVTIMAVIA 619
           G +PS G F  ++   + GN  LC          C+  R   S    I   +   + +  
Sbjct: 585 GSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTLGAFLVLAL 644

Query: 620 GCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDEL---RRATGNFSHENLIGSGSFGS 676
             F  V+   +R R         L +V +   +++      + + + +  +++ S    +
Sbjct: 645 VAFGFVF---IRGRN-----NLELKRVENEDGTWELQFFDSKVSKSITINDILSSLKEEN 696

Query: 677 VLHNERTG-SWK-----------------------SFIAECETLRNVRHRNLVKLITSCS 712
           V+   + G S+K                       S IA+   +  ++H N+VKLI  C 
Sbjct: 697 VISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIAD---MGKLQHPNIVKLIGLCR 753

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCEVPVVHSD 767
           S      +   L++E++   +L + +        RK  + I  AL +LH  C   VV  +
Sbjct: 754 S-----EKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCSPAVVVGN 808

Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE--------- 818
           L P  I++D +    +    L   L    D +  ISS         YV PE         
Sbjct: 809 LSPEKIIIDGKDEPHL-RLSLPGLLC--TDTKCFISS--------AYVAPETRETKDITE 857

Query: 819 ----YGLG--ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV-LDPELRQLMTSNE 871
               YG G        G  P    F    +IV+W      +  L + +DP +R  ++ N+
Sbjct: 858 KSDIYGFGLILIELLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGDVSVNQ 917

Query: 872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS 913
           ++ ++        + ++ L CT   P  R    + L+ L+S+
Sbjct: 918 NEIVE--------VMNLALHCTATDPTARPCANDVLKTLESA 951

Length = 968

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  114 bits (289), Expect = 1e-28
 Identities = 58/194 (29%), Positives = 88/194 (45%), Gaps = 40/194 (20%)

Query: 663 FSHENLIGSGSFGSVL--HNERTG---------------SWKSFIAECETLRNVRHRNLV 705
           +     +G GSFG V    +++TG                 +  + E + L+ ++H N+V
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NE-------LDITSALDYLHN 757
           +L         ++ + L LV E+   G L D +    + +E         I SAL+YLH+
Sbjct: 61  RLYDVF-----EDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEARFYLRQILSALEYLHS 115

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +VH DLKP NILLDE+   K+ DFGLAR L               F+G+  Y+ P
Sbjct: 116 KG---IVHRDLKPENILLDEDGHVKLADFGLARQL-------DPGEKLTTFVGTPEYMAP 165

Query: 818 EYGLGERPSTAGDV 831
           E  LG+    A D+
Sbjct: 166 EVLLGKGYGKAVDI 179

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score =  105 bits (265), Expect = 1e-25
 Identities = 53/191 (27%), Positives = 77/191 (40%), Gaps = 42/191 (21%)

Query: 669 IGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
           +G G FG+V                    + +   +  + E E L+ + H N+VKL    
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHNDCEVP 762
                ++   L LV E+   GSL D +                L I   L+YLH      
Sbjct: 61  -----EDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRILLQILEGLEYLH---SNG 112

Query: 763 VVHSDLKPGNILLDE-EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
           ++H DLKP NILLD      K+ DFGL++ L       S  S     +G+  Y+ PE  L
Sbjct: 113 IIHRDLKPENILLDSDNGKVKLADFGLSKLL------TSDKSLLKTIVGTPAYMAPEVLL 166

Query: 822 GERP-STAGDV 831
           G+   S   D+
Sbjct: 167 GKGYYSEKSDI 177

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  104 bits (262), Expect = 7e-25
 Identities = 63/190 (33%), Positives = 85/190 (44%), Gaps = 41/190 (21%)

Query: 669 IGSGSFGSV----------------LHNERTGSWK--SFIAECETLRNVRHRNLVKLITS 710
           +GSGSFG+V                L      S K  +   E   LR + H N+V+LI  
Sbjct: 7   LGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLI-- 64

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCEVP 762
            +  D  +   L LV E+   G L D++        D        I   L+YLH++    
Sbjct: 65  DAFEDKDH---LYLVMEYCEGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSN---G 118

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           ++H DLKP NILLDE    K+ DFGLA+ LL+      S SS   F+G+  Y+ PE  LG
Sbjct: 119 IIHRDLKPENILLDENGVVKIADFGLAKKLLK------SSSSLTTFVGTPWYMAPEVLLG 172

Query: 823 ERP-STAGDV 831
                   DV
Sbjct: 173 GNGYGPKVDV 182

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 90.3 bits (225), Expect = 5e-20
 Identities = 50/196 (25%), Positives = 81/196 (41%), Gaps = 36/196 (18%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
            ++   L+G GSFGSV                  L  +     ++   E   L +++H N
Sbjct: 1   EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN 60

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NE-------LDITSALDYL 755
           +V+   S      +    L +  E++S GSL   +    K  E         I   L YL
Sbjct: 61  IVRYYGSERD---EEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYL 117

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H++    +VH D+K  NIL+D +   K+ DFG A+    R+ +  +   T    G+  ++
Sbjct: 118 HSNG---IVHRDIKGANILVDSDGVVKLADFGCAK----RLGDIETGEGTGSVRGTPYWM 170

Query: 816 PPEYGLGERPSTAGDV 831
            PE   GE    A D+
Sbjct: 171 APEVIRGEEYGRAADI 186

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 89.9 bits (224), Expect = 7e-20
 Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 39/157 (24%)

Query: 669 IGSGSFGSV--------------------LHNERTGS-WKSFIAECETLRNVRHRNLVKL 707
           +G G+FG V                    L  + +    + F+ E   +R + H N+VKL
Sbjct: 7   LGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKL 66

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           +  C+       E L +V E++  G L D++   R  EL           I   ++YL  
Sbjct: 67  LGVCTE-----EEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE- 120

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                 +H DL   N L+ E +  K+ DFGL+R L +
Sbjct: 121 --SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYD 155

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 89.5 bits (223), Expect = 9e-20
 Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 38/157 (24%)

Query: 669 IGSGSFGSV--------------------LHNERTGS-WKSFIAECETLRNVRHRNLVKL 707
           +G G+FG V                    L  + +    + F+ E   +R + H N+VKL
Sbjct: 7   LGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKL 66

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYLHND 758
           +  C+       E L +V E++  G L  ++   R            L I   ++YL   
Sbjct: 67  LGVCTE-----EEPLYIVMEYMEGGDLLSYLRKNRPKLSLSDLLSFALQIARGMEYLE-- 119

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                +H DL   N L+ E +  K+ DFGL+R L + 
Sbjct: 120 -SKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDD 155

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 86.5 bits (215), Expect = 1e-18
 Identities = 58/195 (29%), Positives = 80/195 (41%), Gaps = 41/195 (21%)

Query: 669 IGSGSFGSVLHNER--TG---SWKS-------------FIAECETLRNVRHRNLVKLITS 710
           IG GSFG+V    R   G    WK               ++E   LR ++H N+V+    
Sbjct: 8   IGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDR 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALDYLHN- 757
              +D  N + L +V E+   G L   I   +K                +  AL   HN 
Sbjct: 68  --IIDRSN-QTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNR 124

Query: 758 -DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
            D    V+H DLKP NI LD     K+GDFGLA+ L     + SS + T+V  G+  Y+ 
Sbjct: 125 SDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKIL----GHDSSFAKTYV--GTPYYMS 178

Query: 817 PEYGLGERPSTAGDV 831
           PE           D+
Sbjct: 179 PEQLNHMSYDEKSDI 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 85.3 bits (212), Expect = 2e-18
 Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 40/188 (21%)

Query: 669 IGSGSFGSV--LHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
           IG G FG V    ++RTG                +  I E + L+  +H N+VK     S
Sbjct: 8   IGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYY--GS 65

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDIT-------SALDYLHNDCEVPV 763
            L     + L +V EF S GSL D +    +   E  I          L+YLH++    +
Sbjct: 66  YLKK---DELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN---GI 119

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
           +H D+K  NILL  +   K+ DFGL+  L       S   + +  +G+  ++ PE   G+
Sbjct: 120 IHRDIKAANILLTSDGEVKLIDFGLSAQL-------SDTKARNTMVGTPYWMAPEVINGK 172

Query: 824 RPSTAGDV 831
                 D+
Sbjct: 173 PYDYKADI 180

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 84.1 bits (209), Expect = 6e-18
 Identities = 37/157 (23%), Positives = 63/157 (40%), Gaps = 40/157 (25%)

Query: 669 IGSGSFGSVLH-------------------NERTGS--WKSFIAECETLRNVRHRNLVKL 707
           +G G+FG V                      E       + F+ E   ++ + H N+V+L
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           +  C+  +      L +V E++  G L D++  +   +L           I   ++YL  
Sbjct: 67  LGVCTQGEP-----LYIVTEYMPGGDLLDFLR-KHGEKLTLKDLLQMALQIAKGMEYLE- 119

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                 VH DL   N L+ E +  K+ DFGL+R + E
Sbjct: 120 --SKNFVHRDLAARNCLVTENLVVKISDFGLSRDIYE 154

Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 84.1 bits (209), Expect = 7e-18
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 45/163 (27%)

Query: 667 NLIGSGSFGSVL--------------------HNERTGSWKSFIAECETLRNVRHRNLVK 706
             +G G+FG V                      +      K F+ E   ++ + H N+V+
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------------LDIT 749
           L+    + +        LV E++  G L D++   R                    + I 
Sbjct: 61  LL-GVCTEEEPLY----LVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIA 115

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             ++YL        VH DL   N L+ E++  K+ DFGL+R +
Sbjct: 116 KGMEYLA---SKKFVHRDLAARNCLVGEDLVVKISDFGLSRDV 155

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 58/191 (30%), Positives = 82/191 (42%), Gaps = 45/191 (23%)

Query: 669 IGSGSFGSVL--HNERTGSW-------KSFI----------AECETLRNVRHRNLVKLIT 709
           +G GSFG VL    + TG         K  I           E   L  + H  +VKL  
Sbjct: 1   LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDC 759
           +      +  E L LV E+   G L  + H  ++              I  AL+YLH+  
Sbjct: 61  AF-----QTEEKLYLVLEYAPGGEL--FSHLSKEGRFSEERARFYAAEIVLALEYLHS-- 111

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
            + +++ DLKP NILLD +   K+ DFGLA+      +  S  S T+ F G+  Y+ PE 
Sbjct: 112 -LGIIYRDLKPENILLDADGHIKLTDFGLAK------ELSSEGSRTNTFCGTPEYLAPEV 164

Query: 820 GLGERPSTAGD 830
            LG+    A D
Sbjct: 165 LLGKGYGKAVD 175

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 80.5 bits (199), Expect = 1e-16
 Identities = 44/146 (30%), Positives = 69/146 (47%), Gaps = 31/146 (21%)

Query: 668 LIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
            IG G FG V+  +  G             + ++F+AE   +  +RH NLV+L+     L
Sbjct: 13  TIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVV--L 70

Query: 715 DSKNMEFLALVYEFLSNGSLGDWI------HGERKNEL----DITSALDYLHNDCEVPVV 764
                  L +V E+++ GSL D++            +L    D+   ++YL    E   V
Sbjct: 71  QGNP---LYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLE---EKNFV 124

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLAR 790
           H DL   N+L+ E++ AKV DFGLA+
Sbjct: 125 HRDLAARNVLVSEDLVAKVSDFGLAK 150

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 78.3 bits (193), Expect = 7e-16
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 44/190 (23%)

Query: 669 IGSGSFGSVLHNERTGSWKS------------------FIAECETLRNVRHRNLVKLITS 710
           +GSG FG V      G W+                   FI E + +  + H NLV+L   
Sbjct: 12  LGSGQFGVV----HLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHNDCEV 761
           C+    K    + +V E+++NG L +++   +             D+  A++YL ++   
Sbjct: 68  CT----KQRP-IFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNG-- 120

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
             +H DL   N L+ E+   KV DFGLAR++L   D+Q + S    F   + + PPE   
Sbjct: 121 -FIHRDLAARNCLVGEDNVVKVSDFGLARYVL---DDQYTSSQGTKF--PVKWAPPEVFD 174

Query: 822 GERPSTAGDV 831
             R S+  DV
Sbjct: 175 YSRFSSKSDV 184

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 51/196 (26%), Positives = 79/196 (40%), Gaps = 40/196 (20%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           N+   +LIG G+FG V                  L   +  + KS + E + L+N++H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL-------DITSALDYL 755
           +VK I S      +  + L ++ E+  NGSL   I       E         +   L YL
Sbjct: 61  IVKYIGS-----IETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYL 115

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H      V+H D+K  NIL  ++   K+ DFG+A                   +G+  ++
Sbjct: 116 HEQ---GVIHRDIKAANILTTKDGVVKLADFGVA------TKLNDVSKDDASVVGTPYWM 166

Query: 816 PPEYGLGERPSTAGDV 831
            PE       STA D+
Sbjct: 167 APEVIEMSGASTASDI 182

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 76.8 bits (190), Expect = 3e-15
 Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 52/212 (24%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETL-RNVRH 701
           +F    +IG GSF +V+  +   + K +                     E E L R   H
Sbjct: 2   DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGH 61

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKNELD-------ITSAL 752
             ++KL    +  D +N   L  V E+  NG L  +I   G   +E         I  AL
Sbjct: 62  PGIIKLY--YTFQDEEN---LYFVLEYAPNGELLQYIRKYG-SLDEKCTRFYAAEILLAL 115

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV----- 807
           +YLH+     ++H DLKP NILLD++M  K+ DFG A+ L      +S+           
Sbjct: 116 EYLHS---KGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQI 172

Query: 808 ---------FMGSIGYVPPEYGLGERPSTAGD 830
                    F+G+  YV PE    +    + D
Sbjct: 173 EKNRRRFASFVGTAEYVSPELLNEKPAGKSSD 204

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 6e-15
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 11/117 (9%)

Query: 52  WNPSSSPCT-----WPGVIC---NNFGNRVI-GLNLSSFGLEGTISPHIGNLSFLRSIQL 102
           WN    PC      W G  C   +  G   I GL L + GL G I   I  L  L+SI L
Sbjct: 392 WN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINL 449

Query: 103 QNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRV 159
             N + GN+P  +G++  L VL++S+N+  G +P ++ +LT L++L+L  N ++GRV
Sbjct: 450 SGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 78.7 bits (194), Expect = 7e-15
 Identities = 40/89 (44%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE 392
           L LD     G IP  I      L  + L GN I G IP S+G + SL +LDLSYNS +G 
Sbjct: 423 LGLDNQGLRGFIPNDISKL-RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 393 IPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
           IP  +GQL  L++L L GN + G +P +L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 75.2 bits (186), Expect = 7e-15
 Identities = 49/183 (26%), Positives = 75/183 (40%), Gaps = 46/183 (25%)

Query: 667 NLIGSGSFGSVLHNERTGSWKSFIA------------------ECETLRNVRHRNLVKLI 708
             IG GSFG V    R    K ++                   E + L+ + H N++K  
Sbjct: 6   KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYY 65

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LD----ITSALDYL 755
               S + K    L +V E+   G L   I  ++K E         LD    +  AL YL
Sbjct: 66  ---ESFEEKGK--LCIVMEYADGGDLSQKIK-KQKKEGKPFPEEQILDWFVQLCLALKYL 119

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H+     ++H D+KP NI L      K+GDFG+++ L       S++      +G+  Y+
Sbjct: 120 HSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKVL------SSTVDLAKTVVGTPYYL 170

Query: 816 PPE 818
            PE
Sbjct: 171 SPE 173

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 77.2 bits (190), Expect = 2e-14
 Identities = 35/80 (43%), Positives = 48/80 (60%)

Query: 367 GKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKK 426
           G IP  I +LR L  ++LS NSI G IP  +G +  L+VL L+ N   G IP SL  L  
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 427 LNQIDLSGNELTGEIPISFG 446
           L  ++L+GN L+G +P + G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 50/185 (27%), Positives = 75/185 (40%), Gaps = 46/185 (24%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIA--------------------ECETLRNVRH 701
           +F     +G+GSFG V    R      + A                    E   L+++RH
Sbjct: 2   DFEFIKTLGTGSFGRV-MLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRH 60

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALD 753
             LV L  S    D  N   L LV E++  G L   +    +            +  AL+
Sbjct: 61  PFLVNLYGSFQ--DDSN---LYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALE 115

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YLH+  ++  V+ DLKP N+LLD +   K+ DFG A+ +  R         T+   G+  
Sbjct: 116 YLHS-LDI--VYRDLKPENLLLDSDGYIKITDFGFAKRVKGR---------TYTLCGTPE 163

Query: 814 YVPPE 818
           Y+ PE
Sbjct: 164 YLAPE 168

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 72.8 bits (179), Expect = 6e-14
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 15/110 (13%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN------- 744
           E E LR + H N+VK    C     ++   L L+ E+L +GSL D++   R         
Sbjct: 56  EIEILRTLDHENIVKYKGVCEKPGGRS---LRLIMEYLPSGSLRDYLQRHRDQINLKRLL 112

Query: 745 --ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                I   +DYL +      +H DL   NIL++ E   K+ DFGLA+ L
Sbjct: 113 LFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAKVL 159

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 72.6 bits (179), Expect = 1e-13
 Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 30/152 (19%)

Query: 667 NLIGSGSFGSVL--HNERTG----------------SWKSFIAECETLRNVRHRNLVKLI 708
             IGSG++G V    ++RTG                  K  + E + LR++RH N++ L+
Sbjct: 6   KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLL 65

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
                   ++   + +V E +    L   I   +    D        I   L YLH    
Sbjct: 66  DILRPPSPEDFNDVYIVTELMET-DLHKVIKSPQPLTDDHIQYFLYQILRGLKYLH---S 121

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             V+H DLKP NIL++     K+ DFGLAR +
Sbjct: 122 ANVIHRDLKPSNILVNSNCDLKICDFGLARGV 153

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLE 532
           +P +IS+L ++ +I+LS NS+ GN+P SL +  SLE L ++YN F+G IP  + +L  L 
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 533 VLDLSSNKLSGSIPSDLQNLQALR-SLNLTFN 563
           +L+L+ N LSG +P+ L      R S N T N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 37/190 (19%)

Query: 662 NFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRH-RNL 704
           ++     +G GSFG V                         + F+ E + L ++ H  N+
Sbjct: 1   SYRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNI 60

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH-----------GERKNELDITSALD 753
           VKL        S     L LV E++  GSL D +                    I SAL+
Sbjct: 61  VKLYDFFQDEGS-----LYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALE 115

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           YLH      ++H D+KP NILLD +    K+ DFGLA+ L +     S  +     +G+ 
Sbjct: 116 YLH---SKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTP 172

Query: 813 GYVPPEYGLG 822
           GY+ PE  LG
Sbjct: 173 GYMAPEVLLG 182

Length = 384

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 48/193 (24%), Positives = 80/193 (41%), Gaps = 48/193 (24%)

Query: 669 IGSGSFGSV---LH--------------NERTGSWKSFIAECETLRNVRHRNLVKL---- 707
           +G GS G V    H              +      K  + E +TLR+     +VK     
Sbjct: 9   LGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAF 68

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELD-------ITSALDYLHND 758
                         +++V E++  GSL D +  +     E         I   LDYLH  
Sbjct: 69  YKEGE---------ISIVLEYMDGGSLAD-LLKKVGKIPEPVLAYIARQILKGLDYLHTK 118

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             +  +H D+KP N+L++ +   K+ DFG+++ L   +D  ++      F+G++ Y+ PE
Sbjct: 119 RHI--IHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNT------FVGTVTYMSPE 170

Query: 819 YGLGERPSTAGDV 831
              GE  S A D+
Sbjct: 171 RIQGESYSYAADI 183

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 50/185 (27%), Positives = 77/185 (41%), Gaps = 44/185 (23%)

Query: 662 NFSHENLIGSGSFGSVL---HNE----------------RTGSWKSFIAECETLRNVRHR 702
           +F    +IG G+FG V      +                  GS ++ + E   L+ + H 
Sbjct: 1   HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHP 60

Query: 703 NLVKLITSCSSL-DSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-------LDITSALD 753
            LV L     S  D +NM    LV + L  G L   +    + +E        +I  AL+
Sbjct: 61  FLVNL---WYSFQDEENM---YLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALE 114

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YLH+     ++H D+KP NILLDE+    + DF +A  +       S+        G+ G
Sbjct: 115 YLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTS-------GTPG 164

Query: 814 YVPPE 818
           Y+ PE
Sbjct: 165 YMAPE 169

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 70.0 bits (172), Expect = 5e-13
 Identities = 43/148 (29%), Positives = 67/148 (45%), Gaps = 32/148 (21%)

Query: 669 IGSGSFGSV---LHN-----------ERTGSWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V     N             T S ++F+ E + ++ +RH  LV+L   CS  
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCS-- 71

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALD----------YLHNDCEVPVV 764
                E + +V E++S GSL D++      +L +   +D          YL        +
Sbjct: 72  ---EEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE---SRNYI 125

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFL 792
           H DL   NIL+ E +  K+ DFGLAR +
Sbjct: 126 HRDLAARNILVGENLVCKIADFGLARLI 153

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 69.5 bits (170), Expect = 6e-13
 Identities = 68/276 (24%), Positives = 115/276 (41%), Gaps = 66/276 (23%)

Query: 669 IGSGSFGSVLHNERTGSWKS------------------FIAECETLRNVRHRNLVKLITS 710
           +GSG FG V      G W++                  FI E + +  + H  LV+L   
Sbjct: 12  LGSGQFGVV----HLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCE 760
           C+       + L +V EF+ NG L +++  +R+ +L          D+   ++YL  +  
Sbjct: 68  CT-----QQKPLYIVTEFMENGCLLNYLR-QRQGKLSKDMLLSMCQDVCEGMEYLERN-- 119

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
              +H DL   N L+      KV DFG+ R++L   D++ + SS   F   + + PPE  
Sbjct: 120 -SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVL---DDEYTSSSGAKF--PVKWSPPEVF 173

Query: 821 LGERPSTAGDVPTSESFAGEFNIVKW---VESNLP---ENVLQVLDPELRQLMTSNESQT 874
              + S+  DV +       F ++ W    E  +P   ++  +V++      M S   + 
Sbjct: 174 NFSKYSSKSDVWS-------FGVLMWEVFTEGKMPFEKKSNYEVVE------MISRGFRL 220

Query: 875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL 910
            +     +T+   V  SC  E P GR    E LR +
Sbjct: 221 YRPKLASMTVY-EVMYSCWHEKPEGRPTFAELLRAI 255

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 69.9 bits (172), Expect = 7e-13
 Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 51/188 (27%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G V                  + NE+ G   + I E + L+ +RH N+V+L   
Sbjct: 7   IGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEI 66

Query: 711 CSSLDSKNMEFLALVYEFLS---NGSLGDWIHGERKNELDIT------------SALDYL 755
            +S    +   + +V+E++     G L          E+  T              L YL
Sbjct: 67  VTSKGKGS---IYMVFEYMDHDLTGLL-------DSPEVKFTESQIKCYMKQLLEGLQYL 116

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H++    ++H D+K  NIL++ +   K+ DFGLAR        ++S   T+  + ++ Y 
Sbjct: 117 HSN---GILHRDIKGSNILINNDGVLKLADFGLARPY----TKRNSADYTNR-VITLWYR 168

Query: 816 PPEYGLGE 823
           PPE  LG 
Sbjct: 169 PPELLLGA 176

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 53/210 (25%), Positives = 90/210 (42%), Gaps = 44/210 (20%)

Query: 644 FKVCHPKISYDELRRATGNFSHENLIGSGSFGSV------------------LHNERTGS 685
           F  C     Y++L            IG G+FG V                  + NE+ G 
Sbjct: 5   FPFCDEVSKYEKL----------AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGF 54

Query: 686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA---LVYEF-------LSNGSLG 735
             + + E + L+ ++H N+V LI  C +  +    +     LV+EF       L +    
Sbjct: 55  PITALREIKILQLLKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEHDLAGLLSNKNV 114

Query: 736 DWIHGERKNELD-ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            +   E K  +  + + L Y+H +    ++H D+K  NIL+ ++   K+ DFGLAR    
Sbjct: 115 KFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLARAFSL 171

Query: 795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
             +++ +  +  V   ++ Y PPE  LGER
Sbjct: 172 SKNSKPNRYTNRVV--TLWYRPPELLLGER 199

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 33/159 (20%)

Query: 663 FSHENLIGSGSFGSV---------------LHNERTGSWKSFIAECETLRNVRHRNLVKL 707
           F+ E  +GSG FG V               L ++     + F  E + L+ +RH++L+ L
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISL 67

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALD----------YLHN 757
              CS  +      + ++ E +  GSL  ++       L + S +D          YL  
Sbjct: 68  FAVCSVGEP-----VYIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLE- 121

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
             E   +H DL   NIL+ E++  KV DFGLAR + E V
Sbjct: 122 --EQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDV 158

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 70.6 bits (173), Expect = 2e-12
 Identities = 34/85 (40%), Positives = 49/85 (57%)

Query: 382 LDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEI 441
           L L    + G IP +I +L+ LQ + L+GN I G IP SL ++  L  +DLS N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 442 PISFGNFQSLLSIDLSNNRINGNIP 466
           P S G   SL  ++L+ N ++G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 34/162 (20%)

Query: 662 NFSHENL---IGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVK 706
           N     L   IG G FG+VL  E TG            + ++F+ E   +  + H+NLV+
Sbjct: 4   NLQKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVR 63

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----------ELDITSALDYLH 756
           L      L       L +V E +S G+L +++    +            LD+   ++YL 
Sbjct: 64  L------LGVILHNGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLE 117

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
           +     +VH DL   NIL+ E+  AKV DFGLAR     VDN
Sbjct: 118 SK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDN 156

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 68.1 bits (166), Expect = 2e-12
 Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 38/185 (20%)

Query: 669 IGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS 716
           IG G FG V+  +  G            + ++F+AE   +  +RH NLV+L+        
Sbjct: 14  IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKG 73

Query: 717 KNMEFLALVYEFLSNGSLGDWIH--------GER--KNELDITSALDYLHNDCEVPVVHS 766
                L +V E+++ GSL D++         G+   K  LD+  A++YL  +     VH 
Sbjct: 74  G----LYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHR 126

Query: 767 DLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPS 826
           DL   N+L+ E+  AKV DFGL +         SS   T      + +  PE    ++ S
Sbjct: 127 DLAARNVLVSEDNVAKVSDFGLTK-------EASSTQDTGKL--PVKWTAPEALREKKFS 177

Query: 827 TAGDV 831
           T  DV
Sbjct: 178 TKSDV 182

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 69.6 bits (170), Expect = 2e-12
 Identities = 73/253 (28%), Positives = 111/253 (43%), Gaps = 40/253 (15%)

Query: 307 NKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIY 366
              +    +   S I+ L   T+L  L LD N     IP  IG   + L +L L  N I 
Sbjct: 95  LPSLDLNLNRLRSNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKI- 152

Query: 367 GKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKK 426
             +P+ +  L +L  LDLS+N +S ++P  +  L  L  L L+GN+I   +P  +  L  
Sbjct: 153 ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSA 210

Query: 427 LNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI 486
           L ++DLS N +  E+  S  N ++L  ++LSNN++                         
Sbjct: 211 LEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE------------------------ 245

Query: 487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP 546
                    +LP S+ N  +LE L ++ NQ S    + +  L  L  LDLS N LS ++P
Sbjct: 246 ---------DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALP 294

Query: 547 SDLQNLQALRSLN 559
                L  L  L 
Sbjct: 295 LIALLLLLLELLL 307

Length = 394

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 67.7 bits (165), Expect = 3e-12
 Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 36/186 (19%)

Query: 669 IGSGSFGSV------------LHNERTG--SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V            +   R G  S + FI E + +  + H  LV+L   C+  
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER 71

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL +     V+H
Sbjct: 72  SP-----ICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSN---VIH 123

Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     + 
Sbjct: 124 RDLAARNCLVGENQVVKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWSSPEVFSFSKY 178

Query: 826 STAGDV 831
           S+  DV
Sbjct: 179 SSKSDV 184

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 67.8 bits (165), Expect = 3e-12
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 38/187 (20%)

Query: 669 IGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G              S ++F+ E + ++ +RH  LV+L    S  
Sbjct: 14  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 72

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 73  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 124

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 125 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 179

Query: 825 PSTAGDV 831
            +   DV
Sbjct: 180 FTIKSDV 186

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 44/190 (23%)

Query: 669 IGSGSFGSVLHNERTGSWK------------------SFIAECETLRNVRHRNLVKLITS 710
           +G+G FG V    + G W+                   FI E + +  + H  LV+L   
Sbjct: 12  LGTGQFGVV----KYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYLHNDCEV 761
           C+         + +V E++SNG L +++    K     +L     D+   + YL +    
Sbjct: 68  CTK-----QRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK--- 119

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
             +H DL   N L+D++   KV DFGL+R++L   D++ + S    F   + + PPE  L
Sbjct: 120 QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL---DDEYTSSVGSKF--PVRWSPPEVLL 174

Query: 822 GERPSTAGDV 831
             + S+  DV
Sbjct: 175 YSKFSSKSDV 184

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 66.7 bits (164), Expect = 7e-12
 Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 42/159 (26%)

Query: 663 FSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNL 704
           +     +G G++G V                  L NE  G   + + E   L+ ++H N+
Sbjct: 1   YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNI 60

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT------------SAL 752
           VKL+    +        L LV+E+     L  ++    K    ++              L
Sbjct: 61  VKLLDVIHTERK-----LYLVFEYCDM-DLKKYLD---KRPGPLSPNLIKSIMYQLLRGL 111

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
            Y H+     ++H DLKP NIL++ +   K+ DFGLAR 
Sbjct: 112 AYCHSHR---ILHRDLKPQNILINRDGVLKLADFGLARA 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 44/145 (30%), Positives = 68/145 (46%), Gaps = 21/145 (14%)

Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERK 743
           S      E + +    H N+VK  TS    D      L LV  +LS GSL D +     +
Sbjct: 42  SVDELRKEVQAMSQCNHPNVVKYYTSFVVGDE-----LWLVMPYLSGGSLLDIMKSSYPR 96

Query: 744 NELD----------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
             LD          +   L+YLH++ ++   H D+K GNILL E+ + K+ DFG++  L 
Sbjct: 97  GGLDEAIIATVLKEVLKGLEYLHSNGQI---HRDIKAGNILLGEDGSVKIADFGVSASLA 153

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPE 818
           +  D    +  T  F+G+  ++ PE
Sbjct: 154 DGGDRTRKVRKT--FVGTPCWMAPE 176

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 41/163 (25%), Positives = 77/163 (47%), Gaps = 35/163 (21%)

Query: 655 ELRRATGNFSHENLIGSGSFGSVL------HN---------ERTGSWKSFIAECETLRNV 699
           E+ R   + + ++ +G G +G V       ++         E T   + F+ E   ++ +
Sbjct: 2   EMERT--DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI 59

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------IT 749
           +H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++          I+
Sbjct: 60  KHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQIS 114

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 115 SAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 154

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 36/152 (23%)

Query: 669 IGSGSFGSV---LHNERT---------GSW--KSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V   L N  T         G+   K F+AE + ++ +RH  L++L   C+  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE 73

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALD----------YL--HNDCEVP 762
           +      + +V E +  GSL +++ G     L +   +D          YL   N     
Sbjct: 74  EP-----IYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQN----- 123

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            +H DL   N+L+ E    KV DFGLAR + E
Sbjct: 124 YIHRDLAARNVLVGENNICKVADFGLARVIKE 155

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 32/165 (19%)

Query: 669 IGSGSFGSVL--HNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCSS 713
           IG G+ G V    +  TG             + +  I E   +++ +H N+V    S   
Sbjct: 27  IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDS--- 83

Query: 714 LDSKNMEFLALVYEFLSNGSLGDWI--HGERKNE-------LDITSALDYLHNDCEVPVV 764
                 + L +V E++  GSL D I  +  R NE        ++   L+YLH+     V+
Sbjct: 84  --YLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ---NVI 138

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           H D+K  NILL ++ + K+ DFG A  L +    ++S+  T  +M
Sbjct: 139 HRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWM 183

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 31/152 (20%)

Query: 668 LIGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKL 707
            +G G+FGSV                    L +      + F  E E L++++H N+VK 
Sbjct: 11  QLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKY 70

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------E 760
              C S   +N+    LV E+L  GSL D++  + +  LD    L Y    C        
Sbjct: 71  KGVCYSAGRRNLR---LVMEYLPYGSLRDYLQ-KHRERLDHRKLLLYASQICKGMEYLGS 126

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
              VH DL   NIL++ E   K+GDFGL + L
Sbjct: 127 KRYVHRDLATRNILVESENRVKIGDFGLTKVL 158

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 34/151 (22%)

Query: 668 LIGSGSFGSVL--HNERTG---SWKSFIA-------------ECETLRNVRHRNLVKLIT 709
           L+G GS+G V+   ++ TG   + K F+              E   L+ +RH NLV LI 
Sbjct: 8   LVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIE 67

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEV 761
                  +  + L LV+EF+ +  L D             RK    I   +++ H+    
Sbjct: 68  VF-----RRKKRLYLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSH--- 119

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            ++H D+KP NIL+ +    K+ DFG AR L
Sbjct: 120 NIIHRDIKPENILVSQSGVVKLCDFGFARTL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 64.8 bits (158), Expect = 6e-11
 Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 50/205 (24%)

Query: 639 GVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSF--------- 689
             SA         S  EL R        N IGSG+ G+V       + + +         
Sbjct: 59  SSSASGSAPSAAKSLSELERV-------NRIGSGAGGTVYKVIHRPTGRLYALKVIYGNH 111

Query: 690 --------IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHG 740
                     E E LR+V H N+VK    C  +   N E + ++ EF+  GSL G  I  
Sbjct: 112 EDTVRRQICREIEILRDVNHPNVVK----CHDMFDHNGE-IQVLLEFMDGGSLEGTHIAD 166

Query: 741 ERKNEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
           E+   L      I S + YLH      +VH D+KP N+L++     K+ DFG++R L + 
Sbjct: 167 EQ--FLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQT 221

Query: 796 VD--NQSSISSTHVFMGSIGYVPPE 818
           +D  N S        +G+I Y+ PE
Sbjct: 222 MDPCNSS--------VGTIAYMSPE 238

Length = 353

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 63.9 bits (156), Expect = 6e-11
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 36/155 (23%)

Query: 668 LIGSGSFGSVL--HNERTGSW---KSFIA-------------ECETLRNVRHRNLVKLIT 709
           ++G G++G VL   N+ TG     K F               E + LR +RH N+V L  
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKE 67

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSL--------GDWIHGERKNELDITSALDYLH-NDCE 760
           +           L LV+E++    L        G      R     +  A+ Y H ++  
Sbjct: 68  AFRRKGR-----LYLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNI- 121

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
              +H D+KP NIL+ E    K+ DFG AR L  R
Sbjct: 122 ---IHRDIKPENILVSESGVLKLCDFGFARALRAR 153

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 48/186 (25%)

Query: 662 NFSHENLIGSGSFGSV-LHNERTGSWKSFIA--------------------ECETLRNVR 700
           +      +G+G+FG V L  +R    + + A                    E   L+ V 
Sbjct: 2   DLERIKTVGTGTFGRVHLVRDRIS--EHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVS 59

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NEL------DITSAL 752
           H  +++L    +  D +   FL ++ E++  G L  ++    +  N        +I  AL
Sbjct: 60  HPFIIRLF--WTEHDQR---FLYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCAL 114

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     +V+ DLKP NILLD+E   K+ DFG A+ L +R         T    G+ 
Sbjct: 115 EYLHS---KEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR---------TWTLCGTP 162

Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 163 EYLAPE 168

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 63.1 bits (154), Expect = 8e-11
 Identities = 48/188 (25%), Positives = 75/188 (39%), Gaps = 40/188 (21%)

Query: 667 NLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           N IG G+FG V                  + +    + K    E + L  ++H NLVK  
Sbjct: 6   NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK-- 63

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLHNDCE 760
                ++    E + +  E+ S G+L + +   R  +        L +   L YLH    
Sbjct: 64  --YYGVEVHR-EKVYIFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLH---S 117

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV--FMGSIGYVPPE 818
             +VH D+KP NI LD     K+GDFG A     ++ N ++     V    G+  Y+ PE
Sbjct: 118 HGIVHRDIKPANIFLDHNGVIKLGDFGCAV----KLKNNTTTMGEEVQSLAGTPAYMAPE 173

Query: 819 YGLGERPS 826
              G +  
Sbjct: 174 VITGGKGK 181

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 49/179 (27%), Positives = 67/179 (37%), Gaps = 46/179 (25%)

Query: 669 IGSGSFGSV-----LHNERTGSWKSFI--------------AECETLRNVRHRNLVKLIT 709
           +G G FG V         RT + K                 +E E L    H  +VKL  
Sbjct: 1   LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYR 60

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDC 759
           +    D K +  L    E+   G L   +    +   D          +  A +YLHN  
Sbjct: 61  TFK--DKKYIYML---MEYCLGGELWTILR--DRGLFDEYTARFYIACVVLAFEYLHNR- 112

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              +++ DLKP N+LLD     K+ DFG A+ L        S   T  F G+  YV PE
Sbjct: 113 --GIIYRDLKPENLLLDSNGYVKLVDFGFAKKL-------KSGQKTWTFCGTPEYVAPE 162

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 54/189 (28%)

Query: 667 NLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVR---HRNLV 705
             IG G++G+V                  +     G   S + E   L+ +    H N+V
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIV 64

Query: 706 KLITSCSSLDSKNMEFLALVYE--------FLSNGS--------LGDWIHGERKNELDIT 749
           +L+  C    +     L LV+E        +LS           + D +         + 
Sbjct: 65  RLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMR-------QLL 117

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
             +D+LH+     +VH DLKP NIL+  +   K+ DFGLAR        + +++S  V  
Sbjct: 118 RGVDFLHSHR---IVHRDLKPQNILVTSDGQVKIADFGLARIY----SFEMALTSVVV-- 168

Query: 810 GSIGYVPPE 818
            ++ Y  PE
Sbjct: 169 -TLWYRAPE 176

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 48/152 (31%), Positives = 67/152 (44%), Gaps = 22/152 (14%)

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--- 747
            E + L   +   +VKL    S    KN   L LV E+L  G L   +       LD   
Sbjct: 42  TERDILSQAQSPYVVKLY--YSFQGKKN---LYLVMEYLPGGDLASLLENV--GSLDEDV 94

Query: 748 -------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF-LLERVDNQ 799
                  I  AL+YLH+     ++H DLKP NIL+D     K+ DFGL++  L+ R  N 
Sbjct: 95  ARIYIAEIVLALEYLHS---NGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINL 151

Query: 800 SSISS-THVFMGSIGYVPPEYGLGERPSTAGD 830
           +         +G+  Y+ PE  LG+  S   D
Sbjct: 152 NDDEKEDKRIVGTPDYIAPEVILGQGHSKTVD 183

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 63.1 bits (153), Expect = 3e-10
 Identities = 83/333 (24%), Positives = 134/333 (40%), Gaps = 20/333 (6%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV-PSTIYNMTSLVHLRLASNQLGGEIP 241
           + P SI    P        +  L L ++     + PS++  + SL  L  +         
Sbjct: 28  TTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSE 87

Query: 242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
             +       LD     NR        L  LTN+  + + +N +    P        L+ 
Sbjct: 88  NLLNLLPLPSLDLNL--NRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKE 144

Query: 302 YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
            ++  NKI         S  + L N  +L  L L  N     +P+ + N  + L+ L L 
Sbjct: 145 LDLSDNKI--------ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNNLDLS 194

Query: 362 GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
           GN I   +P  I  L +L  LDLS NSI  E+   +  L+ L  L L+ N++   +P S+
Sbjct: 195 GNKI-SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKL-EDLPESI 251

Query: 422 ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLE 481
            NL  L  +DLS N+++     S G+  +L  +DLS N ++  +P   L  L  E   L 
Sbjct: 252 GNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLE-LLLN 308

Query: 482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY 514
            ++T+   +  L+  L N+            A 
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEAL 341

Length = 394

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 31/170 (18%)

Query: 663 FSHENLIGSGSFGSV---LHNER-----------TGSWKSFIAECETLRNVRHRNLVKLI 708
           F     +G GS+GSV   +H E                +  I E   L+      +VK  
Sbjct: 5   FDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYY 64

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELDITS-------ALDYLHNDC 759
               S        L +V E+   GS+ D +    K   E +I +        L+YLH+  
Sbjct: 65  ---GSYFKNTD--LWIVMEYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHS-- 117

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
               +H D+K GNILL+EE  AK+ DFG++  L + +  ++++  T  +M
Sbjct: 118 -NKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWM 166

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 64/247 (25%), Positives = 108/247 (43%), Gaps = 51/247 (20%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFI------------------AECETLRNVRHRN 703
            +    ++G G+FG V    R    K  I                   EC+ L+ + H N
Sbjct: 1   KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN 60

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY-------LH 756
           +++   +   L+ K    L +V E+   G+L ++I     + LD  + L +       LH
Sbjct: 61  IIEYYEN--FLEDKA---LMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALH 115

Query: 757 NDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           +     ++H DLK  NILLD+ +M  K+GDFG+++ L       SS S  +  +G+  Y+
Sbjct: 116 HVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKIL-------SSKSKAYTVVGTPCYI 168

Query: 816 PPEYGLGERPSTAGDVPTSESFAGEFNIVK--WVESNLPENVLQVL-----------DPE 862
            PE   G+  +   D+        E   +K  +  +NLP  VL+++            P+
Sbjct: 169 SPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMSGTFAPISDRYSPD 228

Query: 863 LRQLMTS 869
           LRQL+ S
Sbjct: 229 LRQLILS 235

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 62.1 bits (151), Expect = 3e-10
 Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 57/207 (27%)

Query: 640 VSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLH--NERTGS------------ 685
           ++ LF    P+  + +LR           IG GSFG+V    + RT              
Sbjct: 4   IAELFSKDDPEKLFTDLRE----------IGHGSFGAVYFARDVRTNEVVAIKKMSYSGK 53

Query: 686 -----WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
                W+  I E   L+ +RH N ++    C   +        LV E+   GS  D +  
Sbjct: 54  QSNEKWQDIIKEVRFLQQLRHPNTIEY-KGCYLREHTAW----LVMEYCL-GSASDILEV 107

Query: 741 ERK--NELDIT-------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
            +K   E++I          L YLH+   +   H D+K GNILL E  T K+ DFG A  
Sbjct: 108 HKKPLQEVEIAAICHGALQGLAYLHSHERI---HRDIKAGNILLTEPGTVKLADFGSA-- 162

Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPE 818
                   S +S  + F+G+  ++ PE
Sbjct: 163 --------SLVSPANSFVGTPYWMAPE 181

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 27/145 (18%)

Query: 669 IGSGSFGSV---LHN-----------ERTGSWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V    +N           + + S ++F+AE   ++ ++H  LV+L    +  
Sbjct: 14  LGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQ- 72

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   +D      E          +H D
Sbjct: 73  -----EPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRD 127

Query: 768 LKPGNILLDEEMTAKVGDFGLARFL 792
           L+  NIL+ E +  K+ DFGLAR +
Sbjct: 128 LRAANILVSETLCCKIADFGLARLI 152

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 61.0 bits (148), Expect = 4e-10
 Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 32/180 (17%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF 721
           +F   N IG GSFG V    R    + +  +   L  +  R   + I     L   +  +
Sbjct: 1   DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY 60

Query: 722 -------------LALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHND 758
                        L +V E+  NG L   +  +R   L           I   L +LH+ 
Sbjct: 61  IIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK 120

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
               ++H D+K  N+ LD     K+GD G+A+ L     + ++ ++T V  G+  Y+ PE
Sbjct: 121 ---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLL----SDNTNFANTIV--GTPYYLSPE 171

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 61.2 bits (149), Expect = 4e-10
 Identities = 42/165 (25%), Positives = 61/165 (36%), Gaps = 47/165 (28%)

Query: 668 LIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRHRN 703
            +G GSFG V    R G W +                        F+ E   + ++ H N
Sbjct: 2   KLGDGSFGVV----RRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHEN 57

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALD 753
           L++L      L    M    +V E    GSL D +  +                I + + 
Sbjct: 58  LIRLYGVV--LTHPLM----MVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMR 111

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
           YL +      +H DL   NILL  +   K+GDFGL R L +  D+
Sbjct: 112 YLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDH 153

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.5 bits (152), Expect = 6e-10
 Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 25/110 (22%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           IP+D+S+L +L+ ++L+ N + G +P ++ ++TSL  L L+                   
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS------------------- 474

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
                 +N F G IP SL  LT+++I+ +  N L G +P  LG     R 
Sbjct: 475 ------YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRA 518

Length = 623

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 41/152 (26%), Positives = 58/152 (38%), Gaps = 37/152 (24%)

Query: 669 IGSGSFGSV-------------------LHNERTGSWKS-FIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                   L  E   + K  F+ E   +  + H  +V+LI
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELDIT-------SALDYLHNDCE 760
             C        E L LV E    G L  ++   R+    D+          + YL     
Sbjct: 63  GVCKG------EPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLE---S 113

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
              VH DL   N+LL     AK+ DFG++R L
Sbjct: 114 KHFVHRDLAARNVLLVNRHQAKISDFGMSRAL 145

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 39/175 (22%)

Query: 669 IGSGSFGSV--LHNERTGSWKS--------------FIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    ++ TG + +              F+ E + L   +H N+V L     
Sbjct: 13  LGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLY-EAY 71

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPV 763
             ++K    L ++ EF   G+L   +     G  + ++      +  AL++LH+     V
Sbjct: 72  FYENK----LWILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH---KV 124

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H DLK GNILL  +   K+ DFG++        N+S++     F+G+  ++ PE
Sbjct: 125 IHRDLKAGNILLTLDGDVKLADFGVS------AKNKSTLQKRDTFIGTPYWMAPE 173

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 42/188 (22%), Positives = 68/188 (36%), Gaps = 41/188 (21%)

Query: 669 IGSGSFGSV----------------LHNERTGSW--KSFIAECETLRNVRHRNLVKLITS 710
           IG G+ G V                +   R         + E + L+  +H  +VKL+  
Sbjct: 8   IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELDITS-------ALDYLHNDCEV 761
                        LV E++    L + +  E +   E  + S        + Y+H     
Sbjct: 68  FPHGSG-----FVLVMEYMP-SDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMH---AN 118

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
            ++H DLKP N+L+  +   K+ DFGLAR        +     +H  + +  Y  PE   
Sbjct: 119 GIMHRDLKPANLLISADGVLKIADFGLARLF----SEEEPRLYSHQ-VATRWYRAPELLY 173

Query: 822 GERPSTAG 829
           G R    G
Sbjct: 174 GARKYDPG 181

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 32/184 (17%)

Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ K              +F+ E + ++ +RH  LV L    S  
Sbjct: 14  LGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSE- 72

Query: 715 DSKNMEFLALVYEFLSNGSL------GDWIHGERKNELDITSAL-DYLHNDCEVPVVHSD 767
                E + +V EF+  GSL      GD  + +    +D+ + + D +     +  +H D
Sbjct: 73  -----EPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRD 127

Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPST 827
           L+  NIL+ + +  K+ DFGLAR L+E  DN+ +      F   I +  PE  L  R + 
Sbjct: 128 LRAANILVGDNLVCKIADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGRFTI 182

Query: 828 AGDV 831
             DV
Sbjct: 183 KSDV 186

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 96  FLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKI 155
           F+  + L N  L G +P +I  L  L+ +N+S N+++G +P ++  +T L++LDL  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSI 188
            G +  + L  L SL++LN   N L G +P ++
Sbjct: 479 NGSIP-ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.0 bits (148), Expect = 2e-09
 Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)

Query: 314 DDEGL-SFITS-LTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
           D++GL  FI + ++   HL  + L GN   G IP S+G+ ++ L  L L  N   G IP 
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPE 484

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIG 398
           S+G+L SL +L+L+ NS+SG +P  +G
Sbjct: 485 SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 56/255 (21%), Positives = 100/255 (39%), Gaps = 68/255 (26%)

Query: 668 LIGSGSFGSVL-------------------------HNERTGSW-KSFIAECETLRNVRH 701
           LIG G++G V                          H+ R     K+  +E ETL+++ H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT--------SALD 753
            N+V+ +   ++ +      L++  E++  GS+G  +    + E  +           L 
Sbjct: 68  LNIVQYLGFETTEEY-----LSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLA 122

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR------------------FLL-- 793
           YLH+     ++H DLK  N+L+D +   K+ DFG+++                  F +  
Sbjct: 123 YLHSK---GILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAP 179

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVES-NLP 852
           E + + S   S  V + S+G V  E   G RP +       E+ A  F +     +  +P
Sbjct: 180 EVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWS-----DEEAIAAMFKLGNKRSAPPIP 234

Query: 853 ENVLQVLDPELRQLM 867
            +V   L P     +
Sbjct: 235 PDVSMNLSPVALDFL 249

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 59.1 bits (143), Expect = 2e-09
 Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 34/150 (22%)

Query: 669 IGSGSFGSVL------HNERTGSW---------------KSFIAECETLRNVRHRNLVKL 707
           +G G FG V        N+ TG                   +  E   L+ + H N+VK 
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE------- 760
              CS    K    L L+ E++  GSL D++    K++L++   L +    CE       
Sbjct: 72  KGCCSEQGGKG---LQLIMEYVPLGSLRDYL---PKHKLNLAQLLLFAQQICEGMAYLHS 125

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              +H DL   N+LLD +   K+GDFGLA+
Sbjct: 126 QHYIHRDLAARNVLLDNDRLVKIGDFGLAK 155

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 51/199 (25%), Positives = 85/199 (42%), Gaps = 40/199 (20%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG-------------------SWKSFIAECETLRNVR 700
           N+    L+G G+FG V   ++  TG                      +   E + L+N++
Sbjct: 3   NWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQ 62

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSAL 752
           H  +V+    C   D    E L++  E++  GS+ D +  +G       RK    I   +
Sbjct: 63  HERIVQYY-GCLRDD----ETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGV 117

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH++    +VH D+K  NIL D     K+GDFG ++ L     + + + S     G+ 
Sbjct: 118 EYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVT---GTP 171

Query: 813 GYVPPEYGLGERPSTAGDV 831
            ++ PE   GE      DV
Sbjct: 172 YWMSPEVISGEGYGRKADV 190

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 59.4 bits (144), Expect = 3e-09
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 26/138 (18%)

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---- 746
           AE   L  V+H  +V LI +  +   K    L L+ E+LS G L  ++H ER+       
Sbjct: 49  AERNILEAVKHPFIVDLIYAFQT-GGK----LYLILEYLSGGEL--FMHLEREGIFMEDT 101

Query: 747 ------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
                 +I+ AL++LH   +  +++ DLKP NILLD +   K+ DFGL +      ++  
Sbjct: 102 ACFYLSEISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCK------ESIH 152

Query: 801 SISSTHVFMGSIGYVPPE 818
             + TH F G+I Y+ PE
Sbjct: 153 EGTVTHTFCGTIEYMAPE 170

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 52.7 bits (127), Expect = 4e-09
 Identities = 23/43 (53%), Positives = 32/43 (74%), Gaps = 2/43 (4%)

Query: 26 INTDKEALMSFKSQISQESPSSPLSYWNPSSS-PCTWPGVICN 67
          +N D++AL++FKS ++   PS  LS WNPSSS PC+W GV C+
Sbjct: 1  LNDDRDALLAFKSSLN-GDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 59.2 bits (143), Expect = 5e-09
 Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 13/216 (6%)

Query: 385 SYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS 444
             ++    +P  + +L  L +L  +G     G  N L NL  L  +DL+ N L   I   
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLL-NLLPLPSLDLNLNRLRSNISEL 112

Query: 445 FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC 504
                +L S+DL NN I    P  ++  L   +  L      DLSDN +  +LP+ L+N 
Sbjct: 113 L-ELTNLTSLDLDNNNITDIPP--LIGLLKSNLKEL------DLSDNKIE-SLPSPLRNL 162

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN 564
            +L+ L +++N  S  +P +++ L  L  LDLS NK+S  +P +++ L AL  L+L+ N+
Sbjct: 163 PNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS 220

Query: 565 LEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRS 600
           +  ++ S    +N+S + L  N    L     N  +
Sbjct: 221 IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Length = 394

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 44/180 (24%)

Query: 668 LIGSGSFGSVLH--NERTGSW---------------KSFIAECET----LRNVRHRNLVK 706
           L+GSGSFGSV    N   G +               +  + + E     L  ++H N+V+
Sbjct: 7   LLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQ 66

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL------DITSALDYLHND 758
            + +    D+  + FL    E +  GSL   +  +G     +       I   L+YLH+ 
Sbjct: 67  YLGTEREEDNLYI-FL----ELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDR 121

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
                VH D+K  NIL+D     K+ DFG+A+ ++E     S   S   F GS  ++ PE
Sbjct: 122 ---NTVHRDIKGANILVDTNGVVKLADFGMAKQVVE----FSFAKS---FKGSPYWMAPE 171

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 58.0 bits (141), Expect = 6e-09
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 40/155 (25%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNL----------VKLITSCS 712
           F+    IG GSFG V        +K+       +  ++  +L           + I   S
Sbjct: 3   FTLLECIGKGSFGEV--------YKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLS 54

Query: 713 SLDS-----------KNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDY 754
              S           K  + L ++ E+   GS  D +   + +E        ++   L+Y
Sbjct: 55  QCRSPYITKYYGSFLKGSK-LWIIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEY 113

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
           LH +     +H D+K  NILL EE   K+ DFG++
Sbjct: 114 LHEE---GKIHRDIKAANILLSEEGDVKLADFGVS 145

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 49/162 (30%)

Query: 666 ENLIGSGSFGSV----------------LHNERTGS----WKSFIAECETLRNVRHRNLV 705
           E +IG G FG V                +   + GS       F+ E   +    H N++
Sbjct: 9   EKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNII 68

Query: 706 KL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITS 750
           +L   +T    +    M    ++ E++ NGSL  ++   R+N+              I S
Sbjct: 69  RLEGVVTKSRPV----M----IITEYMENGSLDKFL---RENDGKFTVGQLVGMLRGIAS 117

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            + YL        VH DL   NIL++  +  KV DFGL+R L
Sbjct: 118 GMKYLSEMN---YVHRDLAARNILVNSNLVCKVSDFGLSRRL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 57.7 bits (139), Expect = 6e-09
 Identities = 52/187 (27%), Positives = 84/187 (44%), Gaps = 38/187 (20%)

Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G+ K              SF+ E + ++ +RH  LV+L    S  
Sbjct: 14  LGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSE- 72

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIH-GERKN---------ELDITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++  GE +             + + + Y+     +  +
Sbjct: 73  -----EPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYI 124

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ + +  K+ DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 125 HRDLRSANILVGDGLVCKIADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 179

Query: 825 PSTAGDV 831
            +   DV
Sbjct: 180 FTIKSDV 186

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 57.9 bits (141), Expect = 6e-09
 Identities = 44/162 (27%), Positives = 64/162 (39%), Gaps = 51/162 (31%)

Query: 669 IGSGSFGSVL--HNERTG-------------SWKSFIAECETLRNVR-------HRNLVK 706
           +G G+FGSV    N+ TG             SW+    EC  LR V+       H N+VK
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWE----ECMNLREVKSLRKLNEHPNIVK 62

Query: 707 L---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALD 753
           L          ++     L  V+E++  G+L   +   +               I   L 
Sbjct: 63  LKEVF-----RENDE---LYFVFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLA 113

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
           ++H        H DLKP N+L+      K+ DFGLAR +  R
Sbjct: 114 HIHK---HGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR 152

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 46/190 (24%)

Query: 669 IGSGSFGSV-LHNER-TGSW-------KSFIAECETLRNVRHRNLVKLITSCS------- 712
           I  G+FGSV L  +R TG +       KS +     + NV+    + +I   S       
Sbjct: 4   ISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLY 63

Query: 713 -SLDSKNMEFLALVYEFLSNGSLG-----------DWIHGERKNELDITSALDYLHNDCE 760
            S  SK  ++L LV E+L+ G              DW    ++   ++   ++ LH    
Sbjct: 64  YSFQSK--DYLYLVMEYLNGGDCASLIKTLGGLPEDWA---KQYIAEVVLGVEDLHQR-- 116

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H D+KP N+L+D+    K+ DFGL+R  LE             F+G+  Y+ PE  
Sbjct: 117 -GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLENKK----------FVGTPDYLAPETI 165

Query: 821 LGERPSTAGD 830
           LG       D
Sbjct: 166 LGVGDDKMSD 175

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 58.1 bits (140), Expect = 8e-09
 Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF-------------------IAECETL-RNVRHRNLVKL 707
           +IG GSFG VL  +R    K +                   +AE   L +NV+H  LV L
Sbjct: 2   VIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGL 61

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
             S  + +      L  V +F++ G L  + H +R+             +I SAL YLH+
Sbjct: 62  HYSFQTTEK-----LYFVLDFVNGGEL--FFHLQRERSFPEPRARFYAAEIASALGYLHS 114

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              + +V+ DLKP NILLD +    + DFGL +  + + D      +T  F G+  Y+ P
Sbjct: 115 ---INIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD------TTTTFCGTPEYLAP 165

Query: 818 E 818
           E
Sbjct: 166 E 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 36/175 (20%)

Query: 669 IGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM--------- 719
           IG GSFG VL  +     K +  +    + +  +   K I +  ++  KN+         
Sbjct: 3   IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH 62

Query: 720 ------EFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPV 763
                 + L  V ++++ G L  + H +R+             +I SAL YLH    + +
Sbjct: 63  YSFQTADKLYFVLDYVNGGEL--FFHLQRERSFPEPRARFYAAEIASALGYLH---SLNI 117

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           ++ DLKP NILLD +    + DFGL +  +E         +T  F G+  Y+ PE
Sbjct: 118 IYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK------TTSTFCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 58.2 bits (140), Expect = 8e-09
 Identities = 51/178 (28%), Positives = 79/178 (44%), Gaps = 41/178 (23%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRNLVKLI 708
           L+G G+FG V+      S K +                   + E   L+N RH  L  L 
Sbjct: 2   LLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLK 61

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
            S  + D      L  V E+++ G L   +  ER    D        I SALDYLH+   
Sbjct: 62  YSFQTKDR-----LCFVMEYVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSG-- 114

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             +V+ DLK  N++LD++   K+ DFGL +   E + + +++ +   F G+  Y+ PE
Sbjct: 115 -KIVYRDLKLENLMLDKDGHIKITDFGLCK---EGITDAATMKT---FCGTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 58.0 bits (141), Expect = 9e-09
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 20/111 (18%)

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITS 750
           H N+VKL+   + + ++N + + LV+E++    L   I   R N L+          +  
Sbjct: 66  HPNIVKLL---NVIKAENDKDIYLVFEYMET-DLHAVI---RANILEDVHKRYIMYQLLK 118

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS 801
           AL Y+H+     V+H DLKP NILL+ +   K+ DFGLAR L E  +N  +
Sbjct: 119 ALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPEN 166

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 54/191 (28%)

Query: 668 LIGSGSFGSV-------------------LHN--------ERTGSWKSFIAECETLR-NV 699
            +GSG+FG V                   +HN        ER  S    ++E   ++  +
Sbjct: 7   HLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQL 66

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH-----GERKNE-------LD 747
           RH N+V+   +    D      L +V + +    LG+  +      +R  E       + 
Sbjct: 67  RHPNIVRYYKTFLENDR-----LYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQ 121

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           +  AL YLH   E  +VH DL P NI+L E+    + DFGLA+    +   +S ++S   
Sbjct: 122 MVLALRYLHK--EKRIVHRDLTPNNIMLGEDDKVTITDFGLAK----QKQPESKLTSV-- 173

Query: 808 FMGSIGYVPPE 818
            +G+I Y  PE
Sbjct: 174 -VGTILYSCPE 183

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 11/106 (10%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSA 751
           E E LRN+ H N+VK    C+      ++   L+ EFL +GSL +++    KN++++   
Sbjct: 56  EIEILRNLYHENIVKYKGICTEDGGNGIK---LIMEFLPSGSLKEYL-PRNKNKINLKQQ 111

Query: 752 LDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           L Y    C+          VH DL   N+L++ E   K+GDFGL +
Sbjct: 112 LKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 157

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)

Query: 148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL 207
           L L    + G + +D +  LR LQ +N   N + G+IPPS+ + I S       L+VLDL
Sbjct: 423 LGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGS-ITS-------LEVLDL 473

Query: 208 TINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
           + N   G++P ++  +TSL  L L  N L G +P
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 56.8 bits (138), Expect = 2e-08
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 24/114 (21%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT 749
           + E + L+ ++H N++ L+             + LV+EF+      D     +   + +T
Sbjct: 50  LREIKLLQELKHPNIIGLLDVFGHKS-----NINLVFEFME----TDLEKVIKDKSIVLT 100

Query: 750 SA------------LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
            A            L+YLH++    ++H DLKP N+L+  +   K+ DFGLAR 
Sbjct: 101 PADIKSYMLMTLRGLEYLHSNW---ILHRDLKPNNLLIASDGVLKLADFGLARS 151

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 56.7 bits (137), Expect = 2e-08
 Identities = 63/219 (28%), Positives = 93/219 (42%), Gaps = 46/219 (21%)

Query: 657 RRATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRN 698
           +R    F     IG G++G V                  L NE+ G   + I E + LR 
Sbjct: 3   KRCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQ 62

Query: 699 VRHRNLVKL----ITSCSSLD-SKNMEFLALVYEFLSNGSLG-----------DWIHGER 742
           + HRN+V L         +LD  K+     LV+E++ +  +G           D I    
Sbjct: 63  LNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFM 122

Query: 743 KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
           K  L+    L+Y H       +H D+K  NILL+ +   K+ DFGLAR      +++ S 
Sbjct: 123 KQLLE---GLNYCHKK---NFLHRDIKCSNILLNNKGQIKLADFGLARLY----NSEESR 172

Query: 803 SSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGE 840
             T+  + ++ Y PPE  LG ER   A DV +     GE
Sbjct: 173 PYTNKVI-TLWYRPPELLLGEERYGPAIDVWSCGCILGE 210

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 39/175 (22%)

Query: 669 IGSGSFGSVL--HNERTGS--------------WKSFIAECETLRNVRHRNLVKLITSCS 712
           IGSG++G V    +  TG               ++    E   L+  RH N+V    S  
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYL 70

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELDIT-------SALDYLHNDCEVPV 763
             D      L +V E+   GSL D     R   +EL I          L YLH   E   
Sbjct: 71  RRDK-----LWIVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLH---ETGK 122

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H D+K  NILL E+   K+ DFG++  L       ++I+    F+G+  ++ PE
Sbjct: 123 IHRDIKGANILLTEDGDVKLADFGVSAQL------TATIAKRKSFIGTPYWMAPE 171

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 44/158 (27%), Positives = 68/158 (43%), Gaps = 36/158 (22%)

Query: 667 NLIGSGSFGSVLH--------NERTGSWKS------------FIAECETLRNVRHRNLVK 706
            +IG G FG V H         +   + KS            F+ E   +++  H N++ 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C  L S+    + L Y  + +G L ++I  E  N          L +   ++YL +
Sbjct: 61  LLGIC--LPSEGSPLVVLPY--MKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLAS 116

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                 VH DL   N +LDE  T KV DFGLAR + ++
Sbjct: 117 K---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDK 151

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 9/72 (12%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++  ALD+LH+   + +++ DLKP NILLDEE   K+ DFGL++   E +D++      +
Sbjct: 106 ELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHE---KKAY 156

Query: 807 VFMGSIGYVPPE 818
            F G++ Y+ PE
Sbjct: 157 SFCGTVEYMAPE 168

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 56.4 bits (136), Expect = 3e-08
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 44/184 (23%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAEC----ETLR--NVRHRNLVKLITS----- 710
           +F     +G+GSFG V   +  G+ + +  +C    E L+   V+H    K I       
Sbjct: 19  DFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHP 78

Query: 711 ------CSSLDSKNMEFLALVYEFLSNGSLGDWIH----GERKNEL------DITSALDY 754
                 CS  D   + FL    EF+  G L  + H    G   N++      ++  A +Y
Sbjct: 79  FIVNMMCSFQDENRVYFL---LEFVVGGEL--FTHLRKAGRFPNDVAKFYHAELVLAFEY 133

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH+     +++ DLKP N+LLD +   KV DFG A+ + +R         T    G+  Y
Sbjct: 134 LHS---KDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDR---------TFTLCGTPEY 181

Query: 815 VPPE 818
           + PE
Sbjct: 182 LAPE 185

Length = 329

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 27/148 (18%)

Query: 666 ENLIGSGSFGSV---LHNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSC 711
           E  +G+G FG V    +N+ T            S ++F+AE   ++ ++H  LVKL    
Sbjct: 11  EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV 70

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVV 764
           +       E + ++ EF++ GSL D++  +  ++  +   +D+     E          +
Sbjct: 71  TK------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI 124

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFL 792
           H DL+  NIL+   +  K+ DFGLAR +
Sbjct: 125 HRDLRAANILVSASLVCKIADFGLARVI 152

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 56.2 bits (135), Expect = 3e-08
 Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 40/178 (22%)

Query: 668 LIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHRNLVKLI 708
           L+G G+FG V+    + TG + +                  + E   L+N RH  L  L 
Sbjct: 2   LLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALK 61

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSL-----GDWIHGERKNEL---DITSALDYLHNDCE 760
            S  + D      L  V E+ + G L      + +  E +      +I SALDYLH++  
Sbjct: 62  YSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKN 116

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           V  V+ DLK  N++LD++   K+ DFGL +   E + + +++ +   F G+  Y+ PE
Sbjct: 117 V--VYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKT---FCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 55.4 bits (133), Expect = 3e-08
 Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 31/171 (18%)

Query: 669 IGSGSFGSV----LHNER----------TGSWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V     +N            T S ++F+ E   ++ ++H  LV+L    +  
Sbjct: 14  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVT-- 71

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E+++ GSL D++  +   ++ +   +D+     E          +H D
Sbjct: 72  ---KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 128

Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  N+L+ E +  K+ DFGLAR +    DN+ +      F   I +  PE
Sbjct: 129 LRAANVLVSESLMCKIADFGLARVI---EDNEYTAREGAKF--PIKWTAPE 174

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 31/154 (20%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 1   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 60

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHN------ 757
           +VKL+    + +      L LV+EFL +  L  ++     + + +     YL        
Sbjct: 61  IVKLLDVIHTENK-----LYLVFEFL-HQDLKKFMDASPLSGIPLPLIKSYLFQLLQGLA 114

Query: 758 DCEV-PVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            C    V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 115 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLAR 148

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 27/195 (13%)

Query: 76  LNLSSFGLEGTISPHIG-----NLSFLRSIQLQNNKLSGNLPREIGNLFR----LRVLNI 126
           L L++ GL       +          L  + L  N+L G     +    R    L+ LN+
Sbjct: 113 LKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL 172

Query: 127 SFNNLQGE----LPVNISKLTELKMLDLMANKIT---GRVTDDQLRNLRSLQVLNFGKNL 179
           + N +       L   +     L++LDL  N +T        + L +L+SL+VLN G N 
Sbjct: 173 ANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232

Query: 180 L--WGSIPPSIANLIPSDLSRLENLKVLDLTINRL----AGTVPSTIYNMTSLVHLRLAS 233
           L   G      A L  + LS   +L  L L+ N +    A  +   +    SL+ L L  
Sbjct: 233 LTDAG-----AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287

Query: 234 NQLGGEIPYDVRDTL 248
           N+ G E    + ++L
Sbjct: 288 NKFGEEGAQLLAESL 302

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.7 bits (137), Expect = 5e-08
 Identities = 22/61 (36%), Positives = 38/61 (62%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           +NLS   + G I P +G+++ L  + L  N  +G++P  +G L  LR+LN++ N+L G +
Sbjct: 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRV 506

Query: 136 P 136
           P
Sbjct: 507 P 507

Length = 623

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 55.6 bits (134), Expect = 5e-08
 Identities = 54/178 (30%), Positives = 78/178 (43%), Gaps = 41/178 (23%)

Query: 668 LIGSGSFGSVL--HNERTGSW-------KSFI----------AECETLRNVRHRNLVKLI 708
           L+G G+FG V+    + TG +       K  I           E   L+N RH  L  L 
Sbjct: 2   LLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALK 61

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
            S  + D      L  V E+ + G L   +  ER    D        I SAL YLH+ C+
Sbjct: 62  YSFQTHD-----RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHS-CD 115

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           V  V+ DLK  N++LD++   K+ DFGL +      +  S  ++   F G+  Y+ PE
Sbjct: 116 V--VYRDLKLENLMLDKDGHIKITDFGLCK------EGISDGATMKTFCGTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 34/150 (22%)

Query: 669 IGSGSFGSVLH--NERTGS-------WKSFIA---------ECETLRNVRHRNLVKLI-- 708
           +GSG++G+V    + RTG+       ++ F +         E   L++++H N++ L+  
Sbjct: 23  VGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDV 82

Query: 709 -TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHNDCE 760
            T   SLD  + +F  LV  F+    LG  +  E+ +E         +   L Y+H    
Sbjct: 83  FTPDLSLDRFH-DFY-LVMPFMGT-DLGKLMKHEKLSEDRIQFLVYQMLKGLKYIH---A 136

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             ++H DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 137 AGIIHRDLKPGNLAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 55.4 bits (133), Expect = 6e-08
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 45/180 (25%)

Query: 668 LIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHRNLVKLI 708
           L+G G+FG V+    + TG + +                  + E   L+N RH  L  L 
Sbjct: 2   LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 61

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHND 758
            +  + D      L  V E+ + G L  + H  R+             +I SAL+YLH+ 
Sbjct: 62  YAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSALEYLHSR 114

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
               VV+ D+K  N++LD++   K+ DFGL +   E + + +++ +   F G+  Y+ PE
Sbjct: 115 ---DVVYRDIKLENLMLDKDGHIKITDFGLCK---EGISDGATMKT---FCGTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 55.2 bits (133), Expect = 6e-08
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 38/177 (21%)

Query: 668 LIGSGSFGSVLHNERTGS---------WKSFI-----AECETLRNVRHRNLVK----LIT 709
           ++G GSFG V+  E  G+          K  I      +C T+   R   L      L  
Sbjct: 2   VLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDC-TMTEKRILALAAKHPFLTA 60

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLHNDCEV 761
                 +K+  F   V E+++ G L   I   RK +         ++T AL +LH     
Sbjct: 61  LHCCFQTKDRLFF--VMEYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRH--- 115

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            V++ DLK  NILLD E   K+ DFG+ +      +   +  +T  F G+  Y+ PE
Sbjct: 116 GVIYRDLKLDNILLDAEGHCKLADFGMCK------EGILNGVTTTTFCGTPDYIAPE 166

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 35/158 (22%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD- 747
           F+ E   +R   H ++VKLI   +         + +V E    G L  ++    K  LD 
Sbjct: 54  FLQEAYIMRQFDHPHIVKLIGVITE------NPVWIVMELAPLGELRSYLQ-VNKYSLDL 106

Query: 748 ---------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
                    +++AL YL +      VH D+   N+L+      K+GDFGL+R+L    ++
Sbjct: 107 ASLILYSYQLSTALAYLES---KRFVHRDIAARNVLVSSPDCVKLGDFGLSRYL----ED 159

Query: 799 QSSISSTHVFMGSIGYVP-----PEYGLGERPSTAGDV 831
           +S       +  S G +P     PE     R ++A DV
Sbjct: 160 ES------YYKASKGKLPIKWMAPESINFRRFTSASDV 191

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 54.7 bits (132), Expect = 8e-08
 Identities = 50/161 (31%), Positives = 71/161 (44%), Gaps = 36/161 (22%)

Query: 658 RATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNV 699
           R+   F   N IG G++G V                  + NER G   S + E   L N+
Sbjct: 4   RSVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNL 63

Query: 700 RHRNLVKL--ITSCSSLDSKNMEFLALVYEFLSN--GSLGD-----WIHGERKN-ELDIT 749
           RH N+V+L  +     LDS     + LV E+      SL D     +   + K   L + 
Sbjct: 64  RHPNIVELKEVVVGKHLDS-----IFLVMEYCEQDLASLLDNMPTPFSESQVKCLMLQLL 118

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             L YLH +    ++H DLK  N+LL ++   K+ DFGLAR
Sbjct: 119 RGLQYLHENF---IIHRDLKVSNLLLTDKGCLKIADFGLAR 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 40/153 (26%)

Query: 669 IGSGSFGSVLHNERTGSWKS-------------------FIAECETLRNVRHRNLVKLIT 709
           IG+G FG V+  E    +                     F+ E +  R+++H NL++ + 
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLG 62

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-------------DITSALDYLH 756
            C+ +      +L LV EF   G L  ++   RK EL             +I   L +LH
Sbjct: 63  QCTEV----TPYL-LVMEFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLH 117

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
            +     +HSDL   N LL  ++T K+GD+GL+
Sbjct: 118 KN---NFIHSDLALRNCLLTADLTVKIGDYGLS 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 669 IGSGSFGSVL--HNERTG----------SWKSFIAECETLRNVR------HRNLVKL--- 707
           IG G++G V    ++ TG           ++S       LR ++      H N++KL   
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDV 66

Query: 708 ITSCSSLDSKNMEFL-ALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHS 766
                 L     EF+   +Y+ + +   G      +     +   L + H+     ++H 
Sbjct: 67  FRHKGDL-YLVFEFMDTDLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH---GILHR 122

Query: 767 DLKPGNILLDEEMTAKVGDFGLAR 790
           DLKP N+L++ E   K+ DFGLAR
Sbjct: 123 DLKPENLLINTEGVLKLADFGLAR 146

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 55.2 bits (133), Expect = 2e-07
 Identities = 41/166 (24%), Positives = 65/166 (39%), Gaps = 21/166 (12%)

Query: 678 LHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW 737
              E       F  E      + H N+V L+ S  +        L  V+E++   +L + 
Sbjct: 14  DAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPP----GLLFAVFEYVPGRTLREV 69

Query: 738 IHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDF 786
           +  +         +  L +  AL   HN     +VH DLKP NI++        AKV DF
Sbjct: 70  LAADGALPAGETGRLMLQVLDALACAHNQ---GIVHRDLKPQNIMVSQTGVRPHAKVLDF 126

Query: 787 GLARFL--LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGD 830
           G+   L  +   D   +++ T   +G+  Y  PE   GE  +   D
Sbjct: 127 GIGTLLPGVRDADVA-TLTRTTEVLGTPTYCAPEQLRGEPVTPNSD 171

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 45/188 (23%)

Query: 662 NFSHENLIGSGSFGSV-----LHNERTGSWKSF--------------IAECETLRNVRHR 702
           NF  E  IG G F  V     L + +  + K                + E + L+ + H 
Sbjct: 3   NFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHP 62

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNEL-----------DITS 750
           N++K + S    +  N     +V E    G L   I + +++  L            + S
Sbjct: 63  NVIKYLDSFIEDNELN-----IVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCS 117

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           A++++H+     V+H D+KP N+ +      K+GD GL RF        S  ++ H  +G
Sbjct: 118 AVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF------SSKTTAAHSLVG 168

Query: 811 SIGYVPPE 818
           +  Y+ PE
Sbjct: 169 TPYYMSPE 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 15/125 (12%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS- 750
           E   +R+ +H N+V++ +S    D      L +V EFL  G+L D +   R NE  I + 
Sbjct: 66  EVVIMRDYQHPNIVEMYSSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIATV 120

Query: 751 ------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
                 AL +LH      V+H D+K  +ILL  +   K+ DFG    + + V  + S+  
Sbjct: 121 CLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVG 177

Query: 805 THVFM 809
           T  +M
Sbjct: 178 TPYWM 182

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 53.8 bits (129), Expect = 2e-07
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERT--GSW--------KSFIAECET----------LRNVRHRNLVKL 707
           +IG GSFG VL  +R   GS+        K+ + + E           L+N++H  LV L
Sbjct: 2   VIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGL 61

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
             S  +      E L  V ++++ G L  + H +R+             ++ SA+ YLH+
Sbjct: 62  HYSFQT-----AEKLYFVLDYVNGGEL--FFHLQRERCFLEPRARFYAAEVASAIGYLHS 114

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              + +++ DLKP NILLD +    + DFGL +  +E  +      +T  F G+  Y+ P
Sbjct: 115 ---LNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE------TTSTFCGTPEYLAP 165

Query: 818 E 818
           E
Sbjct: 166 E 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 45/190 (23%)

Query: 660 TGNFSHENLIGSGSFGSV-----LHNERTGSWKSF--------------IAECETLRNVR 700
            GNF  E  IG G F  V     L + R  + K                + E + L+ + 
Sbjct: 1   LGNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLD 60

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDI 748
           H N++K +   +S    N   L +V E    G L   I   +K +            + +
Sbjct: 61  HPNVIKYL---ASFIENNE--LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQL 115

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
            SAL+++H      ++H D+KP N+ +      K+GD GL RF        S  ++ H  
Sbjct: 116 CSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFF------SSKTTAAHSL 166

Query: 809 MGSIGYVPPE 818
           +G+  Y+ PE
Sbjct: 167 VGTPYYMSPE 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 39/151 (25%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G V                  L  E  G   + I E   L+ + H N+V+L+  
Sbjct: 7   IGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDV 66

Query: 711 CSSLDSKNMEFLALVYEFL-----------SNGSLGDWIHGERKNELDITSALDYLHNDC 759
             S ++K    L LV+EFL               L   +   +     +   + Y H+  
Sbjct: 67  VHS-ENK----LYLVFEFLDLDLKKYMDSSPLTGLDPPL--IKSYLYQLLQGIAYCHSH- 118

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              V+H DLKP N+L+D E   K+ DFGLAR
Sbjct: 119 --RVLHRDLKPQNLLIDREGALKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 41/184 (22%)

Query: 668 LIGSGSFGSVL--HNERTGSW-------------------KSFIA----ECETLRNVRHR 702
           LIGSGSFGSV    N  +G                     +S +     E   L+ ++H 
Sbjct: 7   LIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHE 66

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL------DITSALDY 754
           N+V+ + S     S + + L +  E++  GS+   +  +G  +  L       I   L+Y
Sbjct: 67  NIVQYLGS-----SLDADHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNY 121

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LHN     ++H D+K  NIL+D +   K+ DFG+++ L     +  +  +     GS+ +
Sbjct: 122 LHNR---GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFW 178

Query: 815 VPPE 818
           + PE
Sbjct: 179 MAPE 182

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)

Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 12  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 63

Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 64  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 115

Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 116 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 168

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 53.1 bits (128), Expect = 3e-07
 Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 45/161 (27%)

Query: 669 IGSGSFGSV---------------------LHNERTGSWKSFIAECETLRNVRHRNLVKL 707
           IG G++G V                        + TG  +S   E   LR ++H N+V L
Sbjct: 8   IGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSL 67

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-------------DITSALDY 754
           +     L+  +   + L++++ +   L   I   R+ +               I + + Y
Sbjct: 68  VEVF--LEHADKS-VYLLFDY-AEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHY 123

Query: 755 LHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARF 791
           LH++    V+H DLKP NIL+     E    K+GD GLAR 
Sbjct: 124 LHSNW---VLHRDLKPANILVMGEGPERGVVKIGDLGLARL 161

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+  H N+V +  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 69  EVVIMRDYHHENVVDMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIATV 123

Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL YLHN     V+H D+K  +ILL  +   K+ DFG    + + V  + S+  
Sbjct: 124 CLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVG 180

Query: 805 THVFMG 810
           T  +M 
Sbjct: 181 TPYWMA 186

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 32/148 (21%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G V                  L +E  G   + I E   L+ ++H N+V L   
Sbjct: 8   IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-LDITSALDYLHNDCEV-------P 762
               +S+    L L++EFLS   L  ++    K + +D      YL+   +         
Sbjct: 68  LMQ-ESR----LYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRR 121

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           V+H DLKP N+L+D +   K+ DFGLAR
Sbjct: 122 VLHRDLKPQNLLIDNKGVIKLADFGLAR 149

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 52/183 (28%), Positives = 76/183 (41%), Gaps = 45/183 (24%)

Query: 669 IGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRNLVKLIT 709
           IG GSFG V+   +  + + +                   +AE   L  V    +V L  
Sbjct: 1   IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS----------ALDYLHNDC 759
           S  S      E L LV  F++ G L  + H +R+   D++           AL+ LH   
Sbjct: 61  SFQS-----PEKLYLVLAFINGGEL--FHHLQREGRFDLSRARFYTAELLCALENLH--- 110

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           +  V++ DLKP NILLD +    + DFGL +       N      T+ F G+  Y+ PE 
Sbjct: 111 KFNVIYRDLKPENILLDYQGHIALCDFGLCKL------NMKDDDKTNTFCGTPEYLAPEL 164

Query: 820 GLG 822
            LG
Sbjct: 165 LLG 167

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 53.0 bits (127), Expect = 3e-07
 Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 27/147 (18%)

Query: 668 LIGSGSFGSVLH--NERTGS----------WKSFI------AECETLRNVRHRNLVKLI- 708
            +GSG++GSV    ++RTG           ++S I       E   L++++H N++ L+ 
Sbjct: 22  QVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLD 81

Query: 709 --TSCSSLDSKNMEFLALVYEFLS-NGSLGDWIHGERKNEL--DITSALDYLHNDCEVPV 763
             TS  S D     +L + Y        +G  +  ++   L   +   L Y+H      +
Sbjct: 82  VFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIH---SAGI 138

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +H DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 139 IHRDLKPGNLAVNEDCELKILDFGLAR 165

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 44/160 (27%), Positives = 66/160 (41%), Gaps = 54/160 (33%)

Query: 669 IGSGSFGSVL--HNERTG---SWKSFIA-------------ECETLRNVRHRNLVKLITS 710
           IG GS+G V    N  TG   + K F+              E   L+ ++H NLV LI  
Sbjct: 9   IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEV 68

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-----------------ITSALD 753
                 +    L LV+E+  +  L         NEL+                    A++
Sbjct: 69  -----FRRKRKLHLVFEYCDHTVL---------NELEKNPRGVPEHLIKKIIWQTLQAVN 114

Query: 754 YLH-NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           + H ++C    +H D+KP NIL+ ++   K+ DFG AR L
Sbjct: 115 FCHKHNC----IHRDVKPENILITKQGQIKLCDFGFARIL 150

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 53.1 bits (127), Expect = 3e-07
 Identities = 53/181 (29%), Positives = 81/181 (44%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVL----------HNERTGSWKSFIAECET----------LRNVRHRNLVKL 707
           +IG GSFG VL          +  +    K+ + + E           L+NV+H  LV L
Sbjct: 2   VIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 61

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----------ELDITSALDYLHN 757
             S  + D      L  V ++++ G L  + H +R+             +I SAL YLH+
Sbjct: 62  HFSFQTADK-----LYFVLDYINGGEL--FYHLQRERCFLEPRARFYAAEIASALGYLHS 114

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              + +V+ DLKP NILLD +    + DFGL +      +N     +T  F G+  Y+ P
Sbjct: 115 ---LNIVYRDLKPENILLDSQGHIVLTDFGLCK------ENIEHNGTTSTFCGTPEYLAP 165

Query: 818 E 818
           E
Sbjct: 166 E 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 19/112 (16%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-- 746
           F+ E E L+   H N+VKLI  C        + + +V E +  GSL  ++  + KN L  
Sbjct: 39  FLQEAEILKQYDHPNIVKLIGVCV-----QKQPIYIVMELVPGGSLLTFLRKK-KNRLTV 92

Query: 747 --------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                   D  + ++YL +      +H DL   N L+ E    K+ DFG++R
Sbjct: 93  KKLLQMSLDAAAGMEYLESKN---CIHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 18/113 (15%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE--------FLSN----GSLGDW 737
           +A  + L    H N+V+L+  C++  +     + LV+E        +L      G   + 
Sbjct: 50  VALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQDLRTYLDKVPPPGLPAET 109

Query: 738 IHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           I    +  L     LD+LH +C   +VH DLKP NIL+      K+ DFGLAR
Sbjct: 110 IKDLMRQFL---RGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLAR 156

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 43/171 (25%)

Query: 666 ENLIGSGSFGSVLH--------NERTGSWKS------------FIAECETLRNVRHRNLV 705
           E +IG+G FG V           E   + K+            F++E   +    H N++
Sbjct: 9   EEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNII 68

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALD 753
            L      + +K+   + ++ EF+ NG+L  ++   R+N+              I + + 
Sbjct: 69  HL----EGVVTKSRPVM-IITEFMENGALDSFL---RQNDGQFTVIQLVGMLRGIAAGMK 120

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
           YL    E+  VH DL   NIL++  +  KV DFGL+RFL +   + +  SS
Sbjct: 121 YL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSS 168

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 54/191 (28%), Positives = 83/191 (43%), Gaps = 42/191 (21%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFI--------------AECETL-RNV-----RHRNLVKL 707
           ++G GSFG V   E  G+ + F                EC  + + V      H  L  L
Sbjct: 2   MLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHL 61

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYLHNDC 759
              C+    +N+ F   V E+L+ G L   I    K +L        +I   L +LH+  
Sbjct: 62  Y--CTFQTKENLFF---VMEYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSK- 115

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              +V+ DLK  NILLD +   K+ DFG+ +      +N    + T  F G+  Y+ PE 
Sbjct: 116 --GIVYRDLKLDNILLDTDGHIKIADFGMCK------ENMLGDAKTCTFCGTPDYIAPEI 167

Query: 820 GLGERPSTAGD 830
            LG++ +T+ D
Sbjct: 168 LLGQKYNTSVD 178

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.7 bits (126), Expect = 5e-07
 Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 15/151 (9%)

Query: 87  ISPHIGNL-SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
           I P IG L S L+ + L +NK+  +LP  + NL  L+ L++SFN+L  +LP  +S L+ L
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
             LDL  NKI       ++  L +L+ L+   N +           + S LS L+NL  L
Sbjct: 189 NNLDLSGNKI--SDLPPEIELLSALEELDLSNNSI---------IELLSSLSNLKNLSGL 237

Query: 206 DLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
           +L+ N+L   +P +I N+++L  L L++NQ+
Sbjct: 238 ELSNNKLE-DLPESIGNLSNLETLDLSNNQI 267

Length = 394

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 52.4 bits (126), Expect = 5e-07
 Identities = 50/181 (27%), Positives = 76/181 (41%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFIA---------------EC-ETLRNV-----RHRNLVK 706
           ++G GSFG VL  E  G+     A               EC  T + V     +H  L +
Sbjct: 2   VLGKGSFGKVLLAELKGT-DELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQ 60

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYLHND 758
           L  SC     +  + L  V E+++ G L   I    + +         +I   L +LH  
Sbjct: 61  LH-SCF----QTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLH-- 113

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR-FLLERVDNQSSISSTHVFMGSIGYVPP 817
            E  +++ DLK  N+LLD E   K+ DFG+ +  +L  V       +T  F G+  Y+ P
Sbjct: 114 -ERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV-------TTSTFCGTPDYIAP 165

Query: 818 E 818
           E
Sbjct: 166 E 166

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 52/179 (29%), Positives = 73/179 (40%), Gaps = 43/179 (24%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           +G GS+G V                  L N      K+   E + L  ++H N+V    S
Sbjct: 8   VGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRES 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----------DITSALDYLHNDC 759
               D      L +V  F   G L   +  E+K +L            I  AL YLH   
Sbjct: 68  WEGEDG----LLYIVMGFCEGGDLYHKLK-EQKGKLLPENQVVEWFVQIAMALQYLH--- 119

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           E  ++H DLK  N+ L      KVGD G+AR L    +NQ  ++ST   +G+  Y+ PE
Sbjct: 120 EKHILHRDLKTQNVFLTRTNIIKVGDLGIARVL----ENQCDMAST--LIGTPYYMSPE 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 52.1 bits (125), Expect = 6e-07
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 32/186 (17%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFIAEC----------ETLRNVRHRNLVKLITSCSSLDS- 716
           ++G GSFG V+  E  G+ + F  +           +    +  R ++ L      L   
Sbjct: 2   VLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHL 61

Query: 717 ----KNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYLHNDCEVPVV 764
               +  E L  V E+L+ G L   I    + +         +I   L +LH      ++
Sbjct: 62  FCTFQTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKK---GII 118

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           + DLK  N+LLD++   K+ DFG+ +   E ++ +   S+   F G+  Y+ PE   G++
Sbjct: 119 YRDLKLDNVLLDKDGHIKIADFGMCK---ENMNGEGKAST---FCGTPDYIAPEILKGQK 172

Query: 825 PSTAGD 830
            + + D
Sbjct: 173 YNESVD 178

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 51.5 bits (124), Expect = 6e-07
 Identities = 49/192 (25%), Positives = 77/192 (40%), Gaps = 38/192 (19%)

Query: 656 LRRATGNFSHENLIGSGSFGSVLH--NERTGSW-------------KSFIAECETLRNV- 699
           L   TG F    +IG G++G V    +++TG               +    E   LR   
Sbjct: 1   LPDPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYS 60

Query: 700 RHRNLVKLITSCSSLDSKNMEF-LALVYEFLSNGSLGDWIHGER------KNEL------ 746
            H N+     +    +    +  L LV E    GS+ D + G R      K E       
Sbjct: 61  NHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILR 120

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           +    L YLH +    V+H D+K  NILL +    K+ DFG++  L       S++   +
Sbjct: 121 ETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGVSAQL------DSTLGRRN 171

Query: 807 VFMGSIGYVPPE 818
            F+G+  ++ PE
Sbjct: 172 TFIGTPYWMAPE 183

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 51.6 bits (123), Expect = 6e-07
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 26/141 (18%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNEL-- 746
           I E + L+ + H N++K   S    +  N     +V E    G L   I H +++  L  
Sbjct: 50  IKEIDLLKQLNHPNVIKYYASFIEDNELN-----IVLELADAGDLSRMIKHFKKQKRLIP 104

Query: 747 ---------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                     + SAL+++H+     V+H D+KP N+ +      K+GD GL RF      
Sbjct: 105 EKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF----- 156

Query: 798 NQSSISSTHVFMGSIGYVPPE 818
             S  ++ H  +G+  Y+ PE
Sbjct: 157 -SSKTTAAHSLVGTPYYMSPE 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 35/167 (20%)

Query: 669 IGSGSFGSVLHNERTGSWK---------SFIA---------ECETLRNVRHRNLVKLITS 710
           IGSG++G V     T S K         +F           E + LR+ +H N++ +   
Sbjct: 13  IGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDI 72

Query: 711 CSSLDSKNMEF--LALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
              L     +F  + +V + L    L   IH ++    +        +   L Y+H+   
Sbjct: 73  ---LRPPGADFKDVYVVMD-LMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSAN- 127

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             V+H DLKP N+L++E+   ++GDFG+AR L           + +V
Sbjct: 128 --VIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYV 172

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 10/84 (11%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            I   L++LH      +V+ DLKP N+LLD+    ++ D GLA  L              
Sbjct: 103 QIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-------KKIK 152

Query: 807 VFMGSIGYVPPEYGLGERPSTAGD 830
              G+ GY+ PE   GE    + D
Sbjct: 153 GRAGTPGYMAPEVLQGEVYDFSVD 176

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 51.3 bits (123), Expect = 8e-07
 Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 42/162 (25%)

Query: 669 IGSGSFGSVLH-------------------NERTG--SWKSFIAECETLRNVRHRNLVKL 707
           +GSG+FG+V                      E T   + K  + E   + +V H ++V+L
Sbjct: 15  LGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL 74

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHN 757
           +  C S        + L+ + +  G L D++    K+ +           I   + YL  
Sbjct: 75  LGICLS------SQVQLITQLMPLGCLLDYVR-NHKDNIGSQYLLNWCVQIAKGMSYLE- 126

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
             E  +VH DL   N+L+      K+ DFGLA+ LL+  + +
Sbjct: 127 --EKRLVHRDLAARNVLVKTPQHVKITDFGLAK-LLDVDEKE 165

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 19/150 (12%)

Query: 692 ECET--LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG--------E 741
           ECE   L+N++H  +V+       L  +  + L +  E++  GS+ D +           
Sbjct: 52  ECEIQLLKNLQHERIVQYY---GCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGALTESVT 108

Query: 742 RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS 801
           RK    I   + YLH++    +VH D+K  NIL D     K+GDFG ++ L     + + 
Sbjct: 109 RKYTRQILEGMSYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTG 165

Query: 802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           I S     G+  ++ PE   GE      DV
Sbjct: 166 IRSV---TGTPYWMSPEVISGEGYGRKADV 192

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 38/177 (21%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFIAEC-----------ETLRNVRHRNLVKLITS------ 710
           +IG G FG V    +  + K +  +C           ETL  +  R ++ L+++      
Sbjct: 1   IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA-LNERIMLSLVSTGDCPFI 59

Query: 711 -CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLHNDCEV 761
            C +      + L  + + ++ G L   +  HG       R    +I   L+++HN    
Sbjct: 60  VCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRF-- 117

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ PE
Sbjct: 118 -VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMAPE 165

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 44/157 (28%)

Query: 667 NLIGSGSFGSV------------------------LHNERTGSWKSFIAECETLRNVRHR 702
           + +GSG++G V                        +H +RT        E   L+++ H 
Sbjct: 21  SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRT------YRELRLLKHMDHE 74

Query: 703 NLVKLITSCSSLDSKNMEF--LALVYEFLSNGSLGDWIHGERKNE-------LDITSALD 753
           N++ L+    +  S   +F  + LV   +    L + +  ++ ++         I   L 
Sbjct: 75  NVIGLL-DVFTPASSLEDFQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLK 132

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           Y+H+     ++H DLKP NI ++E+   K+ DFGLAR
Sbjct: 133 YIHS---AGIIHRDLKPSNIAVNEDCELKILDFGLAR 166

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 50.8 bits (121), Expect = 2e-06
 Identities = 49/180 (27%), Positives = 77/180 (42%), Gaps = 45/180 (25%)

Query: 665 HENLIGSGSFGSVLH--NERTGS-----------------WKSFIAECETLRNVRHRNLV 705
           HE  IG GSFG+V    N  T                   W+  I E + L+ ++H N +
Sbjct: 27  HE--IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTI 84

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHND 758
           +    C   +  +  +L + Y   S   L + +H +   E++I +        L YLH+ 
Sbjct: 85  EY-KGCYLKE--HTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAITHGALQGLAYLHSH 140

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
               ++H D+K GNILL E    K+ DFG A          S  S  + F+G+  ++ PE
Sbjct: 141 N---MIHRDIKAGNILLTEPGQVKLADFGSA----------SKSSPANSFVGTPYWMAPE 187

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 50.5 bits (121), Expect = 2e-06
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 52/176 (29%)

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKN 744
           K F  E E L N +H N+VK    C+  D   M     V+E++ +G L  ++  HG    
Sbjct: 53  KDFEREAELLTNFQHENIVKFYGVCTEGDPPIM-----VFEYMEHGDLNKFLRSHGPDAA 107

Query: 745 ELD--------------------ITSALDYL---HNDCEVPVVHSDLKPGNILLDEEMTA 781
            L                     I S + YL   H       VH DL   N L+  ++  
Sbjct: 108 FLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQH------FVHRDLATRNCLVGYDLVV 161

Query: 782 KVGDFGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDV 831
           K+GDFG++R           + +T  +      M  I ++PPE  +  + +T  DV
Sbjct: 162 KIGDFGMSR----------DVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDV 207

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 40/153 (26%)

Query: 669 IGSGSFGSVLHNE-RTGSWKS------------------FIAECETLRNVRHRNLVKLIT 709
           IG+G FG VL  E   G  K+                  F+ E +  R + H N+++ + 
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------------LDITSALDYLH 756
            C            LV EF   G L +++   R                 ++ S L +LH
Sbjct: 63  QCIESIP-----YLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLH 117

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
              +   +HSDL   N  L  +++ K+GD+GLA
Sbjct: 118 ---QADFIHSDLALRNCQLTADLSVKIGDYGLA 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 43/176 (24%)

Query: 669 IGSGSFGSVL------HNERTG-------------SWKSFIAECETLRNVRHRNLVKLIT 709
           IG GSFG+V       ++E                 W+  I E   L+ +RH N ++   
Sbjct: 23  IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQY-R 81

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVP 762
            C     ++  +L + Y   S   L + +H +   E++I +        L YLH+     
Sbjct: 82  GCYL--REHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAVTHGALQGLAYLHSH---N 135

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           ++H D+K GNILL E    K+GDFG A          S ++  + F+G+  ++ PE
Sbjct: 136 MIHRDVKAGNILLSEPGLVKLGDFGSA----------SIMAPANXFVGTPYWMAPE 181

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 50.0 bits (119), Expect = 2e-06
 Identities = 45/187 (24%), Positives = 75/187 (40%), Gaps = 54/187 (28%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL 746
           F  E E L  ++H+++V+    C+         L +V+E++ +G L  ++  HG     L
Sbjct: 54  FQREAELLTVLQHQHIVRFYGVCT-----EGRPLLMVFEYMRHGDLNRFLRSHGPDAKIL 108

Query: 747 D---------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD 785
                                 I S + YL     +  VH DL   N L+ + +  K+GD
Sbjct: 109 AGGEDVAPGQLTLGQMLAIASQIASGMVYL---ASLHFVHRDLATRNCLVGQGLVVKIGD 165

Query: 786 FGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDVPTSESFAG 839
           FG++R           I ST  +      M  I ++PPE  L  + +T  D+ +      
Sbjct: 166 FGMSR----------DIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWS------ 209

Query: 840 EFNIVKW 846
            F +V W
Sbjct: 210 -FGVVLW 215

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 29/89 (32%), Positives = 52/89 (58%), Gaps = 6/89 (6%)

Query: 519 GPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP-SEGIFRN 577
           G IPN +++L+ L+ ++LS N + G+IP  L ++ +L  L+L++N+  G +P S G   +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 578 MSNVHLKGNPKLCLQLGCENPRSHGSRLI 606
           +  ++L GN      L    P + G RL+
Sbjct: 492 LRILNLNGN-----SLSGRVPAALGGRLL 515

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 3e-06
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 32/112 (28%)

Query: 263 GKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFIT 322
           G IP  +  L ++Q I ++ N + G +PP LG+                         IT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-------------------------IT 466

Query: 323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG 374
           SL        L L  N F G IPES+G  ++ L  L L GN + G++PA++G
Sbjct: 467 SLE------VLDLSYNSFNGSIPESLGQLTS-LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 56/252 (22%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG-----------------SWKSFIAECET--LRNVR 700
           N+    L+G G+FG V   ++  TG                 S +    ECE   L+N+R
Sbjct: 3   NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLR 62

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSAL 752
           H  +V+        + K    L++  E++  GS+ D +           R+    I   +
Sbjct: 63  HDRIVQYYGCLRDPEEKK---LSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGV 119

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YLH++    +VH D+K  NIL D     K+GDFG ++ +     + + I S     G+ 
Sbjct: 120 SYLHSNM---IVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSV---TGTP 173

Query: 813 GYVPPEYGLGERPSTAGDV---------------PTS--ESFAGEFNI-VKWVESNLPEN 854
            ++ PE   GE      DV               P +  E+ A  F I  +  +  LP+ 
Sbjct: 174 YWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEAMAAIFKIATQPTKPMLPDG 233

Query: 855 VLQVLDPELRQL 866
           V       L+Q+
Sbjct: 234 VSDACRDFLKQI 245

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 35/167 (20%), Positives = 61/167 (36%), Gaps = 48/167 (28%)

Query: 669 IGSGSFGSV----LHNERTGSWKSFIA-----ECETLRNVRH-------------RNLVK 706
           +G GSFG V          G  ++ +A     E  ++R                  ++V+
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------------LDI 748
           L+   S+     +    +V E ++ G L  ++   R                      +I
Sbjct: 74  LLGVVST-GQPTL----VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEI 128

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
              + YL        VH DL   N ++ E++T K+GDFG+ R + E 
Sbjct: 129 ADGMAYLA---AKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYET 172

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 48/175 (27%)

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG---- 740
           K F  E E L N++H ++VK    C   D      L +V+E++ +G L  ++  HG    
Sbjct: 52  KDFQREAELLTNLQHEHIVKFYGVCGDGDP-----LIMVFEYMKHGDLNKFLRAHGPDAM 106

Query: 741 --------ERKNEL----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK 782
                   + K EL           I S + YL +      VH DL   N L+   +  K
Sbjct: 107 ILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVK 163

Query: 783 VGDFGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDV 831
           +GDFG++R           + ST  +      M  I ++PPE  +  + +T  DV
Sbjct: 164 IGDFGMSR----------DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDV 208

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 48/177 (27%), Positives = 76/177 (42%), Gaps = 38/177 (21%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFIAEC-----------ETLRNVRHRNLVKLITS------ 710
           +IG G FG V    +  + K +  +C           ETL  +  R ++ L+++      
Sbjct: 1   IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLA-LNERIMLSLVSTGDCPFI 59

Query: 711 -CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLHNDCEV 761
            C S      + L+ + + ++ G L   +  HG       R    +I   L+++HN    
Sbjct: 60  VCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRF-- 117

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ PE
Sbjct: 118 -VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMAPE 165

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 20/111 (18%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD- 747
             AE + L +     +VKL    S  D    E L LV E++  G L + +   RK+    
Sbjct: 48  VRAERDILADADSPWIVKLY--YSFQDE---EHLYLVMEYMPGGDLMNLL--IRKDVFPE 100

Query: 748 ---------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
                    +  ALD +H    +  +H D+KP NIL+D +   K+ DFGL 
Sbjct: 101 ETARFYIAELVLALDSVHK---LGFIHRDIKPDNILIDADGHIKLADFGLC 148

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 49.3 bits (118), Expect = 3e-06
 Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 28/158 (17%)

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----- 741
           K  + E E  ++ +   +VK   +     S +   + +  E+   GSL D I+ +     
Sbjct: 44  KQILRELEINKSCKSPYIVKYYGAFLDESSSS---IGIAMEYCEGGSL-DSIYKKVKKRG 99

Query: 742 -RKNEL-------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
            R  E         +   L YLH      ++H D+KP NILL  +   K+ DFG++  L+
Sbjct: 100 GRIGEKVLGKIAESVLKGLSYLH---SRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELV 156

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                  S++ T  F G+  Y+ PE   G+  S   DV
Sbjct: 157 N------SLAGT--FTGTSFYMAPERIQGKPYSITSDV 186

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 49.7 bits (118), Expect = 4e-06
 Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 43/182 (23%)

Query: 663 FSHENLIGSGSFGSVL--HNERTGS-----------------WKSFIAECETLRNVRHRN 703
           F+    IG GSFG+V    + RT                   W+  I E + L+ ++H N
Sbjct: 27  FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN 86

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLH 756
            ++    C     ++  +L + Y   S   L + +H +   E++I +        L YLH
Sbjct: 87  SIEY-KGCYL--REHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAITHGALQGLAYLH 142

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +     ++H D+K GNILL E    K+ DFG A          S  S  + F+G+  ++ 
Sbjct: 143 SH---NMIHRDIKAGNILLTEPGQVKLADFGSA----------SIASPANSFVGTPYWMA 189

Query: 817 PE 818
           PE
Sbjct: 190 PE 191

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 49.8 bits (119), Expect = 4e-06
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 34/181 (18%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFI--------------AECETLRNVRHRNLVKL 707
           +F+   ++G GSFG V+  ER G+ + +                EC T+   R   L   
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVEC-TMVEKRVLALPGK 59

Query: 708 ITSCSSLDS--KNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLHN 757
               + L S  + M+ L  V E+++ G L   I    K +         +I   L +LH+
Sbjct: 60  PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHS 119

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +++ DLK  N++LD E   K+ DFG+ +      +N     +T  F G+  Y+ P
Sbjct: 120 K---GIIYRDLKLDNVMLDAEGHIKIADFGMCK------ENIFGGKTTRTFCGTPDYIAP 170

Query: 818 E 818
           E
Sbjct: 171 E 171

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 15/74 (20%)

Query: 748 ITSALDYL---HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
           I  AL YL   H      V+H D+KP NILLD     K+ DFG++  L   VD+++   S
Sbjct: 123 IVKALHYLKEKHG-----VIHRDVKPSNILLDASGNVKLCDFGISGRL---VDSKAKTRS 174

Query: 805 THVFMGSIGYVPPE 818
                G   Y+ PE
Sbjct: 175 A----GCAAYMAPE 184

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 49.3 bits (117), Expect = 4e-06
 Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 45/172 (26%)

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-------- 738
           K F  E E L N++H ++VK    C   D      L +V+E++ +G L  ++        
Sbjct: 52  KDFHREAELLTNLQHEHIVKFYGVCVEGDP-----LIMVFEYMKHGDLNKFLRAHGPDAV 106

Query: 739 ---HGERKNEL----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD 785
               G R  EL           I + + YL +      VH DL   N L+ E +  K+GD
Sbjct: 107 LMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGD 163

Query: 786 FGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDV 831
           FG++R           + ST  +      M  I ++PPE  +  + +T  DV
Sbjct: 164 FGMSR----------DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDV 205

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 5e-06
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 4/146 (2%)

Query: 443 ISFGNFQSLLSIDLSNNRINGNIPKGILRPL--PEEISRLENVVTIDLSDNSLSGNLPNS 500
               N   LL   LS       +    +  L   E +  L  + ++DL+ N L  N+ + 
Sbjct: 53  NLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SE 111

Query: 501 LKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNL 560
           L    +L  L +  N  +   P I      L+ LDLS NK+  S+PS L+NL  L++L+L
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDL 170

Query: 561 TFNNLEGVVPSEGIFRNMSNVHLKGN 586
           +FN+L  +        N++N+ L GN
Sbjct: 171 SFNDLSDLPKLLSNLSNLNNLDLSGN 196

Length = 394

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 39/159 (24%)

Query: 668 LIGSGSFGSV----LHNERTGSWK-----------------SFIAECETLRNVRHRNLVK 706
           ++G G FGSV    L  +     K                  F++E   +++  H N++K
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 707 LITSCSSLDSKNMEFLALV-YEFLSNGSLGDWIHGERKNE--------------LDITSA 751
           LI  C    S       +V   F+ +G L  ++   R                 +DI   
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG 125

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           ++YL N      +H DL   N +L E+MT  V DFGL++
Sbjct: 126 MEYLSNR---NFIHRDLAARNCMLREDMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 33/150 (22%)

Query: 669 IGSGSFGSV--LHNERTGSWKSFI--------------AECETLRNVR-HRNLVKLITSC 711
           IG G++G V  + N++ GS K+ +              AE   L+ +  H N+VK     
Sbjct: 26  IGKGTYGKVFKVLNKKNGS-KAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMY 84

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNELDIT-------SALDYLHNDC 759
              D KN + L LV E  + GS+ D +      GER  E  I          L +LH + 
Sbjct: 85  YKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN- 143

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
               +H D+K  NILL  E   K+ DFG++
Sbjct: 144 --KTIHRDVKGNNILLTTEGGVKLVDFGVS 171

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 60/237 (25%), Positives = 97/237 (40%), Gaps = 49/237 (20%)

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRS-------LTLLDLSYNSISGEIP---IEIGQLQGL 403
            L +L L  N   G+IP  +  L         L  LDLS N++  +       + +   L
Sbjct: 52  SLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 404 QVLGLAGNEI-PGGIPNSLANLK----KLNQIDLSGNELTGE--IPIS--FGNFQSLLSI 454
           Q L L  N +   G+      LK     L ++ L  N L G     ++      + L  +
Sbjct: 111 QELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKEL 170

Query: 455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY 514
           +L+NN I      GI R L E +    N+  +DL++N L+       +   +L E L   
Sbjct: 171 NLANNGIGD---AGI-RALAEGLKANCNLEVLDLNNNGLTD------EGASALAETL--- 217

Query: 515 NQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQN-----LQALRSLNLTFNNLE 566
                      A LK LEVL+L  N L+ +  + L +       +L +L+L+ N++ 
Sbjct: 218 -----------ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 49.2 bits (117), Expect = 6e-06
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 42/185 (22%)

Query: 669 IGSGSFGSV--LHNERTG--------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK- 717
           IG G+FG V  +  + T         S K  +A+ E    +  RN    I   + LD   
Sbjct: 1   IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERN----ILVRTLLDESP 56

Query: 718 ---NMEF-------LALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDC 759
               ++F       L LV +++S G L   +  E +   D        +  AL++LH   
Sbjct: 57  FIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLH--- 113

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           +  +V+ DLKP NILLD      + DFGL++       N +   +T+ F G+  Y+ PE 
Sbjct: 114 KYDIVYRDLKPENILLDATGHIALCDFGLSK------ANLTDNKTTNTFCGTTEYLAPEV 167

Query: 820 GLGER 824
            L E+
Sbjct: 168 LLDEK 172

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 24/113 (21%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL---------SNGSLGD-----W 737
           E + LR++ H N++ +         +    + +VYE +         S+ +L D     +
Sbjct: 54  EIKLLRHLDHENVIAIKDIMPPPHREAFNDVYIVYELMDTDLHQIIRSSQTLSDDHCQYF 113

Query: 738 IHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           ++        +   L Y+H+     V+H DLKP N+LL+     K+ DFGLAR
Sbjct: 114 LY-------QLLRGLKYIHS---ANVLHRDLKPSNLLLNANCDLKICDFGLAR 156

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 48.8 bits (116), Expect = 7e-06
 Identities = 39/170 (22%), Positives = 68/170 (40%), Gaps = 46/170 (27%)

Query: 662 NFSHENLIGSGSFGSVLH-------NERTGSWK------------SFIAECETLRNV-RH 701
           +   E++IG G+FG V+         +   + K             F  E E L  +  H
Sbjct: 3   DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH 62

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY------- 754
            N++ L+ +C     +N  +L +  E+   G+L D++   R  E D   A ++       
Sbjct: 63  PNIINLLGAC-----ENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLT 117

Query: 755 --------------LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                         +    E   +H DL   N+L+ E + +K+ DFGL+R
Sbjct: 118 SQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSR 167

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 48.9 bits (116), Expect = 7e-06
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 25/124 (20%)

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDC 759
           SC   +S+    L  V E+++ G L    H +R+ +L          +I+ AL+YLH   
Sbjct: 63  SCFQTESR----LFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH--- 113

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           E  +++ DLK  N+LLD E   K+ D+G+ +  L   D      +T  F G+  Y+ PE 
Sbjct: 114 ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD------TTSTFCGTPNYIAPEI 167

Query: 820 GLGE 823
             GE
Sbjct: 168 LRGE 171

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 15/126 (11%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 67  EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 121

Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  + S+  
Sbjct: 122 CLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVG 178

Query: 805 THVFMG 810
           T  +M 
Sbjct: 179 TPYWMA 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 48.5 bits (115), Expect = 7e-06
 Identities = 43/169 (25%), Positives = 69/169 (40%), Gaps = 52/169 (30%)

Query: 666 ENLIGSGSFGSVLHN-------------ERTGSWKS------FIAECETL-RNVRHRNLV 705
           +++IG G+FG VL               +R   + S      F  E E L +   H N++
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 71

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------------------ 747
            L+ +C     ++  +L L  E+  +G+L D++   R  E D                  
Sbjct: 72  NLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 126

Query: 748 ------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 +   +DYL    +   +H DL   NIL+ E   AK+ DFGL+R
Sbjct: 127 LHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 172

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 48.7 bits (116), Expect = 8e-06
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 17/110 (15%)

Query: 717 KNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLHNDCEVPVVHSDL 768
           +  + L  V EF++ G L   I   R+ +         +ITSAL +LH   +  +++ DL
Sbjct: 66  QTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLH---DKGIIYRDL 122

Query: 769 KPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           K  N+LLD E   K+ DFG+ +   E + N  + S+   F G+  Y+ PE
Sbjct: 123 KLDNVLLDHEGHCKLADFGMCK---EGIFNGKTTST---FCGTPDYIAPE 166

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 48.9 bits (116), Expect = 8e-06
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 29/176 (16%)

Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           VW +  R +    VG  A   VC    +YD   R     + + L  S  F S++H  RT 
Sbjct: 10  VWEVPERYQNLTPVGSGAYGSVCS---AYDTRLRQ--KVAVKKL--SRPFQSLIHARRT- 61

Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T  +S+++ N  +L      L    L + +  +
Sbjct: 62  -----YRELRLLKHMKHENVIGLLDVFTPATSIENFNEVYLVTN---LMGADLNNIVKCQ 113

Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + ++         +   L Y+H+     ++H DLKP N+ ++E+   ++ DFGLAR
Sbjct: 114 KLSDEHVQFLIYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDCELRILDFGLAR 166

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 9/73 (12%)

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
           + I  AL+YLH+  ++ V+H D+KP N+L++     K+ DFG++ +L   VD   S++ T
Sbjct: 110 VSIVKALEYLHS--KLSVIHRDVKPSNVLINRNGQVKLCDFGISGYL---VD---SVAKT 161

Query: 806 HVFMGSIGYVPPE 818
            +  G   Y+ PE
Sbjct: 162 -IDAGCKPYMAPE 173

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 48.3 bits (115), Expect = 9e-06
 Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 9/76 (11%)

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I S L++LH      +++ DLKP N+LLD +   ++ D GLA   +E  D Q   S T  
Sbjct: 106 IISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLA---VELKDGQ---SKTKG 156

Query: 808 FMGSIGYVPPEYGLGE 823
           + G+ G++ PE   GE
Sbjct: 157 YAGTPGFMAPELLQGE 172

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 48.1 bits (114), Expect = 9e-06
 Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 46/191 (24%)

Query: 669 IGSGSFGSVL--HNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ TG                + ++ E + L +  H N+VKL     
Sbjct: 13  LGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKL----- 67

Query: 713 SLDSKNMEF-LALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEV 761
            LD+   E  L ++ EF + G++ D +  E +  L              AL+YLH   E 
Sbjct: 68  -LDAFYYENNLWILIEFCAGGAV-DAVMLELERPLTEPQIRVVCKQTLEALNYLH---EN 122

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
            ++H DLK GNIL   +   K+ DFG++        N  +I     F+G+  ++ PE  +
Sbjct: 123 KIIHRDLKAGNILFTLDGDIKLADFGVS------AKNTRTIQRRDSFIGTPYWMAPEVVM 176

Query: 822 GERPSTAGDVP 832
            E   T+ D P
Sbjct: 177 CE---TSKDRP 184

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 16/109 (14%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GE------RK 743
           E + L++++H N+V+ + +C  LD      +++  EF+  GS+   ++  G        K
Sbjct: 52  EVDLLKSLKHVNIVQYLGTC--LDDNT---ISIFMEFVPGGSISSILNRFGPLPEPVFCK 106

Query: 744 NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               I   + YLHN+C   VVH D+K  N++L      K+ DFG AR L
Sbjct: 107 YTKQILDGVAYLHNNC---VVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 53/164 (32%)

Query: 666 ENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNVRHRN 703
           E +IG+G FG V                       + E+    + F++E   +    H N
Sbjct: 9   EKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEK--QRRDFLSEASIMGQFDHPN 66

Query: 704 LVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT----------- 749
           ++ L   +T    +         +V E++ NGSL  ++   RK++   T           
Sbjct: 67  IIHLEGVVTKSKPV--------MIVTEYMENGSLDAFL---RKHDGQFTVIQLVGMLRGI 115

Query: 750 -SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            S + YL    ++  VH DL   NIL++  +  KV DFGL+R L
Sbjct: 116 ASGMKYL---SDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVL 156

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 47.8 bits (113), Expect = 1e-05
 Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 36/190 (18%)

Query: 656 LRRATGNFSHENLIGSGSFGSVLHNE--RTGSWKSFIA------ECETLRN--------V 699
           LR   G F    L+G+G++G V      +TG   +         E E ++          
Sbjct: 1   LRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYS 60

Query: 700 RHRNLVKLITSCSSLDSKNME-FLALVYEFLSNGSLGDWIHGERKNEL----------DI 748
            HRN+     +    +   M+  L LV EF   GS+ D I   + N L          +I
Sbjct: 61  HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREI 120

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
              L +LH      V+H D+K  N+LL E    K+ DFG++  L        ++   + F
Sbjct: 121 LRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL------DRTVGRRNTF 171

Query: 809 MGSIGYVPPE 818
           +G+  ++ PE
Sbjct: 172 IGTPYWMAPE 181

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 39/155 (25%)

Query: 668 LIGSGSFGSV-------------------LHNERTGSWKS--FIAECETLRNVRHRNLVK 706
           ++GSG+FG+V                   + NE TG   +  F+ E   + ++ H +LV+
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C S        + LV + + +G L D++H  + N          + I   + YL  
Sbjct: 74  LLGVCLS------PTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLE- 126

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             E  +VH DL   N+L+      K+ DFGLAR L
Sbjct: 127 --ERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 159

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 19/124 (15%)

Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN 744
           S K  + E + +R + H N+VK+        S   E +  + E  S   + +++  +  N
Sbjct: 45  SVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMETDLAN 104

Query: 745 ELD---------------ITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGL 788
            L+               +   L Y+H+     V+H DLKP N+ ++ E++  K+GDFGL
Sbjct: 105 VLEQGPLSEEHARLFMYQLLRGLKYIHS---ANVLHRDLKPANVFINTEDLVLKIGDFGL 161

Query: 789 ARFL 792
           AR +
Sbjct: 162 ARIV 165

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 15/126 (11%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS- 750
           E   +R+ +H+N+V++  S         E L ++ EFL  G+L D +   R NE  I + 
Sbjct: 68  EVVIMRDYQHQNVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQTRLNEEQIATV 122

Query: 751 ------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
                 AL YLH+     V+H D+K  +ILL  +   K+ DFG    + + V  + S+  
Sbjct: 123 CESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVG 179

Query: 805 THVFMG 810
           T  +M 
Sbjct: 180 TPYWMA 185

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 49.0 bits (116), Expect = 1e-05
 Identities = 59/209 (28%), Positives = 84/209 (40%), Gaps = 61/209 (29%)

Query: 669 IGSGSFGSV--LHNERTGS---WKS-------------FIAECETLRNVRHRNLVKLITS 710
           IG+G FG V  + ++RT     WK+              + E   +R ++H+N+V+ I  
Sbjct: 21  IGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYI-- 78

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITS----ALDYLHND 758
                +K  + L ++ EF   G L   I          E    +DIT     AL Y HN 
Sbjct: 79  -DRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNL 137

Query: 759 CEVP----VVHSDLKPGNILLDEEM-----------------TAKVGDFGLARFLLERVD 797
            + P    V+H DLKP NI L   +                  AK+GDFGL++       
Sbjct: 138 KDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSK------- 190

Query: 798 NQSSISSTHVFMGSIGYVPPEYGLGERPS 826
           N    S  H  +G+  Y  PE  L E  S
Sbjct: 191 NIGIESMAHSCVGTPYYWSPELLLHETKS 219

Length = 1021

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 10/73 (13%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR-FLLERVDNQSSISST 805
           +I  ALD+LH   ++ +++ D+K  NILLD E    + DFGL++ FL E  +        
Sbjct: 113 EIVLALDHLH---QLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEER------A 163

Query: 806 HVFMGSIGYVPPE 818
           + F G+I Y+ PE
Sbjct: 164 YSFCGTIEYMAPE 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 3/43 (6%)

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           I   L Y+H+     VVH DLKP NIL++E    K+ DFGLAR
Sbjct: 117 ILRGLKYVHS---AGVVHRDLKPSNILINENCDLKICDFGLAR 156

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 39/124 (31%), Positives = 61/124 (49%), Gaps = 25/124 (20%)

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDC 759
           SC   +S+    L  V EF+S G L    H +R+ +L          +I+ AL++LH   
Sbjct: 63  SCFQTESR----LFFVIEFVSGGDL--MFHMQRQRKLPEEHARFYSAEISLALNFLH--- 113

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           E  +++ DLK  N+LLD E   K+ D+G+ +  +   D      +T  F G+  Y+ PE 
Sbjct: 114 ERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD------TTSTFCGTPNYIAPEI 167

Query: 820 GLGE 823
             GE
Sbjct: 168 LRGE 171

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 11/102 (10%)

Query: 696 LRNVRHRNLVKLITSCSSLDS-KNMEFLALVYEFLSNGSLGDWIHGERKNE------LDI 748
           L+ V H+N++ L+   +   S +  + + LV E L + +L   IH E  +E        +
Sbjct: 74  LKCVNHKNIISLLNVFTPQKSLEEFQDVYLVME-LMDANLCQVIHMELDHERMSYLLYQM 132

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              + +LH+     ++H DLKP NI++  + T K+ DFGLAR
Sbjct: 133 LCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 171

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 102/395 (25%), Positives = 161/395 (40%), Gaps = 80/395 (20%)

Query: 93  NLSFLRSIQLQNNKL--SGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
           +LS L S+ L +     S +    + NL  L  L+++  N        + +LT L  LDL
Sbjct: 65  SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLN-LNRLRSNISELLELTNLTSLDL 123

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
             N IT                           IPP I  L         NLK LDL+ N
Sbjct: 124 DNNNIT--------------------------DIPPLIGLL-------KSNLKELDLSDN 150

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLH 270
           ++  ++PS + N+ +L +L L+ N L                            +P  L 
Sbjct: 151 KIE-SLPSPLRNLPNLKNLDLSFNDL--------------------------SDLPKLLS 183

Query: 271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
           NL+N+  + ++ N +   LPP +  L  L   ++  N I        +  ++SL+N  +L
Sbjct: 184 NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSI--------IELLSSLSNLKNL 234

Query: 331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS 390
           + L L  N+ E  +PESIGN SN L  L L  N I     +S+G L +L  LDLS NS+S
Sbjct: 235 SGLELSNNKLE-DLPESIGNLSN-LETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLS 290

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS 450
             +P+       L +L L  N +       L     L   ++  N  T   P +    +S
Sbjct: 291 NALPL---IALLLLLLELLLNLLLTLKALELKLNSILLNNNILSNGET-SSPEALSILES 346

Query: 451 LLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
           L ++   +N ++ +     +   P  I  L ++V 
Sbjct: 347 LNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVK 381

Length = 394

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 44/190 (23%)

Query: 669 IGSGSFGSVL--HNERTGSW--------------KSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ TG+               + ++ E E L    H  +VKL+ +  
Sbjct: 20  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGA-F 78

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVP 762
             D K    L ++ EF   G++ D I  E    L           +  AL YLH+   + 
Sbjct: 79  YWDGK----LWIMIEFCPGGAV-DAIMLELDRGLTEPQIQVICRQMLEALQYLHS---MK 130

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           ++H DLK GN+LL  +   K+ DFG++        N  ++     F+G+  ++ PE  + 
Sbjct: 131 IIHRDLKAGNVLLTLDGDIKLADFGVS------AKNVKTLQRRDSFIGTPYWMAPEVVMC 184

Query: 823 ERPSTAGDVP 832
           E   T  D P
Sbjct: 185 E---TMKDTP 191

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 29/155 (18%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW--IHGERKNELD 747
           I E   ++ ++H N+V+L       ++K    L LV+E++    L  +   HG R   LD
Sbjct: 46  IREISLMKELKHENIVRL-HDVIHTENK----LMLVFEYMDK-DLKKYMDTHGVRG-ALD 98

Query: 748 ITSA----------LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
             +           + + H   E  V+H DLKP N+L+++    K+ DFGLAR     V+
Sbjct: 99  PNTVKSFTYQLLKGIAFCH---ENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN 155

Query: 798 NQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDV 831
             S+   T      + Y  P+  LG R  ST+ D+
Sbjct: 156 TFSNEVVT------LWYRAPDVLLGSRTYSTSIDI 184

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 38/175 (21%)

Query: 620 GCFLIVWPIIVRKRKAKRVGVSALFKVCHPKIS----YDELRRATGNFSHENLIGSGSFG 675
           G F +VW +    R  KRV +  +  V    +S    + EL+     F H+N++ +    
Sbjct: 11  GAFGVVWSV-TDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLC-FFKHDNVLSALD-- 66

Query: 676 SVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLG 735
            +L             E   +  +   +L K+I S   L S +++    +Y+ L      
Sbjct: 67  -ILQPPHI----DPFEEIYVVTELMQSDLHKIIVSPQPLSSDHVKVF--LYQILR----- 114

Query: 736 DWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                           L YLH+     ++H D+KPGN+L++     K+ DFGLAR
Sbjct: 115 ---------------GLKYLHS---AGILHRDIKPGNLLVNSNCVLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 46/149 (30%), Positives = 61/149 (40%), Gaps = 37/149 (24%)

Query: 669 IGSGSFGSVLHNE--RTGSW-------KSFIAE--------CE-----TLRNVRHRNLVK 706
           +G G FG VL  E  +TG         K  I          CE     T  + RH  LV 
Sbjct: 7   LGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVN 66

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHNDC 759
           L  +C   +      +  V E+ + G L   IH +  +E         +   L YLH   
Sbjct: 67  LF-ACFQTEDH----VCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLH--- 118

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           E  +V+ DLK  N+LLD E   K+ DFGL
Sbjct: 119 ENKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 20/111 (18%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEF-LALVYEFLSN---------GSLGDWIH 739
           I E   L+N++H N+V L       D  + E  L LV+E+L +         G+L   +H
Sbjct: 51  IREVSLLKNLKHANIVTL------HDIIHTERCLTLVFEYLDSDLKQYLDNCGNLMS-MH 103

Query: 740 GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             +     +   L Y H   +  ++H DLKP N+L++E+   K+ DFGLAR
Sbjct: 104 NVKIFMFQLLRGLSYCH---KRKILHRDLKPQNLLINEKGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 49/216 (22%)

Query: 661 GNFSHENLIGSGSFGSVLH--------NERTGSWKS------------FIAECETLRNVR 700
            + + + +IG+G FG V           E   + K+            F++E   +    
Sbjct: 5   SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFS 64

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITS 750
           H N+++L    +    K      ++ E++ NG+L  ++  +   E            I +
Sbjct: 65  HHNIIRLEGVVTKF--KPA---MIITEYMENGALDKYLR-DHDGEFSSYQLVGMLRGIAA 118

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YL +   +  VH DL   NIL++  +  KV DFGL+R L +  +   + S   +   
Sbjct: 119 GMKYLSD---MNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKI--- 172

Query: 811 SIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            I +  PE     + ++A DV +       F IV W
Sbjct: 173 PIRWTAPEAIAYRKFTSASDVWS-------FGIVMW 201

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 49/176 (27%), Positives = 78/176 (44%), Gaps = 30/176 (17%)

Query: 663 FSHENLIGSGSFGSVLH--NERTGSWKSF-IAECETLRNVRHRNLVKLITSCSSLDSKNM 719
           F+    IG GSFG V    + RT    +  I + E   +    ++ + IT  S  DS  +
Sbjct: 6   FTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAED-EIEDIQQEITVLSQCDSPYV 64

Query: 720 ----------EFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVP 762
                       L ++ E+L  GS  D +     +E  I +        LDYLH++ ++ 
Sbjct: 65  TKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKI- 123

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             H D+K  N+LL E+   K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 124 --HRDIKAANVLLSEQGDVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 171

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 46.8 bits (112), Expect = 3e-05
 Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 27/166 (16%)

Query: 678 LHNERTGSWKSFIAECETLRNVRHRNLVKL--ITSCSSLDSKNMEFLALVYEF------- 728
           +  E+ G   + + E   L  ++H N+V +  +     +   N++ + +V E+       
Sbjct: 40  MEKEKEGFPITSLREINILLKLQHPNIVTVKEV-----VVGSNLDKIYMVMEYVEHDLKS 94

Query: 729 -LSNGSLGDWIHGERKNEL-DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
            +       ++  E K  +  + S + +LH++    ++H DLK  N+LL+     K+ DF
Sbjct: 95  LMETMK-QPFLQSEVKCLMLQLLSGVAHLHDNW---ILHRDLKTSNLLLNNRGILKICDF 150

Query: 787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDV 831
           GLAR     +   + +  T        Y  PE  LG +  STA D+
Sbjct: 151 GLAREYGSPLKPYTQLVVTL------WYRAPELLLGAKEYSTAIDM 190

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 39/194 (20%)

Query: 657 RRATGNFSHENLIGSGSFGSV-----LHNERTGSWKSFIA-------ECETLRNVRHRNL 704
           R    ++   N+IG+GSFG V     +      + K  +        E   ++N+ H N+
Sbjct: 62  RSPNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINI 121

Query: 705 VKL----ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDIT 749
           + L     T C   + KN+ FL +V EF+         H  R N              + 
Sbjct: 122 IFLKDYYYTECFKKNEKNI-FLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLC 180

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSISSTHVF 808
            AL Y+H+     + H DLKP N+L+D    T K+ DFG A+ LL     Q S+S    +
Sbjct: 181 RALAYIHSKF---ICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLA---GQRSVS----Y 230

Query: 809 MGSIGYVPPEYGLG 822
           + S  Y  PE  LG
Sbjct: 231 ICSRFYRAPELMLG 244

Length = 440

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 36/131 (27%)

Query: 686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI------- 738
            + F  E E + +++H N+V L+  C+       +   +++E+L++G L +++       
Sbjct: 52  QQEFRQEAELMSDLQHPNIVCLLGVCT-----KEQPTCMLFEYLAHGDLHEFLVRNSPHS 106

Query: 739 -------HGERKNELD----------ITSALDYL--HNDCEVPVVHSDLKPGNILLDEEM 779
                      K+ LD          I + ++YL  H+      VH DL   N L+ E +
Sbjct: 107 DVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH-----FVHRDLAARNCLVGEGL 161

Query: 780 TAKVGDFGLAR 790
           T K+ DFGL+R
Sbjct: 162 TVKISDFGLSR 172

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.5 bits (110), Expect = 3e-05
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 36/154 (23%)

Query: 669 IGSGSFGSV-------------------LHNERTGSWKSFIAECETLRNVR---HRNLVK 706
           IG G++G V                   +     G   S I E   LR++    H N+V+
Sbjct: 9   IGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVR 68

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLH 756
           L   C+   +     L LV+E +    L  ++             +     +   LD+LH
Sbjct: 69  LFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH 127

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +     VVH DLKP NIL+      K+ DFGLAR
Sbjct: 128 SH---RVVHRDLKPQNILVTSSGQIKLADFGLAR 158

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 51/167 (30%)

Query: 667 NLIGSGSFGSVLHNE-------------------RTGS----WKSFIAECETLRNVRHRN 703
           N +GSG+FG V                       R G+     K F+ E   + N  H N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------LDI 748
           +VKL+  C   +        ++ E +  G L  ++   R                  LD+
Sbjct: 61  IVKLLGVCLLNEP-----QYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDV 115

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEE-----MTAKVGDFGLAR 790
                YL    ++  +H DL   N L+ E+        K+GDFGLAR
Sbjct: 116 AKGCVYLE---QMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLAR 159

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 46.3 bits (110), Expect = 4e-05
 Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 36/150 (24%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G V                  L  E  G   + I E   L+ ++H N+V+L   
Sbjct: 10  IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV 69

Query: 711 CSSLDSKNMEFLALVYEFLS------NGSLGDWIHGER--KNEL-DITSALDYLHNDCEV 761
             S + +    L LV+E+L         S  D+    R  K  L  I   + Y H+    
Sbjct: 70  VHS-EKR----LYLVFEYLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH--- 121

Query: 762 PVVHSDLKPGNILLDEEMTA-KVGDFGLAR 790
            V+H DLKP N+L+D    A K+ DFGLAR
Sbjct: 122 RVLHRDLKPQNLLIDRRTNALKLADFGLAR 151

Length = 294

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 47.2 bits (112), Expect = 4e-05
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 13/101 (12%)

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIH--------GERKNELDITSALDYLHNDCEVPVV 764
           SL S N   + LV E+L  G +   +H           K   ++  ALDYLH      ++
Sbjct: 72  SLQSAN--NVYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRH---GII 126

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
           H DLKP N+L+  E   K+ DFGL++  L R  N   I +T
Sbjct: 127 HRDLKPDNMLISNEGHIKLTDFGLSKVTLNRELNMMDILTT 167

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)

Query: 687 KSFIAECETLRNVRHRNLVKLI-TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE 745
           + F+ E   ++   H N++KLI  S  S     +    ++  F+ +G L  ++   R  E
Sbjct: 46  EEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGE 105

Query: 746 --------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                         +DI S ++YL +      +H DL   N +L+E MT  V DFGL++
Sbjct: 106 EPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADFGLSK 161

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 64/259 (24%)

Query: 680 NERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH 739
           N  +   +  ++E   L+ V H +++KL  +CS         L L+ E+   GSL  ++ 
Sbjct: 41  NASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQ-----DGPLLLIVEYAKYGSLRSFLR 95

Query: 740 GERKNE-----LDITSALDYLHNDCEVPV------------------------VHSDLKP 770
             RK        D      YL N  E  +                        VH DL  
Sbjct: 96  ESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAA 155

Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGD 830
            N+L+ E    K+ DFGL+R + E     S +        S G +P ++   E  S    
Sbjct: 156 RNVLVAEGRKMKISDFGLSRDVYE---EDSYVKR------SKGRIPVKWMAIE--SLFDH 204

Query: 831 VPTSESFAGEFNIVKWVESNL---------PENVLQVLDPELRQLMTSNESQTIQLHDCL 881
           + T++S    F ++ W    L         PE +  +L    R     N S+ +      
Sbjct: 205 IYTTQSDVWSFGVLLWEIVTLGGNPYPGIAPERLFNLLKTGYRMERPENCSEEMY----- 259

Query: 882 ITIIGSVGLSCTTESPGGR 900
                ++ L+C  + P  R
Sbjct: 260 -----NLMLTCWKQEPDKR 273

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 46.6 bits (110), Expect = 4e-05
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 25/124 (20%)

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDC 759
           SC    S+    L LV E+++ G L    H +R+ +L          +I  AL++LH   
Sbjct: 63  SCFQTTSR----LFLVIEYVNGGDL--MFHMQRQRKLPEEHARFYAAEICIALNFLH--- 113

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           E  +++ DLK  N+LLD +   K+ D+G+ +  L   D      +T  F G+  Y+ PE 
Sbjct: 114 ERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD------TTSTFCGTPNYIAPEI 167

Query: 820 GLGE 823
             GE
Sbjct: 168 LRGE 171

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 46.0 bits (109), Expect = 5e-05
 Identities = 50/229 (21%), Positives = 75/229 (32%), Gaps = 76/229 (33%)

Query: 661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRN 698
            N  +   IG G+FG V      G                          F  E   +  
Sbjct: 5   NNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAE 64

Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD--------WIH----------- 739
             H N+VKL+  C+       + + L++E+++ G L +                      
Sbjct: 65  FDHPNIVKLLGVCAV-----GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARK 119

Query: 740 -GERKNEL----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
            G     L           + + + YL    E   VH DL   N L+ E M  K+ DFGL
Sbjct: 120 CGLNPLPLSCTEQLCIAKQVAAGMAYL---SERKFVHRDLATRNCLVGENMVVKIADFGL 176

Query: 789 ARFLLERVDNQSSISSTHVFMGS------IGYVPPEYGLGERPSTAGDV 831
           +R          +I S   +  S      I ++PPE     R +T  DV
Sbjct: 177 SR----------NIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDV 215

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 45/244 (18%)

Query: 669 IGSGSFGS-VLHNERTGS----WKSF-------------IAECETLRNVRHRNLVKLITS 710
           +G G+FG   L+          WK               + E   L  ++H N++     
Sbjct: 8   LGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNH 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDCE 760
              +D      L +  E+ + G+L D I  ++    +          I SA+ Y+H   +
Sbjct: 68  --FMDDNT---LLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIH---K 119

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H D+K  NI L +    K+GDFG+++ L       S  S     +G+  Y+ PE  
Sbjct: 120 AGILHRDIKTLNIFLTKAGLIKLGDFGISKIL------GSEYSMAETVVGTPYYMSPELC 173

Query: 821 LGERPSTAGDVPTSESFAGEFNIVKWV--ESNLPENVLQVLDPELRQLMTSNESQTIQL- 877
            G + +   D+        E   +K     +N    V++++      +++   S+ I L 
Sbjct: 174 QGVKYNFKSDIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVSVYSSELISLV 233

Query: 878 HDCL 881
           H  L
Sbjct: 234 HSLL 237

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 46.1 bits (109), Expect = 5e-05
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 46/193 (23%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFI--------------AECETLRNVRHRNLVK------L 707
           ++G GSFG VL  E  G  + F                EC     V  R L        L
Sbjct: 2   VLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTM---VEKRVLALAWENPFL 58

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYLHNDC 759
                +  +K  E L  V EFL+ G L   I  + + +L        +I   L +LH+  
Sbjct: 59  THLYCTFQTK--EHLFFVMEFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSK- 115

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV--DNQSSISSTHVFMGSIGYVPP 817
              +++ DLK  N++LD +   K+ DFG+ +   E V  DN++S      F G+  Y+ P
Sbjct: 116 --GIIYRDLKLDNVMLDRDGHIKIADFGMCK---ENVFGDNRAS-----TFCGTPDYIAP 165

Query: 818 EYGLGERPSTAGD 830
           E   G + + + D
Sbjct: 166 EILQGLKYTFSVD 178

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 17/111 (15%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----RKN 744
           F+ E   L+   H N+V+LI  C+       + + +V E +  G    ++  E    +  
Sbjct: 40  FLQEARILKQYSHPNIVRLIGVCT-----QKQPIYIVMELVQGGDFLTFLRTEGPRLKVK 94

Query: 745 EL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           EL     +  + ++YL +      +H DL   N L+ E+   K+ DFG++R
Sbjct: 95  ELIQMVENAAAGMEYLESKH---CIHRDLAARNCLVTEKNVLKISDFGMSR 142

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 63/174 (36%)

Query: 669 IGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNV-RHRN 703
           +G G FG V+  E  G  K                          I+E E ++ + +H+N
Sbjct: 26  LGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 85

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPV 763
           ++ L+ +C+  D      L ++ E+ S G+L +++   R         ++Y +N  +VP 
Sbjct: 86  IINLLGACTQ-DGP----LYVIVEYASKGNLREYLRARRP------PGMEYCYNPTQVPE 134

Query: 764 ---------------------------VHSDLKPGNILLDEEMTAKVGDFGLAR 790
                                      +H DL   N+L+ E+   K+ DFGLAR
Sbjct: 135 EQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLAR 188

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 44/177 (24%)

Query: 669 IGSGSFGSV---------------LHNERTGSWKSFIAECETLRNV----RHRNLVKLIT 709
           +G G +G V                  +      + +    T R++    +   LVKL+ 
Sbjct: 9   VGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLY 68

Query: 710 SCSSLDSKNMEFLALVY-------EFLSN-GSLGDWIHGERKNELDITSALDYLHNDCEV 761
           +    D + + +LA+ Y         L+N G L +     R    ++  A+D LH   E+
Sbjct: 69  AFQ--DDEYL-YLAMEYVPGGDFRTLLNNLGVLSE--DHARFYMAEMFEAVDALH---EL 120

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             +H DLKP N L+D     K+ DFGL++ ++            +  +GS  Y+ PE
Sbjct: 121 GYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYA---------NSVVGSPDYMAPE 168

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 35/151 (23%)

Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +GSG+FG V                      NE++      + E E +  + +  +V++I
Sbjct: 3   LGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVR-DEMMREAEIMHQLDNPYIVRMI 61

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EV 761
             C +      E L LV E  S G L  ++ G +K+E+ +++ ++ +H            
Sbjct: 62  GVCEA------EALMLVMEMASGGPLNKFLSG-KKDEITVSNVVELMHQVSMGMKYLEGK 114

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             VH DL   N+LL  +  AK+ DFGL++ L
Sbjct: 115 NFVHRDLAARNVLLVNQHYAKISDFGLSKAL 145

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 45.8 bits (108), Expect = 6e-05
 Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 34/181 (18%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFI--------------AECETLRNVRHRNLVKL 707
           +F+   ++G GSFG V+  ER G+ + +                EC T+   R   L   
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVEC-TMVEKRVLALSGK 59

Query: 708 ITSCSSLDS--KNMEFLALVYEFLSNGSLGDWIH--GERKN------ELDITSALDYLHN 757
               + L S  + M+ L  V E+++ G L   I   G  K         +I   L +LH+
Sbjct: 60  PPFLTQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHS 119

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +++ DLK  N++LD E   K+ DFG+ +      +N     +T  F G+  Y+ P
Sbjct: 120 K---GIIYRDLKLDNVMLDSEGHIKIADFGMCK------ENMWDGVTTKTFCGTPDYIAP 170

Query: 818 E 818
           E
Sbjct: 171 E 171

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 45.7 bits (109), Expect = 6e-05
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           I   L Y+H+     V+H DLKP N+LL+     K+ DFGLAR
Sbjct: 115 ILRGLKYIHS---ANVLHRDLKPSNLLLNTNCDLKICDFGLAR 154

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 45.5 bits (108), Expect = 7e-05
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL-----VYEFLSNGSLGDWIHGE-- 741
            + E   L  + H+N++ ++  C                  +  FL    LG+  + +  
Sbjct: 55  LLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQAL 114

Query: 742 RKNEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
              +L      I   + YLH      V+H D+   N ++DEE+  K+ D  L+R L
Sbjct: 115 STQQLVHMAIQIACGMSYLHK---RGVIHKDIAARNCVIDEELQVKITDNALSRDL 167

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 50/197 (25%), Positives = 80/197 (40%), Gaps = 44/197 (22%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRN 703
           F    ++G G FG V   +   + K +                   + E + L  V  R 
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF 61

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKNE--------LDITSALD 753
           +V L  +  + D+     L LV   ++ G L   I+  GE   E         +I   L+
Sbjct: 62  VVSLAYAYETKDA-----LCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLE 116

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
            LH +    +V+ DLKP NILLD+    ++ D GLA  + E    +  +       G++G
Sbjct: 117 DLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRV-------GTVG 166

Query: 814 YVPPEYGLGERPSTAGD 830
           Y+ PE    ER + + D
Sbjct: 167 YMAPEVVKNERYTFSPD 183

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 45.5 bits (108), Expect = 8e-05
 Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 25/128 (19%)

Query: 674 FGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEF--LALVYEF 728
           F +V H +R   ++  +     ++ V H+N++ L+   T   SL+    EF  + LV E 
Sbjct: 53  FQNVTHAKRA--YRELV----LMKLVNHKNIIGLLNVFTPQKSLE----EFQDVYLVMEL 102

Query: 729 LSNGSLGDWIHGERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK 782
           + + +L   I  +  +E        +   + +LH+     ++H DLKP NI++  + T K
Sbjct: 103 M-DANLCQVIQMDLDHERMSYLLYQMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLK 158

Query: 783 VGDFGLAR 790
           + DFGLAR
Sbjct: 159 ILDFGLAR 166

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 45.2 bits (107), Expect = 8e-05
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 36/175 (20%)

Query: 669 IGSGSFGSVLHNERTGSWKSFI------------------AECETLRNVRHRNLVKLITS 710
           IG GSFG  +  +     K ++                   E   L N++H N+V+   S
Sbjct: 8   IGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQES 67

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EVPV 763
                +     L +V ++   G L   I+ +R         LD+    C       +  +
Sbjct: 68  FEENGN-----LYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKI 122

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H D+K  NI L ++ T K+GDFG+AR L       S++      +G+  Y+ PE
Sbjct: 123 LHRDIKSQNIFLTKDGTIKLGDFGIARVL------NSTVELARTCIGTPYYLSPE 171

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 10/84 (11%)

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           +   L YLH   ++  +H D+KP NIL++     K+ DFG++  L   V+   S++ T  
Sbjct: 109 VLKGLTYLHEKHKI--IHRDVKPSNILVNSRGQIKLCDFGVSGQL---VN---SLAKT-- 158

Query: 808 FMGSIGYVPPEYGLGERPSTAGDV 831
           F+G+  Y+ PE   G   S   D+
Sbjct: 159 FVGTSSYMAPERIQGNDYSVKSDI 182

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 18/110 (16%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSN---------GSLGDWIHG 740
           I E   L++++H N+V L     +  S     L LV+E+L           G++   +H 
Sbjct: 52  IREVSLLKDLKHANIVTLHDIVHTDKS-----LTLVFEYLDKDLKQYMDDCGNIMS-MHN 105

Query: 741 ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            +     I   L Y H      V+H DLKP N+L++E    K+ DFGLAR
Sbjct: 106 VKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 45.0 bits (107), Expect = 8e-05
 Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 35/149 (23%)

Query: 669 IGSGSFGSVL--HNERTGSW-------KSF--IAECETLRNVR-------HRNLVKLITS 710
           IG G+F  VL   + +TG +       K F  + +   LR ++       H N+++LI  
Sbjct: 7   IGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEV 66

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELDITS-------ALDYLHNDCEV 761
               D K    LALV+E L + +L + I G ++   E  + S       +LD++H +   
Sbjct: 67  L--FDRKTGR-LALVFE-LMDMNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRN--- 119

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            + H D+KP NIL+ ++   K+ DFG  R
Sbjct: 120 GIFHRDIKPENILIKDD-ILKLADFGSCR 147

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 22/60 (36%), Positives = 30/60 (50%)

Query: 402 GLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI 461
            L+ L L+ N +      +   L  L  +DLSGN LT   P +F    SL S+DLS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 506 SLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
           +L+ L ++ N+ +         L  L+VLDLS N L+   P     L +LRSL+L+ NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 44.9 bits (106), Expect = 1e-04
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 15/127 (11%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT 749
           I E   +R  +H N+V  + S    D      L +V E+L+ GSL D +     +E  I 
Sbjct: 64  INEILVMRENKHPNIVNYLDSYLVGDE-----LWVVMEYLAGGSLTDVVTETCMDEGQIA 118

Query: 750 S-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
           +       AL++LH++    V+H D+K  NILL  + + K+ DFG    +      +S++
Sbjct: 119 AVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM 175

Query: 803 SSTHVFM 809
             T  +M
Sbjct: 176 VGTPYWM 182

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 22/121 (18%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE------- 741
           F+ E + +  +++ N+++L+  C S D      L ++ E++ NG L  ++          
Sbjct: 64  FLKEIKIMSRLKNPNIIRLLGVCVSDDP-----LCMITEYMENGDLNQFLSQREIESTFT 118

Query: 742 RKNELDITSALDYLHNDCEVP----------VVHSDLKPGNILLDEEMTAKVGDFGLARF 791
             N +   S  + L+   ++            VH DL   N L+    T K+ DFG++R 
Sbjct: 119 HANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRN 178

Query: 792 L 792
           L
Sbjct: 179 L 179

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 45.4 bits (107), Expect = 1e-04
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 26/167 (15%)

Query: 677 VLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD 736
           +L++ER  ++    +E   L    H  +VK        D K+ + L L+ E+ S G L  
Sbjct: 102 MLNDERQAAYAR--SELHCLAACDHFGIVKHFD-----DFKSDDKLLLIMEYGSGGDLNK 154

Query: 737 WIHGERKNEL------------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG 784
            I    K  L             I  ALD +H+     ++H DLK  NI L      K+G
Sbjct: 155 QIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRK---MMHRDLKSANIFLMPTGIIKLG 211

Query: 785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           DFG ++   + V    S+     F G+  Y+ PE    +R S   D+
Sbjct: 212 DFGFSKQYSDSV----SLDVASSFCGTPYYLAPELWERKRYSKKADM 254

Length = 478

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 50/193 (25%), Positives = 84/193 (43%), Gaps = 37/193 (19%)

Query: 662 NFSHENLIGSGSFGSV-LHNERTGSW-----KSFIAECETLRN--VRH----RNLVKLIT 709
           +F+    +G+GSFG V L   +   +     K F  + + ++   V H    R ++  I 
Sbjct: 31  DFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRF-EKSKIIKQKQVDHVFSERKILNYIN 89

Query: 710 S--CSSLDS--KNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
              C +L    K+  +L LV EF+  G    ++   ++   D        I    +YL +
Sbjct: 90  HPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQS 149

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              + +V+ DLKP N+LLD++   K+ DFG A+ +  R         T+   G+  Y+ P
Sbjct: 150 ---LNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR---------TYTLCGTPEYIAP 197

Query: 818 EYGLGERPSTAGD 830
           E  L      A D
Sbjct: 198 EILLNVGHGKAAD 210

Length = 340

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 46/175 (26%), Positives = 69/175 (39%), Gaps = 35/175 (20%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFI-----------------AECETLRNVRHRNLVKLITS 710
           ++G GSFG  L  +   S + +                   E   L  ++H N+V    S
Sbjct: 7   VVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKES 66

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EVPV 763
             +        L +V E+   G L   I  +R       + L +    C       E  V
Sbjct: 67  FEADGH-----LYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRV 121

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H D+K  NI L +    K+GDFG AR L     +  + + T+V  G+  YVPPE
Sbjct: 122 LHRDIKSKNIFLTQNGKVKLGDFGSARLL----TSPGAYACTYV--GTPYYVPPE 170

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 8/86 (9%)

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR-FLLERVDNQSSISSTH 806
           I   L Y+H+     V+H DLKPGN+L++ +   K+ DFGLAR F     +N   ++   
Sbjct: 114 ILCGLKYIHS---ANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTE-- 168

Query: 807 VFMGSIGYVPPEYGLGERP-STAGDV 831
            ++ +  Y  PE  L  +  + A DV
Sbjct: 169 -YVATRWYRAPEIMLSFQSYTKAIDV 193

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 16/111 (14%)

Query: 692 ECET--LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG--------E 741
           ECE   L+N+ H  +V+       L       L++  E +  GS+ D +           
Sbjct: 52  ECEIQLLKNLLHERIVQYY---GCLRDPMERTLSIFMEHMPGGSIKDQLKSYGALTENVT 108

Query: 742 RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           RK    I   + YLH++    +VH D+K  NIL D     K+GDFG ++ L
Sbjct: 109 RKYTRQILEGVSYLHSNM---IVHRDIKGANILRDSVGNVKLGDFGASKRL 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNEL 437
           +L  LDLS N ++         L  L+VL L+GN +    P + + L  L  +DLSGN L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 37/150 (24%)

Query: 668 LIGSGSFGSV----LHNERTGSWKS------------FIAECETLRNVRHRNLVKLITSC 711
           L+G G+FG V    L ++   + K+            F++E   L+   H N+VKLI  C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN-DCE 760
           +       + + +V E +  G    ++  ++K+EL          D  + + YL + +C 
Sbjct: 62  T-----QRQPIYIVMELVPGGDFLSFLR-KKKDELKTKQLVKFALDAAAGMAYLESKNC- 114

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              +H DL   N L+ E    K+ DFG++R
Sbjct: 115 ---IHRDLAARNCLVGENNVLKISDFGMSR 141

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 16/109 (14%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNG------SLGDWI--HGE 741
           I E   L++++H N+V L     +  S     L LV+E+L           G+ I  H  
Sbjct: 52  IREVSLLKDLKHANIVTLHDIIHTEKS-----LTLVFEYLDKDLKQYLDDCGNSINMHNV 106

Query: 742 RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +     +   L+Y H      V+H DLKP N+L++E    K+ DFGLAR
Sbjct: 107 KLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLAR 152

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 34/148 (22%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G+V                  L ++  G   S + E   L+ ++H+N+V+L   
Sbjct: 8   IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67

Query: 711 CSSLDSKNMEFLALVYEFLSNG--SLGDWIHGE------RKNELDITSALDYLHNDCEVP 762
             S D K    L LV+E+         D  +G+      +     +   L + H      
Sbjct: 68  LHS-DKK----LTLVFEYCDQDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCH---SHN 119

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           V+H DLKP N+L+++    K+ DFGLAR
Sbjct: 120 VLHRDLKPQNLLINKNGELKLADFGLAR 147

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 34/128 (26%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT 749
           I E   ++ +++ N+V  + S    D      L +V E+L+ GSL D +     +E  I 
Sbjct: 64  INEILVMKELKNPNIVNFLDSFLVGDE-----LFVVMEYLAGGSLTDVVTETCMDEAQIA 118

Query: 750 S-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
           +       AL++LH +    V+H D+K  N+LL  + + K+ DFG    +      +S++
Sbjct: 119 AVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTM 175

Query: 803 SSTHVFMG 810
             T  +M 
Sbjct: 176 VGTPYWMA 183

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 44.4 bits (105), Expect = 2e-04
 Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 15/105 (14%)

Query: 692 ECETLRNVRHRNLVKLI-------TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN 744
           E + L+ + HR ++ LI       T C  +     +    V +      L   I  +R+ 
Sbjct: 136 EIDILKTISHRAIINLIHAYRWKSTVCMVMPKYKCDLFTYV-DRSGPLPLEQAITIQRR- 193

Query: 745 ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
              +  AL YLH      ++H D+K  NI LDE   A +GDFG A
Sbjct: 194 ---LLEALAYLH---GRGIIHRDVKTENIFLDEPENAVLGDFGAA 232

Length = 392

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT 749
           I E   +R  ++ N+V  + S    D      L +V E+L+ GSL D +     +E  I 
Sbjct: 64  INEILVMRENKNPNIVNYLDSYLVGDE-----LWVVMEYLAGGSLTDVVTETCMDEGQIA 118

Query: 750 S-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
           +       ALD+LH++    V+H D+K  NILL  + + K+ DFG    +      +S++
Sbjct: 119 AVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM 175

Query: 803 SSTHVFMG 810
             T  +M 
Sbjct: 176 VGTPYWMA 183

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 22/122 (18%)

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKNELD--------ITSALDYLH 756
           ++    + +SK    L LV   ++ G L   I+  GER  E++        IT  + +LH
Sbjct: 55  IVNLAYAFESKT--HLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLH 112

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
               + +V+ D+KP N+LLD++   ++ D GLA   +E  D ++         G+ GY+ 
Sbjct: 113 ---SMDIVYRDMKPENVLLDDQGNCRLSDLGLA---VELKDGKTITQRA----GTNGYMA 162

Query: 817 PE 818
           PE
Sbjct: 163 PE 164

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 39/191 (20%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLIT- 709
           +G G+FG V                  +HNE+ G   + + E + L+ ++H N+V LI  
Sbjct: 16  LGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDM 75

Query: 710 ----SCSSLDSKNMEFLALVYE------FLSNGSLGDWIHGERKN-ELDITSALDYLHND 758
                  S   +   ++   Y        L N S+      + K   L +   ++YLH  
Sbjct: 76  AVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPSV-KLTESQIKCYMLQLLEGINYLH-- 132

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS--STHVFMGSI---G 813
            E  ++H D+K  NIL+D +   K+ DFGLAR       N        T  +   +    
Sbjct: 133 -ENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRW 191

Query: 814 YVPPEYGLGER 824
           Y PPE  LGER
Sbjct: 192 YRPPELLLGER 202

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 39/186 (20%)

Query: 662 NFSHENLIGSGSFGSV-LHNERTGSWKSFIAECETLR---------NVRH----RNLVKL 707
           NF    ++G+G++G V L  + TG     +   + L+          V H    RN+++ 
Sbjct: 1   NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEH 60

Query: 708 ITSCSSLDSKNMEF-----LALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
           +     L + +  F     L L+ +++S G +  + H  +++            +I  AL
Sbjct: 61  VRQSPFLVTLHYAFQTEAKLHLILDYVSGGEM--FTHLYQRDNFSEDEVRFYSGEIILAL 118

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           ++LH   ++ +V+ D+K  NILLD E    + DFGL++  L     +     T+ F G+I
Sbjct: 119 EHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKER-----TYSFCGTI 170

Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 171 EYMAPE 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 49/213 (23%)

Query: 669 IGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLI 708
           +G G FGSV+  +                         + F++E   ++   H N+++LI
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 709 TSC-SSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------------KNELDITSALD 753
             C  +++S+      ++  F+ +G L  ++   R              K   DI S ++
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGME 126

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YL +      +H DL   N +L+E M   V DFGL++ +          +  +   G I 
Sbjct: 127 YLSSK---SFIHRDLAARNCMLNENMNVCVADFGLSKKIY---------NGDYYRQGRIA 174

Query: 814 YVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            +P ++   E  S A  V T++S    F +  W
Sbjct: 175 KMPVKWIAIE--SLADRVYTTKSDVWSFGVTMW 205

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           AL+YL    E+ ++H D+KP NILLD     K+ DFG++  L++      SI+ T    G
Sbjct: 119 ALNYLKE--ELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD------SIAKTRD-AG 169

Query: 811 SIGYVPPE 818
              Y+ PE
Sbjct: 170 CRPYMAPE 177

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 27/126 (21%)

Query: 687 KSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE 745
              ++E E ++ + +H+N++ L+  C+         L +V E+ ++G+L D++   R   
Sbjct: 60  SDLVSEMEMMKMIGKHKNIINLLGVCTQEGP-----LYVVVEYAAHGNLRDFLRARRPPG 114

Query: 746 LDITSALDYLHND---------CEVPV------------VHSDLKPGNILLDEEMTAKVG 784
              +        +             V            +H DL   N+L+ E+   K+ 
Sbjct: 115 EYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIA 174

Query: 785 DFGLAR 790
           DFGLAR
Sbjct: 175 DFGLAR 180

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.2 bits (104), Expect = 3e-04
 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 15/169 (8%)

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
           ++   + NL  L+++ L  N LS +LP+ + NL  L  L++S N +  +LP  I  L+ L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
           + LDL  N I        L NL++L  L    N L           +P  +  L NL+ L
Sbjct: 212 EELDLSNNSI--IELLSSLSNLKNLSGLELSNNKL---------EDLPESIGNLSNLETL 260

Query: 206 DLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF 254
           DL+ N++  +  S++ ++T+L  L L+ N L   +P      L   L  
Sbjct: 261 DLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307

Length = 394

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 43.9 bits (103), Expect = 3e-04
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 39/130 (30%)

Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
            ++E E ++ + +H+N++ L+ +C+         L ++ E+ S G+L +++   R     
Sbjct: 64  LVSEMEMMKMIGKHKNIINLLGACTQDGP-----LYVLVEYASKGNLREYLRARRP---- 114

Query: 748 ITSALDYLHNDCEVP---------------------------VVHSDLKPGNILLDEEMT 780
               +DY  + C++P                            +H DL   N+L+ E+  
Sbjct: 115 --PGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNV 172

Query: 781 AKVGDFGLAR 790
            K+ DFGLAR
Sbjct: 173 MKIADFGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 44.1 bits (104), Expect = 3e-04
 Identities = 39/176 (22%), Positives = 66/176 (37%), Gaps = 41/176 (23%)

Query: 632 KRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWK---- 687
           K+KA+ V  S  + V                      +  GS G V    + G       
Sbjct: 56  KQKAREVVASLGYTVIKT-------------------LTPGSEGRVFVATKPGQPDPVVL 96

Query: 688 ------SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL------VYEFLSNGSLG 735
                 + + E   L+NV H +++++     +L S  +  + L      +Y +L+  S  
Sbjct: 97  KIGQKGTTLIEAMLLQNVNHPSVIRMK---DTLVSGAITCMVLPHYSSDLYTYLTKRSRP 153

Query: 736 DWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
             I      E  I   L YLH      ++H D+K  NI +++     +GD G A+F
Sbjct: 154 LPIDQALIIEKQILEGLRYLH---AQRIIHRDVKTENIFINDVDQVCIGDLGAAQF 206

Length = 357

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 44/197 (22%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRN 703
           F H  ++G G FG V   +   + K +                   + E + L  V  R 
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 61

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG------ERKNEL----DITSALD 753
           +V L  +  + D+     L LV   ++ G L   I+       + +  +    +IT  L+
Sbjct: 62  VVSLAYAYETKDA-----LCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLE 116

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
            LH +    +V+ DLKP NILLD+    ++ D GLA      +    +I      +G++G
Sbjct: 117 DLHRE---RIVYRDLKPENILLDDYGHIRISDLGLA----VEIPEGETIRGR---VGTVG 166

Query: 814 YVPPEYGLGERPSTAGD 830
           Y+ PE    ER + + D
Sbjct: 167 YMAPEVVKNERYTFSPD 183

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 40/179 (22%), Positives = 69/179 (38%), Gaps = 56/179 (31%)

Query: 663 FSHENLI-----GSGSFGSVLHNERTGSWKS------------------------FIAEC 693
           F  + L+     G G FG V+  E  G  KS                         I+E 
Sbjct: 9   FPRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEM 68

Query: 694 ETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSAL 752
           E ++ + +H+N++ L+  C+         L ++ E+ + G+L +++   R    D T  +
Sbjct: 69  ELMKLIGKHKNIINLLGVCTQEGP-----LYVIVEYAAKGNLREFLRARRPPGPDYTFDI 123

Query: 753 DYLHND---------CEVPV------------VHSDLKPGNILLDEEMTAKVGDFGLAR 790
             +  +         C   V            +H DL   N+L+ E+   K+ DFGLAR
Sbjct: 124 TKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLAR 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 38/192 (19%)

Query: 657 RRATGNFSHENLIGSGSFGSVL--HNERTGSWKSFIA--------------ECETLRNVR 700
           R    +F     IGSG++G V    N  TG   +                 E   +++ +
Sbjct: 5   RNPQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCK 64

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELDIT-------SAL 752
           H N+V    S    D      L +  EF   GSL D  H     +E  I          L
Sbjct: 65  HSNIVAYFGSYLRRDK-----LWICMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGL 119

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YLH+  ++   H D+K  NILL +    K+ DFG++  +       ++I+    F+G+ 
Sbjct: 120 YYLHSKGKM---HRDIKGANILLTDNGHVKLADFGVSAQI------TATIAKRKSFIGTP 170

Query: 813 GYVPPEYGLGER 824
            ++ PE    ER
Sbjct: 171 YWMAPEVAAVER 182

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 30/176 (17%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHR--NLVKLITSCSSLDS---- 716
           F+    IG GSFG V       + K    +   L        ++ + IT  S  DS    
Sbjct: 6   FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 65

Query: 717 -------KNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVP 762
                  K+ + L ++ E+L  GS  D +     +E  I +        LDYLH++ ++ 
Sbjct: 66  KYYGSYLKDTK-LWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKI- 123

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             H D+K  N+LL E    K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 124 --HRDIKAANVLLSEHGEVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 171

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 44/181 (24%), Positives = 80/181 (44%), Gaps = 34/181 (18%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFI--------------AECETL--RNVRHRNLV 705
           +F+   ++G GSFG V+  ER G+ + +                EC  +  R +  ++  
Sbjct: 1   DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP 60

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKN------ELDITSALDYLHN 757
             +T   S   + ++ L  V E+++ G L   I   G+ K         +I+  L +LH 
Sbjct: 61  PFLTQLHSC-FQTVDRLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLH- 118

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +++ DLK  N++LD E   K+ DFG+ +      ++     +T  F G+  Y+ P
Sbjct: 119 --RRGIIYRDLKLDNVMLDSEGHIKIADFGMCK------EHMVDGVTTRTFCGTPDYIAP 170

Query: 818 E 818
           E
Sbjct: 171 E 171

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 43.1 bits (101), Expect = 3e-04
 Identities = 39/165 (23%), Positives = 64/165 (38%), Gaps = 46/165 (27%)

Query: 667 NLIGSGSFGSVLHN--ERTG-----------------SWKSFIAECETLRNV-RHRNLVK 706
           ++IG G+FG VL    ++ G                   + F  E E L  +  H N++ 
Sbjct: 1   DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 60

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------------------- 747
           L+ +C     ++  +L L  E+  +G+L D++   R  E D                   
Sbjct: 61  LLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLL 115

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    +    +   +H DL   NIL+ E   AK+ DFGL+R
Sbjct: 116 HFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR 160

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 43.3 bits (102), Expect = 4e-04
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 12/98 (12%)

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK---NELDITSALDYLHNDC- 759
           +V+L+      +      L LV+E+L +  L  ++    +     L   +   +++    
Sbjct: 63  IVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLK 121

Query: 760 ------EVPVVHSDLKPGNILLDEE-MTAKVGDFGLAR 790
                 +  V+H DLKP N+L+D++    K+ D GL R
Sbjct: 122 GVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGR 159

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 43.0 bits (102), Expect = 4e-04
 Identities = 39/151 (25%), Positives = 59/151 (39%), Gaps = 37/151 (24%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRNLVKLI 708
           L+G G  G V      G+ K F                   + E E L  + H  L  L 
Sbjct: 8   LLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLY 67

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHND 758
              +S  ++   +L LV ++   G L   +  +    L          ++  AL+YLH  
Sbjct: 68  ---ASFQTE--TYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHL- 121

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
             + +V+ DLKP NILL E     + DF L+
Sbjct: 122 --LGIVYRDLKPENILLHESGHIMLSDFDLS 150

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 43.1 bits (101), Expect = 5e-04
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 33/127 (25%)

Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
            ++E E ++ + +H+N++ L+ +C+         L ++ E+ S G+L +++   R   ++
Sbjct: 67  LVSEMEMMKMIGKHKNIINLLGACTQDGP-----LYVIVEYASKGNLREYLRARRPPGME 121

Query: 748 ------------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV 783
                                   +   ++YL +      +H DL   N+L+ E    K+
Sbjct: 122 YSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAARNVLVTENNVMKI 178

Query: 784 GDFGLAR 790
            DFGLAR
Sbjct: 179 ADFGLAR 185

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 38/182 (20%)

Query: 663 FSHENLIGSGSFGSV----------------LHNERTGSWKS---FIAECETLRNVRHRN 703
           F H  ++G G FG V                L  +R    K     + E   L  V  R 
Sbjct: 2   FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF 61

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC---- 759
           +V L  +  + D+     L LV   ++ G L   I+       D   A+ Y    C    
Sbjct: 62  VVSLAYAYETKDA-----LCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLE 116

Query: 760 ---EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 +V+ DLKP NILLD+    ++ D GLA  + E    +  +       G++GY+ 
Sbjct: 117 DLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRV-------GTVGYMA 169

Query: 817 PE 818
           PE
Sbjct: 170 PE 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 42.7 bits (100), Expect = 5e-04
 Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 46/187 (24%)

Query: 686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HG 740
           W  F  E   +  + H N+V L+   +       + + +++E+L+ G L +++     H 
Sbjct: 51  WGEFQQEASLMAELHHPNIVCLLGVVT-----QEQPVCMLFEYLNQGDLHEFLIMRSPHS 105

Query: 741 ERKNELD----ITSALD---YLHNDCEVPV----------VHSDLKPGNILLDEEMTAKV 783
           +     D    + S+LD   +LH   ++            VH DL   NIL+ E++  K+
Sbjct: 106 DVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKI 165

Query: 784 GDFGLARFLLE----RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAG 839
            D GL+R +      RV  +S +         I ++PPE  +  + S+  D+ +      
Sbjct: 166 SDLGLSREIYSADYYRVQPKSLL--------PIRWMPPEAIMYGKFSSDSDIWS------ 211

Query: 840 EFNIVKW 846
            F +V W
Sbjct: 212 -FGVVLW 217

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 42.7 bits (100), Expect = 6e-04
 Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 44/197 (22%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHRN 703
           F    ++G G FG V   +   + K +                   + E + L  V  + 
Sbjct: 2   FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF 61

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG------ERKNEL----DITSALD 753
           +V L  +  + D+     L LV   ++ G L   I+       E +  L    +I   L+
Sbjct: 62  VVNLAYAYETKDA-----LCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLE 116

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
            LH +     V+ DLKP NILLD+    ++ D GLA     ++    SI      +G++G
Sbjct: 117 DLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAV----KIPEGESIRGR---VGTVG 166

Query: 814 YVPPEYGLGERPSTAGD 830
           Y+ PE    +R + + D
Sbjct: 167 YMAPEVLNNQRYTLSPD 183

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 42.8 bits (101), Expect = 6e-04
 Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 18/110 (16%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL---------SNGSLGDWIHG 740
           I E   L++++H N+V L     +  +     L LV+E+L           G     +H 
Sbjct: 51  IREASLLKDLKHANIVTLHDIIHTKKT-----LTLVFEYLDTDLKQYMDDCGGGLS-MHN 104

Query: 741 ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            R     +   L Y H      V+H DLKP N+L+ E    K+ DFGLAR
Sbjct: 105 VRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLAR 151

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 42.6 bits (100), Expect = 6e-04
 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 8/69 (11%)

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           ++H D+KP N+L++     K+ DFG++  L+      +SI+ T+V  G+  Y+ PE   G
Sbjct: 116 ILHRDVKPSNMLVNTRGQVKLCDFGVSTQLV------NSIAKTYV--GTNAYMAPERISG 167

Query: 823 ERPSTAGDV 831
           E+     DV
Sbjct: 168 EQYGIHSDV 176

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 42.3 bits (99), Expect = 6e-04
 Identities = 46/175 (26%), Positives = 73/175 (41%), Gaps = 28/175 (16%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHR--NLVKLITSCSSLDSKNM- 719
           F+    IG GSFG V       + +    +   L        ++ + IT  S  DS  + 
Sbjct: 6   FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYIT 65

Query: 720 ---------EFLALVYEFLSNGSLGDWIHGERKNEL-------DITSALDYLHNDCEVPV 763
                      L ++ E+L  GS  D +      E        +I   LDYLH++ ++  
Sbjct: 66  RYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKI-- 123

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H D+K  N+LL E+   K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 124 -HRDIKAANVLLSEQGDVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 171

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 42.5 bits (100), Expect = 6e-04
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 18/100 (18%)

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE 760
           H N+V L+ +C+         + ++ E+   G L +++  +R++ L +    D L    +
Sbjct: 98  HENIVNLLGACTIGGP-----ILVITEYCCYGDLLNFLRRKRESFLTLE---DLLSFSYQ 149

Query: 761 VP----------VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           V            +H DL   N+LL      K+ DFGLAR
Sbjct: 150 VAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLAR 189

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 32/192 (16%)

Query: 642 ALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSV--LHNERTGSW------------- 686
            LF      +  + L   T  +     IG G++G V  + N++ GS              
Sbjct: 3   GLFPYNSSMLGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVD 62

Query: 687 KSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG----- 740
           +   AE   L+++  H N+VK        D      L LV E  + GS+ + + G     
Sbjct: 63  EEIEAEYNILQSLPNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICG 122

Query: 741 ERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL-ARFL 792
           +R +E  I+         L +LHN+    ++H D+K  NILL  E   K+ DFG+ A+  
Sbjct: 123 QRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVKLVDFGVSAQLT 179

Query: 793 LERVDNQSSISS 804
             R+   +S+ +
Sbjct: 180 STRLRRNTSVGT 191

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 36/195 (18%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNE--RTGSW-------------KSFIAECET 695
           I    LR   G F    ++G+G++G V      +TG               +    E   
Sbjct: 6   IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINM 65

Query: 696 LRNV-RHRNLVKLITS-CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------- 746
           L+    HRN+     +        + + L LV EF   GS+ D +   + N L       
Sbjct: 66  LKKYSHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAY 125

Query: 747 ---DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
              +I   L +LH      V+H D+K  N+LL E    K+ DFG++  L        ++ 
Sbjct: 126 ICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL------DRTVG 176

Query: 804 STHVFMGSIGYVPPE 818
             + F+G+  ++ PE
Sbjct: 177 RRNTFIGTPYWMAPE 191

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           L I + L+ LH       +H DL P NI ++ +   K+ DFGLAR
Sbjct: 126 LQILNGLNVLHK---WYFMHRDLSPANIFINSKGICKIADFGLAR 167

Length = 335

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 9e-04
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVH 228
           +L+ L+   N L   IP             L NLKVLDL+ N L    P     + SL  
Sbjct: 1   NLKSLDLSNNRLT-VIPDGA-------FKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRS 52

Query: 229 LRLASNQL 236
           L L+ N L
Sbjct: 53  LDLSGNNL 60

Length = 60

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 42.5 bits (100), Expect = 9e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           ++T A++ +H    +  +H D+KP NIL+D +   K+ DFGL
Sbjct: 109 ELTCAIESVHK---MGFIHRDIKPDNILIDRDGHIKLTDFGL 147

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           AL Y+H      V H DLKP NIL + +   K+ DFGLAR
Sbjct: 115 ALKYIHT---ANVFHRDLKPKNILANADCKLKICDFGLAR 151

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 41.6 bits (97), Expect = 0.001
 Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT 749
           I E   +R  ++ N+V  + S    D      L +V E+L+ GSL D +     +E  I 
Sbjct: 65  INEILVMRENKNPNIVNYLDSYLVGDE-----LWVVMEYLAGGSLTDVVTETCMDEGQIA 119

Query: 750 S-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
           +       AL++LH++    V+H D+K  NILL  + + K+ DFG    +      +S++
Sbjct: 120 AVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM 176

Query: 803 SSTHVFMG 810
             T  +M 
Sbjct: 177 VGTPYWMA 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 42/185 (22%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHR------NLVKLITSC---- 711
           +F     +G GS+GSV   +R    + +  +   L ++  +      N ++++ S     
Sbjct: 1   DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60

Query: 712 ------SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALD 753
                 + LD      L +V E+   G L   I   +K              + +   L 
Sbjct: 61  IISYKEAFLDGNK---LCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQ 117

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
            LH   E  ++H DLK  NILL      K+GD G+++ L + +   + I + H       
Sbjct: 118 ALH---EQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAK-TQIGTPH------- 166

Query: 814 YVPPE 818
           Y+ PE
Sbjct: 167 YMAPE 171

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 41.9 bits (98), Expect = 0.001
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 35/154 (22%)

Query: 662 NFSHENLIGSGSFGSV--LHNERTGSW-------KSFIAECETLRNVRHRN--------- 703
           +F    +IG G+FG V  +  + TG         K+ + E E + ++R            
Sbjct: 2   DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGA 61

Query: 704 -LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH-----GERKNELDITS---ALDY 754
            +VK+  S    D +N   L L+ EFL  G +   +       E   +  I     A+D 
Sbjct: 62  WVVKMFYSFQ--DKRN---LYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDA 116

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           +H   ++  +H D+KP N+LLD +   K+ DFGL
Sbjct: 117 IH---QLGFIHRDIKPDNLLLDAKGHVKLSDFGL 147

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 26/132 (19%)

Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----RKNE-------LD 747
           ++HRN+V+ + S S        F  +  E +  GSL   +  +    + NE         
Sbjct: 62  LKHRNIVQYLGSDSENG-----FFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQ 116

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFLLERVDNQSSISSTH 806
           I   L YLH   +  +VH D+K  N+L++      K+ DFG ++  L  ++       T 
Sbjct: 117 ILEGLKYLH---DNQIVHRDIKGDNVLVNTYSGVVKISDFGTSK-RLAGIN-----PCTE 167

Query: 807 VFMGSIGYVPPE 818
            F G++ Y+ PE
Sbjct: 168 TFTGTLQYMAPE 179

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 9/68 (13%)

Query: 145 LKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKV 204
           LK LDL  N++T  + D   + L +L+VL+   N        ++ ++ P   S L +L+ 
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGN--------NLTSISPEAFSGLPSLRS 52

Query: 205 LDLTINRL 212
           LDL+ N L
Sbjct: 53  LDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 450 SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE 509
           +L S+DLSNNR+   IP G  +        L N+  +DLS N+L+   P +     SL  
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFK-------GLPNLKVLDLSGNNLTSISPEAFSGLPSLRS 52

Query: 510 LLMAYNQF 517
           L ++ N  
Sbjct: 53  LDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 97  LRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKI 155
           L+S+ L NN+L+  +P      L  L+VL++S NNL    P   S L  L+ LDL  N +
Sbjct: 2   LKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 10/80 (12%)

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L YL+N     ++H D+KP NIL++     K+ DFG++  L+      +SI+ T  F+G+
Sbjct: 116 LTYLYN--VHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELI------NSIADT--FVGT 165

Query: 812 IGYVPPEYGLGERPSTAGDV 831
             Y+ PE   G + +   DV
Sbjct: 166 STYMSPERIQGGKYTVKSDV 185

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 0.002
 Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 40/184 (21%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFI------------------AECETLRNVRHRNLVKLIT 709
           ++GSG+ G+VL  +R    + F                   AE   L N    ++VK   
Sbjct: 39  VLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHE 98

Query: 710 SCSSLDSKNME---FLALVYEFLSNGSLGDWIHGERKNE------------LDITSALDY 754
             +  D +N E    +ALV ++ + G L   I    K              + +  A+ +
Sbjct: 99  DFAKKDPRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHH 158

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           +H+     ++H D+K  NILL      K+GDFG ++     V +   +  T  F G+  Y
Sbjct: 159 VHSK---HMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSD--DVGRT--FCGTPYY 211

Query: 815 VPPE 818
           V PE
Sbjct: 212 VAPE 215

Length = 496

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 8/72 (11%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++  A+D +H   ++  VH D+KP NIL+D     ++ DFG    L+E    QSS++   
Sbjct: 110 EMVIAIDSVH---QLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVA--- 163

Query: 807 VFMGSIGYVPPE 818
             +G+  Y+ PE
Sbjct: 164 --VGTPDYISPE 173

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 41.1 bits (96), Expect = 0.002
 Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 35/131 (26%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI---HGERKNE 745
           F+ E + L  ++  N+++L+  C   D      L ++ E++ NG L  ++   H + K E
Sbjct: 66  FLKEVKILSRLKDPNIIRLLGVCVDEDP-----LCMITEYMENGDLNQFLSSHHLDDKEE 120

Query: 746 ------------------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA 781
                                   L I S + YL +   +  VH DL   N L+ E +T 
Sbjct: 121 NGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSS---LNFVHRDLATRNCLVGENLTI 177

Query: 782 KVGDFGLARFL 792
           K+ DFG++R L
Sbjct: 178 KIADFGMSRNL 188

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 37/156 (23%)

Query: 662 NFSHENLIGSGSFGSV--LHNERTGS-------WKSFIAECETLRNVR-HRNL------- 704
           +F    +IG G+FG V  +  + TG         KS + + + L +V+  R++       
Sbjct: 2   DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSP 61

Query: 705 --VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW-IHGERKNELDITS--------ALD 753
             V L  S      ++ ++L L+ EFL  G L    I  +  +E D+T         A++
Sbjct: 62  WVVSLYYSF-----QDAQYLYLIMEFLPGGDLMTMLIKYDTFSE-DVTRFYMAECVLAIE 115

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
            +H   ++  +H D+KP NIL+D     K+ DFGL+
Sbjct: 116 AVH---KLGFIHRDIKPDNILIDRGGHIKLSDFGLS 148

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS- 750
           E + L  + H  +VK   S    D+       ++ E+     L   +   +     ++  
Sbjct: 52  EAQLLSKLDHPAIVKFHASFLERDA-----FCIITEYCEGRDLDCKLEELKHTGKTLSEN 106

Query: 751 -----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
                       + Y+H   +  ++H DLK  NI L   +  K+GDFG++R L+   D  
Sbjct: 107 QVCEWFIQLLLGVHYMH---QRRILHRDLKAKNIFLKNNLL-KIGDFGVSRLLMGSCDLA 162

Query: 800 SSISSTHVFM 809
           ++ + T  +M
Sbjct: 163 TTFTGTPYYM 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 9/68 (13%)

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           AL Y+H   +V V+H D+K  NIL+      K+ DFG+A  L     NQ+S S    F+G
Sbjct: 113 ALKYIH---KVGVIHRDIKAANILVTNTGNVKLCDFGVAALL-----NQNS-SKRSTFVG 163

Query: 811 SIGYVPPE 818
           +  ++ PE
Sbjct: 164 TPYWMAPE 171

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF--LSNGSLGDWIHGERKNE------LD 747
           ++ V H+N++ L+   +    K++E    VY    L + +L   I  E  +E        
Sbjct: 70  MKCVNHKNIISLLNVFTP--QKSLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQ 127

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +   + +LH+     ++H DLKP NI++  + T K+ DFGLAR
Sbjct: 128 MLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 167

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 11/102 (10%)

Query: 696 LRNVRHRNLVKLITSCSSLDS-KNMEFLALVYEFLSNGSLGDWIHGERKNE------LDI 748
           ++ V H+N++ L+   +   S +  + + +V E L + +L   I  E  +E        +
Sbjct: 77  MKCVNHKNIIGLLNVFTPQKSLEEFQDVYIVME-LMDANLCQVIQMELDHERMSYLLYQM 135

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              + +LH+     ++H DLKP NI++  + T K+ DFGLAR
Sbjct: 136 LCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.0 bits (96), Expect = 0.003
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 229 LRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT 288
           L L +  L G IP D+   L +L       N   G IP SL ++T+++++ +++N   G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 289 LPPGLGNLPFLRTYNIGFN 307
           +P  LG L  LR  N+  N
Sbjct: 482 IPESLGQLTSLRILNLNGN 500

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 58/229 (25%), Positives = 91/229 (39%), Gaps = 29/229 (12%)

Query: 287 GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEG---- 342
            +L  GL     L+  ++  N   + G D G   + SL  S+ L  L L+ N        
Sbjct: 71  QSLLQGLTKGCGLQELDLSDN---ALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLR 126

Query: 343 KIPESIGNFSNELSKLYLGGNHIYGKIPASIGRL----RSLTLLDLSYNSISGEIPIEIG 398
            + + + +    L KL LG N + G    ++ +     R L  L+L+ N I       + 
Sbjct: 127 LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186

Query: 399 Q----LQGLQVLGLAGNEIP----GGIPNSLANLKKLNQIDLSGNELTGEI-----PISF 445
           +       L+VL L  N +       +  +LA+LK L  ++L  N LT            
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246

Query: 446 GNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
               SLL++ LS N I  +  K +   L E+ S LE    +DL  N   
Sbjct: 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLE----LDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query: 482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL 541
           N+ ++DLS+N L+     + K   +L+ L ++ N  +   P   + L  L  LDLS N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 39/150 (26%)

Query: 668 LIGSGSFGSV--LHNERTGSW-------KSFIAECETLRNVR-HRNL---------VKLI 708
           +IG G+FG V  +  + TG         KS + E E + +VR  R++         VKL 
Sbjct: 8   VIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLY 67

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--DITS--------ALDYLHND 758
              S  D      L L+ E+L  G +   +   +K+    + T         A+D +H  
Sbjct: 68  --YSFQDENY---LYLIMEYLPGGDMMTLLM--KKDTFTEEETRFYIAETILAIDSIH-- 118

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
            ++  +H D+KP N+LLD +   K+ DFGL
Sbjct: 119 -KLGYIHRDIKPDNLLLDAKGHIKLSDFGL 147

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 723 ALVYEFLSNGSLGDWIHGERKNELD-ITSALDYLHNDCEVPVV-HSDLKPGNILLDEEMT 780
            L+ E++   +L +    E+++  + +   L  LH    + V+ H DL PGNIL+D+   
Sbjct: 69  YLLMEWIEGETLDEVSEEEKEDIAEQLAELLAKLH-QLPLLVLCHGDLHPGNILVDDGKI 127

Query: 781 AKVGDFGLARFLLERVD 797
             + D+  A +     D
Sbjct: 128 LGIIDWEYAGYGPPAFD 144

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. Length = 155

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 38/180 (21%)

Query: 669 IGSGSFGSVL--HNERTGSWK-------------SFIA-ECETLRNVRHRNLVKLITSCS 712
           +GSG++G V    N  TG                S I  E   ++  +H N+V    S  
Sbjct: 17  VGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYL 76

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELDIT-------SALDYLHNDCEVPVV 764
           S      E L +  E+   GSL D  H     +EL I          L YLH+  ++   
Sbjct: 77  S-----REKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKM--- 128

Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H D+K  NILL +    K+ DFG+A  +       ++I+    F+G+  ++ PE    E+
Sbjct: 129 HRDIKGANILLTDNGDVKLADFGVAAKI------TATIAKRKSFIGTPYWMAPEVAAVEK 182

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 40.4 bits (94), Expect = 0.004
 Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 35/175 (20%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF----IAECETLRNV------RHRNLVKLITS------- 710
           +IG G+FG V       S K +    +++ E ++          R+++    S       
Sbjct: 50  VIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLF 109

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHNDCEVPV 763
           C+  D K   +L +V E++  G L + +      E        ++  ALD +H+   + +
Sbjct: 110 CAFQDDK---YLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHS---MGL 163

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H D+KP N+LLD+    K+ DFG    +     +++ +      +G+  Y+ PE
Sbjct: 164 IHRDVKPDNMLLDKHGHLKLADFGTCMKM-----DETGMVRCDTAVGTPDYISPE 213

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 39/151 (25%)

Query: 669 IGSGSFGSVLHNE-RTGS------------------WKSFIAECETLRNVRHRNLVKLIT 709
           IG+G FG VL +E  T +                     F+ + +  R ++H N+++ + 
Sbjct: 3   IGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLG 62

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLG------DWIHGE------RKNELDITSALDYLHN 757
            C     + + +L LV+E+   G L        W          ++   +I + + ++H 
Sbjct: 63  QCV----EAIPYL-LVFEYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMH- 116

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
             +   +HSDL   N  L  ++T KVGD+G+
Sbjct: 117 --KHNFLHSDLALRNCFLTSDLTVKVGDYGI 145

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage spermatogenesis. Although it is classified as a tyr kinase based on sequence similarity and the phylogenetic tree, Aatyk2 has been characterized as a serine/threonine kinase. Length = 268

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 39.9 bits (93), Expect = 0.004
 Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 27/123 (21%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--- 745
           F+ E + +  ++  N+++L+  C + D      L ++ E++ NG L  ++      E   
Sbjct: 66  FLKEIKIMSRLKDPNIIRLLAVCITSDP-----LCMITEYMENGDLNQFLSRHEPQEAAE 120

Query: 746 ----------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
                             I S + YL +   +  VH DL   N L+ +  T K+ DFG++
Sbjct: 121 KADVVTISYSTLIFMATQIASGMKYLSS---LNFVHRDLATRNCLVGKNYTIKIADFGMS 177

Query: 790 RFL 792
           R L
Sbjct: 178 RNL 180

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 39.6 bits (92), Expect = 0.004
 Identities = 49/179 (27%), Positives = 77/179 (43%), Gaps = 43/179 (24%)

Query: 669 IGSGSFGSV-LHNERTGSWKSFIAECE-----------------TLRNVRHRNLVKLITS 710
           IG GSFG + L   ++ S    I E +                  L  ++H N+V   T 
Sbjct: 8   IGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIV---TF 64

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI---HGERKNE-------LDITSALDYLHNDCE 760
            +S       F+  V E+   G L   I    G   +E       + I+  L ++H+   
Sbjct: 65  FASFQENGRLFI--VMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR-- 120

Query: 761 VPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             ++H D+K  NI L +  M AK+GDFG+AR L    ++   ++ T V  G+  Y+ PE
Sbjct: 121 -KILHRDIKSQNIFLSKNGMVAKLGDFGIARQL----NDSMELAYTCV--GTPYYLSPE 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	929
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	100.0
KOG4721	904	consensus Serine/threonine protein kinase, contain	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	100.0
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.98
KOG3653	534	consensus Transforming growth factor beta/activin	99.98
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.98
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.98
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.98
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.97
KOG0589	426	consensus Serine/threonine protein kinase [General	99.97
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.97
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.97
PHA02988	283	hypothetical protein; Provisional	99.97
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.97
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.97
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.97
KOG0584	632	consensus Serine/threonine protein kinase [General	99.97
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.97
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.97
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.97
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.97
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.97
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.97
KOG0605	550	consensus NDR and related serine/threonine kinases	99.97
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.97
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.97
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.97
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.97
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.97
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.97
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.97
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.97
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.97
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.97
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.97
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.97
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.97
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.97
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.97
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.97
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.97
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.97
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.97
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.97
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
PHA03212	391	serine/threonine kinase US3; Provisional	99.97
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.97
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.97
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.97
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.97
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.97
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.97
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.97
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.97
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.97
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.96
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.96
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.96
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.96
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.96
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.96
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.96
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.96
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.96
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.96
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.96
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.96
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.96
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.96
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.96
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.96
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.96
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.96
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.96
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.96
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.96
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
PTZ00267	478	NIMA-related protein kinase; Provisional	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.96
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.96
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.96
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.96
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.96
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.96
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.96
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.96
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.96
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.96
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.96
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.96
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.96
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.96
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.96
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.96
PTZ00036	440	glycogen synthase kinase; Provisional	99.96
PTZ00283	496	serine/threonine protein kinase; Provisional	99.96
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.96
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.96
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.96
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.96
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.96
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.96
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.96
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.96
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.96
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.96
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.96
PHA03209	357	serine/threonine kinase US3; Provisional	99.96
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.96
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.96
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.96
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.96
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.96
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.96
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.96
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.96
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.96
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.96
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.96
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.96
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.96
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.96
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.96
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.96
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.96
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.96
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.96
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.96
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.96
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.96
PHA02882	294	putative serine/threonine kinase; Provisional	99.96
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.96
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.96
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.96
PHA03207	392	serine/threonine kinase US3; Provisional	99.96
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.95
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.95
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.95
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.95
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.95
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.95
PHA03210	501	serine/threonine kinase US3; Provisional	99.95
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.95
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.95
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.95
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.95
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.95
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.95
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.95
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.95
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.95
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.95
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.95
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.95
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.95
KOG0610	459	consensus Putative serine/threonine protein kinase	99.95
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.95
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
PTZ00284	467	protein kinase; Provisional	99.95
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.95
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.95
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.95
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.95
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.95
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.95
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.95
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.95
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.95
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.95
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.95
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.95
KOG0586	596	consensus Serine/threonine protein kinase [General	99.95
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.95
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.95
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.95
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.95
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.95
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.95
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.95
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.95
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.95
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.95
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.95
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.95
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.95
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.95
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.95
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.95
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.95
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.95
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.94
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.94
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.94
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.94
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.94
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.94
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.94
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.94
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.94
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.94
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.94
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.94
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.94
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.94
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.94
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.94
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.94
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.94
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.94
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.94
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.94
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.94
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.94
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.94
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.94
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.94
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.94
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.94
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.94
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.94
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.94
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.94
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.94
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.94
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.94
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.94
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.94
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.94
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.94
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.94
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.94
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.94
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.94
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.94
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.94
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.94
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.94
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.93
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.93
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.93
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.93
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.93
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.93
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.93
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.93
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.93
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.93
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.93
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.93
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.93
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.93
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.93
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.93
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.93
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.93
PLN00009	294	cyclin-dependent kinase A; Provisional	99.93
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.93
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.93
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.93
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.93
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.93
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.93
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.93
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.93
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.93
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.93
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.93
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.93
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.93
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.93
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.93
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.93
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.93
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.93
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.93
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.92
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.92
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.92
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.92
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.92
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.92
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.92
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.92
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.92
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.92
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.92
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.91
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.91
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.91
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.91
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.91
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.9
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.9
KOG1152	772	consensus Signal transduction serine/threonine kin	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.88
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.88
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.87
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.87
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.86
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.85
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.83
PRK09188	365	serine/threonine protein kinase; Provisional	99.83
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.8
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.78
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.78
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.72
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.71
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.71
PLN03150	623	hypothetical protein; Provisional	99.68
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.67
PRK12274	218	serine/threonine protein kinase; Provisional	99.65
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.65
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.63
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.63
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.61
PRK10345	210	hypothetical protein; Provisional	99.6
PLN03150	623	hypothetical protein; Provisional	99.55
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.55
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.54
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.54
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.54
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.5
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.49
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.48
PRK14879	211	serine/threonine protein kinase; Provisional	99.48
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.47
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.47
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.46
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.41
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.39
smart00090	237	RIO RIO-like kinase.	99.39
KOG1266	458	consensus Protein kinase [Signal transduction mech	99.38
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.33
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.31
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.29
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.28
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.26
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.2
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.11
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.06
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.99
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.97
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.96
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.96
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.91
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.79
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.72
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.67
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.64
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.59
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.57
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.56
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.52
KOG3087	229	consensus Serine/threonine protein kinase [General	98.48
KOG0606	1205	consensus Microtubule-associated serine/threonine	98.39
KOG1243	690	consensus Protein kinase [General function predict	98.3
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.28
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.24
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.09
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.07
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.04
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.02
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.92
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.88

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.1e-107  Score=1033.92  Aligned_cols=851  Identities=30%  Similarity=0.482  Sum_probs=611.2

Q ss_pred             ChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecC
Q 002376           26 INTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNN  105 (929)
Q Consensus        26 ~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N  105 (929)
                      .++|++||++||+++. + |.+.+.+|+.+.+||.|.||+|++. ++|+.|||++++++|.+++.+..+++|++|+|++|
T Consensus        27 ~~~~~~~l~~~~~~~~-~-~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSIN-D-PLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhCC-C-CcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            5799999999999985 3 6778899998889999999999874 59999999999999999999999999999999999


Q ss_pred             CCCCCCCcCCC-CCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCC
Q 002376          106 KLSGNLPREIG-NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSI  184 (929)
Q Consensus       106 ~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~  184 (929)
                      +++|.+|..+. .+++|++|+|++|++++.+|.  +.+++|++|+|++|.+++.+|.. ++++++|++|+|++|.+.+.+
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~  180 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKI  180 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccC
Confidence            99999998765 899999999999999887775  45778888888888887766665 788888888888888877766


Q ss_pred             Ccccccc----------------CCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCC
Q 002376          185 PPSIANL----------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTL  248 (929)
Q Consensus       185 p~~i~~l----------------~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l  248 (929)
                      |.++.++                +|..|+++++|+.|+|++|++++.+|..|.++++|++|+|++|++++.+|..+.. +
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l  259 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGN-L  259 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhC-C
Confidence            6544321                3445555666666666666666666666666666666666666666555555443 5


Q ss_pred             CCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCC
Q 002376          249 PNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNST  328 (929)
Q Consensus       249 ~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~  328 (929)
                      ++|+.|++++|++++.+|..+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+....       +..+..++
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-------~~~~~~l~  332 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-------PVALTSLP  332 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC-------ChhHhcCC
Confidence            66666666666666666666666666666666666666666666666666666666666554322       13455666


Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      +|+.|+|++|.+++.+|..++.+. +|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L  411 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRL  411 (968)
T ss_pred             CCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence            667777777777666666666655 5667777777666666666666666666666666666666666666666666666


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCc---------------ccCC
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI---------------LRPL  473 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~---------------~~~~  473 (929)
                      ++|++++.+|..|.++++|+.||+++|++++.+|..+..+++|+.|+|++|++.|.+|...               ....
T Consensus       412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence            6666666666666666666666666666666666666666666666666666655554321               1234


Q ss_pred             chhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCC
Q 002376          474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ  553 (929)
Q Consensus       474 p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  553 (929)
                      |..+..+++|+.|+|++|++++.+|..+.++++|++|+|++|+++|.+|..|..+++|+.|||++|+++|.+|..+.+++
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            77888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCCC------CCCCCCCCCCcceeehhhHHHHHHHHHHHHhhhh
Q 002376          554 ALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL------GCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWP  627 (929)
Q Consensus       554 ~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~------~c~~~~~~~~~~~~i~i~~~~~~~l~~~~~~~~~  627 (929)
                      +|+.|++++|+++|.+|..++|.++....+.||+.+|+.+      +|.... +...+..++++++ +++++++++++.+
T Consensus       572 ~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~  649 (968)
T PLN00113        572 SLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRVR-KTPSWWFYITCTL-GAFLVLALVAFGF  649 (968)
T ss_pred             ccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcccc-ccceeeeehhHHH-HHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999754      454321 1122222222222 2222222222222


Q ss_pred             hhhhcccccc-cccc---cccc------ccCCCCChHHHHHhhCCCCCceeecccCceeEEeccccCc------------
Q 002376          628 IIVRKRKAKR-VGVS---ALFK------VCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGS------------  685 (929)
Q Consensus       628 ~~~rrr~~~~-~~~~---~~~~------~~~~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~------------  685 (929)
                      +++++|+..+ ...+   ..+.      .....++++++.   +.|+..++||+|+||+||+|+....            
T Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~  726 (968)
T PLN00113        650 VFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDIL---SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDV  726 (968)
T ss_pred             HHHHhhhcccccccccccccccccccccccchhhhHHHHH---hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCC
Confidence            2223222111 1100   0010      001123444443   4577888999999999999986411            


Q ss_pred             HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccc-----cccccccHHHHHHHhhhCCC
Q 002376          686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCE  760 (929)
Q Consensus       686 ~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~-----~~~~~~~ia~aL~yLH~~~~  760 (929)
                      .....+|++.+++++|||||+++|+|.+.+     ..|+|||||++|+|.++++.     ...++.|||+||+|||+.+.
T Consensus       727 ~~~~~~~~~~l~~l~HpnIv~~~~~~~~~~-----~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~~~~  801 (968)
T PLN00113        727 NSIPSSEIADMGKLQHPNIVKLIGLCRSEK-----GAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHCRCS  801 (968)
T ss_pred             ccccHHHHHHHhhCCCCCcceEEEEEEcCC-----CCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCC
Confidence            112346799999999999999999996543     37999999999999999863     23457899999999998777


Q ss_pred             CCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCC
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGE  840 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~  840 (929)
                      ++|+|||+||+||++++++.+++. ||.+.....          .....||++|||||++.+..++.++||||+|+++||
T Consensus       802 ~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~----------~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~e  870 (968)
T PLN00113        802 PAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT----------DTKCFISSAYVAPETRETKDITEKSDIYGFGLILIE  870 (968)
T ss_pred             CCeecCCCCHHhEEECCCCceEEE-ecccccccc----------CCCccccccccCcccccCCCCCcccchhhHHHHHHH
Confidence            799999999999999999988886 666543211          112368899999999999999999999999999888


Q ss_pred             cchhHHhhhcCCc----------------hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHH
Q 002376          841 FNIVKWVESNLPE----------------NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIR  904 (929)
Q Consensus       841 ~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  904 (929)
                      +.....++.....                .....+|+.+...       .....+.+.++++ ++.+||+.||++||+|+
T Consensus       871 l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-l~~~Cl~~~P~~RPt~~  942 (968)
T PLN00113        871 LLTGKSPADAEFGVHGSIVEWARYCYSDCHLDMWIDPSIRGD-------VSVNQNEIVEVMN-LALHCTATDPTARPCAN  942 (968)
T ss_pred             HHhCCCCCCcccCCCCcHHHHHHHhcCccchhheeCccccCC-------CCccHHHHHHHHH-HHHhhCcCCchhCcCHH
Confidence            7665544321100                0111112211110       0011233445555 99999999999999999


Q ss_pred             HHHHHHHhhHHHHhhc
Q 002376          905 EALRRLKSSQEILLKQ  920 (929)
Q Consensus       905 ev~~~L~~~~~~~~~~  920 (929)
                      ||+++|+++.+.....
T Consensus       943 evl~~L~~~~~~~~~~  958 (968)
T PLN00113        943 DVLKTLESASRSSSSC  958 (968)
T ss_pred             HHHHHHHHhhcccccc
Confidence            9999999987755433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.1e-58  Score=584.23  Aligned_cols=485  Identities=33%  Similarity=0.513  Sum_probs=361.9

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccc-cccccceecccccccCCCCChhhhccCCCCcEE
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNIS-KLTELKMLDLMANKITGRVTDDQLRNLRSLQVL  173 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L  173 (929)
                      .+++.|||++|+++|.+|..|..+++|++|+|++|++++.+|..+. ++++|++|||++|+++|.+|.   +.+++|++|
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L  145 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETL  145 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEE
Confidence            3689999999999999999999999999999999999999997765 999999999999999988875   468999999


Q ss_pred             EccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcce
Q 002376          174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD  253 (929)
Q Consensus       174 ~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  253 (929)
                      +|++|.+++.+|..+.        .+++|++|+|++|.+.+..|..|.++++|++|+|++|++.+.+|..+.. +++|+.
T Consensus       146 ~Ls~n~~~~~~p~~~~--------~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~  216 (968)
T PLN00113        146 DLSNNMLSGEIPNDIG--------SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKW  216 (968)
T ss_pred             ECcCCcccccCChHHh--------cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccE
Confidence            9999999887775443        4455555555555555555555555555555555555555555544433 455555


Q ss_pred             eeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCC-----------------
Q 002376          254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDE-----------------  316 (929)
Q Consensus       254 l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~-----------------  316 (929)
                      |++++|++++.+|..+.++++|+.|++++|.+++.+|..|+++++|++|++++|++.......                 
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l  296 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL  296 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence            555555555555555555555555555555555555555555555555555555443211100                 


Q ss_pred             CCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCcc
Q 002376          317 GLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIE  396 (929)
Q Consensus       317 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  396 (929)
                      .-..+..+.++++|++|++++|.+++.+|..+..++ +|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..
T Consensus       297 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~  375 (968)
T PLN00113        297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG  375 (968)
T ss_pred             ccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence            000123455666777777777777766776666665 5777777777777777777777777777777777777777777


Q ss_pred             ccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCc-------
Q 002376          397 IGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI-------  469 (929)
Q Consensus       397 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~-------  469 (929)
                      +..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..|.++++|+.|++++|+++|.+|...       
T Consensus       376 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  455 (968)
T PLN00113        376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQ  455 (968)
T ss_pred             HhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCc
Confidence            7777777777777777777778888888888888888888888888888888888889999888888765421       


Q ss_pred             ---------ccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCc
Q 002376          470 ---------LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK  540 (929)
Q Consensus       470 ---------~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  540 (929)
                               ...+|..+ ..++|+.|||++|++++.+|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|+
T Consensus       456 ~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        456 MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence                     11233322 34678999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCcccccCCCCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCCCcCCC
Q 002376          541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       541 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      ++|.+|..+.++++|+.|+|++|+++|.+|.. ..+..++.+++++|+..+..|
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            99999999999999999999999999999975 457789999999999877443

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-45  Score=399.42  Aligned_cols=252  Identities=37%  Similarity=0.621  Sum_probs=203.7

Q ss_pred             cCCCCChHHHHHhhCCCCCceeecccCceeEEecccc--------------Cc-HHHHHHHHHHHHccCCccccceeeec
Q 002376          647 CHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERT--------------GS-WKSFIAECETLRNVRHRNLVKLITSC  711 (929)
Q Consensus       647 ~~~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~-~~~~~~E~~~l~~l~Hpniv~l~~~~  711 (929)
                      ....|+++|+++||++|+..+.||+|+||.||+|...              .. .++|.+|+.++.+++|||+|+++|||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            3456999999999999999999999999999998765              12 56799999999999999999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCce
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA  781 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~  781 (929)
                      .+.+.    ..+||||||++|+|.++++...          +++.++|+||+|||..+.++||||||||+|||+|+++++
T Consensus       141 ~e~~~----~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~a  216 (361)
T KOG1187|consen  141 LEGGE----HRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNA  216 (361)
T ss_pred             ecCCc----eEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCE
Confidence            76442    4799999999999999998544          568999999999999998999999999999999999999


Q ss_pred             EEeccccccccccccCCCCCcccccee-ccccccccccccCCCCCCCCCCCCCCcCCCCCcc----------------hh
Q 002376          782 KVGDFGLARFLLERVDNQSSISSTHVF-MGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFN----------------IV  844 (929)
Q Consensus       782 ki~DfGla~~~~~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~----------------~~  844 (929)
                      ||+|||+|+..+..      ....... .||.+|+|||++..+..+.|+||||||+++.|+.                +.
T Consensus       217 KlsDFGLa~~~~~~------~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~  290 (361)
T KOG1187|consen  217 KLSDFGLAKLGPEG------DTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLV  290 (361)
T ss_pred             EccCccCcccCCcc------ccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHH
Confidence            99999999765320      1111112 7999999999999999999999999998765532                44


Q ss_pred             HHhhhcCCc-hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          845 KWVESNLPE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       845 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .|+.....+ .+.+++|+.+...    .   ....+++.++++ +|.+|++.+|.+||+|.||+++|+.+...
T Consensus       291 ~w~~~~~~~~~~~eiiD~~l~~~----~---~~~~~~~~~~~~-~a~~C~~~~~~~RP~m~~Vv~~L~~~~~~  355 (361)
T KOG1187|consen  291 EWAKPLLEEGKLREIVDPRLKEG----E---YPDEKEVKKLAE-LALRCLRPDPKERPTMSQVVKELEGILSL  355 (361)
T ss_pred             HHHHHHHHCcchhheeCCCccCC----C---CChHHHHHHHHH-HHHHHcCcCCCcCcCHHHHHHHHHhhccc
Confidence            555444444 4666677766520    0   000135666777 99999999999999999999999665443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-42  Score=369.95  Aligned_cols=370  Identities=24%  Similarity=0.275  Sum_probs=303.3

Q ss_pred             ceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCC
Q 002376          146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTS  225 (929)
Q Consensus       146 ~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  225 (929)
                      ++||+|+|+++ .+....|.++++|+.+++.+|.++ .        +|..-....+|+.|+|.+|.|+.+..+.+..++.
T Consensus        81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~--------IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a  150 (873)
T KOG4194|consen   81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-R--------IPRFGHESGHLEKLDLRHNLISSVTSEELSALPA  150 (873)
T ss_pred             eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-h--------cccccccccceeEEeeeccccccccHHHHHhHhh
Confidence            45666666665 555555666666666666666652 2        2222233456888888888888888888888888


Q ss_pred             CceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccc
Q 002376          226 LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG  305 (929)
Q Consensus       226 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  305 (929)
                      |+.||||.|.|+ +||..-+..-.++++|+|++|+++...-+.|.++.+|..|.|++|+++...+..|++|++|+.|+|.
T Consensus       151 lrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn  229 (873)
T KOG4194|consen  151 LRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN  229 (873)
T ss_pred             hhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence            888888888887 7887777766788888888888888888899999999999999999997777889999999999999


Q ss_pred             cccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEee
Q 002376          306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLS  385 (929)
Q Consensus       306 ~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  385 (929)
                      .|+|.....       ..|.++++|+.|.|..|.+...-...|..+. ++++|+|+.|+++..-..++.++++|+.||||
T Consensus       230 rN~irive~-------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  230 RNRIRIVEG-------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             ccceeeehh-------hhhcCchhhhhhhhhhcCcccccCcceeeec-ccceeecccchhhhhhcccccccchhhhhccc
Confidence            999875422       3578889999999999999854444555555 79999999999998888999999999999999


Q ss_pred             CCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCC
Q 002376          386 YNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNI  465 (929)
Q Consensus       386 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i  465 (929)
                      +|.|..+.++.+...++|++|+|+.|+|+...+.+|..+..|+.|+|++|+++..-...|..+++|+.|||++|.|++.|
T Consensus       302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            99999888999999999999999999999999999999999999999999999888888999999999999999999877


Q ss_pred             CCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCc
Q 002376          466 PKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK  540 (929)
Q Consensus       466 ~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  540 (929)
                      ..+     ...|..++.|+.|+|.+|++....-.+|.++..|+.|||.+|.|..+-|++|..+ .|+.|.++.-.
T Consensus       382 EDa-----a~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSss  450 (873)
T KOG4194|consen  382 EDA-----AVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSS  450 (873)
T ss_pred             ecc-----hhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccc
Confidence            543     4456778888888888888886555788888888888888888888888888888 88888775543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.5e-45  Score=377.21  Aligned_cols=473  Identities=30%  Similarity=0.436  Sum_probs=280.6

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccc
Q 002376           73 VIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA  152 (929)
Q Consensus        73 v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  152 (929)
                      ...+++++|.++ .+.+.+.+|..|++|++++|+++ ..|++++.+..++.|+.|+|+++ .+|+.++.+.+|+.|+.++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            456778888887 66778888888888888888887 78888888888888888888888 7888888888888888888


Q ss_pred             cccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEee
Q 002376          153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLA  232 (929)
Q Consensus       153 N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  232 (929)
                      |.+. .++++ ++.+-.|+.|+..+|+++.         .|+++..+.+|..|++.+|++....|..+. ++.|++||..
T Consensus       124 n~~~-el~~~-i~~~~~l~dl~~~~N~i~s---------lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  124 NELK-ELPDS-IGRLLDLEDLDATNNQISS---------LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             ccee-ecCch-HHHHhhhhhhhcccccccc---------CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence            8887 67776 7888888888888887643         456667778888888888888855554444 8888888888


Q ss_pred             ecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCC
Q 002376          233 SNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS  312 (929)
Q Consensus       233 ~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~  312 (929)
                      +|.++ .+|.+++. +.+|..|++..|++.. .| +|.+++.|.+++++.|+|+-...+..++++++.+|||..|++++.
T Consensus       192 ~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~  267 (565)
T KOG0472|consen  192 SNLLE-TLPPELGG-LESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEV  267 (565)
T ss_pred             hhhhh-cCChhhcc-hhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccC
Confidence            88876 77777766 7777777777777763 44 677777777777777777733333345777777777777777766


Q ss_pred             CCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCC-----CCcccE----EE
Q 002376          313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR-----LRSLTL----LD  383 (929)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~----L~  383 (929)
                      ++        .+.-+.+|++||+|+|.|+ .+|.+++++  .|+.|-+.+|.+...-.+.+.+     ++.|+.    =-
T Consensus       268 Pd--------e~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  268 PD--------EICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             ch--------HHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence            54        3455667777777777777 566677766  4777777777664211100000     000000    00


Q ss_pred             eeCCCC----CcccC----ccccCCCCCCEEEecCCcCCCCCcccccCCCC---CceecccCcccccccCcccccccccc
Q 002376          384 LSYNSI----SGEIP----IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKK---LNQIDLSGNELTGEIPISFGNFQSLL  452 (929)
Q Consensus       384 Ls~N~l----~~~~p----~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~~~~l~~L~  452 (929)
                      +|.-+=    .+..|    .....+.+.+.|++++-+++. +|+......+   ....+++.|++. ++|..+..+..+.
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelv  414 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELV  414 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHH
Confidence            000000    00000    011123334445555555542 2222222111   444455555554 3444444443332


Q ss_pred             e-ecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCC
Q 002376          453 S-IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL  531 (929)
Q Consensus       453 ~-L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  531 (929)
                      + +.+++|.++ .+        |..++.+++|+.|+|++|-+. .+|..++.+..|+.||+|+|+|. .+|..+-.+..|
T Consensus       415 T~l~lsnn~is-fv--------~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l  483 (565)
T KOG0472|consen  415 TDLVLSNNKIS-FV--------PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL  483 (565)
T ss_pred             HHHHhhcCccc-cc--------hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence            2 233333332 22        444444555555555544443 34444555555555555555444 344444444444


Q ss_pred             CEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 002376          532 EVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPK  588 (929)
Q Consensus       532 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~  588 (929)
                      +.+-.++|++....|+.+.+|.+|..|||.+|.+...+|..+.+.++..+.+.|||+
T Consensus       484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             HHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCcc
Confidence            444444455543333344455555555555555554444444445555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.1e-43  Score=363.01  Aligned_cols=456  Identities=27%  Similarity=0.400  Sum_probs=328.3

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEE
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLN  174 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~  174 (929)
                      .-|+.|++++|.+. .+-+.+.+|..|.+|++.+|+++ ..|.+++.+..++.|+.|+|+++ .+|++ ++.+.+|..|+
T Consensus        45 v~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~-i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQ-IGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHH-Hhhhhhhhhhh
Confidence            35788999999998 66667888999999999999999 78888999999999999999998 78877 89999999999


Q ss_pred             ccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCccee
Q 002376          175 FGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF  254 (929)
Q Consensus       175 Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l  254 (929)
                      .++|.+..         .|++++.+..|+.|+..+|+++ ..|+.++++.+|..|++.+|++. .+|.+..+ ++.|+.+
T Consensus       121 ~s~n~~~e---------l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~l  188 (565)
T KOG0472|consen  121 CSSNELKE---------LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHL  188 (565)
T ss_pred             ccccceee---------cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhc
Confidence            99998732         4556777888999999999998 67788888889999999999887 55555544 6667777


Q ss_pred             eccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEE
Q 002376          255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLA  334 (929)
Q Consensus       255 ~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~  334 (929)
                      +...|-++ .+|..++.+.+|+.|+|.+|+|. .+| .|..+..|+.|+++.|+|...++       ....+++++.+||
T Consensus       189 d~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa-------e~~~~L~~l~vLD  258 (565)
T KOG0472|consen  189 DCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA-------EHLKHLNSLLVLD  258 (565)
T ss_pred             ccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH-------HHhcccccceeee
Confidence            76666654 46666666777777777777766 444 66666666666666666655543       2233566666666


Q ss_pred             ccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccC-----CCCCCE----
Q 002376          335 LDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQ-----LQGLQV----  405 (929)
Q Consensus       335 Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~----  405 (929)
                      |.+|+++ ..|+.+..+. +|..||+|+|.|++ .|.+++++ .|+.|-+.+|.+..+-.+.+..     ++.|+.    
T Consensus       259 LRdNklk-e~Pde~clLr-sL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~  334 (565)
T KOG0472|consen  259 LRDNKLK-EVPDEICLLR-SLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKD  334 (565)
T ss_pred             ccccccc-cCchHHHHhh-hhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhcc
Confidence            6666666 5666666554 56666666666663 45556666 6666666666654211110000     001110    


Q ss_pred             EEecCCc----CCCC-Ccc---cccCCCCCceecccCcccccccCcccccccc---cceecccCCcCCCCCCCCcccCCc
Q 002376          406 LGLAGNE----IPGG-IPN---SLANLKKLNQIDLSGNELTGEIPISFGNFQS---LLSIDLSNNRINGNIPKGILRPLP  474 (929)
Q Consensus       406 L~L~~N~----l~~~-~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~g~i~~~~~~~~p  474 (929)
                      =.++.-+    =.+. .+.   ....+.+.+.|++++-+++ .+|........   .+..+++.|++. .+        |
T Consensus       335 dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-el--------P  404 (565)
T KOG0472|consen  335 DGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-EL--------P  404 (565)
T ss_pred             CCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hh--------h
Confidence            0000000    0000 111   1233457889999999998 56655433333   788999999996 34        6


Q ss_pred             hhhhcccCccE-EEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCC
Q 002376          475 EEISRLENVVT-IDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ  553 (929)
Q Consensus       475 ~~~~~l~~L~~-LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  553 (929)
                      ..+..++.+++ +++++|.++ .+|..+..+++|..|+|++|-+. .+|..++.+..|+.||+|.|+|. .+|..+..+.
T Consensus       405 k~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq  481 (565)
T KOG0472|consen  405 KRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQ  481 (565)
T ss_pred             hhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHH
Confidence            66666655544 566666665 88999999999999999999987 78999999999999999999998 7899888888


Q ss_pred             CCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCCCcCCC
Q 002376          554 ALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       554 ~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      .|+.+-.++|++..+.|++ ..++++..+++.+|...-.+|
T Consensus       482 ~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp  522 (565)
T KOG0472|consen  482 TLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP  522 (565)
T ss_pred             HHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence            8888888889999888874 568999999999998766555

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=1.7e-40  Score=362.29  Aligned_cols=232  Identities=28%  Similarity=0.417  Sum_probs=181.0

Q ss_pred             ceeecccCceeEEeccccCc-----------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          666 ENLIGSGSFGSVLHNERTGS-----------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~~-----------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .+.||+|+||+||+|.+.+.                 .++|.+|+.+|++++|||||+++|+|.+...    ..++||||
T Consensus        46 ~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~----~~~iVtEy  121 (362)
T KOG0192|consen   46 EEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPG----SLCIVTEY  121 (362)
T ss_pred             hhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC----ceEEEEEe
Confidence            35599999999999988732                 3489999999999999999999999975431    37999999


Q ss_pred             cCCCCcccccccc--c--------cccccHHHHHHHhhhCCCCC-EEecCCCCCCeeecCCC-ceEEecccccccccccc
Q 002376          729 LSNGSLGDWIHGE--R--------KNELDITSALDYLHNDCEVP-VVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~~~--~--------~~~~~ia~aL~yLH~~~~~~-iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~~~~  796 (929)
                      |++|+|.++++..  +        .++.|||+||.|||+.   + ||||||||+|||++.++ ++||+|||+++......
T Consensus       122 ~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~  198 (362)
T KOG0192|consen  122 MPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSE---GPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK  198 (362)
T ss_pred             CCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeecccChhhEEEcCCCCEEEECCCccceeecccc
Confidence            9999999999762  2        3378999999999998   5 99999999999999998 99999999998753211


Q ss_pred             CCCCCccccceeccccccccccccC--CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGL--GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                            ...+...||+.|||||++.  ...|+.|+||||||+++||+.+...++.....  .++...-...      ..+
T Consensus       199 ------~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~--~~~~~~v~~~------~~R  264 (362)
T KOG0192|consen  199 ------TSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELLTGEIPFEDLAP--VQVASAVVVG------GLR  264 (362)
T ss_pred             ------ccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhc------CCC
Confidence                  2233368999999999999  56899999999999888887776666555543  1111111111      111


Q ss_pred             hhhhH-HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          875 IQLHD-CLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       875 ~~~~~-~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      +..+. |...+.. ++.+||+.||++||++.|++.+|+.+...+..
T Consensus       265 p~~p~~~~~~l~~-l~~~CW~~dp~~RP~f~ei~~~l~~~~~~~~~  309 (362)
T KOG0192|consen  265 PPIPKECPPHLSS-LMERCWLVDPSRRPSFLEIVSRLESIMSHISS  309 (362)
T ss_pred             CCCCccCCHHHHH-HHHHhCCCCCCcCCCHHHHHHHHHHHHHhhcc
Confidence            22111 3333444 77799999999999999999999999887664

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=9e-41  Score=357.78  Aligned_cols=366  Identities=25%  Similarity=0.307  Sum_probs=288.7

Q ss_pred             CCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEcc
Q 002376           97 LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG  176 (929)
Q Consensus        97 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls  176 (929)
                      -+.|||++|+++..-+..|.++++|+.++|.+|.++ .||.......+|+.|+|.+|.|+ .+..+.+..++.|+.||||
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence            367888888888778888888888888888888888 77876666667888888888887 6777778888888888888


Q ss_pred             ccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeec
Q 002376          177 KNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY  256 (929)
Q Consensus       177 ~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l  256 (929)
                      .|.++.        +--..|..-.++++|+|++|+|+....+.|.++.+|.+|.|+.|+|+ .+|...|+.+++|+.|+|
T Consensus       158 rN~is~--------i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL  228 (873)
T KOG4194|consen  158 RNLISE--------IPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL  228 (873)
T ss_pred             hchhhc--------ccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence            887743        22234555667888888888888888888888888888888888888 788888888888888888


Q ss_pred             cCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEcc
Q 002376          257 CFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD  336 (929)
Q Consensus       257 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls  336 (929)
                      ..|++.-..--.|.+|.+|+.|.|..|.+...-...|..|.++++|+|++|++..+..       ..+.+++.|+.|+||
T Consensus       229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-------g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-------GWLFGLTSLEQLDLS  301 (873)
T ss_pred             cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-------ccccccchhhhhccc
Confidence            8888876556678888888888888888887777788888888888888888877654       456778888888888


Q ss_pred             CCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCC
Q 002376          337 GNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGG  416 (929)
Q Consensus       337 ~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  416 (929)
                      +|.|...-+++.. +..+|++|+|++|+|+...+.+|..++.|++|+|++|++...--..|..+.+|+.|||++|.|+..
T Consensus       302 ~NaI~rih~d~Ws-ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~  380 (873)
T KOG4194|consen  302 YNAIQRIHIDSWS-FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWC  380 (873)
T ss_pred             hhhhheeecchhh-hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEE
Confidence            8888855555544 344788888888888888888888888888888888888877677788888888888888888765


Q ss_pred             Ccc---cccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecC
Q 002376          417 IPN---SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD  490 (929)
Q Consensus       417 ~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~  490 (929)
                      +.+   .|.++++|+.|+|.+|+|..+.-.+|.++.+|+.|||.+|.|.. |.       |..|..+ .|+.|-++.
T Consensus       381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS-Iq-------~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS-IQ-------PNAFEPM-ELKELVMNS  448 (873)
T ss_pred             EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee-ec-------ccccccc-hhhhhhhcc
Confidence            543   57788888888888888887666788888888888888888863 32       4445554 566655543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-40  Score=342.45  Aligned_cols=232  Identities=24%  Similarity=0.367  Sum_probs=177.5

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecc
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCS  712 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~  712 (929)
                      .++.+|+++       .+.||+|..|+|||++++.                 ..+++.+|++++++++||+||+++|.|+
T Consensus        75 ~i~~~dle~-------~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   75 GISLSDLER-------LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             ccCHHHhhh-------hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            466677765       4789999999999998872                 2578899999999999999999999997


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      ....    .++++||||++|||+++++...        .++.+|++||.|||+.  ..||||||||+|||++..|++|||
T Consensus       148 ~~~~----~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~--~~IIHRDIKPsNlLvNskGeVKic  221 (364)
T KOG0581|consen  148 SNGE----EISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEE--RKIIHRDIKPSNLLVNSKGEVKIC  221 (364)
T ss_pred             eCCc----eEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhc--cCeeeccCCHHHeeeccCCCEEec
Confidence            6431    4899999999999999987533        3477899999999973  289999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhccCh
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVLDP  861 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~~~  861 (929)
                      |||.++.+..        +....++||..|||||-+.+..|+.++||||+|+.+.|+.+++++.....+   .+.+.++.
T Consensus       222 DFGVS~~lvn--------S~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~  293 (364)
T KOG0581|consen  222 DFGVSGILVN--------SIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCA  293 (364)
T ss_pred             cccccHHhhh--------hhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHH
Confidence            9999997632        134567999999999999999999999999999776666666555443211   22222222


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      -..     ++.++.+...+-.++ ++++.+|++.||.+||+++|+++
T Consensus       294 Iv~-----~ppP~lP~~~fS~ef-~~FV~~CL~Kdp~~R~s~~qLl~  334 (364)
T KOG0581|consen  294 IVD-----EPPPRLPEGEFSPEF-RSFVSCCLRKDPSERPSAKQLLQ  334 (364)
T ss_pred             Hhc-----CCCCCCCcccCCHHH-HHHHHHHhcCCcccCCCHHHHhc
Confidence            222     121111111122222 33677999999999999999874

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=8.9e-39  Score=346.00  Aligned_cols=232  Identities=25%  Similarity=0.358  Sum_probs=177.3

Q ss_pred             CCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          664 SHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      +..+.||+|-||+||.|++.+              ..++|.+|+++|.+++|++||+++|+|...++     +|||||||
T Consensus       209 ~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~p-----iyIVtE~m  283 (468)
T KOG0197|consen  209 KLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEP-----IYIVTEYM  283 (468)
T ss_pred             HHHHHhcCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEEEEEecCCc-----eEEEEEec
Confidence            345789999999999998873              24689999999999999999999999976443     89999999


Q ss_pred             CCCCcccccccc-c---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          730 SNGSLGDWIHGE-R---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       730 ~~gsL~~~l~~~-~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      +.|+|.+||+.. +         .++.|||+||+||+++   ++|||||.++||||+++..|||+|||+||....+.-  
T Consensus       284 ~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y--  358 (468)
T KOG0197|consen  284 PKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESK---NYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEY--  358 (468)
T ss_pred             ccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhC---CccchhhhhhheeeccCceEEEcccccccccCCCce--
Confidence            999999999852 2         2367999999999998   999999999999999999999999999995432111  


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                         .......-...|.|||.+..++++.|+||||||++++|+.+.    +..|.  .+....++...+...... +....
T Consensus       359 ---~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~----G~~py--~~msn~ev~~~le~GyRl-p~P~~  428 (468)
T KOG0197|consen  359 ---TASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTY----GRVPY--PGMSNEEVLELLERGYRL-PRPEG  428 (468)
T ss_pred             ---eecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhcc----CCCCC--CCCCHHHHHHHHhccCcC-CCCCC
Confidence               111112236689999999999999999999999999996544    33331  111112222222211111 11123


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      |...+.+ ||..||+.+|++|||++.+...++++...
T Consensus       429 CP~~vY~-lM~~CW~~~P~~RPtF~~L~~~l~~~~~~  464 (468)
T KOG0197|consen  429 CPDEVYE-LMKSCWHEDPEDRPTFETLREVLEDFFTS  464 (468)
T ss_pred             CCHHHHH-HHHHHhhCCcccCCCHHHHHHHHHHhhhc
Confidence            5556666 99999999999999999999988887654

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=9.6e-38  Score=323.88  Aligned_cols=226  Identities=23%  Similarity=0.219  Sum_probs=170.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      +.|...+.+|+|+||.|-+|..+.                       ......+|+++|++++|||||++++++...+  
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d--  249 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD--  249 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC--
Confidence            467778999999999997765441                       1123469999999999999999999996544  


Q ss_pred             CcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEEecc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDF  786 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki~Df  786 (929)
                         +.|||||||+||+|.+++-..        +.+..|++.|+.|||++   ||+||||||+|||+..+   ..+||+||
T Consensus       250 ---s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~---GI~HRDiKPeNILl~~~~e~~llKItDF  323 (475)
T KOG0615|consen  250 ---SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQ---GIIHRDIKPENILLSNDAEDCLLKITDF  323 (475)
T ss_pred             ---ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHc---CcccccCCcceEEeccCCcceEEEeccc
Confidence               379999999999999987532        23478999999999998   99999999999999755   78999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC---CCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccCh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER---PSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDP  861 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~  861 (929)
                      |+|+...       ....+..+|||+.|.|||++.++.   +..++|+||+||++|-+..+..++.....  ...+.+  
T Consensus       324 GlAK~~g-------~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI--  394 (475)
T KOG0615|consen  324 GLAKVSG-------EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQI--  394 (475)
T ss_pred             chhhccc-------cceehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHH--
Confidence            9999763       234456789999999999998775   34578999999998887666555543221  122111  


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ..+.+    ...+..+..+.+-..+++.+++..||++|||++|+++
T Consensus       395 -~~G~y----~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~  436 (475)
T KOG0615|consen  395 -LKGRY----AFGPLQWDRISEEALDLINWMLVVDPENRPSADEALN  436 (475)
T ss_pred             -hcCcc----cccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhc
Confidence             11111    1222333444444445888999999999999999985

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-38  Score=355.95  Aligned_cols=237  Identities=24%  Similarity=0.392  Sum_probs=182.4

Q ss_pred             CCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +....+.||+|+||+||+|+..                      +..++|.+|+++++.++|||||+++|+|...++   
T Consensus       487 ~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P---  563 (774)
T KOG1026|consen  487 DIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDP---  563 (774)
T ss_pred             heeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCe---
Confidence            4455688999999999998765                      135789999999999999999999999987665   


Q ss_pred             ceEEEEEEecCCCCcccccccc----------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE----------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE  777 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~----------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~  777 (929)
                        .+||+|||..|||.+||+.+                      ..++.|||.||+||-++   .+|||||.++|+||.+
T Consensus       564 --~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHRDLATRNCLVge  638 (774)
T KOG1026|consen  564 --LCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHRDLATRNCLVGE  638 (774)
T ss_pred             --eEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---cccccchhhhhceecc
Confidence              89999999999999999721                      12467999999999998   7999999999999999


Q ss_pred             CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          778 EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       778 ~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      +..|||+|||++|.+...+-    ........-..+|||||.+..++||+++||||+|+++||+..+    +..|  ..+
T Consensus       639 ~l~VKIsDfGLsRdiYssDY----Yk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEIFsy----G~QP--y~g  708 (774)
T KOG1026|consen  639 NLVVKISDFGLSRDIYSSDY----YKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEIFSY----GKQP--YYG  708 (774)
T ss_pred             ceEEEecccccchhhhhhhh----hcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhhhcc----ccCc--ccc
Confidence            99999999999996532110    0011122346799999999999999999999999999985322    2112  222


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .-+.++.+......- -.....|..++.+ ||..||+.+|++||+++||-.+|+...+..+
T Consensus       709 lSn~EVIe~i~~g~l-L~~Pe~CP~~vY~-LM~~CW~~~P~~RPsF~eI~~~L~~~~~~s~  767 (774)
T KOG1026|consen  709 LSNQEVIECIRAGQL-LSCPENCPTEVYS-LMLECWNENPKRRPSFKEIHSRLQAWAQASP  767 (774)
T ss_pred             cchHHHHHHHHcCCc-ccCCCCCCHHHHH-HHHHHhhcCcccCCCHHHHHHHHHHHHhcCc
Confidence            223333332222211 1122256677777 9999999999999999999999999877644

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.3e-39  Score=319.44  Aligned_cols=230  Identities=24%  Similarity=0.322  Sum_probs=170.0

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|.+.++||+|.||+|||+.+.                  +..++...|+.+|++++|||||++++.-..   +..+.++
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~---~~~evln   96 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFI---EDNEVLN   96 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhh---ccchhhH
Confidence            4666789999999999998765                  234567799999999999999999985433   2334589


Q ss_pred             EEEEecCCCCcccccccc----c--------cccccHHHHHHHhhhCCCCC--EEecCCCCCCeeecCCCceEEeccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE----R--------KNELDITSALDYLHNDCEVP--VVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~----~--------~~~~~ia~aL~yLH~~~~~~--iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      +|||||+.|+|..+++..    +        ++..|+++||.++|... +.  |+||||||.||+++.+|.+|++|||++
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~-~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~  175 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKI-PRGTVMHRDIKPANIFLTANGVVKLGDFGLG  175 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccc-cccceeeccCcchheEEcCCCceeeccchhH
Confidence            999999999999988622    1        23579999999999942 24  999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      |.+..      ........+|||.||+||.+.+.+|+.|+||||+||++|||....-++..-  ...+     +...+..
T Consensus       176 r~l~s------~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~--n~~~-----L~~KI~q  242 (375)
T KOG0591|consen  176 RFLSS------KTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGD--NLLS-----LCKKIEQ  242 (375)
T ss_pred             hHhcc------hhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccc--cHHH-----HHHHHHc
Confidence            98742      233456679999999999999999999999999999988875544333211  1111     1111111


Q ss_pred             cchhhhhhh-HHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          870 NESQTIQLH-DCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       870 ~~~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      ..-  ++.+ +..++-+..|+..|++.||+.||+....++.+
T Consensus       243 gd~--~~~p~~~YS~~l~~li~~ci~vd~~~RP~t~~~v~di  282 (375)
T KOG0591|consen  243 GDY--PPLPDEHYSTDLRELINMCIAVDPEQRPDTVPYVQDI  282 (375)
T ss_pred             CCC--CCCcHHHhhhHHHHHHHHHccCCcccCCCcchHHHHH
Confidence            111  0111 23344444577799999999999854444333

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=7.4e-38  Score=325.68  Aligned_cols=175  Identities=30%  Similarity=0.471  Sum_probs=149.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|...+.||+|+||+||+|+++.                  ..+....|+.+|+.++|||||++++++...     .+
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~-----~~   83 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDD-----DF   83 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecC-----Ce
Confidence            4678888899999999999998872                  234567899999999999999999999554     45


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC------CceEEeccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE------MTAKVGDFG  787 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~------~~~ki~DfG  787 (929)
                      +|+|||||.+|||.+|++.++        .+..|+|.||++||++   +||||||||.||||+..      -.+||+|||
T Consensus        84 i~lVMEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~---~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFG  160 (429)
T KOG0595|consen   84 IYLVMEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHEN---NIIHRDLKPQNILLSTTARNDTSPVLKIADFG  160 (429)
T ss_pred             EEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCcceEEeccCCCCCCCceEEecccc
Confidence            999999999999999998553        4478999999999998   99999999999999764      468999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhh
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVES  849 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~  849 (929)
                      +||.+.+.       ......+|++.|||||+++...|+.|+|+||.|+++|++..+.-++.
T Consensus       161 fAR~L~~~-------~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~  215 (429)
T KOG0595|consen  161 FARFLQPG-------SMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD  215 (429)
T ss_pred             hhhhCCch-------hHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence            99987522       23455799999999999999999999999999988888766555443

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.4e-37  Score=337.51  Aligned_cols=224  Identities=22%  Similarity=0.287  Sum_probs=177.5

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ..|...+.||+|||+.||+++..                   +..+...+||++.+.++|||||+++++|.+     ..+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FED-----s~n   92 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFED-----SNN   92 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeec-----CCc
Confidence            57999999999999999998873                   345678899999999999999999999944     455


Q ss_pred             EEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+|.|+|++|+|..+++.+        |.+..||+.||.|||+.   +|||||||-.|+++++++++||+|||+|..+.
T Consensus        93 VYivLELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~---~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le  169 (592)
T KOG0575|consen   93 VYIVLELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSL---GIIHRDLKLGNLFLNENMNVKIGDFGLATQLE  169 (592)
T ss_pred             eEEEEEecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhc---CceecccchhheeecCcCcEEecccceeeeec
Confidence            99999999999999998732        34578999999999998   99999999999999999999999999999874


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      .......+|||-|+|||++....++..+||||.||++|.+.++.-++..-  .+.+..        ..-...
T Consensus       170 ~~------~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk--~vkety--------~~Ik~~  233 (592)
T KOG0575|consen  170 YD------GERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETK--TVKETY--------NKIKLN  233 (592)
T ss_pred             Cc------ccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccc--hHHHHH--------HHHHhc
Confidence            32      12345679999999999999999999999999999888765544333221  121111        111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....+..++.-.++|+.+.+++||.+|||+++|+.
T Consensus       234 ~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~  268 (592)
T KOG0575|consen  234 EYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLD  268 (592)
T ss_pred             CcccccccCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            12222234444455888999999999999999974

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=100.00  E-value=8.7e-37  Score=330.89  Aligned_cols=247  Identities=24%  Similarity=0.305  Sum_probs=187.4

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccCc---------------HHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTGS---------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++++...+.+.....||+|+||+||+|++.++               .+.|++|+.++++-+|.||+-+.|||..+.   
T Consensus       385 ~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~---  461 (678)
T KOG0193|consen  385 EEWEIPPEEVLLGERIGSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPP---  461 (678)
T ss_pred             cccccCHHHhhccceeccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCc---
Confidence            45555555666778999999999999999843               578999999999999999999999996433   


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                         ..+|+.+|+|-+|+.++|..+         .++.|||+||.|||.+   +|||||+|+.||++.++++|||+|||++
T Consensus       462 ---~AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK---~IIHrDLKSnNIFl~~~~kVkIgDFGLa  535 (678)
T KOG0193|consen  462 ---LAIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAK---NIIHRDLKSNNIFLHEDLKVKIGDFGLA  535 (678)
T ss_pred             ---eeeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhh---hhhhhhccccceEEccCCcEEEecccce
Confidence               499999999999999998433         4588999999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      ..-.....    ......-.|...|||||+++..   +|++.+|||+||+++||+...+|++. .... .+++=.--++.
T Consensus       536 tvk~~w~g----~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPys-i~~~-dqIifmVGrG~  609 (678)
T KOG0193|consen  536 TVKTRWSG----EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYS-IQNR-DQIIFMVGRGY  609 (678)
T ss_pred             eeeeeecc----ccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcC-CCCh-hheEEEecccc
Confidence            75432211    1112233578899999998743   69999999999999999998888877 2211 11110001111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      +..+.  ......|..++ ++|+..||..+|++||.+.+++.+|+++....+
T Consensus       610 l~pd~--s~~~s~~pk~m-k~Ll~~C~~~~~~eRP~F~~il~~l~~l~~~~p  658 (678)
T KOG0193|consen  610 LMPDL--SKIRSNCPKAM-KRLLSDCWKFDREERPLFPQLLSKLEELLPSLP  658 (678)
T ss_pred             cCccc--hhhhccCHHHH-HHHHHHHHhcCcccCccHHHHHHHHHHhhhccc
Confidence            11110  11112233333 337779999999999999999999999888654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.6e-38  Score=356.84  Aligned_cols=465  Identities=28%  Similarity=0.384  Sum_probs=284.7

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccc
Q 002376           73 VIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA  152 (929)
Q Consensus        73 v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  152 (929)
                      ++.|++..|-+-...-+.+..--+|+.|||++|++. ..|..+..+.+|+.|+++.|.|. ..|.+.+++.+|++|.|.+
T Consensus        23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~  100 (1081)
T KOG0618|consen   23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKN  100 (1081)
T ss_pred             HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheecc
Confidence            455555555433111111222233777777777765 66667777777777777777776 5666667777777777777


Q ss_pred             cccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEee
Q 002376          153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLA  232 (929)
Q Consensus       153 N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  232 (929)
                      |++. ..|.+ +..+.+|++|++|.|++. .        +|.-+..++.+..++.++|......+    .+. ++.++|.
T Consensus       101 n~l~-~lP~~-~~~lknl~~LdlS~N~f~-~--------~Pl~i~~lt~~~~~~~s~N~~~~~lg----~~~-ik~~~l~  164 (1081)
T KOG0618|consen  101 NRLQ-SLPAS-ISELKNLQYLDLSFNHFG-P--------IPLVIEVLTAEEELAASNNEKIQRLG----QTS-IKKLDLR  164 (1081)
T ss_pred             chhh-cCchh-HHhhhcccccccchhccC-C--------CchhHHhhhHHHHHhhhcchhhhhhc----ccc-chhhhhh
Confidence            7765 45554 677777777777777652 2        33344456666666666662211121    111 6667777


Q ss_pred             ecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCC
Q 002376          233 SNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS  312 (929)
Q Consensus       233 ~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~  312 (929)
                      .|.+.+.++.++.. +.+  .++|++|++.   -..+.++.+|+.|....|+++...    -..++|+.|+.++|.+...
T Consensus       165 ~n~l~~~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  165 LNVLGGSFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             hhhcccchhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee
Confidence            77776666655443 332  4677777665   234556667777777777766332    2345677777777777633


Q ss_pred             CCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcc
Q 002376          313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE  392 (929)
Q Consensus       313 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  392 (929)
                      ..         -..-.+|+++++++|+++ .+|++++.+. +|+.++..+|+|+ .+|..+....+|+.|+..+|.++ -
T Consensus       235 ~~---------~p~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-y  301 (1081)
T KOG0618|consen  235 DV---------HPVPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-Y  301 (1081)
T ss_pred             cc---------ccccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-h
Confidence            21         122357788888888887 5667777777 6888888888884 56777777778888888888887 5


Q ss_pred             cCccccCCCCCCEEEecCCcCCCCCcccccCCCC-CceecccCcccccccCcccccccccceecccCCcCCCCCCCCccc
Q 002376          393 IPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKK-LNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR  471 (929)
Q Consensus       393 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~  471 (929)
                      +|....++++|++|+|..|+|...++..|.-+.. |..|+.+.|++.......=..+..|+.|++.+|.++...      
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c------  375 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC------  375 (1081)
T ss_pred             CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc------
Confidence            5666777888888888888887544433333332 555666666665322111123455666666666666432      


Q ss_pred             CCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCccccc
Q 002376          472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQN  551 (929)
Q Consensus       472 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  551 (929)
                        -.-+.+...|+.|+|++|+|.......+.++..|++|+||+|+++ .+|..+..++.|++|..-+|+|. ..| .+..
T Consensus       376 --~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~  450 (1081)
T KOG0618|consen  376 --FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ  450 (1081)
T ss_pred             --hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence              123455566777777777766444445666667777777777776 45566666777777777777766 455 5666


Q ss_pred             CCCCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCCC
Q 002376          552 LQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPKL  589 (929)
Q Consensus       552 l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~~  589 (929)
                      ++.|+.+|+|.|+|+-..-.. ...++|+.++++||+++
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence            677777777777766443222 22266677777777643

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=100.00  E-value=2.9e-36  Score=333.75  Aligned_cols=236  Identities=22%  Similarity=0.311  Sum_probs=181.4

Q ss_pred             CCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          663 FSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .+++++||.|.||+||+|+.+                    +.+.+|..|+.+|.+++||||++|.|+.....+     +
T Consensus       631 i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~P-----v  705 (996)
T KOG0196|consen  631 VKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKP-----V  705 (996)
T ss_pred             eEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCce-----e
Confidence            346689999999999999876                    346789999999999999999999999865443     8


Q ss_pred             EEEEEecCCCCccccccccccc---------cccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~~~---------~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++|.|||++|+|+.||++.-..         ..+||.||.||-+.   ++|||||.++|||++.+..+||+|||++|.+.
T Consensus       706 MIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm---~YVHRDLAARNILVNsnLvCKVsDFGLSRvle  782 (996)
T KOG0196|consen  706 MIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVLE  782 (996)
T ss_pred             EEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhc---CchhhhhhhhheeeccceEEEeccccceeecc
Confidence            9999999999999999854321         45799999999987   99999999999999999999999999999875


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ++.   .....+..-.-..+|.|||.+..++++.++||||+|+++||+..    ++..|-  .++-.+++...+..+- .
T Consensus       783 dd~---~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmS----yGERPY--WdmSNQdVIkaIe~gy-R  852 (996)
T KOG0196|consen  783 DDP---EAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS----YGERPY--WDMSNQDVIKAIEQGY-R  852 (996)
T ss_pred             cCC---CccccccCCccceeecChhHhhhcccCchhhccccceEEEEecc----cCCCcc--cccchHHHHHHHHhcc-C
Confidence            331   11122222233578999999999999999999999999888432    222221  1222222222111111 1


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      -++..+|...+.+ ||..||+.|-.+||++.+++..|+++.+.-
T Consensus       853 LPpPmDCP~aL~q-LMldCWqkdR~~RP~F~qiV~~lDklIrnP  895 (996)
T KOG0196|consen  853 LPPPMDCPAALYQ-LMLDCWQKDRNRRPKFAQIVSTLDKLIRNP  895 (996)
T ss_pred             CCCCCCCcHHHHH-HHHHHHHHHhhcCCCHHHHHHHHHHHhcCc
Confidence            1223367677777 999999999999999999999999988763

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=324.78  Aligned_cols=267  Identities=21%  Similarity=0.327  Sum_probs=194.8

Q ss_pred             HHHHHHHHHHhhhhhhhhccccccccccccccccCCCCChHHHHHhhCCCCCceeecccCceeEEeccccCcH------H
Q 002376          614 IMAVIAGCFLIVWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSW------K  687 (929)
Q Consensus       614 ~~~~l~~~~~~~~~~~~rrr~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~------~  687 (929)
                      ..-.++.|+..+|.++........+...    ...=.+.|++|.+       .+.+|+|+.|.||.|+.....      +
T Consensus        88 ~~~GLfgC~rPV~~~iGk~~s~e~k~qq----~e~WeiPFe~IsE-------LeWlGSGaQGAVF~Grl~netVAVKKV~  156 (904)
T KOG4721|consen   88 FLEGLFGCLRPVWTMIGKAYSTEHKQQQ----EELWEIPFEEISE-------LEWLGSGAQGAVFLGRLHNETVAVKKVR  156 (904)
T ss_pred             HHHHHHhhhHHHHHHhccceeeehhhhh----hhhccCCHHHhhh-------hhhhccCcccceeeeeccCceehhHHHh
Confidence            3445667777777665432211100000    0111345666543       578999999999999987432      2


Q ss_pred             H-HHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccccc--------cccHHHHHHHhhhC
Q 002376          688 S-FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--------ELDITSALDYLHND  758 (929)
Q Consensus       688 ~-~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~--------~~~ia~aL~yLH~~  758 (929)
                      + -..+|+.|++++||||+.+.|+|..     ...+|||||||+.|.|+.+|+..+.+        ..+||.||.|||.+
T Consensus       157 elkETdIKHLRkLkH~NII~FkGVCtq-----sPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~h  231 (904)
T KOG4721|consen  157 ELKETDIKHLRKLKHPNIITFKGVCTQ-----SPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLH  231 (904)
T ss_pred             hhhhhhHHHHHhccCcceeeEeeeecC-----CceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHh
Confidence            2 2358889999999999999999954     44689999999999999999977655        46899999999998


Q ss_pred             CCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCC
Q 002376          759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFA  838 (929)
Q Consensus       759 ~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~  838 (929)
                         .|||||||+-||||..+..+||+|||.++.+.+       ....+.++||..|||||+++..++++|+||||||+++
T Consensus       232 ---KIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~-------~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVL  301 (904)
T KOG4721|consen  232 ---KIIHRDLKSPNILISYDDVVKISDFGTSKELSD-------KSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVL  301 (904)
T ss_pred             ---hHhhhccCCCceEeeccceEEeccccchHhhhh-------hhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHH
Confidence               899999999999999999999999999987632       2345678999999999999999999999999999998


Q ss_pred             CCcchhHHhhhcCCc-hh-hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          839 GEFNIVKWVESNLPE-NV-LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       839 ~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ||+.+.+.++..+.. .+ ..+-...+.-.++.      ..++.+.-    |+.+||+..|..||++++++..|+-..+.
T Consensus       302 WEmLT~EiPYkdVdssAIIwGVGsNsL~LpvPs------tcP~Gfkl----L~Kqcw~sKpRNRPSFrqil~HldIa~pe  371 (904)
T KOG4721|consen  302 WEMLTGEIPYKDVDSSAIIWGVGSNSLHLPVPS------TCPDGFKL----LLKQCWNSKPRNRPSFRQILLHLDIASPE  371 (904)
T ss_pred             HHHHhcCCCccccchheeEEeccCCcccccCcc------cCchHHHH----HHHHHHhcCCCCCccHHHHHHHHhhcCHH
Confidence            888877776655543 11 11111112111111      11122222    66699999999999999999888765443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=2e-37  Score=333.30  Aligned_cols=370  Identities=26%  Similarity=0.452  Sum_probs=236.5

Q ss_pred             CCCCCCCEEEeecCCCC-CCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCC
Q 002376           92 GNLSFLRSIQLQNNKLS-GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL  170 (929)
Q Consensus        92 ~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L  170 (929)
                      +-|+..+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-.+ +..|+.|
T Consensus         4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGE-Ls~Lp~L   80 (1255)
T KOG0444|consen    4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGE-LSDLPRL   80 (1255)
T ss_pred             cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhh-hccchhh
Confidence            33555666666666666 345666666666666666666665 56666666666666666666665 23222 4445555


Q ss_pred             cEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCC
Q 002376          171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPN  250 (929)
Q Consensus       171 ~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  250 (929)
                      +.+++..|++..                               +-+|..++.+..|+.||||+|++. +.|.++-. -.+
T Consensus        81 Rsv~~R~N~LKn-------------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn  127 (1255)
T KOG0444|consen   81 RSVIVRDNNLKN-------------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKN  127 (1255)
T ss_pred             HHHhhhcccccc-------------------------------CCCCchhcccccceeeecchhhhh-hcchhhhh-hcC
Confidence            555555554421                               123444555555555555555554 44544433 344


Q ss_pred             cceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCC
Q 002376          251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL  330 (929)
Q Consensus       251 L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L  330 (929)
                      +.+|+|++|++..+....|-+++.|-.||||+|++. .+|+....|..|++|.|++|.+....       +..+..+++|
T Consensus       128 ~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQ-------LrQLPsmtsL  199 (1255)
T KOG0444|consen  128 SIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQ-------LRQLPSMTSL  199 (1255)
T ss_pred             cEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHH-------HhcCccchhh
Confidence            555555555555433344557777777888888877 66767777777777777777664321       1233344555


Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      ++|++++.+=+                        ...+|.++..+.+|..+|||.|.+. .+|..+..+++|+.|+||+
T Consensus       200 ~vLhms~TqRT------------------------l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  200 SVLHMSNTQRT------------------------LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSG  254 (1255)
T ss_pred             hhhhcccccch------------------------hhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCc
Confidence            55555554432                        1235566666666666666666665 5666666666666666666


Q ss_pred             CcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecC
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD  490 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~  490 (929)
                      |+|+ .+........+|+.|+||.|+++ .+|.++..++.|+.|++.+|+++       +..+|+.|+.|.+|+.+..++
T Consensus       255 N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~-------FeGiPSGIGKL~~Levf~aan  325 (1255)
T KOG0444|consen  255 NKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT-------FEGIPSGIGKLIQLEVFHAAN  325 (1255)
T ss_pred             Ccee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc-------ccCCccchhhhhhhHHHHhhc
Confidence            6665 33444455567777777777777 57777777777888888777775       345677888888888888888


Q ss_pred             CCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcC
Q 002376          491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL  541 (929)
Q Consensus       491 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  541 (929)
                      |.+. ..|+.+..|..|+.|.|++|++- ..|+++--++.|+.|||..|.=
T Consensus       326 N~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  326 NKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             cccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            8876 77888888888888888888886 5788888888888888888843

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.9e-36  Score=314.11  Aligned_cols=233  Identities=24%  Similarity=0.314  Sum_probs=176.9

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .+.|+..++||.|..+.||+|+..                 .+.+...+|+..|+.++||||++++..|.....     +
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~-----L   99 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSE-----L   99 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecce-----e
Confidence            457899999999999999998875                 234678899999999999999999999876443     8


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |+||.||.+|++.+.++..-          .+..++++||.|||++   |.||||||+.||||+++|.+||+|||.+..+
T Consensus       100 WvVmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHRdvKAgnILi~~dG~VkLadFgvsa~l  176 (516)
T KOG0582|consen  100 WVVMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQN---GHIHRDVKAGNILIDSDGTVKLADFGVSASL  176 (516)
T ss_pred             EEeehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhc---CceecccccccEEEcCCCcEEEcCceeeeee
Confidence            99999999999999987322          2356899999999999   9999999999999999999999999988776


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc--
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT--  868 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--  868 (929)
                      ..... +.... ...++||+.|||||+++..  .|+.|+||||||+.+.|+..+..++..+|.  .+++-..+....+  
T Consensus       177 ~~~G~-R~~~r-f~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pP--mkvLl~tLqn~pp~~  252 (516)
T KOG0582|consen  177 FDSGD-RQVTR-FNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPP--MKVLLLTLQNDPPTL  252 (516)
T ss_pred             cccCc-eeeEe-eccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCCh--HHHHHHHhcCCCCCc
Confidence            54321 11111 1667999999999995443  599999999999999888888888887775  1111111111100  


Q ss_pred             ----ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 ----SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ----~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          .+..+...    ..+-+++++..|++.||++|||++++++
T Consensus       253 ~t~~~~~d~~k~----~~ksf~e~i~~CL~kDP~kRptAskLlk  292 (516)
T KOG0582|consen  253 LTSGLDKDEDKK----FSKSFREMIALCLVKDPSKRPTASKLLK  292 (516)
T ss_pred             ccccCChHHhhh----hcHHHHHHHHHHhhcCcccCCCHHHHhc
Confidence                00111111    1122333666999999999999999874

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-35  Score=310.76  Aligned_cols=233  Identities=28%  Similarity=0.347  Sum_probs=173.0

Q ss_pred             CCCCCceeecccCceeEEeccccC------------c----HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------S----WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------~----~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++...+.||+|+||.||.+....            .    .+.+.+|+++|++++|||||+.+|.....+.   ..+++
T Consensus        17 ~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~---~~~~i   93 (313)
T KOG0198|consen   17 SNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSREN---DEYNI   93 (313)
T ss_pred             chhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccC---eeeEe
Confidence            356677899999999999987752            1    3447899999999999999999998544332   35899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~~~~  794 (929)
                      .|||+++|+|.+++....         .+..||++||+|||++   +||||||||+|||++. ++.+||+|||+++....
T Consensus        94 ~mEy~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~  170 (313)
T KOG0198|consen   94 FMEYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSK---GIVHCDIKPANILLDPSNGDVKLADFGLAKKLES  170 (313)
T ss_pred             eeeccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCcccceEEEeCCCCeEEeccCcccccccc
Confidence            999999999999987543         3367999999999998   9999999999999999 79999999999987642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                         ..........+.||+.|||||++..+. ...++||||+||+..||.+..-+|..+-+.     ...+.......  .
T Consensus       171 ---~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~-----~~~~~~ig~~~--~  240 (313)
T KOG0198|consen  171 ---KGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEE-----AEALLLIGRED--S  240 (313)
T ss_pred             ---ccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcch-----HHHHHHHhccC--C
Confidence               011112234578999999999998643 345999999999999887765454442110     11111111111  1


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .+..++.++...++++.+|+..||++||||+|+++.
T Consensus       241 ~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~h  276 (313)
T KOG0198|consen  241 LPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEH  276 (313)
T ss_pred             CCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhC
Confidence            112233344455567779999999999999999865

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=3.1e-37  Score=331.78  Aligned_cols=330  Identities=27%  Similarity=0.464  Sum_probs=258.1

Q ss_pred             CCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCccccc
Q 002376          193 PSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNL  272 (929)
Q Consensus       193 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l  272 (929)
                      |+.++.+.+|++|.+++|++. .+-+.+..++.|+.+++..|++..                        .-+|..+..+
T Consensus        48 PeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKn------------------------sGiP~diF~l  102 (1255)
T KOG0444|consen   48 PEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKN------------------------SGIPTDIFRL  102 (1255)
T ss_pred             hHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhcccccc------------------------CCCCchhccc
Confidence            334445555555555555555 344556677778888888887752                        2356666677


Q ss_pred             ccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcc
Q 002376          273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFS  352 (929)
Q Consensus       273 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  352 (929)
                      ..|++||||+|++. ..|..+...+++-.|+|++|+|.+++.       .-|.+++.|-+||||+|++. .+|..+..+.
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn-------~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~  173 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN-------SLFINLTDLLFLDLSNNRLE-MLPPQIRRLS  173 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc-------hHHHhhHhHhhhccccchhh-hcCHHHHHHh
Confidence            78888888888887 677778888888888888888877765       35678888889999999998 7788888887


Q ss_pred             ccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCC-cccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceec
Q 002376          353 NELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS-GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID  431 (929)
Q Consensus       353 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  431 (929)
                       .|++|+|++|.+...--..+-.+++|++|.+|+.+-+ ..+|.++..+.+|..+|+|.|.++ .+|+.+.++.+|+.|+
T Consensus       174 -~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  174 -MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLN  251 (1255)
T ss_pred             -hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheec
Confidence             7999999999876544445566788888999886643 467888888999999999999987 7888999999999999


Q ss_pred             ccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCC-CCCCcchhcCcCccee
Q 002376          432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS-GNLPNSLKNCKSLEEL  510 (929)
Q Consensus       432 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L  510 (929)
                      ||+|+|+ .+....+.+.+|++|+||.|+++         .+|+.+..|+.|+.|++.+|+++ .-+|+.++.+.+|+.+
T Consensus       252 LS~N~it-eL~~~~~~W~~lEtLNlSrNQLt---------~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf  321 (1255)
T KOG0444|consen  252 LSGNKIT-ELNMTEGEWENLETLNLSRNQLT---------VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVF  321 (1255)
T ss_pred             cCcCcee-eeeccHHHHhhhhhhccccchhc---------cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHH
Confidence            9999988 56666777888999999999886         34888888889999999888876 2478888888889999


Q ss_pred             ecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          511 LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       511 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      ..++|.+. ..|..++.+..|+.|.|+.|+|- ++|+.+.-|+.|+.|||..|.=--.+|
T Consensus       322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            98888887 78888888888999999999887 688888888888888888886444444

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=6.9e-36  Score=308.91  Aligned_cols=219  Identities=30%  Similarity=0.345  Sum_probs=166.2

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..++||+|+||+||.++.+                   +..+...+|..+|.+++||+||+++..|.     +.+
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQ-----t~~   98 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQ-----TEE   98 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecc-----cCC
Confidence            468899999999999999987765                   23456778999999999999999998884     445


Q ss_pred             eEEEEEEecCCCCccccccccccc--------cccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGERKN--------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~~~--------~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .+|+|+||+.||.|..+|.+.+.+        +.+|+.||.|||+.   +|||||+||+|||+|++|.++++|||+++..
T Consensus        99 kLylVld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~---gIiyRDlKPENILLd~~GHi~LtDFgL~k~~  175 (357)
T KOG0598|consen   99 KLYLVLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSK---GIIYRDLKPENILLDEQGHIKLTDFGLCKED  175 (357)
T ss_pred             eEEEEEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHeeecCCCcEEEeccccchhc
Confidence            699999999999999999855433        56799999999998   9999999999999999999999999999854


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      -.      ....+..++||+.|||||++.+..|+..+|-||+|+++|+|....-++...  ...++++..+.+.....  
T Consensus       176 ~~------~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~--~~~~~~~~I~~~k~~~~--  245 (357)
T KOG0598|consen  176 LK------DGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAE--DVKKMYDKILKGKLPLP--  245 (357)
T ss_pred             cc------CCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCc--cHHHHHHHHhcCcCCCC--
Confidence            21      122344589999999999999999999999999998877764433222111  12223333222211111  


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCC
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRI  901 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  901 (929)
                           +..+..-.++++.+.+..||++|-
T Consensus       246 -----p~~ls~~ardll~~LL~rdp~~RL  269 (357)
T KOG0598|consen  246 -----PGYLSEEARDLLKKLLKRDPRQRL  269 (357)
T ss_pred             -----CccCCHHHHHHHHHHhccCHHHhc
Confidence                 111222233466699999999995

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.5e-35  Score=326.74  Aligned_cols=239  Identities=21%  Similarity=0.296  Sum_probs=179.7

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      +-..++....++||+|+||+||+|+..                       ...++|++|+++|+.++|||||+++|++..
T Consensus       153 el~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~  232 (474)
T KOG0194|consen  153 ELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVL  232 (474)
T ss_pred             EEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcC
Confidence            333445556689999999999998764                       124579999999999999999999999987


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      ..+     +++|||+|+||+|.++|++..         .++.++|+||+|||+.   ++|||||.++|+|++.++.+||+
T Consensus       233 ~~P-----l~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHRDIAARNcL~~~~~~vKIS  304 (474)
T KOG0194|consen  233 EEP-----LMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSK---NCIHRDIAARNCLYSKKGVVKIS  304 (474)
T ss_pred             CCc-----cEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHC---CCcchhHhHHHheecCCCeEEeC
Confidence            665     899999999999999998654         2367899999999998   99999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPEL  863 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l  863 (929)
                      |||+++.-.....      ......-...|+|||.+..+.|+.++||||||+.+||+....  ...++. ...++ ...+
T Consensus       305 DFGLs~~~~~~~~------~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~~g--~~Py~g~~~~~v-~~kI  375 (474)
T KOG0194|consen  305 DFGLSRAGSQYVM------KKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFENG--AEPYPGMKNYEV-KAKI  375 (474)
T ss_pred             ccccccCCcceee------ccccccCcceecChhhhccCccccccchhheeeeEEeeeccC--CCCCCCCCHHHH-HHHH
Confidence            9999985421110      010113467899999999999999999999999999954311  112322 11111 1111


Q ss_pred             -HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          864 -RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       864 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                       ...+      +...+...++.++.++.+||..+|++||+|.++.+.++.+.....
T Consensus       376 ~~~~~------r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~~l~~~~~~~~  425 (474)
T KOG0194|consen  376 VKNGY------RMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKKKLEALEKKKE  425 (474)
T ss_pred             HhcCc------cCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHHHHHHHHhccc
Confidence             1111      111222334444457779999999999999999999999887755

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=7.7e-36  Score=297.49  Aligned_cols=233  Identities=21%  Similarity=0.332  Sum_probs=168.4

Q ss_pred             CCCCCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +.|+...++|+|+||+|||++.+.+                  .+-.++|+++|++++|||+|.++++|.     ....+
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFr-----rkrkl   76 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFR-----RKRKL   76 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHH-----hccee
Confidence            3567778999999999999988721                  234669999999999999999999994     44558


Q ss_pred             EEEEEecCCCCcccccc--------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIH--------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~--------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++|+|||+..-|.+.=+        ..+.+..|++.|+.|+|++   ++|||||||+||||+.+|.+|+||||+||.+..
T Consensus        77 hLVFE~~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~  153 (396)
T KOG0593|consen   77 HLVFEYCDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKN---NCIHRDIKPENILITQNGVVKLCDFGFARTLSA  153 (396)
T ss_pred             EEEeeecchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhc---CeecccCChhheEEecCCcEEeccchhhHhhcC
Confidence            99999998754444322        1235578999999999998   999999999999999999999999999998752


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hh---hhc---cChHHHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NV---LQV---LDPELRQ  865 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~---~~~---~~~~l~~  865 (929)
                            .....+..+.|.+|+|||.+.| ..|+..+|||+.||+..|+..++-.|..-.+  .+   ...   +-++...
T Consensus       154 ------pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~  227 (396)
T KOG0593|consen  154 ------PGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQS  227 (396)
T ss_pred             ------CcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHH
Confidence                  1223456688999999999998 5799999999999987776555443332222  10   000   0111111


Q ss_pred             hhcc----------cchhhhhhh---HHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          866 LMTS----------NESQTIQLH---DCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       866 ~~~~----------~~~~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      .+..          +.+......   ..+..++-+++..|++.||++|++-+|++
T Consensus       228 iF~~N~~F~Gv~lP~~~~~epLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll  282 (396)
T KOG0593|consen  228 IFSSNPFFHGVRLPEPEHPEPLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLL  282 (396)
T ss_pred             HhccCCceeeeecCCCCCccchhhhcccchHHHHHHHHHHhcCCccccccHHHHh
Confidence            1111          000000000   12233555588999999999999999886

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-35  Score=346.00  Aligned_cols=239  Identities=23%  Similarity=0.341  Sum_probs=182.9

Q ss_pred             CCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      +..+..+.||+|+||.||+|...                      +...+|.+|..+|++++|||||+++|+|.+...  
T Consensus       692 ~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~--  769 (1025)
T KOG1095|consen  692 KNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGP--  769 (1025)
T ss_pred             hheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCC--
Confidence            34456789999999999998764                      235689999999999999999999999987443  


Q ss_pred             cceEEEEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                         .++++|||++|+|..||++.|               .++.|||+|+.||++.   .+|||||.++|+|+++...|||
T Consensus       770 ---~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHRDLAaRNCLL~~~r~VKI  843 (1025)
T KOG1095|consen  770 ---PLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHRDLAARNCLLDERRVVKI  843 (1025)
T ss_pred             ---cEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCcchhhhheeecccCcEEE
Confidence               699999999999999998663               2367999999999998   8999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChH
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPE  862 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~  862 (929)
                      +|||+||.+....--...    ....-...|||||.++.+.+++|+||||||+++||+..  .-...|++ .-.+++..-
T Consensus       844 aDFGlArDiy~~~yyr~~----~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEifs--lG~~PY~~~~n~~v~~~~  917 (1025)
T KOG1095|consen  844 ADFGLARDIYDKDYYRKH----GEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIFS--LGATPYPSRSNFEVLLDV  917 (1025)
T ss_pred             cccchhHhhhhchheecc----CccccceecCCHHHHhhcccccccchhhhHHHHHHHHh--CCCCCCCCcchHHHHHHH
Confidence            999999955322111111    11123468999999999999999999999998888422  22223333 222222222


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      +.+     . .-.+...|..++++ +|..||+.+|++||++++++++++.+.......
T Consensus       918 ~~g-----g-RL~~P~~CP~~ly~-lM~~CW~~~pe~RP~F~~i~~q~~~i~~~~~~~  968 (1025)
T KOG1095|consen  918 LEG-----G-RLDPPSYCPEKLYQ-LMLQCWKHDPEDRPSFRTIVEQDPAISNAALGT  968 (1025)
T ss_pred             HhC-----C-ccCCCCCCChHHHH-HHHHHccCChhhCccHHHHHhhhhhhhhhhccC
Confidence            221     1 11122346666775 999999999999999999999999998876544

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-36  Score=316.12  Aligned_cols=234  Identities=24%  Similarity=0.328  Sum_probs=170.6

Q ss_pred             hCCCCCceeecccCceeEEeccccCc---------------HHHH--HHHHHHHHccC-CccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS---------------WKSF--IAECETLRNVR-HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~--~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|...++||.|+||.||+|+....               .++.  .||++.|++++ |||||++.+++.+.+.    .
T Consensus         9 m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~----~   84 (538)
T KOG0661|consen    9 MDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDR----I   84 (538)
T ss_pred             HHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCc----e
Confidence            35778889999999999999987622               1222  37999999998 9999999999976442    5


Q ss_pred             EEEEEEecCCCCcccccccccc---------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~~---------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +|+|||||+ .+|++.++++++         +..||++||+|+|.+   |++|||+||+|||+.....+||+|||+||.+
T Consensus        85 L~fVfE~Md-~NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~---GfFHRDlKPENiLi~~~~~iKiaDFGLARev  160 (538)
T KOG0661|consen   85 LYFVFEFMD-CNLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKH---GFFHRDLKPENILISGNDVIKIADFGLAREV  160 (538)
T ss_pred             EeeeHHhhh-hhHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhc---CcccccCChhheEecccceeEeccccccccc
Confidence            999999996 599999986543         367999999999998   9999999999999998899999999999976


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--h---hhhccCh-----
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--N---VLQVLDP-----  861 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~---~~~~~~~-----  861 (929)
                      ..       ....+..+.|.+|+|||++.. +.|+.+.|||++||+++|+....-.+....+  .   +-+++..     
T Consensus       161 ~S-------kpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~VLGtP~~~~  233 (538)
T KOG0661|consen  161 RS-------KPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICEVLGTPDKDS  233 (538)
T ss_pred             cc-------CCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHhCCCcccc
Confidence            31       233566789999999998764 5689999999999999886544333332222  1   1111110     


Q ss_pred             -----HHHHhhcccchh------hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          862 -----ELRQLMTSNESQ------TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       862 -----~l~~~~~~~~~~------~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                           .+...+.-...+      ..-.+.+..+.++ ++.+|++|||++||||+|+++.
T Consensus       234 ~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~-li~~ll~WDP~kRpTA~~al~~  291 (538)
T KOG0661|consen  234 WPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAAS-LIERLLAWDPDKRPTASQALQH  291 (538)
T ss_pred             chhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHH-HHHHHhcCCCccCccHHHHhcC
Confidence                 010000000000      0001123344555 8889999999999999999864

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=5.3e-35  Score=313.42  Aligned_cols=233  Identities=24%  Similarity=0.338  Sum_probs=180.4

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      ++...+|.+.+.||+|+|++||+|+....                   .+-..+|-.+|.++ .||.||+|+..|.+.. 
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~-  147 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEE-  147 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeeccc-
Confidence            44567899999999999999999987632                   22344788899999 8999999999985443 


Q ss_pred             CCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                          .+|+|+||+++|+|.+++++.        |.++.+|..|++|||+.   |||||||||+|||+|+||++||+|||.
T Consensus       148 ----sLYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~---GIIHRDlKPENILLd~dmhikITDFGs  220 (604)
T KOG0592|consen  148 ----SLYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSN---GIIHRDLKPENILLDKDGHIKITDFGS  220 (604)
T ss_pred             ----ceEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeEcCCCcEEEeeccc
Confidence                499999999999999999853        45688999999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCC-------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhcc
Q 002376          789 ARFLLERVDNQS-------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVL  859 (929)
Q Consensus       789 a~~~~~~~~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~  859 (929)
                      |+.+.+......       .......++||..|++||++.....+..+|+|++||++|.|..+.-++....+  .+.+++
T Consensus       221 AK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~  300 (604)
T KOG0592|consen  221 AKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQ  300 (604)
T ss_pred             cccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHH
Confidence            998865433211       11112568999999999999999999999999999988877665555554444  122222


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      +-..            ++++..++.+++|+.+.+..||.+|+|..+|-+-
T Consensus       301 ~l~y------------~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~H  338 (604)
T KOG0592|consen  301 ALDY------------EFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAH  338 (604)
T ss_pred             Hhcc------------cCCCCCCHHHHHHHHHHHccCccccccHHHHhhC
Confidence            2111            1111223444557779999999999999887653

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=5.4e-35  Score=310.90  Aligned_cols=172  Identities=28%  Similarity=0.395  Sum_probs=142.0

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +.|+..++||+|+||.||+|++..                  ......+||.+|++++||||+++.+..++.   ....+
T Consensus       117 ~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~---~~~si  193 (560)
T KOG0600|consen  117 DSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSK---LSGSI  193 (560)
T ss_pred             HHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEec---CCceE
Confidence            356667889999999999998762                  234567999999999999999999998764   23459


Q ss_pred             EEEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      |||+|||++ ||.-++..         .+.+..|++.||+|+|++   +|+|||||.+|||||.+|.+||+|||+|+++.
T Consensus       194 YlVFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~---gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~  269 (560)
T KOG0600|consen  194 YLVFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSR---GVLHRDIKGSNILIDNNGVLKIADFGLARFYT  269 (560)
T ss_pred             EEEEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhc---CeeeccccccceEEcCCCCEEeccccceeecc
Confidence            999999986 77776652         234578999999999998   99999999999999999999999999999875


Q ss_pred             cccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ....     ...+..+-|.+|+|||++.|.. |+.++|+||.||++.|+...
T Consensus       270 ~~~~-----~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~g  316 (560)
T KOG0600|consen  270 PSGS-----APYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLG  316 (560)
T ss_pred             CCCC-----cccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcC
Confidence            3311     1244557799999999999875 99999999999988776443

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.5e-35  Score=316.06  Aligned_cols=226  Identities=22%  Similarity=0.285  Sum_probs=174.4

Q ss_pred             CCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .|..-.+||+|+.|.||.++...                ..+-..+|+.+|+..+|+|||++++.|...+     .+|+|
T Consensus       274 ~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~d-----eLWVV  348 (550)
T KOG0578|consen  274 KYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGD-----ELWVV  348 (550)
T ss_pred             hhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccc-----eeEEE
Confidence            45556789999999999887652                2345779999999999999999999886543     48999


Q ss_pred             EEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          726 YEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||||++|+|.|.+...+       .++.++++||+|||.+   +|+|||||.+|||++.+|.+||+|||++..+..+.. 
T Consensus       349 MEym~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~---gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~-  424 (550)
T KOG0578|consen  349 MEYMEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHAR---GIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS-  424 (550)
T ss_pred             EeecCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhc---ceeeeccccceeEeccCCcEEEeeeeeeeccccccC-
Confidence            99999999999987543       3356788999999998   999999999999999999999999999987754321 


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                           .....+||+.|||||++....|++|+||||+|+.+.||.-++-++-. ...+.     ++.- +..........+
T Consensus       425 -----KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln-E~Plr-----AlyL-Ia~ng~P~lk~~  492 (550)
T KOG0578|consen  425 -----KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN-ENPLR-----ALYL-IATNGTPKLKNP  492 (550)
T ss_pred             -----ccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccC-CChHH-----HHHH-HhhcCCCCcCCc
Confidence                 34456999999999999999999999999999777665333322211 00111     1111 111222333444


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.++..++++..+|++.||++||++.|+++
T Consensus       493 ~klS~~~kdFL~~cL~~dv~~RasA~eLL~  522 (550)
T KOG0578|consen  493 EKLSPELKDFLDRCLVVDVEQRASAKELLE  522 (550)
T ss_pred             cccCHHHHHHHHHHhhcchhcCCCHHHHhc
Confidence            556677777888999999999999999985

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=100.00  E-value=1.6e-34  Score=322.21  Aligned_cols=237  Identities=21%  Similarity=0.314  Sum_probs=171.8

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..++||+|+||.||+|.+.                      ...+.+.+|+.+++++ +|||||+++++|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-   84 (338)
T cd05102           6 RDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN-   84 (338)
T ss_pred             hhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC-
Confidence            467888999999999999998531                      1134688999999999 8999999999986432 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------------------------------------------
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------------------------------------------  742 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------------------------------------  742 (929)
                         ...++||||+++|+|.++++..+                                                      
T Consensus        85 ---~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T cd05102          85 ---GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQ  161 (338)
T ss_pred             ---CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccch
Confidence               24799999999999998886321                                                      


Q ss_pred             ----------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccc
Q 002376          743 ----------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH  806 (929)
Q Consensus       743 ----------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~  806 (929)
                                      .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+.....    .....
T Consensus       162 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~----~~~~~  234 (338)
T cd05102         162 ETDDLWKSPLTMEDLICYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD----YVRKG  234 (338)
T ss_pred             hccccccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCccceEEEcCCCcEEEeecccccccccCcc----hhccc
Confidence                            1245899999999998   999999999999999999999999999986532111    11112


Q ss_pred             eeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHH
Q 002376          807 VFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITII  885 (929)
Q Consensus       807 ~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  885 (929)
                      ...+++.|||||++.+..++.++||||+|+++|++.. ...++.....      +..+...........  .+......+
T Consensus       235 ~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~l  306 (338)
T cd05102         235 SARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQI------NEEFCQRLKDGTRMR--APENATPEI  306 (338)
T ss_pred             CCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCc------cHHHHHHHhcCCCCC--CCCCCCHHH
Confidence            2356788999999999999999999999988877542 2222221110      111111111111000  011112223


Q ss_pred             HHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          886 GSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       886 ~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      .+++.+||+.||++||||.|++++|+++.+
T Consensus       307 ~~li~~cl~~dp~~RPs~~el~~~l~~~~~  336 (338)
T cd05102         307 YRIMLACWQGDPKERPTFSALVEILGDLLQ  336 (338)
T ss_pred             HHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence            348889999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-34  Score=311.35  Aligned_cols=240  Identities=22%  Similarity=0.337  Sum_probs=185.1

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++++...-+....++||-|.||.||.|.|++               ..++|.+|+.+|+.++|||+|+++|+|.....  
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP--  337 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP--  337 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC--
Confidence            4444434456677899999999999999873               25789999999999999999999999976544  


Q ss_pred             cceEEEEEEecCCCCcccccccccc----------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGERK----------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~~----------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                         +|||+|||.+|+|.+||++..+          .+.||+.||+||...   .+||||+.++|+|+.++..+||+|||+
T Consensus       338 ---FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkk---nFIHRDLAARNCLVgEnhiVKvADFGL  411 (1157)
T KOG4278|consen  338 ---FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHIVKVADFGL  411 (1157)
T ss_pred             ---eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHh---hhhhhhhhhhhccccccceEEeeccch
Confidence               7999999999999999985432          267999999999998   899999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLM  867 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~  867 (929)
                      +|++..+.-     .......-.+.|.|||.+....++.|+|||+||+++||+.++-+  ..||. ...++.+-- ...+
T Consensus       412 sRlMtgDTY-----TAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGM--sPYPGidlSqVY~LL-Ekgy  483 (1157)
T KOG4278|consen  412 SRLMTGDTY-----TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGM--SPYPGIDLSQVYGLL-EKGY  483 (1157)
T ss_pred             hhhhcCCce-----ecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCC--CCCCCccHHHHHHHH-hccc
Confidence            999864311     11111122568999999999999999999999988888554332  33443 222322211 1112


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      .++..+     -|..++++ ||++||+|+|.+||+++|+-+.+|.+..
T Consensus       484 RM~~Pe-----GCPpkVYe-LMraCW~WsPsDRPsFaeiHqafEtmf~  525 (1157)
T KOG4278|consen  484 RMDGPE-----GCPPKVYE-LMRACWNWSPSDRPSFAEIHQAFETMFS  525 (1157)
T ss_pred             cccCCC-----CCCHHHHH-HHHHHhcCCcccCccHHHHHHHHHHHhc
Confidence            222221     36677777 9999999999999999999999988654

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-34  Score=300.61  Aligned_cols=237  Identities=23%  Similarity=0.266  Sum_probs=174.1

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc------------------------------CcHHHHHHHHHHHHccCCccccc
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT------------------------------GSWKSFIAECETLRNVRHRNLVK  706 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~------------------------------~~~~~~~~E~~~l~~l~Hpniv~  706 (929)
                      .+..++|+..+.||+|.||+|-+|+..                              ...+...+||.+|++++|||||+
T Consensus        93 ~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~  172 (576)
T KOG0585|consen   93 RKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVK  172 (576)
T ss_pred             ceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeE
Confidence            345678999999999999999776654                              11357889999999999999999


Q ss_pred             eeeecccCCCCCcceEEEEEEecCCCCcccccc--------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       707 l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~--------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                      ++++.-+.   ....+|||+|||..|.+...-.        .+|++..++..||+|||.+   +||||||||+|+|++++
T Consensus       173 LiEvLDDP---~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~Q---giiHRDIKPsNLLl~~~  246 (576)
T KOG0585|consen  173 LIEVLDDP---ESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQ---GIIHRDIKPSNLLLSSD  246 (576)
T ss_pred             EEEeecCc---ccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEEcCC
Confidence            99997553   3456999999999998765322        3566788999999999999   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCC----CCCCCCCCCCcCCCCCcchhHHhhhcCCch
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER----PSTAGDVPTSESFAGEFNIVKWVESNLPEN  854 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~  854 (929)
                      |++||+|||.+.......... ........+|||.|||||...++.    .+.+.||||+|+++|.+..+..++..-  .
T Consensus       247 g~VKIsDFGVs~~~~~~~~~~-~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~--~  323 (576)
T KOG0585|consen  247 GTVKISDFGVSNEFPQGSDEG-SDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD--F  323 (576)
T ss_pred             CcEEeeccceeeecccCCccc-cHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc--h
Confidence            999999999998664331111 112234468999999999988743    478999999998777765444443211  2


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..+..+......+.....      ..+.+.+++|+.++++.||++|.+..||..
T Consensus       324 ~~~l~~KIvn~pL~fP~~------pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~  371 (576)
T KOG0585|consen  324 ELELFDKIVNDPLEFPEN------PEINEDLKDLIKRLLEKDPEQRITLPDIKL  371 (576)
T ss_pred             HHHHHHHHhcCcccCCCc------ccccHHHHHHHHHHhhcChhheeehhhhee
Confidence            222233322221111000      123455667888999999999999988753

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=3e-36  Score=340.23  Aligned_cols=462  Identities=26%  Similarity=0.340  Sum_probs=379.3

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccccccc
Q 002376           76 LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKI  155 (929)
Q Consensus        76 l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  155 (929)
                      +|++..+++ .||..+-.-..++.|+++.|-+-...-+...+.-+|+.||||+|++. ..|..+..+..|+.|+++.|.|
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence            456666666 67777766667999999999876332333445556999999999998 8999999999999999999999


Q ss_pred             CCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       156 ~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      . .+|.. ..++.+|++|+|.+|.+         ...|..+..+++|+.||+|+|++. .+|..+..++.++.+..++|.
T Consensus        81 ~-~vp~s-~~~~~~l~~lnL~~n~l---------~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~  148 (1081)
T KOG0618|consen   81 R-SVPSS-CSNMRNLQYLNLKNNRL---------QSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNE  148 (1081)
T ss_pred             h-hCchh-hhhhhcchhheeccchh---------hcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcch
Confidence            8 67755 89999999999999986         346778888999999999999998 789999999999999999993


Q ss_pred             CCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCC
Q 002376          236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDD  315 (929)
Q Consensus       236 l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~  315 (929)
                      ....++.      ...+.+++..|.+.+.++..+.+++.  .|||.+|.+. .  -.+.++.+|+.+....|++..... 
T Consensus       149 ~~~~lg~------~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~-  216 (1081)
T KOG0618|consen  149 KIQRLGQ------TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEI-  216 (1081)
T ss_pred             hhhhhcc------ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEe-
Confidence            2212221      22677888889999999988888887  8999999997 2  346788899999999999876532 


Q ss_pred             CCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCc
Q 002376          316 EGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPI  395 (929)
Q Consensus       316 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  395 (929)
                                ..++|+.|+.++|.++...+..   .+.+|+++++++|++++ +|++++.+.+|+.++..+|+++ .+|.
T Consensus       217 ----------~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~  281 (1081)
T KOG0618|consen  217 ----------SGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPL  281 (1081)
T ss_pred             ----------cCcchheeeeccCcceeecccc---ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHH
Confidence                      3478999999999998443322   23479999999999995 5699999999999999999996 7899


Q ss_pred             cccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccc-cceecccCCcCCCCCCCCcccCCc
Q 002376          396 EIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS-LLSIDLSNNRINGNIPKGILRPLP  474 (929)
Q Consensus       396 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~g~i~~~~~~~~p  474 (929)
                      .+..+++|+.|....|.++ .+|.....++.|++|||..|+|....+..|.-+.. |..|+.+.|+++. .|.       
T Consensus       282 ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~-------  352 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLST-LPS-------  352 (1081)
T ss_pred             HHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccc-ccc-------
Confidence            9999999999999999998 57777888999999999999998444433443333 7888888888862 220       


Q ss_pred             hhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCC
Q 002376          475 EEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQA  554 (929)
Q Consensus       475 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  554 (929)
                      -+=.....|+.|++.+|.|+...-..+.+.+.|+.|+|++|+|...+...+.++..|+.|+||+|+|+ .+|..+.++..
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~  431 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR  431 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence            01123467899999999999888778999999999999999999777778899999999999999999 78999999999


Q ss_pred             CCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCC
Q 002376          555 LRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL  589 (929)
Q Consensus       555 L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~  589 (929)
                      |++|...+|++...+ +..+.+.++.++++.|...
T Consensus       432 L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  432 LHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS  465 (1081)
T ss_pred             hHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence            999999999999764 7778899999999988543

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=8.1e-35  Score=305.21  Aligned_cols=224  Identities=24%  Similarity=0.305  Sum_probs=172.2

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ..|...+.||+|+||.||||.+..                 ..++..+|+.++..++++||.+++|.+.....     ++
T Consensus        13 ~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~-----Lw   87 (467)
T KOG0201|consen   13 LLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTK-----LW   87 (467)
T ss_pred             cccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeeccc-----HH
Confidence            356667899999999999998762                 24577889999999999999999999876443     89


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||.+|++.+.++...        .+..++..|+.|+|.+   +.+|||||+.|||+..+|.+|++|||++..+...
T Consensus        88 iiMey~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~---~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~  164 (467)
T KOG0201|consen   88 IIMEYCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSE---KKIHRDIKAANILLSESGDVKLADFGVAGQLTNT  164 (467)
T ss_pred             HHHHHhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhc---ceecccccccceeEeccCcEEEEecceeeeeech
Confidence            9999999999999887332        2357899999999998   9999999999999999999999999999877432


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  874 (929)
                            ......++||+.|||||++.+..|+.|+||||+|++++|+..++-++..... ++.-.+        ++..++.
T Consensus       165 ------~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflI--------pk~~PP~  230 (467)
T KOG0201|consen  165 ------VKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLI--------PKSAPPR  230 (467)
T ss_pred             ------hhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEec--------cCCCCCc
Confidence                  2223568999999999999988999999999999888776555544433321 111111        1111111


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+  ....+.+++++..|++.||+.||+|.++++
T Consensus       231 L~--~~~S~~~kEFV~~CL~k~P~~RpsA~~LLK  262 (467)
T KOG0201|consen  231 LD--GDFSPPFKEFVEACLDKNPEFRPSAKELLK  262 (467)
T ss_pred             cc--cccCHHHHHHHHHHhhcCcccCcCHHHHhh
Confidence            11  112333444666999999999999999874

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=100.00  E-value=7.1e-34  Score=312.00  Aligned_cols=237  Identities=23%  Similarity=0.311  Sum_probs=167.9

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------------------CcHHHHHHHHHHHHccCCccccce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------------------GSWKSFIAECETLRNVRHRNLVKL  707 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------------------~~~~~~~~E~~~l~~l~Hpniv~l  707 (929)
                      ++|...++||+|+||.||++.+.                                 ...++|.+|++++++++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            46788899999999999987521                                 113468899999999999999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCccccccccc---------------------------cccccHHHHHHHhhhCCC
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------------------------KNELDITSALDYLHNDCE  760 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------~~~~~ia~aL~yLH~~~~  760 (929)
                      ++++.+.+     ..++||||+++|+|.+++....                           .++.|++.||+|||+.  
T Consensus        85 ~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~--  157 (304)
T cd05096          85 LGVCVDED-----PLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL--  157 (304)
T ss_pred             EEEEecCC-----ceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC--
Confidence            99986533     3799999999999998875321                           3467899999999998  


Q ss_pred             CCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCC
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGE  840 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~  840 (929)
                       +|+||||||+||++++++.+||+|||+++.+.....    ........++..|||||++.++.++.++||||+|+++++
T Consensus       158 -~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~e  232 (304)
T cd05096         158 -NFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDY----YRIQGRAVLPIRWMAWECILMGKFTTASDVWAFGVTLWE  232 (304)
T ss_pred             -CccccCcchhheEEcCCccEEECCCccceecccCce----eEecCcCCCCccccCHHHHhcCCCCchhhhHHHHHHHHH
Confidence             899999999999999999999999999986532110    011122346789999999998899999999999988877


Q ss_pred             cch--hHHhhhcCCc-hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          841 FNI--VKWVESNLPE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       841 ~~~--~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      +..  ...++..... ...+.+............  ....+.+...+ .+++.+||+.||++||||.||.+.|++
T Consensus       233 l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~li~~cl~~~p~~RPs~~~i~~~l~~  304 (304)
T cd05096         233 ILMLCKEQPYGELTDEQVIENAGEFFRDQGRQVY--LFRPPPCPQGL-YELMLQCWSRDCRERPSFSDIHAFLTE  304 (304)
T ss_pred             HHHccCCCCCCcCCHHHHHHHHHHHhhhcccccc--ccCCCCCCHHH-HHHHHHHccCCchhCcCHHHHHHHHhC
Confidence            532  1122221111 111111010000000000  00001112223 348889999999999999999998864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=311.97  Aligned_cols=226  Identities=28%  Similarity=0.344  Sum_probs=171.9

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccC-CccccceeeecccCC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLD  715 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~  715 (929)
                      ...+.|...+.||+|+||+|+.|+...                     ..+...+|+.++++++ ||||+++++++....
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            345689999999999999999986641                     1335558999999999 999999999995533


Q ss_pred             CCCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEecc
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDF  786 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~Df  786 (929)
                           .+|+||||+.+|+|.+++...        +.+..|++.|++|+|+.   +|+||||||+|||+|.+ +.+||+||
T Consensus        94 -----~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~---gi~HRDLK~ENilld~~~~~~Kl~DF  165 (370)
T KOG0583|consen   94 -----KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSR---GIVHRDLKPENILLDGNEGNLKLSDF  165 (370)
T ss_pred             -----eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEecCCCCCEEEecc
Confidence                 389999999999999998752        34578999999999998   99999999999999999 99999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC-C-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-P-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |++....      .........+||+.|+|||++.+.. | +.++||||+|+++|.+..+.+++....       .+.+.
T Consensus       166 G~s~~~~------~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~-------~~~l~  232 (370)
T KOG0583|consen  166 GLSAISP------GEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSN-------VPNLY  232 (370)
T ss_pred             ccccccC------CCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCcc-------HHHHH
Confidence            9998762      1123345679999999999999987 7 599999999977666655555544311       11111


Q ss_pred             HhhcccchhhhhhhHHH-HHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          865 QLMTSNESQTIQLHDCL-ITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      ..+...   ....+..+ ..-+++++.+|+..||.+|+++.|++
T Consensus       233 ~ki~~~---~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~  273 (370)
T KOG0583|consen  233 RKIRKG---EFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEIL  273 (370)
T ss_pred             HHHhcC---CccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHh
Confidence            111111   11111112 22233477799999999999999998

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.98  E-value=2.1e-33  Score=275.94  Aligned_cols=232  Identities=24%  Similarity=0.314  Sum_probs=168.1

Q ss_pred             CCCCCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|...+++|+|.||.||+|++..+                  .....+|++.|+.++||||+.++++|...+     .+
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~-----~l   76 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKS-----NL   76 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCC-----ce
Confidence            4677889999999999999987621                  345779999999999999999999996544     38


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .+|+|||+ .+|+..++...         .++.++.+|++|+|++   .|+|||+||.|+|++++|.+||+|||+|+.+.
T Consensus        77 ~lVfEfm~-tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~---~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~  152 (318)
T KOG0659|consen   77 SLVFEFMP-TDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSK---WILHRDLKPNNLLISSDGQLKIADFGLARFFG  152 (318)
T ss_pred             EEEEEecc-ccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhh---hhhcccCCccceEEcCCCcEEeecccchhccC
Confidence            99999996 49998887543         3467899999999998   89999999999999999999999999999875


Q ss_pred             cccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHH-------------hhhcC----Cchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKW-------------VESNL----PENV  855 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~-------------~~~~~----~~~~  855 (929)
                      ....      ..+..+-|.+|+|||++.|.+ |+..+||||.||+..|+.+..-             .++.+    ++.+
T Consensus       153 ~p~~------~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~~LGTP~~~~W  226 (318)
T KOG0659|consen  153 SPNR------IQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFRALGTPTPDQW  226 (318)
T ss_pred             CCCc------ccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHHHcCCCCcccC
Confidence            3321      122226799999999988765 9999999999998766533221             11111    1111


Q ss_pred             hhc---cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          856 LQV---LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       856 ~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .++   -|-.-....+.. ....-++.+...++. ++..++..||.+|+++.|++++
T Consensus       227 P~~~~lpdY~~~~~~P~~-~~~~lf~aas~d~ld-Ll~~m~~ynP~~Rita~qaL~~  281 (318)
T KOG0659|consen  227 PEMTSLPDYVKIQQFPKP-PLNNLFPAASSDALD-LLSKMLTYNPKKRITASQALKH  281 (318)
T ss_pred             ccccccccHHHHhcCCCC-ccccccccccHHHHH-HHHhhhccCchhcccHHHHhcc
Confidence            111   111111111111 111112233344555 8889999999999999998764

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.98  E-value=3.6e-33  Score=294.66  Aligned_cols=251  Identities=23%  Similarity=0.278  Sum_probs=179.4

Q ss_pred             CCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHHc--cCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRN--VRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~--l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .....++||+|+||.||||....           +.+.|.+|-++.+.  ++|+||++++++-...... ...++||+||
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~~~~VAVKifp~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~-~~eywLVt~f  289 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLDNRLVAVKIFPEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTAD-RMEYWLVTEF  289 (534)
T ss_pred             chhhHHHhhcCccceeehhhccCceeEEEecCHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCcc-ccceeEEeee
Confidence            34456789999999999998873           45678888888776  5899999999986554433 4468999999


Q ss_pred             cCCCCcccccccc-------ccccccHHHHHHHhhhCC------CCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          729 LSNGSLGDWIHGE-------RKNELDITSALDYLHNDC------EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       729 ~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~------~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      .+.|+|.+||+..       .+++..+++||+|||+..      .|+|+|||||++|||+.+|+++.|+|||+|..+...
T Consensus       290 h~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~  369 (534)
T KOG3653|consen  290 HPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPG  369 (534)
T ss_pred             ccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCC
Confidence            9999999999743       355788999999999753      589999999999999999999999999999988654


Q ss_pred             cCCCCCccccceeccccccccccccCCCC-C-----CCCCCCCCCcCCCCCcchhHHhh--hcCCc---hhhhc--cChH
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGER-P-----STAGDVPTSESFAGEFNIVKWVE--SNLPE---NVLQV--LDPE  862 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~-----~~~~DV~s~g~~~~~~~~~~~~~--~~~~~---~~~~~--~~~~  862 (929)
                      .....    ....+||.+|||||++.+.. +     -.+.||||.|.++||+...--..  +..|+   .+.+.  .+|.
T Consensus       370 ~~~~d----~~~qVGT~RYMAPEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~~~~vp~Yqlpfe~evG~hPt  445 (534)
T KOG3653|consen  370 KPQGD----THGQVGTRRYMAPEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDADPGPVPEYQLPFEAEVGNHPT  445 (534)
T ss_pred             CCCcc----hhhhhhhhhhcCHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcccCchhHHhcCCCC
Confidence            33322    23358999999999987653 2     24689999997777653322111  22222   11111  1111


Q ss_pred             ---HHHhhcccchhhhhhhH-----HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          863 ---LRQLMTSNESQTIQLHD-----CLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       863 ---l~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                         ++..... ...++.+++     ...+++++.+..||+.||+.|-|+.=|.+++.++....+
T Consensus       446 ~e~mq~~VV~-kK~RP~~p~~W~~h~~~~~l~et~EeCWDhDaeARLTA~Cv~eR~~~l~~~~~  508 (534)
T KOG3653|consen  446 LEEMQELVVR-KKQRPKIPDAWRKHAGMAVLCETIEECWDHDAEARLTAGCVEERMAELMMLWE  508 (534)
T ss_pred             HHHHHHHHHh-hccCCCChhhhhcCccHHHHHHHHHHHcCCchhhhhhhHHHHHHHHHHhccCC
Confidence               1111111 111222211     123466668889999999999999999999988876554

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.98  E-value=1.2e-33  Score=281.55  Aligned_cols=213  Identities=23%  Similarity=0.261  Sum_probs=164.7

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||.|+||.|..++.+                   ++.+...+|..+|+.+.||+++++++.|.+     ...
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d-----~~~  118 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKD-----NSN  118 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeecc-----CCe
Confidence            46777899999999999887765                   223456689999999999999999999844     445


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||||++||.|+.++++.+        .++.+|+.|++|||+.   .|++||+||+|||+|.+|.+||+|||+|+.+.
T Consensus       119 lymvmeyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~---~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~  195 (355)
T KOG0616|consen  119 LYMVMEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSL---DIIYRDLKPENLLLDQNGHIKITDFGFAKRVS  195 (355)
T ss_pred             EEEEEeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhc---CeeeccCChHHeeeccCCcEEEEeccceEEec
Confidence            999999999999999998643        4478999999999998   99999999999999999999999999999763


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .         .+...||||.|+|||++..+.|..++|=|++|+..|||..+..++.....  .++....+.+        
T Consensus       196 ~---------rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~--~~iY~KI~~~--------  256 (355)
T KOG0616|consen  196 G---------RTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNP--IQIYEKILEG--------  256 (355)
T ss_pred             C---------cEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCCh--HHHHHHHHhC--------
Confidence            1         24567999999999999999999999999999777776554444332221  2222222221        


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCC
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGR  900 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~R  900 (929)
                      .+..+..+...+++|+...++.|-.+|
T Consensus       257 ~v~fP~~fs~~~kdLl~~LL~vD~t~R  283 (355)
T KOG0616|consen  257 KVKFPSYFSSDAKDLLKKLLQVDLTKR  283 (355)
T ss_pred             cccCCcccCHHHHHHHHHHHhhhhHhh
Confidence            112222333444456667788888888

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.98  E-value=8.4e-34  Score=303.58  Aligned_cols=223  Identities=25%  Similarity=0.347  Sum_probs=172.4

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|...+.||+|+||.||||+++.                  +.+...+|++++++++|||||.++++|.     ...++
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfE-----t~~~~   76 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFE-----TSAHL   76 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhc-----ccceE
Confidence            578888999999999999999872                  2345889999999999999999999994     44459


Q ss_pred             EEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+|.||+.| +|+.++...        +.++.++..||.|||+.   +|+|||+||.|||++..|.+|+||||+||.+..
T Consensus        77 ~vVte~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~---rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~  152 (808)
T KOG0597|consen   77 WVVTEYAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSN---RILHRDMKPQNILLEKGGTLKLCDFGLARAMST  152 (808)
T ss_pred             EEEehhhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhc---CcccccCCcceeeecCCCceeechhhhhhhccc
Confidence            999999975 999998743        34577889999999998   999999999999999999999999999998743


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                            .....+.+.|||.|||||++.+.+|+..+|.||+||++||+..+.-++...  .+.+.+.....+    ...+.
T Consensus       153 ------~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~a~--si~~Lv~~I~~d----~v~~p  220 (808)
T KOG0597|consen  153 ------NTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFYAR--SITQLVKSILKD----PVKPP  220 (808)
T ss_pred             ------CceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCchHH--HHHHHHHHHhcC----CCCCc
Confidence                  222345678999999999999999999999999999988865544332211  233322222221    22222


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....+...    +....+..||.+|.+-.+++.
T Consensus       221 ~~~S~~f~n----fl~gLL~kdP~~RltW~~Ll~  250 (808)
T KOG0597|consen  221 STASSSFVN----FLQGLLIKDPAQRLTWTDLLG  250 (808)
T ss_pred             ccccHHHHH----HHHHHhhcChhhcccHHHHhc
Confidence            223334444    444889999999999888763

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.98  E-value=3.9e-34  Score=295.18  Aligned_cols=243  Identities=22%  Similarity=0.325  Sum_probs=171.0

Q ss_pred             CCCCCceeecccCceeEEeccccCcHH------------HHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGSWK------------SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~------------~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      -.|...+++|.|+||.||+|......+            ---+|+++|++++|||||++..+|......+.-+..+||||
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlVley  103 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRYKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLVLEY  103 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCcCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHHHHh
Confidence            356778999999999999998764322            22379999999999999999998887665434567899999


Q ss_pred             cCCCCccccccc-----c-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEeccccccccccc
Q 002376          729 LSNGSLGDWIHG-----E-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLER  795 (929)
Q Consensus       729 ~~~gsL~~~l~~-----~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfGla~~~~~~  795 (929)
                      ||. +|+++++.     .       +.+..|+.+||+|||+.   +|+||||||.|+|+|.+ |.+||||||.|+.+...
T Consensus       104 mP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~  179 (364)
T KOG0658|consen  104 MPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKG  179 (364)
T ss_pred             chH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccCCCChheEEEcCCCCeEEeccCCcceeeccC
Confidence            985 89888872     1       23367999999999997   99999999999999976 89999999999987543


Q ss_pred             cCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC-------hHHHH
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD-------PELRQ  865 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~l~~  865 (929)
                      ..       .....-|..|+|||.+.|.. |+.+.||||.||++.|+..+.-.+..-..  .+.++++       .++..
T Consensus       180 ep-------niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik~lG~Pt~e~I~~  252 (364)
T KOG0658|consen  180 EP-------NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIKVLGTPTREDIKS  252 (364)
T ss_pred             CC-------ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHHHhCCCCHHHHhh
Confidence            22       12345688999999998865 99999999999988887555544332111  1111110       01110


Q ss_pred             hhcc-----------cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH--HHhhHH
Q 002376          866 LMTS-----------NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSSQE  915 (929)
Q Consensus       866 ~~~~-----------~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~~~  915 (929)
                      .-+.           ..-.+......-++.++ ++.+++..+|.+|.++.|++..  .++++.
T Consensus       253 mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~d-ll~~~L~Y~P~~R~~~~~~l~h~fFdelr~  314 (364)
T KOG0658|consen  253 MNPNYTEFKFPQIKAHPWHKVFFKRLPPDALD-LLSKLLQYSPSKRLSALEALAHPFFDELRD  314 (364)
T ss_pred             cCcccccccCcccccccceeecccCCCHHHHH-HHHHHhccChhhcCCHHHHhcchhhHHhhC
Confidence            0000           00000011112234555 8889999999999999998743  444433

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.97  E-value=1.3e-33  Score=285.27  Aligned_cols=171  Identities=26%  Similarity=0.364  Sum_probs=141.9

Q ss_pred             hCCCCCceeecccCceeEEeccccCcH------------------HHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~------------------~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .+.|+..+.|++|+||.||+|+++.+.                  -...+||.++.+++|||||.+..+....   ....
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~---~~d~  151 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGS---NMDK  151 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecc---ccce
Confidence            345677799999999999999988432                  1356999999999999999999988653   3455


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +|+|||||+. ||...++..+         ....|+++|++|||..   .|+|||+|++|+|+.+.|.+||+|||+||.+
T Consensus       152 iy~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~---wilHRDLK~SNLLm~~~G~lKiaDFGLAR~y  227 (419)
T KOG0663|consen  152 IYIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDN---WILHRDLKTSNLLLSHKGILKIADFGLAREY  227 (419)
T ss_pred             eeeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhc---eeEecccchhheeeccCCcEEecccchhhhh
Confidence            9999999976 8888776433         3367999999999998   8999999999999999999999999999987


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~  843 (929)
                      ...      ....+..+-|.+|+|||++.+.+ |+++.|+||.||++.|+..
T Consensus       228 gsp------~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~  273 (419)
T KOG0663|consen  228 GSP------LKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLT  273 (419)
T ss_pred             cCC------cccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHh
Confidence            432      22345567899999999998875 9999999999998776533

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=6.4e-33  Score=299.96  Aligned_cols=227  Identities=27%  Similarity=0.324  Sum_probs=179.3

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|...+.+|+|+||.++..+++.                  .++...+|+.++++++|||||.+.+.|...    ....
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~----~~~l   79 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEED----GQLL   79 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcC----CceE
Confidence            578888999999999998777652                  244677999999999999999999998643    2348


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++||+||+||++.+.+.+.+          .+..|++.|+.|||+.   .|+|||||+.||++..+..+|++|||+|+.+
T Consensus        80 ~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l  156 (426)
T KOG0589|consen   80 CIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHEN---RVLHRDLKCANIFLTKDKKVKLGDFGLAKIL  156 (426)
T ss_pred             EEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhh---hhhcccchhhhhhccccCceeecchhhhhhc
Confidence            99999999999999987554          2257899999999987   8999999999999999999999999999988


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ....      .....++||+.||.||++.+.+|..|+||||+||.+||+....+++.....  ...+.......+...+.
T Consensus       157 ~~~~------~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~m--~~Li~ki~~~~~~Plp~  228 (426)
T KOG0589|consen  157 NPED------SLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASNM--SELILKINRGLYSPLPS  228 (426)
T ss_pred             CCch------hhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccch--HHHHHHHhhccCCCCCc
Confidence            5432      133457899999999999999999999999999999999888888765543  11122222221111111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                         .....+..    ++..|+..+|+.||++.+++.+
T Consensus       229 ---~ys~el~~----lv~~~l~~~P~~RPsa~~LL~~  258 (426)
T KOG0589|consen  229 ---MYSSELRS----LVKSMLRKNPEHRPSALELLRR  258 (426)
T ss_pred             ---cccHHHHH----HHHHHhhcCCccCCCHHHHhhC
Confidence               11122333    6669999999999999999987

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.97  E-value=6.5e-33  Score=312.70  Aligned_cols=234  Identities=19%  Similarity=0.294  Sum_probs=168.3

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||.||+|++.                      ...+.+.+|+++++.+ +|||||+++++|...+ 
T Consensus        34 ~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~-  112 (375)
T cd05104          34 RNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGG-  112 (375)
T ss_pred             hHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC-
Confidence            447888899999999999987531                      1234678999999999 8999999999996543 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------------------------------------------
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------------------------------------------  742 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------------------------------------  742 (929)
                          ..++||||+++|+|.++++..+                                                      
T Consensus       113 ----~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (375)
T cd05104         113 ----PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRS  188 (375)
T ss_pred             ----cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccc
Confidence                3799999999999998885321                                                      


Q ss_pred             -----------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          743 -----------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       743 -----------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                                                   .++.||+.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~  265 (375)
T cd05104         189 VRSGSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHRDLAARNILLTHGRITKICDFGLARDIR  265 (375)
T ss_pred             cccceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCchhhEEEECCCcEEEecCccceecc
Confidence                                         1245899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ....    ........++..|||||++.+..++.++||||+|++++++.. ...++...+.      +............
T Consensus       266 ~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~------~~~~~~~~~~~~~  335 (375)
T cd05104         266 NDSN----YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPV------DSKFYKMIKEGYR  335 (375)
T ss_pred             Cccc----ccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCc------hHHHHHHHHhCcc
Confidence            2111    011112345678999999999999999999999988877543 2222222211      0111111111000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                        ...+.....-+++++.+||+.||++||+|+||+++|++.
T Consensus       336 --~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~l~~~  374 (375)
T cd05104         336 --MLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQLIEQQ  374 (375)
T ss_pred             --CCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHhh
Confidence              000011112233488899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.97  E-value=3.7e-33  Score=299.67  Aligned_cols=237  Identities=24%  Similarity=0.335  Sum_probs=177.7

Q ss_pred             CCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .....++||+|-||+|..+...+                ..++|.+|+++|.+++|||||+++|+|...++     +++|
T Consensus       539 ~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DeP-----icmI  613 (807)
T KOG1094|consen  539 RLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDP-----LCMI  613 (807)
T ss_pred             heehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCc-----hHHH
Confidence            44556899999999998765431                35789999999999999999999999987665     8999


Q ss_pred             EEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +|||++|+|.+|+.+..          .++.|||.||+||.+.   ++||||+.++|+|+|.++++||+|||++|-+...
T Consensus       614 ~EYmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~---nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg  690 (807)
T KOG1094|consen  614 TEYMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESL---NFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG  690 (807)
T ss_pred             HHHHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhh---chhhccccccceeecCcccEEecCcccccccccC
Confidence            99999999999986431          3478999999999998   9999999999999999999999999999965322


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchh-
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQ-  873 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~-  873 (929)
                          .........+-..+|||||.+.-+++++++|||+||+++||+...- -...+.+ .-.++++ ...+.+...... 
T Consensus       691 ----~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C-~e~Py~~lt~e~vve-n~~~~~~~~~~~~  764 (807)
T KOG1094|consen  691 ----DYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLC-REQPYSQLTDEQVVE-NAGEFFRDQGRQV  764 (807)
T ss_pred             ----CceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHH-hhCchhhhhHHHHHH-hhhhhcCCCCcce
Confidence                1111223345678999999999999999999999999888853221 1112222 1112222 112222211111 


Q ss_pred             -hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          874 -TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       874 -~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                       .....-|..++++ ++.+||.+|.++||+++++...|++.
T Consensus       765 ~l~~P~~cp~~lye-lml~Cw~~es~~RPsFe~lh~~lq~~  804 (807)
T KOG1094|consen  765 VLSRPPACPQGLYE-LMLRCWRRESEQRPSFEQLHLFLQED  804 (807)
T ss_pred             eccCCCcCcHHHHH-HHHHHhchhhhcCCCHHHHHHHHHHh
Confidence             1111235566776 99999999999999999999888764

>PHA02988 hypothetical protein; Provisional

Probab=99.97  E-value=2.5e-32  Score=296.08  Aligned_cols=241  Identities=18%  Similarity=0.160  Sum_probs=176.1

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEeccccC--------------c---HHHHHHHHHHHHccCCccccceeeecc
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERTG--------------S---WKSFIAECETLRNVRHRNLVKLITSCS  712 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~---~~~~~~E~~~l~~l~Hpniv~l~~~~~  712 (929)
                      .++.+++..     .....||+|++|.||+|++.+              .   .+.|.+|+.++++++|||||+++|++.
T Consensus        14 ~i~~~~i~~-----~~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~   88 (283)
T PHA02988         14 CIESDDIDK-----YTSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFII   88 (283)
T ss_pred             ecCHHHcCC-----CCCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEE
Confidence            455666633     223689999999999998752              1   356779999999999999999999986


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      +.. ......++||||+++|+|.++++..+        .++.+++.|++|||+..  +++||||||+||++++++.+||+
T Consensus        89 ~~~-~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hrdlkp~nill~~~~~~kl~  165 (283)
T PHA02988         89 DIV-DDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYT--NKPYKNLTSVSFLVTENYKLKII  165 (283)
T ss_pred             ecc-cCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcC--CCCCCcCChhhEEECCCCcEEEc
Confidence            521 12345799999999999999987543        23578999999999742  68899999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPE  862 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (929)
                      |||+++.+...         .....|+..|+|||++.+  ..++.++||||+|+++|++..+..++.....  .++.+..
T Consensus       166 dfg~~~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~~--~~~~~~i  234 (283)
T PHA02988        166 CHGLEKILSSP---------PFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLTT--KEIYDLI  234 (283)
T ss_pred             ccchHhhhccc---------cccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCCH--HHHHHHH
Confidence            99999865311         122468899999999976  6799999999999888887665555443321  1111111


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ...    ...  ...+......+++++.+||+.||++||||+|+++.|++...
T Consensus       235 ~~~----~~~--~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~~l~~~~~  281 (283)
T PHA02988        235 INK----NNS--LKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILYNLSLYKF  281 (283)
T ss_pred             Hhc----CCC--CCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHHHHHHHHh
Confidence            111    000  11110112234448889999999999999999999998754

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=6.2e-33  Score=303.36  Aligned_cols=224  Identities=23%  Similarity=0.296  Sum_probs=175.2

Q ss_pred             CCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +-|+.++.||+|+-|.|-.|++..+                   ...+.+|+.+|+-+.||||+++++++.     +..+
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe-----~~~~   86 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWE-----NKQH   86 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeec-----cCce
Confidence            4577789999999999988876521                   345779999999999999999999994     4556


Q ss_pred             EEEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+|.||+++|.|++++-.        +.++..||..|+.|+|+.   +|+|||+||+|+|+|.+..+||+|||+|..-.
T Consensus        87 lylvlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~---~icHRDLKpENlLLd~~~nIKIADFGMAsLe~  163 (786)
T KOG0588|consen   87 LYLVLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAF---NICHRDLKPENLLLDVKNNIKIADFGMASLEV  163 (786)
T ss_pred             EEEEEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhh---cceeccCCchhhhhhcccCEeeeccceeeccc
Confidence            9999999999999999853        335578999999999998   89999999999999999999999999997532


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                             .......-||++.|.|||+++|.+| +.++||||.|+++|.+.++.+++.          |..++..+.+-..
T Consensus       164 -------~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFd----------DdNir~LLlKV~~  226 (786)
T KOG0588|consen  164 -------PGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFD----------DDNIRVLLLKVQR  226 (786)
T ss_pred             -------CCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCC----------CccHHHHHHHHHc
Confidence                   2223445699999999999999998 899999999987776655555544          2222222222111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...+.+..++.-+++|..+++..||++|.|++||.+-
T Consensus       227 G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kH  263 (786)
T KOG0588|consen  227 GVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKH  263 (786)
T ss_pred             CcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhC
Confidence            1122223445556668889999999999999999863

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.3e-32  Score=299.54  Aligned_cols=221  Identities=22%  Similarity=0.318  Sum_probs=174.6

Q ss_pred             eeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecC
Q 002376          667 NLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS  730 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~  730 (929)
                      -++|+|.||+||.|++..                ..+-...|+..-++++|.|||+++|.|.     ..+++-+.||-+|
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~s-----enGf~kIFMEqVP  655 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVS-----ENGFFKIFMEQVP  655 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccC-----CCCeEEEEeecCC
Confidence            479999999999998762                2234668999999999999999999984     3446889999999


Q ss_pred             CCCcccccccc-----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEeccccccccccccCC
Q 002376          731 NGSLGDWIHGE-----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       731 ~gsL~~~l~~~-----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+|.+.++..           ..+..||++||.|||.+   .|||||||-.||||+ -.|.+||+|||.++.+..    
T Consensus       656 GGSLSsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen---~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAg----  728 (1226)
T KOG4279|consen  656 GGSLSSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHEN---KIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAG----  728 (1226)
T ss_pred             CCcHHHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhc---ceeeccccCCcEEEeeccceEEecccccchhhcc----
Confidence            99999998732           13367999999999998   899999999999996 578999999999987632    


Q ss_pred             CCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                        -...+..+.||..|||||++..++  |+.++|||||||...||.++.-++..+......++.-.+..       ..++
T Consensus       729 --inP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyK-------vHP~  799 (1226)
T KOG4279|consen  729 --INPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYK-------VHPP  799 (1226)
T ss_pred             --CCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhccee-------cCCC
Confidence              112345678999999999998775  89999999999999888777766655544322222222222       1233


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .++.+.+-.+.++.+|..+||.+||++.++++
T Consensus       800 iPeelsaeak~FilrcFepd~~~R~sA~~LL~  831 (1226)
T KOG4279|consen  800 IPEELSAEAKNFILRCFEPDPCDRPSAKDLLQ  831 (1226)
T ss_pred             CcHHHHHHHHHHHHHHcCCCcccCccHHHhcc
Confidence            44556666666888999999999999999875

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.97  E-value=2.4e-32  Score=296.90  Aligned_cols=245  Identities=22%  Similarity=0.248  Sum_probs=174.6

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .|+..+.||+|+||+||++....                   ....+.+|+.++++++||+|+++.+++.+.     ...
T Consensus         1 ~f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~-----~~~   75 (285)
T cd05631           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETK-----DAL   75 (285)
T ss_pred             CceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccC-----CeE
Confidence            36778999999999999987541                   123467899999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++||||+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++..
T Consensus        76 ~lv~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~  152 (285)
T cd05631          76 CLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRE---RIVYRDLKPENILLDDRGHIRISDLGLAVQI  152 (285)
T ss_pred             EEEEEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeCCCcEEc
Confidence            99999999999987764221          2357899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       .......||..|||||++.+..++.++||||+|++++++..+..++..... ...+.++..+...   ..
T Consensus       153 ~~~-------~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~---~~  222 (285)
T cd05631         153 PEG-------ETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRVKED---QE  222 (285)
T ss_pred             CCC-------CeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHhhcc---cc
Confidence            321       112234789999999999999999999999999888776555444432221 1111111111110   00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH--HHHhhHHHHhhcc--CCCCCCC
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR--RLKSSQEILLKQQ--VPNGKTK  928 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~--~L~~~~~~~~~~~--~p~~~~~  928 (929)
                      .    ....+...+.+++.+||+.||++||+     ++|+++  .++++........  .|+-.|.
T Consensus       223 ~----~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~  284 (285)
T cd05631         223 E----YSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFKRLEANMLEPPFCPD  284 (285)
T ss_pred             c----CCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHHHHHhCcCCcCCCCC
Confidence            0    11112223334777999999999997     788876  3566544433232  4555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.5e-32  Score=300.55  Aligned_cols=222  Identities=21%  Similarity=0.354  Sum_probs=166.6

Q ss_pred             ceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          666 ENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      ..+||+|+|-+||||-+.                    ...++|..|+.+|+.++|||||+++.++.+...   ..+.+|
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n---~~in~i  121 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDN---KTINFI  121 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCC---ceeeee
Confidence            467999999999999876                    124689999999999999999999999987543   557899


Q ss_pred             EEecCCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~~~~~~  796 (929)
                      +|.|..|+|..|.++.++        ++.||++||.|||++ .|+|||||||..||+|+. .|.|||+|.|+|..+..  
T Consensus       122 TEL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~-~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~--  198 (632)
T KOG0584|consen  122 TELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRK--  198 (632)
T ss_pred             eecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcC-CCCccccccccceEEEcCCcCceeecchhHHHHhhc--
Confidence            999999999999986553        378999999999997 689999999999999974 57999999999997632  


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            .....++|||.|||||++. ..|.+.+|||||||.+.||.+.++++..=.. ..++...-..+..+.. -..+.
T Consensus       199 ------s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC~n-~AQIYKKV~SGiKP~s-l~kV~  269 (632)
T KOG0584|consen  199 ------SHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSECTN-PAQIYKKVTSGIKPAA-LSKVK  269 (632)
T ss_pred             ------cccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhhCC-HHHHHHHHHcCCCHHH-hhccC
Confidence                  2234479999999999986 7899999999999777666655554432111 1111111111100000 00000


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          -++ +++++.+|+.. .++|||+.|++.
T Consensus       270 ----dPe-vr~fIekCl~~-~~~R~sa~eLL~  295 (632)
T KOG0584|consen  270 ----DPE-VREFIEKCLAT-KSERLSAKELLK  295 (632)
T ss_pred             ----CHH-HHHHHHHHhcC-chhccCHHHHhh
Confidence                011 22377799999 999999999875

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.97  E-value=7.9e-33  Score=267.72  Aligned_cols=228  Identities=25%  Similarity=0.282  Sum_probs=166.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++.|+.-+.||+|+|+.||++....                  +.++..+|+++.+.++|||||++.+.+.     ...+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~-----~~~~   84 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQ-----EESF   84 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhc-----ccce
Confidence            4577778899999999999877652                  3456778999999999999999999874     3456


Q ss_pred             EEEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~  790 (929)
                      .|+|+|+|.||+|..-+-.        ..+...||+.||.|+|.+   +|||||+||+|+++..   .--+|++|||+|.
T Consensus        85 ~ylvFe~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n---~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi  161 (355)
T KOG0033|consen   85 HYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSN---GIVHRDLKPENLLLASKAKGAAVKLADFGLAI  161 (355)
T ss_pred             eEEEEecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CceeccCChhheeeeeccCCCceeecccceEE
Confidence            8999999999999654321        123467999999999999   9999999999999953   2368999999999


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .+.       .......++|||+|||||+++..+|+..+|||+.|+++|-+..+..++..-.  ...+......+.+...
T Consensus       162 ~l~-------~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~--~~rlye~I~~g~yd~~  232 (355)
T KOG0033|consen  162 EVN-------DGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDED--QHRLYEQIKAGAYDYP  232 (355)
T ss_pred             EeC-------CccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCcc--HHHHHHHHhccccCCC
Confidence            774       2234456799999999999999999999999999976654433332222111  1111111111111111


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    +.++-+.+-.++++++|+..||++|.|+.|++.
T Consensus       233 ~----~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~  266 (355)
T KOG0033|consen  233 S----PEWDTVTPEAKSLIRRMLTVNPKKRITADEALK  266 (355)
T ss_pred             C----cccCcCCHHHHHHHHHHhccChhhhccHHHHhC
Confidence            2    122233344455777999999999999999763

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=1.4e-32  Score=309.59  Aligned_cols=236  Identities=18%  Similarity=0.282  Sum_probs=169.4

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLD  715 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~  715 (929)
                      ..++|+..+.||+|+||.||+++..                      ...+.+.+|+++++.+ +|||||+++++|....
T Consensus        36 ~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~~  115 (374)
T cd05106          36 PRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHGG  115 (374)
T ss_pred             cHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCCC
Confidence            3457888999999999999987531                      0134578999999999 8999999999986543


Q ss_pred             CCCcceEEEEEEecCCCCcccccccc------------------------------------------------------
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGE------------------------------------------------------  741 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~------------------------------------------------------  741 (929)
                           ..++||||+++|+|.++++..                                                      
T Consensus       116 -----~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (374)
T cd05106         116 -----PVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSS  190 (374)
T ss_pred             -----CeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccc
Confidence                 489999999999999887531                                                      


Q ss_pred             ------------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          742 ------------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       742 ------------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                                              ..++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+.....
T Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~  267 (374)
T cd05106         191 SSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSN  267 (374)
T ss_pred             ccccccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEeccCchheEEEeCCCeEEEeeceeeeeccCCcc
Confidence                                    12346899999999998   999999999999999999999999999986532110


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                          ........++..|||||++.+..++.++||||+|++++++.. ...++.....      +............  ..
T Consensus       268 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~------~~~~~~~~~~~~~--~~  335 (374)
T cd05106         268 ----YVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILV------NSKFYKMVKRGYQ--MS  335 (374)
T ss_pred             ----eeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccc------cHHHHHHHHcccC--cc
Confidence                011112235678999999999999999999999988777543 3332221111      1111111111000  00


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      .+...+.-+.+++.+||+.||++||++.||+++|+++.
T Consensus       336 ~~~~~~~~l~~li~~cl~~dp~~RPs~~~l~~~l~~~~  373 (374)
T cd05106         336 RPDFAPPEIYSIMKMCWNLEPTERPTFSQISQLIQRQL  373 (374)
T ss_pred             CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHh
Confidence            00111122334777999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.97  E-value=7.4e-33  Score=298.72  Aligned_cols=232  Identities=24%  Similarity=0.316  Sum_probs=177.9

Q ss_pred             CCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .....++||+|-||.||+|.+.                     .+.+.|..|..+|+.++|||||+++|+|.+..     
T Consensus       390 ~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P-----  464 (974)
T KOG4257|consen  390 LITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQP-----  464 (974)
T ss_pred             hccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccc-----
Confidence            3445688999999999998765                     23578999999999999999999999996532     


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                       .|+|||.++.|.|..|++..+         .++.||+.||+|||+.   .+|||||.++|||+.....+|++|||++|.
T Consensus       465 -~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSk---rfVHRDIAaRNiLVsSp~CVKLaDFGLSR~  540 (974)
T KOG4257|consen  465 -MWIVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESK---RFVHRDIAARNILVSSPQCVKLADFGLSRY  540 (974)
T ss_pred             -eeEEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh---chhhhhhhhhheeecCcceeeecccchhhh
Confidence             799999999999999998544         2367999999999998   899999999999999999999999999998


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      +...     .....+...-...|||||.+--++++.++|||-||+.+||+..    .+.-|.  ..+-...+...+..+ 
T Consensus       541 ~ed~-----~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~----lGvkPf--qgvkNsDVI~~iEnG-  608 (974)
T KOG4257|consen  541 LEDD-----AYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILS----LGVKPF--QGVKNSDVIGHIENG-  608 (974)
T ss_pred             cccc-----chhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHH----hcCCcc--ccccccceEEEecCC-
Confidence            7422     1122223345678999999999999999999999988877421    222222  111111111111111 


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      +.-+-.+.|.+.++. ++.+||+.||.+||++.|+...|.++.+
T Consensus       609 eRlP~P~nCPp~LYs-lmskcWayeP~kRPrftei~~~lsdv~q  651 (974)
T KOG4257|consen  609 ERLPCPPNCPPALYS-LMSKCWAYEPSKRPRFTEIKAILSDVLQ  651 (974)
T ss_pred             CCCCCCCCCChHHHH-HHHHHhccCcccCCcHHHHHHHHHHHHH
Confidence            111222356666665 9999999999999999999999999877

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.97  E-value=1.9e-32  Score=281.87  Aligned_cols=222  Identities=23%  Similarity=0.289  Sum_probs=168.9

Q ss_pred             CCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +|++.+.+|+|.||+|-++...                   ++...+.+|+++|+.++||||++++.+|     ++...+
T Consensus        54 RyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVF-----ENkdKI  128 (668)
T KOG0611|consen   54 RYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVF-----ENKDKI  128 (668)
T ss_pred             HHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhh-----cCCceE
Confidence            5777789999999999877653                   2234577999999999999999999999     445569


Q ss_pred             EEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      .+||||..+|.|+||+.+        .|++..||..|+.|+|.+   +++|||+|.+|||+|.++.+||+|||++..+..
T Consensus       129 vivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHkn---rVvHRDLKLENILLD~N~NiKIADFGLSNly~~  205 (668)
T KOG0611|consen  129 VIVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKN---RVVHRDLKLENILLDQNNNIKIADFGLSNLYAD  205 (668)
T ss_pred             EEEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhc---cceecccchhheeecCCCCeeeeccchhhhhcc
Confidence            999999999999999974        346688999999999998   999999999999999999999999999987642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .       ...+.+||++-|.+||++-|.+| +..+|-||+|+.+|.+..+.+++.....  .     .+...+......
T Consensus       206 ~-------kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dh--k-----~lvrQIs~GaYr  271 (668)
T KOG0611|consen  206 K-------KFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDH--K-----RLVRQISRGAYR  271 (668)
T ss_pred             c-------cHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchH--H-----HHHHHhhccccc
Confidence            2       34567899999999999999988 7899999999665554433333332222  1     111111111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .+..+....   . ++++++..+|++|.|+.+|...
T Consensus       272 EP~~PSdA~---g-LIRwmLmVNP~RRATieDiAsH  303 (668)
T KOG0611|consen  272 EPETPSDAS---G-LIRWMLMVNPERRATIEDIASH  303 (668)
T ss_pred             CCCCCchHH---H-HHHHHHhcCcccchhHHHHhhh
Confidence            111111122   2 6669999999999999998743

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=6.9e-33  Score=268.53  Aligned_cols=224  Identities=20%  Similarity=0.288  Sum_probs=175.1

Q ss_pred             hhCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.++|+.++.+|+|-||.||.|+.+                   +...++.+|+++-+.++||||++++++|.+..    
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~----   95 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSK----   95 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccc----
Confidence            3467889999999999999999876                   23567889999999999999999999996543    


Q ss_pred             ceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                       .+|+++||.+.|+++..|.+.+          .+..|+|.|+.|+|..   +||||||||+|+|++..+..||+|||-+
T Consensus        96 -riyLilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhRdiKpenlLlg~~~~lkiAdfGws  171 (281)
T KOG0580|consen   96 -RIYLILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLK---RVIHRDIKPENLLLGSAGELKIADFGWS  171 (281)
T ss_pred             -eeEEEEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccC---CcccCCCCHHHhccCCCCCeeccCCCce
Confidence             4899999999999999987332          2357899999999997   8999999999999999999999999987


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ..-+        ....+..+||.-|.|||...+..++.++|+|+.|+..||+.++.-++..-..      +...+.....
T Consensus       172 V~~p--------~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~~~------~etYkrI~k~  237 (281)
T KOG0580|consen  172 VHAP--------SNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQSH------SETYKRIRKV  237 (281)
T ss_pred             eecC--------CCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhhhh------HHHHHHHHHc
Confidence            5421        2234567999999999999999999999999999888876555444432221      1111111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          +...+..+..-+++++.+|+..+|.+|.+..|+++
T Consensus       238 ----~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~  272 (281)
T KOG0580|consen  238 ----DLKFPSTISGGAADLISRLLVKNPIERLALTEVMD  272 (281)
T ss_pred             ----cccCCcccChhHHHHHHHHhccCccccccHHHHhh
Confidence                11111234445556888999999999999999875

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=5.3e-32  Score=300.59  Aligned_cols=174  Identities=23%  Similarity=0.362  Sum_probs=144.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+++...                 ..+.+.+|++++++++||||+++++++...     ...
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~   78 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-----GEI   78 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEEC-----CEE
Confidence            3688999999999999999987651                 134688999999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||+++|+|.+++....        .++.+++.||+|||+.+  +|+||||||+||++++++.+||+|||+++....
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  156 (331)
T cd06649          79 SICMEHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKH--QIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (331)
T ss_pred             EEEeecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcC--CEEcCCCChhhEEEcCCCcEEEccCcccccccc
Confidence            99999999999999986433        33678999999999852  699999999999999999999999999876532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .        ......||+.|+|||++.+..++.++||||+|++++++.++..++
T Consensus       157 ~--------~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~  202 (331)
T cd06649         157 S--------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPI  202 (331)
T ss_pred             c--------ccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence            1        122347899999999999999999999999999888876555443

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.97  E-value=1.6e-31  Score=295.59  Aligned_cols=218  Identities=25%  Similarity=0.295  Sum_probs=161.9

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +.||+|+||.||+++...                   ....+.+|+.++++++||||+++++++..     ....|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~-----~~~~~lv~e   75 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQT-----HDRLCFVME   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEc-----CCEEEEEEe
Confidence            469999999999887541                   12356789999999999999999998854     345899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++....     
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~-----  147 (323)
T cd05571          76 YANGGELFFHLSRERVFSEDRARFYGAEIVSALGYLHSC---DVVYRDLKLENLMLDKDGHIKITDFGLCKEGIS-----  147 (323)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEeeCCCCccccc-----
Confidence            999999998886432        2357999999999998   999999999999999999999999999875321     


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                       ........+||+.|||||++.+..++.++||||+|++++++.++..++.....  .+....    .........    .
T Consensus       148 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~----~~~~~~~~p----~  216 (323)
T cd05571         148 -DGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFEL----ILMEEIRFP----R  216 (323)
T ss_pred             -CCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCH--HHHHHH----HHcCCCCCC----C
Confidence             11122345799999999999999999999999999999987665544432211  111100    000111111    1


Q ss_pred             HHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      .+..-+++++.+|++.||++||     ++.|+++
T Consensus       217 ~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~  250 (323)
T cd05571         217 TLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIME  250 (323)
T ss_pred             CCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHc
Confidence            1222233477799999999999     7888864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=5.1e-32  Score=279.05  Aligned_cols=241  Identities=24%  Similarity=0.307  Sum_probs=176.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ....|...+.||+|+||.|+.+..+.                  ..++-.+|++++++++|+||+.+.+++.......-.
T Consensus        20 i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~   99 (359)
T KOG0660|consen   20 IPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFN   99 (359)
T ss_pred             ccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccccc
Confidence            34456667899999999999887662                  234566899999999999999999998774444556


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .+|+|+|+| ..+|.+.++..+        ....|+++||.|+|+.   +|+|||+||+|++++.+...||+|||+||..
T Consensus       100 DvYiV~elM-etDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSA---nViHRDLKPsNll~n~~c~lKI~DFGLAR~~  175 (359)
T KOG0660|consen  100 DVYLVFELM-ETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSA---NVIHRDLKPSNLLLNADCDLKICDFGLARYL  175 (359)
T ss_pred             eeEEehhHH-hhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcc---cccccccchhheeeccCCCEEeccccceeec
Confidence            799999999 569999887544        3367999999999998   9999999999999999999999999999987


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcC---------------Cc--h
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNL---------------PE--N  854 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~---------------~~--~  854 (929)
                      ...    ......+..+.|.+|+|||++... .|+.+.||||.||++.|+....-.+..-               |+  .
T Consensus       176 ~~~----~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI~~~lGtP~~e~  251 (359)
T KOG0660|consen  176 DKF----FEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLILELLGTPSEED  251 (359)
T ss_pred             ccc----CcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHHHHhcCCCCHHH
Confidence            432    222344667889999999987654 5999999999999887765544332211               11  2


Q ss_pred             hhhccChHHHHhhcccchhh-hh----hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 VLQVLDPELRQLMTSNESQT-IQ----LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~-~~----~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...+-....+..+...+... .+    ++..-+.++. +..+++..||.+|+|++|+++
T Consensus       252 l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~Aid-LlekmL~fdP~kRita~eAL~  309 (359)
T KOG0660|consen  252 LQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAID-LLEKMLVFDPKKRITAEEALA  309 (359)
T ss_pred             HHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHH-HHHHHhccCccccCCHHHHhc
Confidence            22222233333222211111 11    1112233454 788999999999999999875

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.97  E-value=2.4e-32  Score=293.79  Aligned_cols=231  Identities=19%  Similarity=0.229  Sum_probs=167.3

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|++.                    ...+.|.+|+.++++++||||+++++++...     .
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~   79 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRG-----N   79 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecC-----C
Confidence            46788899999999999998542                    1134688999999999999999999998643     3


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++....         .++.|++.|++|||+.   +++||||||+||+++.++.+|++|||.+..
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~iiH~dikp~nili~~~~~~~l~dfg~~~~  156 (266)
T cd05064          80 TMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEM---GYVHKGLAAHKVLVNSDLVCKISGFRRLQE  156 (266)
T ss_pred             CcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeeccccHhhEEEcCCCcEEECCCccccc
Confidence            4899999999999999886421         2357899999999998   999999999999999999999999998764


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ....     .........++..|+|||++.+..++.++||||+|++++++.. ...++.....       ..+.......
T Consensus       157 ~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~p~~~~~~-------~~~~~~~~~~  224 (266)
T cd05064         157 DKSE-----AIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYGERPYWDMSG-------QDVIKAVEDG  224 (266)
T ss_pred             cccc-----chhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCCCCCcCcCCH-------HHHHHHHHCC
Confidence            3111     0111112345678999999999999999999999988777422 3222221111       1111111110


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ..  ...+...+..+.+++.+||+.+|++||+++|+.+.|+++
T Consensus       225 ~~--~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~~l~~~  265 (266)
T cd05064         225 FR--LPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHSILSKM  265 (266)
T ss_pred             CC--CCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHHHHHhh
Confidence            00  000111222333477899999999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-32  Score=265.45  Aligned_cols=244  Identities=19%  Similarity=0.188  Sum_probs=178.0

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ..++|.+.+.+|+|||.-||.++..                .+.+..++|++..++++||||+++++++...........
T Consensus        19 n~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~   98 (302)
T KOG2345|consen   19 NNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEA   98 (302)
T ss_pred             cCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeE
Confidence            3468889999999999999987732                346678899999999999999999999987666567789


Q ss_pred             EEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      |++++|...|+|.+.+....            .+..+|++||++||+. .+++.||||||.|||+.+.+.+++.|||.+.
T Consensus        99 yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~DiKP~NILls~~~~~vl~D~GS~~  177 (302)
T KOG2345|consen   99 YLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHRDIKPANILLSDSGLPVLMDLGSAT  177 (302)
T ss_pred             EEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhcc-CCcccccCCCcceeEecCCCceEEEeccCcc
Confidence            99999999999999886322            3367899999999997 4579999999999999999999999999988


Q ss_pred             ccccccCCCCCcc---ccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhh-hccC
Q 002376          791 FLLERVDNQSSIS---STHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPE---NVL-QVLD  860 (929)
Q Consensus       791 ~~~~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~-~~~~  860 (929)
                      ...-.........   ......-|..|+|||.+.-+   ..++++||||+||++|++....-++...-+   .+. .+..
T Consensus       178 ~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n  257 (302)
T KOG2345|consen  178 QAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQN  257 (302)
T ss_pred             ccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeec
Confidence            6543222211111   11122458899999987543   479999999999887776544444332211   110 0111


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      +.+.  .+    .....    ++.+.+++..|++.||.+||++.|++..++++
T Consensus       258 ~q~s--~P----~~~~y----se~l~~lik~mlqvdP~qRP~i~~ll~~~d~L  300 (302)
T KOG2345|consen  258 AQIS--IP----NSSRY----SEALHQLIKSMLQVDPNQRPTIPELLSKLDDL  300 (302)
T ss_pred             cccc--cC----CCCCc----cHHHHHHHHHHhcCCcccCCCHHHHHHHHHhh
Confidence            1111  01    11112    23333366699999999999999999998875

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.97  E-value=3.8e-32  Score=292.16  Aligned_cols=233  Identities=21%  Similarity=0.257  Sum_probs=171.3

Q ss_pred             HhhCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ...++|+....||+|+||.||.|+.+                   ++.+....|-.+|...++|+||+++..|     ++
T Consensus       138 ~~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsF-----QD  212 (550)
T KOG0605|consen  138 LSLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSF-----QD  212 (550)
T ss_pred             CCcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEe-----cC
Confidence            35678999999999999999998765                   2355677899999999999999999998     44


Q ss_pred             cceEEEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      .+++||||||++||++..+|..        .+.++.+.+.|++.+|+.   |+|||||||+|+|||..|++|++|||++.
T Consensus       213 ~~~LYLiMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~---gyIHRDIKPdNlLiD~~GHiKLSDFGLs~  289 (550)
T KOG0605|consen  213 KEYLYLIMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQL---GYIHRDIKPDNLLIDAKGHIKLSDFGLST  289 (550)
T ss_pred             CCeeEEEEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHc---CcccccCChhheeecCCCCEeeccccccc
Confidence            5569999999999999988863        334566788899999998   99999999999999999999999999996


Q ss_pred             cccccc-------------------CC-CCC---c------------------cccceeccccccccccccCCCCCCCCC
Q 002376          791 FLLERV-------------------DN-QSS---I------------------SSTHVFMGSIGYVPPEYGLGERPSTAG  829 (929)
Q Consensus       791 ~~~~~~-------------------~~-~~~---~------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~  829 (929)
                      -+....                   .. ...   .                  .....++|||-|||||++.+..|+..+
T Consensus       290 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~c  369 (550)
T KOG0605|consen  290 GLDKKHRIESYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKEC  369 (550)
T ss_pred             hhhhhhhhhhhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccc
Confidence            432100                   00 000   0                  011245899999999999999999999


Q ss_pred             CCCCCcCCCCCcchhHHhhhcC-Cc-hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC---HH
Q 002376          830 DVPTSESFAGEFNIVKWVESNL-PE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG---IR  904 (929)
Q Consensus       830 DV~s~g~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~  904 (929)
                      |-||+||++||+.++.-++..- |. ....++..+..-..+.+...        ..-..|++.+|+. ||++|-.   +.
T Consensus       370 DwWSLG~ImyEmLvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~~~--------s~eA~DLI~rll~-d~~~RLG~~G~~  440 (550)
T KOG0605|consen  370 DWWSLGCIMYEMLVGYPPFCSETPQETYRKIVNWRETLKFPEEVDL--------SDEAKDLITRLLC-DPENRLGSKGAE  440 (550)
T ss_pred             cHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhhccCCCcCcc--------cHHHHHHHHHHhc-CHHHhcCcccHH
Confidence            9999999999986655444322 22 23333333222111221111        1222347779888 9999975   45


Q ss_pred             HHH
Q 002376          905 EAL  907 (929)
Q Consensus       905 ev~  907 (929)
                      ||-
T Consensus       441 EIK  443 (550)
T KOG0605|consen  441 EIK  443 (550)
T ss_pred             HHh
Confidence            543

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.97  E-value=9.5e-32  Score=296.77  Aligned_cols=235  Identities=20%  Similarity=0.283  Sum_probs=172.4

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+|+..+.||+|+||.||+|.+.                     ...++|.+|+.+++.++||||++++|+|...     
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-----   81 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-----   81 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-----
Confidence            36888999999999999998642                     1135688899999999999999999998642     


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                       ..++|+||+++|+|.++++...         .++.||+.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        82 -~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~dlkp~Nill~~~~~~kl~DfG~a~  157 (316)
T cd05108          82 -TVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEER---RLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (316)
T ss_pred             -CceeeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhc---CeeccccchhheEecCCCcEEEccccccc
Confidence             2589999999999999887432         2367999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .+.....    ........++..|||||++.+..++.++||||+|+++|++.. ...++...+.       ..+......
T Consensus       158 ~~~~~~~----~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~~~-------~~~~~~~~~  226 (316)
T cd05108         158 LLGADEK----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA-------SEISSILEK  226 (316)
T ss_pred             cccCCCc----ceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH-------HHHHHHHhC
Confidence            7642211    011112234678999999999999999999999988777533 2222221111       111111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .... +....+...+.+ ++.+||+.+|++||++.+++..+.++.+..
T Consensus       227 ~~~~-~~~~~~~~~~~~-li~~cl~~~p~~Rps~~~l~~~l~~~~~~~  272 (316)
T cd05108         227 GERL-PQPPICTIDVYM-IMVKCWMIDADSRPKFRELIIEFSKMARDP  272 (316)
T ss_pred             CCCC-CCCCCCCHHHHH-HHHHHccCChhhCcCHHHHHHHHHHHHcCC
Confidence            1000 001112233444 888999999999999999999999887653

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.97  E-value=5.8e-32  Score=299.87  Aligned_cols=220  Identities=22%  Similarity=0.304  Sum_probs=165.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|+...                   ..+.+.+|++++++++||||+++++++...     ..
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~   92 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDE-----NR   92 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcC-----CE
Confidence            578889999999999999987652                   124578899999999999999999998543     35


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus        93 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~  169 (329)
T PTZ00263         93 VYFLLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSK---DIIYRDLKPENLLLDNKGHVKVTDFGFAKKVP  169 (329)
T ss_pred             EEEEEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEECCCCCEEEeeccCceEcC
Confidence            899999999999999886433        2356899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..         .....||+.|||||++.+..++.++||||+|+++|++..+..++.....  .+..    ........  
T Consensus       170 ~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~----~~i~~~~~--  232 (329)
T PTZ00263        170 DR---------TFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTP--FRIY----EKILAGRL--  232 (329)
T ss_pred             CC---------cceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCH--HHHH----HHHhcCCc--
Confidence            21         1235799999999999999999999999999888776554444322111  0100    00000000  


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREAL  907 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~  907 (929)
                        ..+..+...+++++.+||+.||++||+     ++|++
T Consensus       233 --~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll  269 (329)
T PTZ00263        233 --KFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVK  269 (329)
T ss_pred             --CCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHh
Confidence              011112223344777999999999997     57766

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=9.3e-32  Score=297.08  Aligned_cols=221  Identities=25%  Similarity=0.317  Sum_probs=172.7

Q ss_pred             hhCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|...++||+|.||+|+.+..+                   .+.+..+.|.+++... +||.+++++.+|     ++
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~f-----QT  440 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCF-----QT  440 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeeccccc-----cc
Confidence            3468889999999999999988765                   2356677888888877 599999999998     45


Q ss_pred             cceEEEEEEecCCCCccccccc-------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHG-------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~-------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++|+||||+.||++..+.+.       .+.++..|+.||+|||++   +||+||||-+|||+|.+|.+||+|||++|.
T Consensus       441 ~~~l~fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~---~IIYRDlKLdNiLLD~eGh~kiADFGlcKe  517 (694)
T KOG0694|consen  441 KEHLFFVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHEN---GIIYRDLKLDNLLLDTEGHVKIADFGLCKE  517 (694)
T ss_pred             CCeEEEEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhc---CceeeecchhheEEcccCcEEecccccccc
Confidence            5669999999999997776652       345578999999999999   999999999999999999999999999985


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ..      .....+..++||+.|||||++.+..|+.++|=|++|+.+|||.+++-++..-.  -.+++|..+.+    +.
T Consensus       518 ~m------~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gdd--Eee~FdsI~~d----~~  585 (694)
T KOG0694|consen  518 GM------GQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDD--EEEVFDSIVND----EV  585 (694)
T ss_pred             cC------CCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHhcC----CC
Confidence            31      12335667899999999999999999999999999998888877665554332  33444444332    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      ..+...   -.+.+. |+.+.+..+|++|--+
T Consensus       586 ~yP~~l---s~ea~~-il~~ll~k~p~kRLG~  613 (694)
T KOG0694|consen  586 RYPRFL---SKEAIA-IMRRLLRKNPEKRLGS  613 (694)
T ss_pred             CCCCcc---cHHHHH-HHHHHhccCcccccCC
Confidence            111111   223444 7779999999999866

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.97  E-value=9.7e-32  Score=298.71  Aligned_cols=237  Identities=22%  Similarity=0.339  Sum_probs=170.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||.||+|+..+                      ..+.+.+|+.++.++ +||||++++++|...+ 
T Consensus         6 ~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~-   84 (337)
T cd05054           6 RDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG-   84 (337)
T ss_pred             HHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC-
Confidence            3478889999999999999885320                      123567899999999 8999999999886433 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------------------------------------------
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------------------------------------------  742 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------------------------------------  742 (929)
                         ..+++||||+++|+|.+++....                                                      
T Consensus        85 ---~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (337)
T cd05054          85 ---GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEE  161 (337)
T ss_pred             ---CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchh
Confidence               34799999999999998875311                                                      


Q ss_pred             ---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccce
Q 002376          743 ---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV  807 (929)
Q Consensus       743 ---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~  807 (929)
                                     .++.||+.||+|||+.   +|+||||||+||++++++.+||+|||+++.+.....    ......
T Consensus       162 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~----~~~~~~  234 (337)
T cd05054         162 GDELYKEPLTLEDLISYSFQVARGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD----YVRKGD  234 (337)
T ss_pred             hhHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEeCCCcEEEeccccchhcccCcc----hhhccC
Confidence                           1246899999999998   999999999999999999999999999987632211    011122


Q ss_pred             eccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHH
Q 002376          808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIG  886 (929)
Q Consensus       808 ~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  886 (929)
                      ..++..|||||++.+..++.++||||+|++++++.. ...++....      .++.+............ ......++.+
T Consensus       235 ~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~  307 (337)
T cd05054         235 ARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQ------IDEEFCRRLKEGTRMRA-PEYATPEIYS  307 (337)
T ss_pred             CCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCC------ccHHHHHHHhccCCCCC-CccCCHHHHH
Confidence            356788999999999999999999999988877543 222221111      01111111111000000 0011223344


Q ss_pred             HHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          887 SVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       887 ~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                       ++.+||+.+|++||++.|+++.|+++.+
T Consensus       308 -l~~~cl~~~p~~RPs~~ell~~l~~~~~  335 (337)
T cd05054         308 -IMLDCWHNNPEDRPTFSELVEILGDLLQ  335 (337)
T ss_pred             -HHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence             8889999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.97  E-value=9.5e-33  Score=270.98  Aligned_cols=238  Identities=24%  Similarity=0.299  Sum_probs=177.8

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccCc------------------------HHHHHHHHHHHHcc-CCccccceeeec
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTGS------------------------WKSFIAECETLRNV-RHRNLVKLITSC  711 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~------------------------~~~~~~E~~~l~~l-~Hpniv~l~~~~  711 (929)
                      +...+.|...+.+|.|..+.|-++..+.+                        .++-.+|+.+++++ .||+|+++.++|
T Consensus        13 ~~fy~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~y   92 (411)
T KOG0599|consen   13 KGFYAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVY   92 (411)
T ss_pred             hhHHhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeec
Confidence            34455677778899998888866544311                        23455799999998 599999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCcccccc--------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIH--------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~--------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                      .     ...++++|+|.|+.|.|+|++.        +.|.+..|+..|++|||..   .|||||+||+|||+|++.++||
T Consensus        93 e-----s~sF~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~---~IVHRDLKpENILlddn~~i~i  164 (411)
T KOG0599|consen   93 E-----SDAFVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHAR---NIVHRDLKPENILLDDNMNIKI  164 (411)
T ss_pred             c-----CcchhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHh---hhhhcccChhheeeccccceEE
Confidence            4     4456899999999999999996        3567788999999999998   8999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCC------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchh-h
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG------ERPSTAGDVPTSESFAGEFNIVKWVESNLPENV-L  856 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~-~  856 (929)
                      +|||+|..+.++       ......+|||+|.|||.+..      ..|+..+|.|+.|+++|.+     ..+.-|.+- .
T Consensus       165 sDFGFa~~l~~G-------ekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTL-----LaGcpPFwHRk  232 (411)
T KOG0599|consen  165 SDFGFACQLEPG-------EKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTL-----LAGCPPFWHRK  232 (411)
T ss_pred             eccceeeccCCc-------hhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHH-----HcCCCchhHHH
Confidence            999999987533       33456799999999998763      2489999999999766543     333334311 1


Q ss_pred             hccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHHH
Q 002376          857 QVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQEI  916 (929)
Q Consensus       857 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~~  916 (929)
                      +++  .++-.+....+.+.+.|..++.-+++++.+|++.||.+|.|++|+++  .+..+...
T Consensus       233 Qml--MLR~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q~~~~  292 (411)
T KOG0599|consen  233 QML--MLRMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQIAQQ  292 (411)
T ss_pred             HHH--HHHHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHHHHHh
Confidence            111  12222222333344445556667777899999999999999999985  34444443

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.97  E-value=2.2e-31  Score=295.84  Aligned_cols=223  Identities=22%  Similarity=0.238  Sum_probs=167.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||.||+|.+..                    ..+.+.+|+++++.++|||||++++++.+.     
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~-----  103 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDE-----  103 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeC-----
Confidence            4578889999999999999986431                    124567899999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       104 ~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~ikL~DFG~a~~  180 (340)
T PTZ00426        104 SYLYLVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSL---NIVYRDLKPENLLLDKDGFIKMTDFGFAKV  180 (340)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEecCCCCee
Confidence            45899999999999999986433        3367899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...         .....+||+.|||||++.+..++.++||||+|+++|++.++..++......  ... ..+.   ....
T Consensus       181 ~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~--~~~-~~i~---~~~~  245 (340)
T PTZ00426        181 VDT---------RTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPL--LIY-QKIL---EGII  245 (340)
T ss_pred             cCC---------CcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHH--HHH-HHHh---cCCC
Confidence            521         122457999999999999989999999999999888876655444322110  000 0111   1111


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALRR  909 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~~  909 (929)
                      .....    +..-+++++.+|++.||++|+     +++|+++.
T Consensus       246 ~~p~~----~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h  284 (340)
T PTZ00426        246 YFPKF----LDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEH  284 (340)
T ss_pred             CCCCC----CCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcC
Confidence            11111    122233477799999999995     78887653

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.9e-31  Score=296.58  Aligned_cols=228  Identities=20%  Similarity=0.220  Sum_probs=168.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|+...                   ..+.+.+|++++..++||||+++++++..     ...
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~-----~~~   75 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQD-----DEY   75 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEc-----CCE
Confidence            468889999999999999987641                   13457789999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~  152 (333)
T cd05600          76 LYLAMEYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHEL---GYIHRDLKPENFLIDASGHIKLTDFGLSKGIV  152 (333)
T ss_pred             EEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEEEeCcCCcccc
Confidence            899999999999999986432        2357899999999998   99999999999999999999999999998542


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhh--cccc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM--TSNE  871 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~  871 (929)
                      .         ......||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+... .+....  ....
T Consensus       153 ~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~--~~~~~-~i~~~~~~~~~~  220 (333)
T cd05600         153 T---------YANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTP--NETWE-NLKYWKETLQRP  220 (333)
T ss_pred             c---------ccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCH--HHHHH-HHHhccccccCC
Confidence            1         12345799999999999999999999999999999987665544432221  11100 011000  0000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...... ..+...+.+++.+|+..+|++||+++|+++.
T Consensus       221 ~~~~~~-~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h  257 (333)
T cd05600         221 VYDDPR-FNLSDEAWDLITKLINDPSRRFGSLEDIKNH  257 (333)
T ss_pred             CCCccc-cccCHHHHHHHHHHhhChhhhcCCHHHHHhC
Confidence            000000 0111222337779999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.97  E-value=3.3e-31  Score=299.62  Aligned_cols=238  Identities=20%  Similarity=0.303  Sum_probs=171.1

Q ss_pred             HhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccC-CccccceeeecccC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSL  714 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~  714 (929)
                      ...++|...++||+|+||.||+|+..                      ...+.|.+|+++++++. |||||+++++|.+.
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            34568888899999999999987631                      11356889999999996 99999999999543


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc----------------------------------------------------
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER----------------------------------------------------  742 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------------------------------------------------  742 (929)
                           ...|+|||||++|+|.++++..+                                                    
T Consensus       114 -----~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (400)
T cd05105         114 -----GPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQY  188 (400)
T ss_pred             -----CceEEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhccccccccccccccccc
Confidence                 34899999999999998875321                                                    


Q ss_pred             ----------------------------------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          743 ----------------------------------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       743 ----------------------------------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                                                                          .++.|++.|++|||+.   +|+||||||
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dikp  265 (400)
T cd05105         189 VPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNLLSDDGSEGLTTLDLLSFTYQVARGMEFLASK---NCVHRDLAA  265 (400)
T ss_pred             chhhhhhhhhhhhhcccCcccccccccCcchhhHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCh
Confidence                                                                1245799999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhc
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESN  850 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~  850 (929)
                      +||++++++.+||+|||+++.......    ........+++.|||||++.+..++.++||||+|++++++..    .+.
T Consensus       266 ~Nill~~~~~~kL~DfGla~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt----~g~  337 (400)
T cd05105         266 RNVLLAQGKIVKICDFGLARDIMHDSN----YVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFS----LGG  337 (400)
T ss_pred             HhEEEeCCCEEEEEeCCcceecccccc----ccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHH----CCC
Confidence            999999999999999999986532111    111223357789999999999999999999999988777532    122


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      .|... ...+............  ..........+.+++.+||+.||++||++.++.++|+++.
T Consensus       338 ~P~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~l~~l~  398 (400)
T cd05105         338 TPYPG-MIVDSTFYNKIKSGYR--MAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSDIVESLL  398 (400)
T ss_pred             CCCcc-cchhHHHHHHHhcCCC--CCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHHHHHHHc
Confidence            22100 0011111111111100  0011112223334888999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-31  Score=295.53  Aligned_cols=215  Identities=27%  Similarity=0.303  Sum_probs=158.0

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||.||+++...                   ..+.+.+|+.++++++||||+++++++..     ....|+||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~lv~e~~   75 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQS-----PEKLYLVLAFI   75 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEec-----CCeEEEEEcCC
Confidence            6999999999987641                   12456789999999999999999998854     33589999999


Q ss_pred             CCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          730 SNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       730 ~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      ++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....      
T Consensus        76 ~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~------  146 (312)
T cd05585          76 NGGELFHHLQREGRFDLSRARFYTAELLCALENLHKF---NVIYRDLKPENILLDYQGHIALCDFGLCKLNMKD------  146 (312)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHeEECCCCcEEEEECcccccCccC------
Confidence            9999999886432        2356899999999998   9999999999999999999999999999853211      


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL  881 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  881 (929)
                      .......+||+.|||||++.+..++.++||||+|++++++..+..++....  ..+....    ......    ..+..+
T Consensus       147 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~--~~~~~~~----~~~~~~----~~~~~~  216 (312)
T cd05585         147 DDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDEN--VNEMYRK----ILQEPL----RFPDGF  216 (312)
T ss_pred             CCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCC--HHHHHHH----HHcCCC----CCCCcC
Confidence            111234579999999999999999999999999988777655444432211  1111111    111111    111112


Q ss_pred             HHHHHHHhccccCCCCCCCCC---HHHHH
Q 002376          882 ITIIGSVGLSCTTESPGGRIG---IREAL  907 (929)
Q Consensus       882 ~~~~~~l~~~Cl~~dP~~RPs---~~ev~  907 (929)
                      ...+++++.+||+.||++||+   +.|++
T Consensus       217 ~~~~~~li~~~L~~dp~~R~~~~~~~e~l  245 (312)
T cd05585         217 DRDAKDLLIGLLSRDPTRRLGYNGAQEIK  245 (312)
T ss_pred             CHHHHHHHHHHcCCCHHHcCCCCCHHHHH
Confidence            233344777999999999985   45554

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.1e-31  Score=292.49  Aligned_cols=222  Identities=23%  Similarity=0.283  Sum_probs=166.4

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||++....                   ..+.+.+|++++++++||||+++++++.+     ...
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~   75 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHD-----QRF   75 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhcc-----CCe
Confidence            468889999999999999987651                   12357789999999999999999998754     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+++|+|.++++..+        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~  152 (291)
T cd05612          76 LYMLMEYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSK---EIVYRDLKPENILLDKEGHIKLTDFGFAKKLR  152 (291)
T ss_pred             EEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEEecCcchhcc
Confidence            899999999999999886433        2367899999999998   99999999999999999999999999998652


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..         .....||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+........    ..  
T Consensus       153 ~~---------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~--~~~~~~i~~~----~~--  215 (291)
T cd05612         153 DR---------TWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNP--FGIYEKILAG----KL--  215 (291)
T ss_pred             CC---------cccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC----Cc--
Confidence            11         1234789999999999999999999999999888876555444322111  1111111110    00  


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALRR  909 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~~  909 (929)
                        ..+......+++++.+|++.||.+||+     ++|+++.
T Consensus       216 --~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h  254 (291)
T cd05612         216 --EFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNH  254 (291)
T ss_pred             --CCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcC
Confidence              011111223344777999999999995     7777643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.97  E-value=1.3e-31  Score=290.82  Aligned_cols=232  Identities=24%  Similarity=0.374  Sum_probs=168.2

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||.||+|....                      ..++|.+|++++++++||||+++++++...    
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~----   80 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKE----   80 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCC----
Confidence            367778999999999999876421                      134688999999999999999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCee
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNIL  774 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NIL  774 (929)
                       ...+++|||+++|+|.+++....                        .++.|++.||+|||+.   +++||||||+||+
T Consensus        81 -~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nil  156 (283)
T cd05048          81 -QPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHRDLAARNCL  156 (283)
T ss_pred             -CceEEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccccceEE
Confidence             33799999999999999886321                        2467899999999998   9999999999999


Q ss_pred             ecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc
Q 002376          775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE  853 (929)
Q Consensus       775 l~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~  853 (929)
                      +++++.+||+|||+++......    .........+++.|||||++.+..++.++||||+|++++++.. ...++.....
T Consensus       157 ~~~~~~~~L~dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~~  232 (283)
T cd05048         157 VGEGLTVKISDFGLSRDIYSAD----YYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFSN  232 (283)
T ss_pred             EcCCCcEEECCCcceeeccccc----cccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCCH
Confidence            9999999999999998653211    1111223356889999999998999999999999988877543 2212111111


Q ss_pred             hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          854 NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       854 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                        .     ++........... ....+..++ .+++.+||+.||++||+++||+++|+.+
T Consensus       233 --~-----~~~~~i~~~~~~~-~~~~~~~~~-~~l~~~c~~~~p~~Rp~~~~i~~~l~~~  283 (283)
T cd05048         233 --Q-----EVIEMIRSRQLLP-CPEDCPARV-YALMIECWNEIPARRPRFKDIHTRLRSW  283 (283)
T ss_pred             --H-----HHHHHHHcCCcCC-CcccCCHHH-HHHHHHHccCChhhCcCHHHHHHHHhcC
Confidence              1     1111111111000 001112223 3377799999999999999999999863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.97  E-value=1.9e-31  Score=288.82  Aligned_cols=234  Identities=22%  Similarity=0.263  Sum_probs=169.0

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||+||+|.+..                     ..+++..|+..+++++||||+++++++..      
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~------   80 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG------   80 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC------
Confidence            356778899999999999987521                     12456678888999999999999998742      


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++|+||+++|+|.++++...         .++.||+.||+|||+.   +++||||||+||++++++.+||+|||+++
T Consensus        81 ~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~kl~Dfg~~~  157 (279)
T cd05111          81 ASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEH---RMVHRNLAARNILLKSDSIVQIADFGVAD  157 (279)
T ss_pred             CccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEEcCCccce
Confidence            12689999999999999986432         2467999999999998   89999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .......    ........|+..|+|||++.++.++.++||||+|+++|++.. ...++.....       .........
T Consensus       158 ~~~~~~~----~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~~~-------~~~~~~~~~  226 (279)
T cd05111         158 LLYPDDK----KYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMMSYGAEPYAGMRP-------HEVPDLLEK  226 (279)
T ss_pred             eccCCCc----ccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCCCCCH-------HHHHHHHHC
Confidence            6532211    111223457789999999999999999999999988777543 2222211110       011111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..... ....+...+.. ++.+||..||++|||+.|+++.|+.+.+.
T Consensus       227 ~~~~~-~~~~~~~~~~~-li~~c~~~~p~~Rps~~el~~~l~~~~~~  271 (279)
T cd05111         227 GERLA-QPQICTIDVYM-VMVKCWMIDENVRPTFKELANEFTRMARD  271 (279)
T ss_pred             CCcCC-CCCCCCHHHHH-HHHHHcCCCcccCcCHHHHHHHHHHHHhC
Confidence            11000 00011223333 77899999999999999999999987753

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.97  E-value=1.7e-31  Score=290.05  Aligned_cols=240  Identities=23%  Similarity=0.264  Sum_probs=170.0

Q ss_pred             CCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          664 SHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +..+.||+|+||+||++...                     ...+.|.+|++++++++||||+++++++...+   ....
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~~~~   83 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQG---GKGL   83 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---CceE
Confidence            77899999999999764311                     12456889999999999999999999886422   2357


Q ss_pred             EEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||+++|+|.+++....       .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++.+...
T Consensus        84 ~lv~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~  160 (283)
T cd05080          84 QLIMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEG  160 (283)
T ss_pred             EEEecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccChheEEEcCCCcEEEeecccccccCCc
Confidence            99999999999999886432       3467899999999998   9999999999999999999999999999866422


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh--------HHHHhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP--------ELRQLM  867 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~  867 (929)
                      ...   ........++..|+|||++.+..++.++||||+|++++++.+...++...+..+.+..+.        .+....
T Consensus       161 ~~~---~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (283)
T cd05080         161 HEY---YRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLYELLTHCDSKQSPPKKFEEMIGPKQGQMTVVRLIELL  237 (283)
T ss_pred             chh---hccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHHHHHhCCCCCCCCcchhhhhhcccccccchhhhhhhh
Confidence            110   000112245677999999998899999999999988877655443332222111111111        111111


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ....  ....+...+..+.+++.+||+.+|++|||+++++++|+++.
T Consensus       238 ~~~~--~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~~l~~~~  282 (283)
T cd05080         238 ERGM--RLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIPILKEMH  282 (283)
T ss_pred             hcCC--CCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHHHHHHhh
Confidence            0000  00001111223334888999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.97  E-value=2.2e-31  Score=290.85  Aligned_cols=237  Identities=22%  Similarity=0.285  Sum_probs=166.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------------------cHHHHHHHHHHHHccCCccccceee
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------------------SWKSFIAECETLRNVRHRNLVKLIT  709 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------------------~~~~~~~E~~~l~~l~Hpniv~l~~  709 (929)
                      ++|+..+.||+|+||.||+++..+                               ..+.|.+|++++++++|||++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            478888999999999999875421                               1246889999999999999999999


Q ss_pred             ecccCCCCCcceEEEEEEecCCCCccccccccc--------------------cccccHHHHHHHhhhCCCCCEEecCCC
Q 002376          710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------------------KNELDITSALDYLHNDCEVPVVHSDLK  769 (929)
Q Consensus       710 ~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk  769 (929)
                      ++...+     ..++||||+++++|.+++....                    .++.+++.|++|||+.   +++|||||
T Consensus        85 ~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlk  156 (295)
T cd05097          85 VCVSDD-----PLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHRDLA  156 (295)
T ss_pred             EEcCCC-----ccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---CeeccccC
Confidence            986433     4799999999999999875321                    1356899999999998   99999999


Q ss_pred             CCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch--hHHh
Q 002376          770 PGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI--VKWV  847 (929)
Q Consensus       770 ~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~--~~~~  847 (929)
                      |+||++++++.+||+|||+++......    .........++..|+|||++.++.++.++||||+|++++++..  ..++
T Consensus       157 p~Nill~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~~l~el~~~~~~~p  232 (295)
T cd05097         157 TRNCLVGNHYTIKIADFGMSRNLYSGD----YYRIQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEMFTLCKEQP  232 (295)
T ss_pred             hhhEEEcCCCcEEecccccccccccCc----ceeccCcCcCceeecChhhhccCCcCchhhHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999997653211    0111122345778999999999999999999999988777532  1122


Q ss_pred             hhcCCchhhhccChHHHHhhcc-cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          848 ESNLPENVLQVLDPELRQLMTS-NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       848 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      +.....  .+.+... ...... ............+.-+.+++.+||+.||++||+|++|++.|++
T Consensus       233 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~~l~~  295 (295)
T cd05097         233 YSLLSD--EQVIENT-GEFFRNQGRQIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHHFLRE  295 (295)
T ss_pred             CcccCh--HHHHHHH-HHhhhhccccccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHhC
Confidence            211111  1111100 000000 0000000000111223348889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.97  E-value=3.6e-31  Score=289.35  Aligned_cols=237  Identities=22%  Similarity=0.284  Sum_probs=168.0

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------------------CcHHHHHHHHHHHHccCCccccce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------------------GSWKSFIAECETLRNVRHRNLVKL  707 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------------------~~~~~~~~E~~~l~~l~Hpniv~l  707 (929)
                      ++|+..+.||+|+||.||+++..                                 ...++|.+|+++++.++||||+++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~   84 (296)
T cd05095           5 KRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRL   84 (296)
T ss_pred             hhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceE
Confidence            46888999999999999987421                                 113568899999999999999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCcccccccc-------------------ccccccHHHHHHHhhhCCCCCEEecCC
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE-------------------RKNELDITSALDYLHNDCEVPVVHSDL  768 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~-------------------~~~~~~ia~aL~yLH~~~~~~iiHrDl  768 (929)
                      ++++...+     ..++||||+++|+|.+++...                   ..++.|++.|++|||+.   +++||||
T Consensus        85 ~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl  156 (296)
T cd05095          85 LAVCITSD-----PLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHRDL  156 (296)
T ss_pred             EEEEecCC-----ccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---CeecccC
Confidence            99985533     379999999999999988642                   12356899999999998   9999999


Q ss_pred             CCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch--hHH
Q 002376          769 KPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI--VKW  846 (929)
Q Consensus       769 k~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~--~~~  846 (929)
                      ||+||++++++.+|++|||+++.+.....    ........+++.|+|||+..++.++.++||||+|+++|++..  ..+
T Consensus       157 kp~Nili~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~~~~pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~  232 (296)
T cd05095         157 ATRNCLVGKNYTIKIADFGMSRNLYSGDY----YRIQGRAVLPIRWMSWESILLGKFTTASDVWAFGVTLWEILTLCKEQ  232 (296)
T ss_pred             ChheEEEcCCCCEEeccCcccccccCCcc----eeccCcCcCccccCCHHHHhcCCccchhhhhHHHHHHHHHHHhCCCC
Confidence            99999999999999999999986532110    011112244678999999888899999999999998888653  223


Q ss_pred             hhhcCCchhhhccChHHHHhhccc-chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          847 VESNLPENVLQVLDPELRQLMTSN-ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       847 ~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ++.....  .+.+.. ........ ..............+.+++.+||+.||++||+|.||++.|++
T Consensus       233 p~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  296 (296)
T cd05095         233 PYSQLSD--EQVIEN-TGEFFRDQGRQVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHATLLE  296 (296)
T ss_pred             CccccCh--HHHHHH-HHHHHhhccccccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            3322221  111110 00000000 000000001111233348889999999999999999999874

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.2e-32  Score=292.17  Aligned_cols=217  Identities=27%  Similarity=0.347  Sum_probs=157.3

Q ss_pred             CCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          663 FSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      |.-.+.||.|+||.||-+++.                   ..+.++.+|+..|++++|||+|.+.|+|....     ..|
T Consensus        28 f~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~-----TaW  102 (948)
T KOG0577|consen   28 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREH-----TAW  102 (948)
T ss_pred             HHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccc-----hHH
Confidence            334467999999999988765                   23568899999999999999999999986433     279


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||| -|+-.|.+.-.+         .+..+++.||+|||+.   +.||||||+.|||+.+.|.||++|||.|..+. 
T Consensus       103 LVMEYC-lGSAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~---~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~-  177 (948)
T KOG0577|consen  103 LVMEYC-LGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NRIHRDIKAGNILLSEPGLVKLADFGSASIMA-  177 (948)
T ss_pred             HHHHHH-hccHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---hHHhhhccccceEecCCCeeeeccccchhhcC-
Confidence            999999 568777775333         2356788999999998   89999999999999999999999999987652 


Q ss_pred             ccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                               ....++|||.|||||++.   .+.|+-|+||||+|++..|+.-..-+...... +     ..+..+...+.
T Consensus       178 ---------PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPPlFnMNA-M-----SALYHIAQNes  242 (948)
T KOG0577|consen  178 ---------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-M-----SALYHIAQNES  242 (948)
T ss_pred             ---------chhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCCccCchH-H-----HHHHHHHhcCC
Confidence                     235589999999999875   56799999999999877664222111111100 0     01111100000


Q ss_pred             --hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 --SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 --~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        -+...+.+.+..    ++..|++.=|.+|||.++++.
T Consensus       243 PtLqs~eWS~~F~~----Fvd~CLqKipqeRptse~ll~  277 (948)
T KOG0577|consen  243 PTLQSNEWSDYFRN----FVDSCLQKIPQERPTSEELLK  277 (948)
T ss_pred             CCCCCchhHHHHHH----HHHHHHhhCcccCCcHHHHhh
Confidence              011123344444    555999999999999887653

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=3.1e-31  Score=295.79  Aligned_cols=179  Identities=25%  Similarity=0.339  Sum_probs=142.2

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|+...                  ...++.+|++++++++||||+++++++...........|
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            47788999999999999987541                  124578999999999999999999998655433344689


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||++ ++|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....
T Consensus        81 lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~  156 (338)
T cd07859          81 VVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTA---NVFHRDLKPKNILANADCKLKICDFGLARVAFND  156 (338)
T ss_pred             EEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEccCccccccccc
Confidence            9999995 68988876332        3467999999999998   9999999999999999999999999999864321


Q ss_pred             cCCCCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ..   .........||+.|+|||++.+  ..++.++||||+|++++++.++..+
T Consensus       157 ~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~p  207 (338)
T cd07859         157 TP---TAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPL  207 (338)
T ss_pred             cC---ccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCC
Confidence            11   1111234579999999999876  5789999999999988887655433

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=2.7e-31  Score=294.93  Aligned_cols=173  Identities=23%  Similarity=0.366  Sum_probs=143.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..++||+|+||.||++.+..                 ..+.+.+|++++++++||||++++++|.+.     .+.
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~   78 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-----GEI   78 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEEC-----CEE
Confidence            3688999999999999999987641                 124688999999999999999999998653     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||+++|+|.++++...        .++.+++.|++|||+..  +|+||||||+||++++++.+||+|||+++.+..
T Consensus        79 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~  156 (333)
T cd06650          79 SICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  156 (333)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChhhEEEcCCCCEEEeeCCcchhhhh
Confidence            99999999999999986432        23568999999999742  699999999999999999999999999976532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      .        ......||..|+|||++.+..++.++||||+|++++++.....+
T Consensus       157 ~--------~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p  201 (333)
T cd06650         157 S--------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYP  201 (333)
T ss_pred             h--------ccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            1        11234689999999999998999999999999888876555443

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.97  E-value=1.2e-31  Score=290.26  Aligned_cols=233  Identities=21%  Similarity=0.269  Sum_probs=168.4

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      ++++|+..+.||+|+||.||+|.+.                      ....+|.+|+.+++.++||||+++++++...  
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~--   81 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQG--   81 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCC--
Confidence            4568999999999999999986532                      0124588999999999999999999998543  


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                         ...++||||+++|+|.++++..+                  .++.|++.|++|||+.   +++||||||+||+++++
T Consensus        82 ---~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~dlkp~Nil~~~~  155 (277)
T cd05062          82 ---QPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAED  155 (277)
T ss_pred             ---CCeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCcchheEEEcCC
Confidence               34799999999999999886421                  1245899999999997   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                      +.+|++|||+++.......    ........+++.|||||++.+..++.++||||+|++++++.. ...++.....  .+
T Consensus       156 ~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~~--~~  229 (277)
T cd05062         156 FTVKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMSN--EQ  229 (277)
T ss_pred             CCEEECCCCCccccCCcce----eecCCCCccCHhhcChhHhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCCH--HH
Confidence            9999999999986532111    001112345788999999999899999999999988877643 2333222211  11


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ..+........   .    ........+++++.+|++.+|++||++.|+++.|++
T Consensus       230 ~~~~~~~~~~~---~----~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  277 (277)
T cd05062         230 VLRFVMEGGLL---D----KPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKE  277 (277)
T ss_pred             HHHHHHcCCcC---C----CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHhhC
Confidence            11000000000   0    001112223348889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=2.7e-31  Score=289.46  Aligned_cols=237  Identities=27%  Similarity=0.359  Sum_probs=165.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc---CCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV---RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||+||+|+...                   ....+.+|+.+++++   +||||++++++|.......
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            368889999999999999986521                   123566788877766   6999999999986443333


Q ss_pred             cceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ....++||||++ ++|.+++...          ..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        81 ~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~dlkp~Nil~~~~~~~kl~Dfg~  156 (290)
T cd07862          81 ETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGL  156 (290)
T ss_pred             CCcEEEEEccCC-CCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEcCCCCEEEccccc
Confidence            456899999996 6888887532          13467999999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccCh-----
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDP-----  861 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~-----  861 (929)
                      ++.....       .......||+.|+|||++.+..++.++||||+|++++++....-++....+  ...++++.     
T Consensus       157 ~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~  229 (290)
T cd07862         157 ARIYSFQ-------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPG  229 (290)
T ss_pred             eEeccCC-------cccccccccccccChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCC
Confidence            9865321       122345789999999999988999999999999888876544333322211  11111100     


Q ss_pred             --HHH-------Hhhcccchhhh-hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 --ELR-------QLMTSNESQTI-QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 --~l~-------~~~~~~~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ...       ........... .....+...+++++.+|++.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~  286 (290)
T cd07862         230 EEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  286 (290)
T ss_pred             hhhchhhhcccchhccCCCCCCHHHHccCCCHHHHHHHHHHhccCchhcCCHHHHhc
Confidence              000       00000000000 000112334455888999999999999999974

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.97  E-value=1.3e-30  Score=288.65  Aligned_cols=217  Identities=26%  Similarity=0.309  Sum_probs=160.7

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +.||+|+||.||+++...                   ....+.+|+++++.++||||+++++++..     ....|+|||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~-----~~~~~lv~E   75 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQT-----HDRLCFVME   75 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEc-----CCEEEEEEe
Confidence            469999999999886531                   12456789999999999999999998854     335899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhh-CCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHN-DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      |+++|+|.+++...+        .++.|++.||+|||+ .   +|+||||||+|||+++++.+||+|||+++.....   
T Consensus        76 ~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~---  149 (325)
T cd05594          76 YANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKD---  149 (325)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcC---CEEecCCCCCeEEECCCCCEEEecCCCCeecCCC---
Confidence            999999998876432        236789999999997 5   8999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                         ........||+.|||||++.+..++.++||||+|++++++.++..++..... ...+.+.       .....    .
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~Pf~~~~~~~~~~~i~-------~~~~~----~  215 (325)
T cd05594         150 ---GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELIL-------MEEIR----F  215 (325)
T ss_pred             ---CcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCCCCCCCCHHHHHHHHh-------cCCCC----C
Confidence               1112335799999999999999999999999999999998766555432221 1111100       00000    0


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      +.....-+.+++.+|++.||++|+     +++++++
T Consensus       216 p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~  251 (325)
T cd05594         216 PRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQ  251 (325)
T ss_pred             CCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhc
Confidence            011112233377799999999996     8888874

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.97  E-value=8.9e-31  Score=290.12  Aligned_cols=219  Identities=26%  Similarity=0.323  Sum_probs=160.9

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +.||+|+||.||+++...                   ..+.+.+|+++++.++||||+++++++..     ....++|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~lv~E   75 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQT-----KDRLCFVME   75 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----CCEEEEEEe
Confidence            469999999999887541                   23467789999999999999999998854     345899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....    
T Consensus        76 y~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~----  148 (328)
T cd05593          76 YVNGGELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSG---KIVYRDLKLENLMLDKDGHIKITDFGLCKEGITD----  148 (328)
T ss_pred             CCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeEECCCCcEEEecCcCCccCCCc----
Confidence            999999988875432        3467899999999998   9999999999999999999999999998753211    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                        .......+||+.|||||++.+..++.++||||+|++++++..+..++.....  .+...    ............   
T Consensus       149 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~Pf~~~~~--~~~~~----~~~~~~~~~p~~---  217 (328)
T cd05593         149 --AATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFE----LILMEDIKFPRT---  217 (328)
T ss_pred             --ccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCCCCCCCH--HHHHH----HhccCCccCCCC---
Confidence              1112345799999999999999999999999999888876655444322111  11110    000011111111   


Q ss_pred             HHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRI-----GIREALRR  909 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~~  909 (929)
                       +..-+.+++.+|++.||++||     ++.|+++.
T Consensus       218 -~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h  251 (328)
T cd05593         218 -LSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRH  251 (328)
T ss_pred             -CCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcC
Confidence             122223377799999999997     88888753

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.97  E-value=2.7e-31  Score=295.12  Aligned_cols=234  Identities=22%  Similarity=0.283  Sum_probs=182.1

Q ss_pred             CCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          664 SHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +..++||+|+||.||||.+-                     +..+++..|+-+|.+++|||+++++|+|....      +
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~------~  772 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST------L  772 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch------H
Confidence            34579999999999999764                     23568999999999999999999999996533      6


Q ss_pred             EEEEEecCCCCcccccccccc---------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~~---------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .||++||+.|.|.+|++..|.         +..|||+||.|||.+   ++|||||.++|||+..-..+||.|||+|+.+.
T Consensus       773 qlvtq~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~q---rlVHrdLaaRNVLVksP~hvkitdfgla~ll~  849 (1177)
T KOG1025|consen  773 QLVTQLMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQ---RLVHRDLAARNVLVKSPNHVKITDFGLAKLLA  849 (1177)
T ss_pred             HHHHHhcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc---chhhhhhhhhheeecCCCeEEEEecchhhccC
Confidence            899999999999999986553         257999999999998   99999999999999999999999999999875


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .....    .......-.+.|||-|.+..++|+.++||||||++.||+.+    ++.-|.  ..+-..++.+.+...+ .
T Consensus       850 ~d~~e----y~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmT----FGa~Py--~gi~~~eI~dlle~ge-R  918 (1177)
T KOG1025|consen  850 PDEKE----YSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMT----FGAKPY--DGIPAEEIPDLLEKGE-R  918 (1177)
T ss_pred             ccccc----ccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHh----cCCCcc--CCCCHHHhhHHHhccc-c
Confidence            43221    11222344678999999999999999999999998888532    233222  1111222333222222 1


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      -.+.+-|...+.. ++.+||..|++.||+++++...+.++.+..+
T Consensus       919 LsqPpiCtiDVy~-~mvkCwmid~~~rp~fkel~~~fs~~ardpq  962 (1177)
T KOG1025|consen  919 LSQPPICTIDVYM-VMVKCWMIDADSRPTFKELAEEFSRMARDPQ  962 (1177)
T ss_pred             CCCCCCccHHHHH-HHHHHhccCcccCccHHHHHHHHHHHhcCcc
Confidence            2333456677777 9999999999999999999999999877644

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.97  E-value=3.5e-31  Score=287.66  Aligned_cols=242  Identities=25%  Similarity=0.322  Sum_probs=169.8

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||++...                    ...+.|.+|++++++++||||+++++++...+   ..
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~   80 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG---RR   80 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCC---CC
Confidence            46788899999999999997631                    12357889999999999999999999876432   23


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        81 ~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~  157 (284)
T cd05081          81 NLRLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSK---RYVHRDLATRNILVESENRVKIGDFGLTKV  157 (284)
T ss_pred             ceEEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHhhEEECCCCeEEECCCccccc
Confidence            4799999999999999986432         2357899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc---------cChH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV---------LDPE  862 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  862 (929)
                      +......   ........++..|+|||++.+..++.++||||+|++++++....-.....+....+.         ....
T Consensus       158 ~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd05081         158 LPQDKEY---YKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYSDKSCSPPAEFMRMMGNDKQGQMIVYH  234 (284)
T ss_pred             ccCCCcc---eeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHHHhhcCCcCCCcchhhhhhcccccccccchHH
Confidence            6422110   000111234556999999998899999999999988877644221111111111111         1111


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      +..........  .........+.+++.+||+.+|++||||+|++++|+++
T Consensus       235 ~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~l~~~  283 (284)
T cd05081         235 LIELLKNNGRL--PAPPGCPAEIYAIMKECWNNDPSQRPSFSELALQVEAI  283 (284)
T ss_pred             HHHHHhcCCcC--CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHhc
Confidence            11111111100  00011112233488899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.97  E-value=3e-31  Score=290.08  Aligned_cols=234  Identities=20%  Similarity=0.275  Sum_probs=169.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||+||+|....                   ..+.|.+|+++++++ +||||+++++++...     .
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-----~   76 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENR-----G   76 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccC-----C
Confidence            478888999999999999986431                   124688899999999 799999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          721 FLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                      ..++||||+++|+|.++++...                        .++.|++.|++|||+.   +|+||||||+||+++
T Consensus        77 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nill~  153 (297)
T cd05089          77 YLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHRDLAARNVLVG  153 (297)
T ss_pred             cceEEEEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCcCCcceEEEC
Confidence            4899999999999999886321                        2356899999999997   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~  855 (929)
                      +++.+||+|||+++.....       ........+..|+|||++.+..++.++||||+|++++++.. ...++....  .
T Consensus       154 ~~~~~kl~dfg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~--~  224 (297)
T cd05089         154 ENLASKIADFGLSRGEEVY-------VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT--C  224 (297)
T ss_pred             CCCeEEECCcCCCccccce-------eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC--H
Confidence            9999999999998643111       00111123567999999998899999999999988877543 222221111  1


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .+....     .....  ....+......+.+++.+||+.+|.+||+++++++.|+++.+...
T Consensus       225 ~~~~~~-----~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~~~~~~  280 (297)
T cd05089         225 AELYEK-----LPQGY--RMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQLSRMLEARK  280 (297)
T ss_pred             HHHHHH-----HhcCC--CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence            111111     10000  000011112233347889999999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.97  E-value=6.1e-31  Score=292.48  Aligned_cols=227  Identities=23%  Similarity=0.247  Sum_probs=164.2

Q ss_pred             CCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~  717 (929)
                      +|+..+.||+|+||.||+++..                       ...+.+.+|+.+++++ +||+|+++++++..    
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQT----   76 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEec----
Confidence            4778899999999999986542                       0123567899999999 59999999988843    


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                       ....++||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus        77 -~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nili~~~~~~kl~DfG~~  152 (332)
T cd05614          77 -EAKLHLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKL---GIVYRDIKLENILLDSEGHVVLTDFGLS  152 (332)
T ss_pred             -CCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHeEECCCCCEEEeeCcCC
Confidence             335899999999999999886433        2356899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLM  867 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~  867 (929)
                      +......     ........||+.|||||++.+.. ++.++||||+|++++++.++..++..... .....+...+.   
T Consensus       153 ~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~---  224 (332)
T cd05614         153 KEFLSEE-----KERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRIL---  224 (332)
T ss_pred             ccccccC-----CCccccccCCccccCHHHhcCCCCCCCccccccchhhhhhhhcCCCCCCCCCCCCCHHHHHHHHh---
Confidence            8643211     11123457999999999998754 78999999999999998766655432211 11111111111   


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      .....    .+..+...+++++.+|++.||++||     +++++++
T Consensus       225 ~~~~~----~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~  266 (332)
T cd05614         225 KCDPP----FPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKE  266 (332)
T ss_pred             cCCCC----CCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHc
Confidence            11111    1111223334477799999999999     6667764

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.97  E-value=3.5e-31  Score=282.98  Aligned_cols=228  Identities=25%  Similarity=0.348  Sum_probs=166.1

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||+++...              ..++|.+|++++++++||||+++++++...     ...++||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~iv~   78 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQ-----KPLYIVT   78 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccCCccHHHHHHHHHHHHHCCCCCceeEEEEEccC-----CCEEEEE
Confidence            357778899999999999886641              245788999999999999999999998543     3489999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.++++...         .++.+++.||+|||+.   +|+||||||+||++++++.+||+|||.++.......
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~  155 (256)
T cd05114          79 EFMENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERN---SFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEY  155 (256)
T ss_pred             EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcceEEEcCCCeEEECCCCCccccCCCce
Confidence            9999999999886422         2356899999999998   999999999999999999999999999886532110


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                           .......++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+.+. .+..   .....   
T Consensus       156 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~~~--~~~~~-~i~~---~~~~~---  221 (256)
T cd05114         156 -----TSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKKSN--YEVVE-MISR---GFRLY---  221 (256)
T ss_pred             -----eccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCCCH--HHHHH-HHHC---CCCCC---
Confidence                 11122245678999999998899999999999988777544 2322221111  01100 0110   00000   


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      .+......+.+++.+||+.+|++||+|+|+++.|
T Consensus       222 ~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~~l  255 (256)
T cd05114         222 RPKLASMTVYEVMYSCWHEKPEGRPTFAELLRAI  255 (256)
T ss_pred             CCCCCCHHHHHHHHHHccCCcccCcCHHHHHHhh
Confidence            0011112233488899999999999999999886

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=2.6e-31  Score=297.86  Aligned_cols=227  Identities=23%  Similarity=0.306  Sum_probs=161.7

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +|+..+.||+|+||.||++++..                 ..+.+.+|++++++++||||+++++++..     ....++
T Consensus        75 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~l  149 (353)
T PLN00034         75 ELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDH-----NGEIQV  149 (353)
T ss_pred             HHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEecc-----CCeEEE
Confidence            34556889999999999987641                 13568899999999999999999999854     334899


Q ss_pred             EEEecCCCCccccccc----cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCC
Q 002376          725 VYEFLSNGSLGDWIHG----ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~----~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~  800 (929)
                      ||||+++|+|.+....    ...++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+....    
T Consensus       150 v~e~~~~~~L~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~----  222 (353)
T PLN00034        150 LLEFMDGGSLEGTHIADEQFLADVARQILSGIAYLHRR---HIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTM----  222 (353)
T ss_pred             EEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEcccccceeccccc----
Confidence            9999999999765431    124578999999999998   99999999999999999999999999998653211    


Q ss_pred             CccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhh
Q 002376          801 SISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  874 (929)
                        ......+||..|+|||++..     ...+.++||||+|+++|++.....++..... .+..........   ......
T Consensus       223 --~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~---~~~~~~  297 (353)
T PLN00034        223 --DPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMS---QPPEAP  297 (353)
T ss_pred             --ccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHhcc---CCCCCC
Confidence              11223479999999998743     2346789999999888776555444331111 111111000000   000000


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                          .....-+++++.+||+.||++||++.|+++.
T Consensus       298 ----~~~~~~l~~li~~~l~~~P~~Rpt~~ell~h  328 (353)
T PLN00034        298 ----ATASREFRHFISCCLQREPAKRWSAMQLLQH  328 (353)
T ss_pred             ----CccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence                1111223337779999999999999999864

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=5.1e-31  Score=297.93  Aligned_cols=171  Identities=21%  Similarity=0.294  Sum_probs=140.9

Q ss_pred             CCCCCceeecccCceeEEeccccC----------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS  730 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~  730 (929)
                      ++|+..+.||+|+||.||++....          ..+.+.+|++++++++|||||++++++...     ...++||||+.
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-----~~~~lv~e~~~  166 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQRGGTATEAHILRAINHPSIIQLKGTFTYN-----KFTCLILPRYK  166 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechhhhhhHHHHHHHHhCCCCCCCCEeEEEEEC-----CeeEEEEecCC
Confidence            579999999999999999987652          234678999999999999999999998543     34799999995


Q ss_pred             CCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCc
Q 002376          731 NGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI  802 (929)
Q Consensus       731 ~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~  802 (929)
                       ++|.+++...+        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.....     ..
T Consensus       167 -~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~---~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~-----~~  237 (391)
T PHA03212        167 -TDLYCYLAAKRNIAICDILAIERSVLRAIQYLHEN---RIIHRDIKAENIFINHPGDVCLGDFGAACFPVDI-----NA  237 (391)
T ss_pred             -CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHhEEEcCCCCEEEEeCCcccccccc-----cc
Confidence             78888775432        3357899999999998   9999999999999999999999999999753211     11


Q ss_pred             cccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhH
Q 002376          803 SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       803 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ......+||+.|+|||++.+..++.++||||+|+++|++.+..
T Consensus       238 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~  280 (391)
T PHA03212        238 NKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCH  280 (391)
T ss_pred             cccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCC
Confidence            1223457999999999999999999999999999888865543

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.97  E-value=6.3e-31  Score=290.78  Aligned_cols=218  Identities=24%  Similarity=0.294  Sum_probs=159.1

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +.||+|+||.||+++...                   ....+.+|++++++++||||+++++++...     ...|+|||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~-----~~~~lv~E   75 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH-----DRLCFVME   75 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecC-----CEEEEEEe
Confidence            469999999999887541                   123566899999999999999999988543     35899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....    
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~----  148 (323)
T cd05595          76 YANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISD----  148 (323)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEEcCCCCEEecccHHhccccCC----
Confidence            999999988876432        3367899999999998   9999999999999999999999999998753211    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                        ........||+.|||||++.+..++.++||||+|+++|++.....++.....  .+..    .............   
T Consensus       149 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~~--~~~~----~~~~~~~~~~p~~---  217 (323)
T cd05595         149 --GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--ERLF----ELILMEEIRFPRT---  217 (323)
T ss_pred             --CCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCCCCCCCH--HHHH----HHHhcCCCCCCCC---
Confidence              1112335799999999999999999999999999888776554443322111  1111    1111111111111   


Q ss_pred             HHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                       +..-+++++.+|++.||++||     ++.++++
T Consensus       218 -~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~  250 (323)
T cd05595         218 -LSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  250 (323)
T ss_pred             -CCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHc
Confidence             122233467799999999998     7888764

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.97  E-value=2.4e-31  Score=289.42  Aligned_cols=235  Identities=24%  Similarity=0.314  Sum_probs=166.6

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+++...                  ..+.+.+|++++++++||||+++++++..     ....
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~   75 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRR-----RGKL   75 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEec-----CCEE
Confidence            468889999999999999987651                  13467899999999999999999999854     3458


Q ss_pred             EEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||++++.+..+.+..        +.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        76 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  152 (287)
T cd07848          76 YLVFEYVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKN---DIVHRDIKPENLLISHNDVLKLCDFGFARNLSE  152 (287)
T ss_pred             EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccCcccccc
Confidence            9999999988776554311        23467899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--h---hhhccC---hHHHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--N---VLQVLD---PELRQL  866 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~---~~~~~~---~~l~~~  866 (929)
                      ..     ........||+.|+|||++.+..++.++||||+|+++|++..+..++.....  .   ..+...   ......
T Consensus       153 ~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (287)
T cd07848         153 GS-----NANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGESEIDQLFTIQKVLGPLPAEQMKL  227 (287)
T ss_pred             cc-----cccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhCCCCHHHHHh
Confidence            11     1112235789999999999998999999999999988887655433322111  0   000000   000000


Q ss_pred             hcccc--------------hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNE--------------SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~--------------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....              .........++..+.+++.+|++.||++|||++|+++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~  283 (287)
T cd07848         228 FYSNPRFHGLRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLN  283 (287)
T ss_pred             hhccchhcccccCcccCcccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            00000              0000000112333455888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.97  E-value=4.1e-31  Score=288.91  Aligned_cols=237  Identities=22%  Similarity=0.294  Sum_probs=167.7

Q ss_pred             hCCCCCceeecccCceeEEecccc---------------------------------CcHHHHHHHHHHHHccCCccccc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT---------------------------------GSWKSFIAECETLRNVRHRNLVK  706 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~---------------------------------~~~~~~~~E~~~l~~l~Hpniv~  706 (929)
                      .++|+..+.||+|+||.||+++..                                 ...+.|.+|++++++++||||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            357888999999999999986532                                 12356888999999999999999


Q ss_pred             eeeecccCCCCCcceEEEEEEecCCCCccccccccc-------------------cccccHHHHHHHhhhCCCCCEEecC
Q 002376          707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-------------------KNELDITSALDYLHNDCEVPVVHSD  767 (929)
Q Consensus       707 l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------------------~~~~~ia~aL~yLH~~~~~~iiHrD  767 (929)
                      ++++|...     ...++||||+++++|.+++....                   .++.|++.||+|||+.   +|+|||
T Consensus        84 ~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~d  155 (296)
T cd05051          84 LLGVCTVD-----PPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHRD  155 (296)
T ss_pred             EEEEEecC-----CCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Cccccc
Confidence            99998543     34799999999999999886432                   2356899999999998   999999


Q ss_pred             CCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh--H
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV--K  845 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~--~  845 (929)
                      |||+||++++++.+|++|||+++........    .......+++.|||||++.+..++.++||||+|++++++...  .
T Consensus       156 lkp~Nili~~~~~~~l~dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~  231 (296)
T cd05051         156 LATRNCLVGKNYTIKIADFGMSRNLYSSDYY----RVQGRAPLPIRWMAWESVLLGKFTTKSDVWAFGVTLWEILTLCRE  231 (296)
T ss_pred             cchhceeecCCCceEEccccceeecccCcce----eecCcCCCCceecCHHHhhcCCCCccchhhhhHHHHHHHHhcCCC
Confidence            9999999999999999999999865322110    111233567899999999988999999999999887775431  1


Q ss_pred             HhhhcCCchhhhccChHHHHhhcc-cchhhh-hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          846 WVESNLPENVLQVLDPELRQLMTS-NESQTI-QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       846 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .++...+.  .+.+... ...... ...... ....+..++.+ ++.+|++.||++||||+|+++.|++
T Consensus       232 ~p~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~-li~~cl~~~p~~Rpt~~el~~~L~~  296 (296)
T cd05051         232 QPYEHLTD--QQVIENA-GHFFRDDGRQIYLPRPPNCPKDIYE-LMLECWRRDEEDRPTFREIHLFLQR  296 (296)
T ss_pred             CCCCCcCh--HHHHHHH-HhccccccccccCCCccCCCHHHHH-HHHHHhccChhcCCCHHHHHHHhcC
Confidence            11111111  1111110 000000 000000 00011123344 8889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.97  E-value=6.1e-31  Score=287.17  Aligned_cols=236  Identities=21%  Similarity=0.345  Sum_probs=170.1

Q ss_pred             HhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      ...++|+..+.||+|+||.||++...                      ....++.+|+++++++ +||||+++++++...
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34457888899999999999987642                      1123578899999999 899999999998543


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                           ...++||||+++|+|.++++..+                        .++.|++.|++|||+.   +|+||||||
T Consensus        89 -----~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp  160 (293)
T cd05053          89 -----GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHRDLAA  160 (293)
T ss_pred             -----CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Cccccccce
Confidence                 34899999999999999885321                        2356899999999987   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +||++++++.+|++|||+++.+......    .......++..|+|||++.+..++.++||||+|++++++.. ...++.
T Consensus       161 ~Nil~~~~~~~kL~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  236 (293)
T cd05053         161 RNVLVTEDHVMKIADFGLARDIHHIDYY----RKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYP  236 (293)
T ss_pred             eeEEEcCCCeEEeCccccccccccccce----eccCCCCCCccccCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCC
Confidence            9999999999999999999865322110    01112235678999999999999999999999998877532 221111


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ..+  ..+     +........... ....+...+.+ ++.+||+.||++||||.|+++.|+++.
T Consensus       237 ~~~--~~~-----~~~~~~~~~~~~-~~~~~~~~~~~-li~~~l~~~p~~Rps~~eil~~l~~~~  292 (293)
T cd05053         237 GIP--VEE-----LFKLLKEGYRME-KPQNCTQELYH-LMRDCWHEVPSQRPTFKQLVEDLDRML  292 (293)
T ss_pred             CCC--HHH-----HHHHHHcCCcCC-CCCCCCHHHHH-HHHHHcccCcccCcCHHHHHHHHHHhh
Confidence            111  111     111111110000 00011223333 888999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.97  E-value=4.5e-31  Score=287.36  Aligned_cols=236  Identities=24%  Similarity=0.325  Sum_probs=171.5

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|...+.||+|+||+||++...                     ...+.+.+|++++++++||||+++++++...     
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   79 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG-----   79 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-----
Confidence            46778899999999999988631                     1134688999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc---------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                      ...++||||+++|+|.++++...                     .++.|++.||+|||+.   +++||||||+||+++++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~dlkp~Nili~~~  156 (288)
T cd05093          80 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN  156 (288)
T ss_pred             CccEEEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEEccC
Confidence            34799999999999998886321                     2356899999999998   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                      +.+||+|||+++......    .........++..|+|||++.+..++.++||||+|++++++.+ ...++.....  .+
T Consensus       157 ~~~kl~dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~~--~~  230 (288)
T cd05093         157 LLVKIGDFGMSRDVYSTD----YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NE  230 (288)
T ss_pred             CcEEeccCCccccccCCc----eeecCCCCCccccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HH
Confidence            999999999998653211    0111122346788999999998899999999999988777543 2222211111  11


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ............       ........+.+++.+||+.||.+|||+.|+.+.|+++....
T Consensus       231 ~~~~i~~~~~~~-------~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~~l~~~~~~~  283 (288)
T cd05093         231 VIECITQGRVLQ-------RPRTCPKEVYDLMLGCWQREPHMRLNIKEIHSLLQNLAKAS  283 (288)
T ss_pred             HHHHHHcCCcCC-------CCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHhc
Confidence            111100000000       00011122334888999999999999999999999988653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=6.8e-32  Score=290.97  Aligned_cols=219  Identities=22%  Similarity=0.324  Sum_probs=159.2

Q ss_pred             ceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      .-.+|.|+||+||++..+                ...++|.-|+++|+.++||+||++++.|+-.+     .+|+..|||
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~en-----kLwiliEFC  111 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFEN-----KLWILIEFC  111 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccC-----ceEEEEeec
Confidence            456899999999998876                13467899999999999999999999876533     389999999


Q ss_pred             CCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCC
Q 002376          730 SNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       730 ~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~  800 (929)
                      +||-....+-+         .+.++.+++.||.|||++   .|||||+|+.|||++-+|.++++|||++....      .
T Consensus       112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~---~iIHRDLKAGNiL~TldGdirLADFGVSAKn~------~  182 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQ---NIIHRDLKAGNILLTLDGDIRLADFGVSAKNK------S  182 (1187)
T ss_pred             CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhc---chhhhhccccceEEEecCcEeeecccccccch------h
Confidence            99988765532         234477899999999998   99999999999999999999999999876432      1


Q ss_pred             CccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch---
Q 002376          801 SISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES---  872 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  872 (929)
                      .......+.|||+|||||++.     ..+|+.++||||+|+.+.+|.-.+-+...+.  .+.++-    .....+++   
T Consensus       183 t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHheln--pMRVll----KiaKSePPTLl  256 (1187)
T KOG0579|consen  183 TRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELN--PMRVLL----KIAKSEPPTLL  256 (1187)
T ss_pred             HHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccc--hHHHHH----HHhhcCCCccc
Confidence            223345689999999999865     5579999999999977666533322221111  111111    11111111   


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ++..+...+..    +..+|+..||..||+++++++
T Consensus       257 qPS~Ws~~F~D----fLk~cL~Knp~~Rp~aaqll~  288 (1187)
T KOG0579|consen  257 QPSHWSRSFSD----FLKRCLVKNPRNRPPAAQLLK  288 (1187)
T ss_pred             CcchhhhHHHH----HHHHHHhcCCccCCCHHHHhh
Confidence            11112223343    555999999999999999864

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.97  E-value=4.5e-31  Score=286.67  Aligned_cols=230  Identities=20%  Similarity=0.312  Sum_probs=166.2

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||+||+|+..                     ...+.|.+|++++++++||||+++++++....    
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----   80 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQ----   80 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCC----
Confidence            35777899999999999998631                     01246889999999999999999999985433    


Q ss_pred             ceEEEEEEecCCCCccccccccc-------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCee
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER-------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNIL  774 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~-------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NIL  774 (929)
                       ..|+||||+++|+|.+++....                         .++.+++.||+|||+.   +|+||||||+||+
T Consensus        81 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~nil  156 (283)
T cd05090          81 -PVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHKDLAARNIL  156 (283)
T ss_pred             -ceEEEEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---CeehhccccceEE
Confidence             3799999999999999884211                         2356899999999998   8999999999999


Q ss_pred             ecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc
Q 002376          775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE  853 (929)
Q Consensus       775 l~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~  853 (929)
                      +++++.+|++|||+++.......    ........++..|+|||++.+..++.++||||+|++++++.. ...++.....
T Consensus       157 i~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~~  232 (283)
T cd05090         157 IGEQLHVKISDLGLSREIYSADY----YRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFSN  232 (283)
T ss_pred             EcCCCcEEeccccccccccCCcc----eecccCCCccceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCCH
Confidence            99999999999999986532111    111122346778999999988899999999999988777543 2222211111


Q ss_pred             -hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          854 -NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       854 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                       ...+.++.        ....  ...+.....+.+++.+||+.||++||++.++.++|+.
T Consensus       233 ~~~~~~~~~--------~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~l~~  282 (283)
T cd05090         233 QEVIEMVRK--------RQLL--PCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTRLRS  282 (283)
T ss_pred             HHHHHHHHc--------CCcC--CCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHHhhc
Confidence             11111111        0000  0001111223337779999999999999999998864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.97  E-value=5.2e-31  Score=287.37  Aligned_cols=235  Identities=24%  Similarity=0.348  Sum_probs=171.8

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+|...+.||+|+||.||+++..                     ...+.+.+|++++++++||||+++++++...     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   79 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDG-----   79 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccC-----
Confidence            35777899999999999988631                     1135788999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCcccccccc------------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE------------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~------------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl  775 (929)
                      ...++||||+++++|.+++...                        ..++.|++.|++|||+.   +|+||||||+||++
T Consensus        80 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~dlkp~Nil~  156 (291)
T cd05094          80 DPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLV  156 (291)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccCcceEEE
Confidence            3479999999999999998532                        12356899999999998   99999999999999


Q ss_pred             cCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCch
Q 002376          776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPEN  854 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~  854 (929)
                      ++++.+||+|||+++.......    ........|+..|+|||++.+..++.++||||+|++++++.+ ...++..... 
T Consensus       157 ~~~~~~~l~dfg~a~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-  231 (291)
T cd05094         157 GANLLVKIGDFGMSRDVYSTDY----YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLSN-  231 (291)
T ss_pred             ccCCcEEECCCCcccccCCCce----eecCCCCCcceeecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-
Confidence            9999999999999976532110    011123456889999999999999999999999988777544 3333222211 


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                       .+.++. ...   .....   .....+..+.+++.+||+.+|++||++++|+++|+++...
T Consensus       232 -~~~~~~-~~~---~~~~~---~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~~l~~~~~~  285 (291)
T cd05094         232 -TEVIEC-ITQ---GRVLE---RPRVCPKEVYDIMLGCWQREPQQRLNIKEIYKILHALGKA  285 (291)
T ss_pred             -HHHHHH-HhC---CCCCC---CCccCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHhh
Confidence             111110 110   00000   0011122233488899999999999999999999998664

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.97  E-value=4.4e-31  Score=287.83  Aligned_cols=232  Identities=22%  Similarity=0.323  Sum_probs=168.5

Q ss_pred             CCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +|...+.||+|+||.||+|...                      ...+++.+|+.+++.++||||++++++|...+    
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----   76 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDG----   76 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCC----
Confidence            3667789999999999998642                      01346889999999999999999999985433    


Q ss_pred             ceEEEEEEecCCCCccccccccc--------------------------------cccccHHHHHHHhhhCCCCCEEecC
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------------------------------KNELDITSALDYLHNDCEVPVVHSD  767 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------------------------------~~~~~ia~aL~yLH~~~~~~iiHrD  767 (929)
                       ..++||||+++|+|.+++...+                                .++.|++.|++|||+.   +|+|||
T Consensus        77 -~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~d  152 (290)
T cd05045          77 -PLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHRD  152 (290)
T ss_pred             -CcEEEEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehhh
Confidence             3799999999999999875321                                2356899999999998   999999


Q ss_pred             CCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHH
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKW  846 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~  846 (929)
                      |||+||++++++.+||+|||+++.......    ........++..|+|||++.+..++.++||||+|++++++.. ...
T Consensus       153 ikp~nill~~~~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~  228 (290)
T cd05045         153 LAARNVLVAEGRKMKISDFGLSRDVYEEDS----YVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGN  228 (290)
T ss_pred             hhhheEEEcCCCcEEeccccccccccCccc----hhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999986532211    011122346778999999988899999999999988777543 332


Q ss_pred             hhhcCCc-hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          847 VESNLPE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       847 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ++..... .+.+.+....    ...  ...   .+..++. +++.+|++.+|++||+++|+++.|+++..
T Consensus       229 p~~~~~~~~~~~~~~~~~----~~~--~~~---~~~~~~~-~~i~~cl~~~P~~Rp~~~~i~~~l~~~~~  288 (290)
T cd05045         229 PYPGIAPERLFNLLKTGY----RME--RPE---NCSEEMY-NLMLTCWKQEPDKRPTFADISKELEKMMV  288 (290)
T ss_pred             CCCCCCHHHHHHHHhCCC----CCC--CCC---CCCHHHH-HHHHHHccCCcccCCCHHHHHHHHHHHHh
Confidence            2221111 1111111100    000  000   1112233 37789999999999999999999999764

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=5.8e-31  Score=275.92  Aligned_cols=251  Identities=23%  Similarity=0.297  Sum_probs=178.0

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHHcc--CCccccceeeecccCCCCCcceEEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRNV--RHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~l--~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .+....+.||+|.||+||+|++++           +.+.+.+|.++.+.+  +|+||..+++.-.... ..--++|||.+
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~-gs~TQLwLvTd  289 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDN-GSWTQLWLVTD  289 (513)
T ss_pred             heeEEEEEecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHHhccchhhhhhhccccCC-CceEEEEEeee
Confidence            456677999999999999999984           456788999988874  9999999988755433 23446899999


Q ss_pred             ecCCCCccccccccc-------cccccHHHHHHHhhhC-----CCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          728 FLSNGSLGDWIHGER-------KNELDITSALDYLHND-----CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~-----~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |-+.|||+|||....       +.++.+|.||+|||..     ..|.|.|||||+.|||+..++.+.|+|+|+|-.....
T Consensus       290 YHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~  369 (513)
T KOG2052|consen  290 YHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSD  369 (513)
T ss_pred             cccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEeccc
Confidence            999999999997432       3467899999999964     4689999999999999999999999999999765433


Q ss_pred             cCCCCCccccceeccccccccccccCCCC------CCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhcc--ChHHH
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGER------PSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVL--DPELR  864 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~--~~~l~  864 (929)
                      .+  .-.......+||-+|||||++....      --..+||||||.++||+.-.--..+...+   ++.+++  ||...
T Consensus       370 t~--~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~DPs~e  447 (513)
T KOG2052|consen  370 TD--TIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSDPSFE  447 (513)
T ss_pred             CC--cccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCCCCHH
Confidence            21  1112234568999999999986542      24679999999777774322221111111   112221  22211


Q ss_pred             Hh--------hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          865 QL--------MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       865 ~~--------~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      +.        +....+.+....+++..+.+ ++..||..+|+.|-|+--+-+.|.++.+
T Consensus       448 eMrkVVCv~~~RP~ipnrW~s~~~l~~m~k-lMkeCW~~Np~aRltALriKKtl~~l~~  505 (513)
T KOG2052|consen  448 EMRKVVCVQKLRPNIPNRWKSDPALRVMAK-LMKECWYANPAARLTALRIKKTLAKLSN  505 (513)
T ss_pred             HHhcceeecccCCCCCcccccCHHHHHHHH-HHHHhhcCCchhhhHHHHHHHHHHHHhc
Confidence            11        11111111222245665666 9999999999999999888888888765

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.96  E-value=3.9e-31  Score=298.81  Aligned_cols=238  Identities=19%  Similarity=0.267  Sum_probs=170.7

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccC-Cccccceeeeccc
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVR-HRNLVKLITSCSS  713 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~  713 (929)
                      ....++|...+.||+|+||.||+|++.                      ...+.+.+|++++.++. |||||+++++|..
T Consensus        33 ~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~~  112 (401)
T cd05107          33 EMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTK  112 (401)
T ss_pred             eecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEcc
Confidence            344456778899999999999998642                      11246889999999997 9999999999965


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc---------------------------------------------------
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER---------------------------------------------------  742 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------------------------------------  742 (929)
                      ..     ..++||||+++|+|.+++++.+                                                   
T Consensus       113 ~~-----~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (401)
T cd05107         113 GG-----PIYIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESA  187 (401)
T ss_pred             CC-----CcEEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCcccc
Confidence            33     4799999999999999886321                                                   


Q ss_pred             -------------------------------------------------------cccccHHHHHHHhhhCCCCCEEecC
Q 002376          743 -------------------------------------------------------KNELDITSALDYLHNDCEVPVVHSD  767 (929)
Q Consensus       743 -------------------------------------------------------~~~~~ia~aL~yLH~~~~~~iiHrD  767 (929)
                                                                             .++.|++.||+|||+.   +|+|||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrd  264 (401)
T cd05107         188 DYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASK---NCVHRD  264 (401)
T ss_pred             CccchhcchhhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CcCccc
Confidence                                                                   1235899999999987   999999


Q ss_pred             CCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHH
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKW  846 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~  846 (929)
                      |||+|||+++++.+|++|||+++.......    ........|+..|||||++.+..++.++||||+|++++++.. ...
T Consensus       265 lkp~NiLl~~~~~~kL~DfGla~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~  340 (401)
T cd05107         265 LAARNVLICEGKLVKICDFGLARDIMRDSN----YISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGT  340 (401)
T ss_pred             CCcceEEEeCCCEEEEEecCcceecccccc----cccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999986532111    011122357889999999998889999999999988777543 222


Q ss_pred             hhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          847 VESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       847 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ++...+.  .+    ..........  +...+......+.+++.+||+.+|++||+++|+++.|+++.
T Consensus       341 P~~~~~~--~~----~~~~~~~~~~--~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~L~~~~  400 (401)
T cd05107         341 PYPELPM--NE----QFYNAIKRGY--RMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHLVGDLL  400 (401)
T ss_pred             CCCCCCc--hH----HHHHHHHcCC--CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHh
Confidence            2221111  11    0111110000  00001111222334777999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.96  E-value=1.2e-32  Score=273.19  Aligned_cols=225  Identities=24%  Similarity=0.296  Sum_probs=167.2

Q ss_pred             CCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          663 FSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      |+...++|+|+||.||++.++              .+.++..+|+.+|++++.|+||++||.|+...     .+|+||||
T Consensus        35 FDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~s-----DLWIVMEY  109 (502)
T KOG0574|consen   35 FDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHS-----DLWIVMEY  109 (502)
T ss_pred             HHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccchHHHHHHHHHHHHHcCCchhhhhhhhhccCC-----ceEeehhh
Confidence            455688999999999998776              34678999999999999999999999886433     38999999


Q ss_pred             cCCCCccccccccccc---------cccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          729 LSNGSLGDWIHGERKN---------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       729 ~~~gsL~~~l~~~~~~---------~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |..|+..+.++.+++.         ..+.++||+|||..   .-||||||+.|||++.+|.+|++|||+|..+....   
T Consensus       110 CGAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~---~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTM---  183 (502)
T KOG0574|consen  110 CGAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDL---KKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTM---  183 (502)
T ss_pred             cCCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHH---HHHHhhcccccEEEcccchhhhhhccccchhhhhH---
Confidence            9999999999855543         34567899999987   78999999999999999999999999998774321   


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                         .....+.||+.|||||++..-.|..++||||+|+.+.|+.-+.-++..+. .+..++-      ++..+++....++
T Consensus       184 ---AKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsDIH-PMRAIFM------IPT~PPPTF~KPE  253 (502)
T KOG0574|consen  184 ---AKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSDIH-PMRAIFM------IPTKPPPTFKKPE  253 (502)
T ss_pred             ---HhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccccc-ccceeEe------ccCCCCCCCCChH
Confidence               12345689999999999999999999999999988877644333222211 1111110      1111111111111


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .-+.-..++++.|+-..|++|-|+.++++
T Consensus       254 ~WS~~F~DFi~~CLiK~PE~R~TA~~L~~  282 (502)
T KOG0574|consen  254 EWSSEFNDFIRSCLIKKPEERKTALRLCE  282 (502)
T ss_pred             hhhhHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence            12222223666999999999999988764

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=1.4e-30  Score=288.13  Aligned_cols=218  Identities=24%  Similarity=0.297  Sum_probs=160.3

Q ss_pred             eeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          667 NLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +.||+|+||.||+++..                       .....+.+|+++++.++||||+++++++...     ...|
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~-----~~~~   76 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTG-----GKLY   76 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecC-----CeEE
Confidence            57999999999987642                       0123467899999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  153 (323)
T cd05584          77 LILEYLSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQ---GIIYRDLKPENILLDAQGHVKLTDFGLCKESIHE  153 (323)
T ss_pred             EEEeCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEeeCcCCeecccC
Confidence            9999999999999886433        2356899999999998   9999999999999999999999999998753211


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                            ........||+.|+|||++.+..++.++||||+|+++|++..+..++.....  .+.+    ............
T Consensus       154 ------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~pf~~~~~--~~~~----~~~~~~~~~~~~  221 (323)
T cd05584         154 ------GTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDMLTGAPPFTAENR--KKTI----DKILKGKLNLPP  221 (323)
T ss_pred             ------CCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHhcCCCCCCCCCH--HHHH----HHHHcCCCCCCC
Confidence                  1112335799999999999998999999999999888887665554432221  1111    111111111111


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                          .+...+.+++.+|++.||++||     ++.++++
T Consensus       222 ----~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~  255 (323)
T cd05584         222 ----YLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQS  255 (323)
T ss_pred             ----CCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhc
Confidence                1122233477799999999999     7777765

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.96  E-value=1.3e-30  Score=295.01  Aligned_cols=232  Identities=21%  Similarity=0.255  Sum_probs=164.2

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .|+..+.||+|+||+||+|+...                   ..+.+.+|++++++++|||||++++++.+     ....
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~-----~~~~   76 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQD-----KDNL   76 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEec-----CCEE
Confidence            57788999999999999987641                   12357789999999999999999999854     3358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+..
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~  153 (381)
T cd05626          77 YFVMDYIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKM---GFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRW  153 (381)
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCcHHHEEECCCCCEEEeeCcCCccccc
Confidence            99999999999999886432        3356899999999998   999999999999999999999999999864321


Q ss_pred             ccCCC-----------------------------------------CCccccceeccccccccccccCCCCCCCCCCCCC
Q 002376          795 RVDNQ-----------------------------------------SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT  833 (929)
Q Consensus       795 ~~~~~-----------------------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s  833 (929)
                      .....                                         .........+||+.|||||++.+..++.++||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (381)
T cd05626         154 THNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWS  233 (381)
T ss_pred             ccccccccccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceee
Confidence            00000                                         0000112357999999999999989999999999


Q ss_pred             CcCCCCCcchhHHhhhcCCch--hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhcc--ccCCCCCCCCCHHHHHHH
Q 002376          834 SESFAGEFNIVKWVESNLPEN--VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLS--CTTESPGGRIGIREALRR  909 (929)
Q Consensus       834 ~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--Cl~~dP~~RPs~~ev~~~  909 (929)
                      +|+++|++.++..++......  ...+......  .  ..............    ++.+  |+..+|.+||+++|++..
T Consensus       234 lG~il~elltG~~Pf~~~~~~~~~~~i~~~~~~--~--~~~~~~~~s~~~~d----li~~ll~~~~~~~~R~~~~~~l~h  305 (381)
T cd05626         234 VGVILFEMLVGQPPFLAPTPTETQLKVINWENT--L--HIPPQVKLSPEAVD----LITKLCCSAEERLGRNGADDIKAH  305 (381)
T ss_pred             hhhHHHHHHhCCCCCcCCCHHHHHHHHHccccc--c--CCCCCCCCCHHHHH----HHHHHccCcccccCCCCHHHHhcC
Confidence            999888876665554332210  1111110000  0  00000111122233    4434  677788889999999753

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.96  E-value=1.4e-30  Score=294.59  Aligned_cols=180  Identities=24%  Similarity=0.279  Sum_probs=144.4

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +|+..+.||+|+||.||+++...                   ..+.+.+|++++++++||||+++++++.+     ...+
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~~   76 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQD-----KDNL   76 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEc-----CCEE
Confidence            68889999999999999987541                   12457789999999999999999999854     3458


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.+..
T Consensus        77 ~lv~E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~  153 (376)
T cd05598          77 YFVMDYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (376)
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHEEECCCCCEEEEeCCCCccccc
Confidence            99999999999999986433        2357899999999998   999999999999999999999999999853310


Q ss_pred             ccCC-------------------------------------CCCccccceeccccccccccccCCCCCCCCCCCCCCcCC
Q 002376          795 RVDN-------------------------------------QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESF  837 (929)
Q Consensus       795 ~~~~-------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~  837 (929)
                      ....                                     ..........+||+.|||||++.+..++.++||||+|++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvi  233 (376)
T cd05598         154 THDSKYYQKGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVI  233 (376)
T ss_pred             cccccccccccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccce
Confidence            0000                                     000001123579999999999999999999999999999


Q ss_pred             CCCcchhHHhhh
Q 002376          838 AGEFNIVKWVES  849 (929)
Q Consensus       838 ~~~~~~~~~~~~  849 (929)
                      +|++.++..++.
T Consensus       234 lyell~G~~Pf~  245 (376)
T cd05598         234 LYEMLVGQPPFL  245 (376)
T ss_pred             eeehhhCCCCCC
Confidence            999876665554

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.96  E-value=9.6e-31  Score=282.32  Aligned_cols=235  Identities=22%  Similarity=0.340  Sum_probs=168.5

Q ss_pred             CCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          663 FSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      |+..+.||+|+||.||+|....                     ..+.+.+|++.++.++||||+++++++...+. ....
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            4567899999999999886421                     12468899999999999999999998865443 2233


Q ss_pred             eEEEEEEecCCCCccccccccc--------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                      ..++||||+++|+|.+++...+              .++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHRDLAARNCMLREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchheEEECCCCeEEECCc
Confidence            4799999999999998874221              2357899999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      |+++.+......    .......++..|+|||++.+..++.++||||+|++++++.. ...++.....  .     .+..
T Consensus       158 g~~~~~~~~~~~----~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~~--~-----~~~~  226 (273)
T cd05035         158 GLSKKIYSGDYY----RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVEN--H-----EIYD  226 (273)
T ss_pred             cceeeccccccc----cccccccCCccccCHhhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCH--H-----HHHH
Confidence            999865322110    11112235678999999988899999999999988877544 3222221111  1     1111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ......... ....+..++.+ ++.+||+.||++||++.|+++.|+++
T Consensus       227 ~~~~~~~~~-~~~~~~~~~~~-li~~~l~~~p~~Rp~~~e~~~~l~~~  272 (273)
T cd05035         227 YLRHGNRLK-QPEDCLDELYD-LMYSCWRADPKDRPTFTKLREVLENI  272 (273)
T ss_pred             HHHcCCCCC-CCcCCCHHHHH-HHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            111110000 00112233333 78899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.4e-31  Score=295.76  Aligned_cols=231  Identities=20%  Similarity=0.234  Sum_probs=165.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+++...                   ..+.+.+|+.+++.++||||+++++++.+     ...
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~   75 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQD-----ENY   75 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEc-----CCe
Confidence            478889999999999999987641                   12346789999999999999999999854     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        76 ~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~  152 (364)
T cd05599          76 LYLIMEYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKL---GYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLK  152 (364)
T ss_pred             EEEEECCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEeecccceecc
Confidence            899999999999999886432        3467899999999998   99999999999999999999999999997653


Q ss_pred             cccCCCC--------------------------------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCc
Q 002376          794 ERVDNQS--------------------------------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEF  841 (929)
Q Consensus       794 ~~~~~~~--------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~  841 (929)
                      .......                                ........+||+.|||||++.+..++.++||||+|++++++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  232 (364)
T cd05599         153 KSHRTEFYRILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEM  232 (364)
T ss_pred             ccccccccccccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHh
Confidence            2110000                                00001124699999999999999999999999999998887


Q ss_pred             chhHHhhhcCCc-h-hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC---HHHHHH
Q 002376          842 NIVKWVESNLPE-N-VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG---IREALR  908 (929)
Q Consensus       842 ~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs---~~ev~~  908 (929)
                      ..+..++..... . ...+....  ...  .........+    .+++++.+|+. +|.+|++   ++|+++
T Consensus       233 ~~G~~Pf~~~~~~~~~~~i~~~~--~~~--~~~~~~~~s~----~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         233 LVGYPPFCSDNPQETYRKIINWK--ETL--QFPDEVPLSP----EAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             hcCCCCCCCCCHHHHHHHHHcCC--Ccc--CCCCCCCCCH----HHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            665554432221 0 11111000  000  0000001112    22336668886 9999998   888875

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.96  E-value=7.2e-31  Score=311.81  Aligned_cols=241  Identities=19%  Similarity=0.258  Sum_probs=173.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..++||+|+||.||+|....                   ..++|.+|++++++++||||+++++++.+.     ..
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~-----~~   76 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDG-----DP   76 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeC-----CE
Confidence            578899999999999999986541                   134688999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCcccccccc-------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          722 LALVYEFLSNGSLGDWIHGE-------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~-------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      .++||||+++|+|.++++..                   ..++.||++||+|||+.   +|+||||||+||+++.++.+|
T Consensus        77 lyLVMEY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHRDLKPeNILLd~dg~vK  153 (932)
T PRK13184         77 VYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHRDLKPDNILLGLFGEVV  153 (932)
T ss_pred             EEEEEEcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---CccccCCchheEEEcCCCCEE
Confidence            89999999999999987521                   12356899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCC------------CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhc
Q 002376          783 VGDFGLARFLLERVDNQ------------SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESN  850 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~  850 (929)
                      |+|||+++.........            .........+||+.|||||++.+..++.++||||+|++++++..+..++..
T Consensus       154 LiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~  233 (932)
T PRK13184        154 ILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRR  233 (932)
T ss_pred             EEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            99999998762111100            001112235799999999999999999999999999888887665544332


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHhhHHH
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI-GIREALRRLKSSQEI  916 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~ev~~~L~~~~~~  916 (929)
                      ...  .++...   ........  ......++..+.+++.+|++.||++|| +++++.+.|+...+.
T Consensus       234 ~~~--~ki~~~---~~i~~P~~--~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl~~Le~~lq~  293 (932)
T PRK13184        234 KKG--RKISYR---DVILSPIE--VAPYREIPPFLSQIAMKALAVDPAERYSSVQELKQDLEPHLQG  293 (932)
T ss_pred             cch--hhhhhh---hhccChhh--ccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhc
Confidence            111  111111   00000000  000011222333477799999999996 677788888877654

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.96  E-value=6.9e-31  Score=295.27  Aligned_cols=233  Identities=20%  Similarity=0.243  Sum_probs=166.8

Q ss_pred             HHHhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      +....++|+..+.||+|+||.||+++...                   ..+.+.+|+.+++.++||||+++++++..   
T Consensus        38 ~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~---  114 (370)
T cd05621          38 LQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQD---  114 (370)
T ss_pred             cCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc---
Confidence            33445789999999999999999887641                   12347789999999999999999999854   


Q ss_pred             CCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                        ....|+||||+++|+|.+++...+       .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+|
T Consensus       115 --~~~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~---~IvHrDLKp~NILl~~~~~~kL~DFG~a  189 (370)
T cd05621         115 --DKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSM---GLIHRDVKPDNMLLDKHGHLKLADFGTC  189 (370)
T ss_pred             --CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEEecccc
Confidence              345899999999999999886432       3467899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCC----CCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER----PSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPEL  863 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  863 (929)
                      +.....     ........+||+.|||||++.+..    ++.++||||+|+++|++.++..++.....  ...++.+.  
T Consensus       190 ~~~~~~-----~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~~~~~~~~~i~~~--  262 (370)
T cd05621         190 MKMDET-----GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIMDH--  262 (370)
T ss_pred             eecccC-----CceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCCCHHHHHHHHHhC--
Confidence            865321     111123457999999999987643    78999999999888876655544432211  11111110  


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCC--CCCHHHHHHH
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGG--RIGIREALRR  909 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~ev~~~  909 (929)
                            ......+....+...+++++.+|+..+|.+  ||++.|+++.
T Consensus       263 ------~~~~~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~h  304 (370)
T cd05621         263 ------KNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQH  304 (370)
T ss_pred             ------CcccCCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcC
Confidence                  000000000112233344666888755543  8899998764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=1.4e-31  Score=286.48  Aligned_cols=225  Identities=30%  Similarity=0.436  Sum_probs=157.4

Q ss_pred             CceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          665 HENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       665 ~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ..+.||.|+||.||+|.+..                     ..+.|.+|++.+++++||||++++|+|...+.     .+
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~-----~~   77 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEP-----LF   77 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSS-----EE
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccc-----cc
Confidence            35789999999999987660                     14689999999999999999999999974332     89


Q ss_pred             EEEEecCCCCcccccccc--c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE--R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~--~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++|+|.++++..  .        .++.|||+||+|||+.   +++||||+++||++++++.+||+|||+++...
T Consensus        78 lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~  154 (259)
T PF07714_consen   78 LVMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSN---NIIHGNLSPSNILLDSNGQVKLSDFGLSRPIS  154 (259)
T ss_dssp             EEEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHT---TEEEST-SGGGEEEETTTEEEEESTTTGEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccccccccccccccccccc
Confidence            999999999999998764  1        2367999999999998   89999999999999999999999999998652


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..    ..........+...|+|||++.+..++.++||||||++++|+.. ...++.....       ..+...+.....
T Consensus       155 ~~----~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~~~~~p~~~~~~-------~~~~~~~~~~~~  223 (259)
T PF07714_consen  155 EK----SKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILTLGKFPFSDYDN-------EEIIEKLKQGQR  223 (259)
T ss_dssp             TS----SSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHTTSSGTTTTSCH-------HHHHHHHHTTEE
T ss_pred             cc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccccccccccc
Confidence            11    11111122356788999999999899999999999987777544 2222222211       111111111111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                        ...+.....-+.+++.+||+.||++||+|+|++++|
T Consensus       224 --~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~~L  259 (259)
T PF07714_consen  224 --LPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQEL  259 (259)
T ss_dssp             --TTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHHHH
T ss_pred             --ceeccchhHHHHHHHHHHcCCChhhCcCHHHHHhcC
Confidence              111111112223377799999999999999999876

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.96  E-value=2e-31  Score=310.58  Aligned_cols=233  Identities=24%  Similarity=0.315  Sum_probs=179.9

Q ss_pred             HhhCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ..+-++....+||.|.||.||-|...                  +..+...+|+.++..++|||+|+++|+-.+++.   
T Consensus      1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRek--- 1308 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREK--- 1308 (1509)
T ss_pred             cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHH---
Confidence            34556777889999999999987654                  223456789999999999999999999766443   


Q ss_pred             ceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                        .+|.||||++|+|.+.+...        +.+..|++.|++|||+.   +||||||||+||+++.+|.+|.+|||.|+.
T Consensus      1309 --v~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~---gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~k 1383 (1509)
T KOG4645|consen 1309 --VYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEH---GIVHRDIKPANILLDFNGLIKYGDFGSAVK 1383 (1509)
T ss_pred             --HHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhc---CceecCCCccceeeecCCcEEeecccceeE
Confidence              79999999999999998743        23467999999999998   999999999999999999999999999988


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCC---CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGER---PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +......  -.......+||+.|||||++.+..   ...++||||+||+..||.++.-+|..+...+.-+..-...    
T Consensus      1384 i~~~~~~--~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dne~aIMy~V~~g---- 1457 (1509)
T KOG4645|consen 1384 IKNNAQT--MPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDNEWAIMYHVAAG---- 1457 (1509)
T ss_pred             ecCchhc--CCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccchhHHHhHHhcc----
Confidence            7543211  112335678999999999997654   6788999999999999988888887776633211111111    


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          ..++.++.++..-++++.+|++.||++|.++.|+++
T Consensus      1458 ----h~Pq~P~~ls~~g~dFle~Cl~~dP~~Rw~~~qlle 1493 (1509)
T KOG4645|consen 1458 ----HKPQIPERLSSEGRDFLEHCLEQDPKMRWTASQLLE 1493 (1509)
T ss_pred             ----CCCCCchhhhHhHHHHHHHHHhcCchhhhHHHHHHH
Confidence                122233345555556777999999999988876554

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2e-30  Score=293.35  Aligned_cols=180  Identities=24%  Similarity=0.278  Sum_probs=143.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+++...                   ..+.+.+|++++++++|||||++++++.+     ..+
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~-----~~~   75 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQD-----AQY   75 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEc-----CCe
Confidence            478889999999999999886541                   12457789999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---givHrDlkp~NIll~~~~~~kl~DfGla~~~~  152 (377)
T cd05629          76 LYLIMEFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKL---GFIHRDIKPDNILIDRGGHIKLSDFGLSTGFH  152 (377)
T ss_pred             eEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEEeecccccccc
Confidence            899999999999999886432        3467899999999998   99999999999999999999999999996432


Q ss_pred             cccCCC----------CC-------------------------------ccccceeccccccccccccCCCCCCCCCCCC
Q 002376          794 ERVDNQ----------SS-------------------------------ISSTHVFMGSIGYVPPEYGLGERPSTAGDVP  832 (929)
Q Consensus       794 ~~~~~~----------~~-------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~  832 (929)
                      ......          ..                               .......+||+.|||||++.+..++.++|||
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  232 (377)
T cd05629         153 KQHDSAYYQKLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWW  232 (377)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeE
Confidence            110000          00                               0000124799999999999999999999999


Q ss_pred             CCcCCCCCcchhHHhh
Q 002376          833 TSESFAGEFNIVKWVE  848 (929)
Q Consensus       833 s~g~~~~~~~~~~~~~  848 (929)
                      |+|++++++.++..++
T Consensus       233 SlGvil~elltG~~Pf  248 (377)
T cd05629         233 SLGAIMFECLIGWPPF  248 (377)
T ss_pred             ecchhhhhhhcCCCCC
Confidence            9999999987665544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.96  E-value=1.7e-30  Score=288.57  Aligned_cols=226  Identities=19%  Similarity=0.204  Sum_probs=165.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+++...                   ..+.+.+|+.+++.++||||+++++++..     ...
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~-----~~~   75 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQD-----KDN   75 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEec-----CCe
Confidence            468889999999999999887541                   23457789999999999999999998854     335


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.+
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~  152 (330)
T cd05601          76 LYLVMEYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQM---GYVHRDIKPENVLIDRTGHIKLADFGSAARL  152 (330)
T ss_pred             EEEEECCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEcccCchHheEECCCCCEEeccCCCCeEC
Confidence            899999999999999986431         2356899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccC------CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHHH
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL------GERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPELR  864 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~  864 (929)
                      ....     ........||+.|+|||++.      +..++.++||||+|+++|++.++..++.....  ....+....  
T Consensus       153 ~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~~--  225 (330)
T cd05601         153 TANK-----MVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIMNFQ--  225 (330)
T ss_pred             CCCC-----ceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCCCHHHHHHHHHcCC--
Confidence            3211     11122347899999999987      45688999999999999998766655433221  111111100  


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...  ...........+    .+++.+|++ +|++||++.+++.
T Consensus       226 ~~~--~~~~~~~~~~~~----~~li~~ll~-~p~~R~t~~~l~~  262 (330)
T cd05601         226 RFL--KFPEDPKVSSDF----LDLIQSLLC-GQKERLGYEGLCC  262 (330)
T ss_pred             Ccc--CCCCCCCCCHHH----HHHHHHHcc-ChhhCCCHHHHhC
Confidence            000  000001111222    236669997 9999999999874

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.96  E-value=2e-30  Score=286.34  Aligned_cols=215  Identities=25%  Similarity=0.293  Sum_probs=158.7

Q ss_pred             eeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          667 NLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      +.||+|+||.||+++..                     .....+.+|++++++++||||+++++++.+     ....|+|
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~lv   76 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQT-----EGKLYLI   76 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEc-----CCEEEEE
Confidence            57999999999976542                     112346689999999999999999999854     3358999


Q ss_pred             EEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          726 YEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....  
T Consensus        77 ~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~--  151 (318)
T cd05582          77 LDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESIDH--  151 (318)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHeEECCCCcEEEeeccCCcccCCC--
Confidence            99999999998886432        3367899999999998   9999999999999999999999999998754211  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          ........||+.|||||++.+..++.++||||+|++++++..+..++.....  .+..    ..........    
T Consensus       152 ----~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~~~~--~~~~----~~i~~~~~~~----  217 (318)
T cd05582         152 ----EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGSLPFQGKDR--KETM----TMILKAKLGM----  217 (318)
T ss_pred             ----CCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccCCCCCCCCCH--HHHH----HHHHcCCCCC----
Confidence                1112345799999999999998899999999999999998765544432211  1111    1111111111    


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIRE  905 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~e  905 (929)
                      +..+..-+++++.+|++.||++||++.+
T Consensus       218 p~~~~~~~~~li~~~l~~~P~~R~~a~~  245 (318)
T cd05582         218 PQFLSPEAQSLLRALFKRNPANRLGAGP  245 (318)
T ss_pred             CCCCCHHHHHHHHHHhhcCHhHcCCCCC
Confidence            1112222334777999999999999655

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.96  E-value=5.6e-31  Score=296.40  Aligned_cols=232  Identities=20%  Similarity=0.225  Sum_probs=166.5

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ...++|+..+.||+|+||.||+++...                   ..+.+.+|+.+++.++||||+++++++.+     
T Consensus        40 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~-----  114 (370)
T cd05596          40 MKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQD-----  114 (370)
T ss_pred             CCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEec-----
Confidence            345688999999999999999887641                   12346789999999999999999998854     


Q ss_pred             cceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ....|+||||+++|+|.++++...       .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~kL~DfG~~~~  191 (370)
T cd05596         115 DKYLYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGTCMK  191 (370)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEcCCCCEEEEeccceee
Confidence            345899999999999999886432       2357899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCC----CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhh
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGE----RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      .....     .......+||+.|||||++.+.    .++.++||||+|+++|++..+..++.....  ...    .....
T Consensus       192 ~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~----~~~i~  260 (370)
T cd05596         192 MDANG-----MVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL--VGT----YSKIM  260 (370)
T ss_pred             ccCCC-----cccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCCCH--HHH----HHHHH
Confidence            53211     1112335799999999998654    378999999999888776554444332211  000    01111


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCC--CCCHHHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGG--RIGIREALR  908 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~ev~~  908 (929)
                      ........+....++..+++++.+|++.+|++  ||++.|+++
T Consensus       261 ~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~  303 (370)
T cd05596         261 DHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKS  303 (370)
T ss_pred             cCCCcCCCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhc
Confidence            00000000000011223334777999999988  999999964

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.96  E-value=1.1e-30  Score=282.85  Aligned_cols=232  Identities=18%  Similarity=0.280  Sum_probs=167.2

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..++||+|+||.||+|....                 ..++|.+|++++++++||||+++++++...     ...+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   75 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVE-----NRIS   75 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEEC-----CEEE
Confidence            367788999999999999987531                 135688999999999999999999998653     3479


Q ss_pred             EEEEecCCCCcccccc----ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          724 LVYEFLSNGSLGDWIH----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~----~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      +||||+++|+|..+.+    ....++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++......    
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~----  148 (279)
T cd06619          76 ICTEFMDGGSLDVYRKIPEHVLGRIAVAVVKGLTYLWSL---KILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNS----  148 (279)
T ss_pred             EEEecCCCCChHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCCHHHEEECCCCCEEEeeCCcceecccc----
Confidence            9999999999976543    1224578999999999998   9999999999999999999999999999765211    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                          ......||..|+|||++.+..++.++||||+|++++++..+..++............................. .
T Consensus       149 ----~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  223 (279)
T cd06619         149 ----IAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQIQKNQGSLMPLQLLQCIVDEDPPVLPV-G  223 (279)
T ss_pred             ----cccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchhhcccccccchHHHHHHHhccCCCCCCC-C
Confidence                12335789999999999999999999999999888876655554432221100001111111100000000000 0


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .....+.+++.+|++.+|++||+++|+++.
T Consensus       224 ~~~~~~~~li~~~l~~~P~~Rp~~~eil~~  253 (279)
T cd06619         224 QFSEKFVHFITQCMRKQPKERPAPENLMDH  253 (279)
T ss_pred             cCCHHHHHHHHHHhhCChhhCCCHHHHhcC
Confidence            111122347779999999999999998754

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.96  E-value=1.8e-30  Score=279.22  Aligned_cols=232  Identities=21%  Similarity=0.258  Sum_probs=169.0

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||+||+|++.                    ...++|.+|+.++++++||||+++++++...     .
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~   78 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKS-----R   78 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecC-----C
Confidence            56888999999999999998652                    1234688999999999999999999988543     3


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++....         .++.+++.|++|||+.   +|+||||||+||++++++.+|++|||+++.
T Consensus        79 ~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~di~p~nili~~~~~~~l~dfg~~~~  155 (266)
T cd05033          79 PVMIITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRR  155 (266)
T ss_pred             ceEEEEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCCEEECccchhhc
Confidence            3799999999999999986422         2357899999999997   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ......    ........+++.|+|||.+.+..++.++||||+|++++++.+ ...++....       +..+.......
T Consensus       156 ~~~~~~----~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~~-------~~~~~~~~~~~  224 (266)
T cd05033         156 LEDSEA----TYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDMS-------NQDVIKAVEDG  224 (266)
T ss_pred             cccccc----ceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCCC-------HHHHHHHHHcC
Confidence            631111    011112245678999999999999999999999988777432 222221111       11111111110


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ...  .......+.+.+++.+||+.+|++||+++|+++.|+++
T Consensus       225 ~~~--~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~l~~~  265 (266)
T cd05033         225 YRL--PPPMDCPSALYQLMLDCWQKDRNERPTFSQIVSTLDKM  265 (266)
T ss_pred             CCC--CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            000  00011122333488899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.96  E-value=1.1e-30  Score=286.77  Aligned_cols=236  Identities=20%  Similarity=0.332  Sum_probs=169.5

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|...+.||+|+||.||+++..                        ...+++.+|+.+++.+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456788899999999999987521                        1124678899999999 899999999998543


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                           ...++||||+++|+|.+++...+                        .++.|++.||+|||+.   +|+||||||
T Consensus        94 -----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~dlkp  165 (304)
T cd05101          94 -----GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHRDLAA  165 (304)
T ss_pred             -----CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---Ceeeccccc
Confidence                 34799999999999999986432                        1245899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +||++++++.+||+|||+++.+......    .......+++.|+|||++.+..++.++||||+|++++++.. ...++.
T Consensus       166 ~Nili~~~~~~kl~D~g~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~  241 (304)
T cd05101         166 RNVLVTENNVMKIADFGLARDVNNIDYY----KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  241 (304)
T ss_pred             ceEEEcCCCcEEECCCccceeccccccc----ccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcc
Confidence            9999999999999999999865321111    11122346778999999999899999999999987766432 111111


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..+  ..+.     ........... ....+...+ .+++.+||+.+|++||+|.|+++.|+++...
T Consensus       242 ~~~--~~~~-----~~~~~~~~~~~-~~~~~~~~~-~~li~~cl~~~p~~Rps~~e~l~~l~~~~~~  299 (304)
T cd05101         242 GIP--VEEL-----FKLLKEGHRMD-KPANCTNEL-YMMMRDCWHAIPSHRPTFKQLVEDLDRILTL  299 (304)
T ss_pred             cCC--HHHH-----HHHHHcCCcCC-CCCCCCHHH-HHHHHHHcccChhhCCCHHHHHHHHHHHHHh
Confidence            111  1111     11111110000 001112223 3377899999999999999999999988764

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=3.1e-30  Score=277.43  Aligned_cols=234  Identities=22%  Similarity=0.299  Sum_probs=171.2

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|+...                   ....|.+|+++++.++||||+++++++.+.     ..
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~   76 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIED-----NE   76 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEEC-----Ce
Confidence            578889999999999999987531                   124678999999999999999999998643     34


Q ss_pred             EEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      .++||||+++|+|.+++...            ..++.+++.||+|||+.   +++||||||+||+++.++.++|+|||++
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~nil~~~~~~~~l~d~g~~  153 (267)
T cd08228          77 LNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEEecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCCHHHEEEcCCCCEEECccccc
Confidence            79999999999999877421            12356899999999998   9999999999999999999999999998


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +......      .......|++.|+|||++.+..++.++||||+|++++++.....++........     .+......
T Consensus       154 ~~~~~~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~~~~~~-----~~~~~~~~  222 (267)
T cd08228         154 RFFSSKT------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLF-----SLCQKIEQ  222 (267)
T ss_pred             eeccchh------HHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccccccHH-----HHHHHHhc
Confidence            8653211      111234688999999999988899999999999877765443332211110111     11111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ... .....+.....+.+++.+||+.+|++||++.||++.+++++
T Consensus       223 ~~~-~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~~~~~~  266 (267)
T cd08228         223 CDY-PPLPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQIAKQMH  266 (267)
T ss_pred             CCC-CCCChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHHHHHhc
Confidence            000 00111122233445888999999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.96  E-value=2.4e-30  Score=286.86  Aligned_cols=220  Identities=25%  Similarity=0.281  Sum_probs=156.6

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+++...                   ..+.+.+|+.++.++ +||||+++++++...     ...++||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~-----~~~~lv~   75 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTE-----SRLFFVI   75 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeC-----CEEEEEE
Confidence            469999999999987541                   123466788888776 899999999998543     3589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        76 E~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~---  149 (329)
T cd05618          76 EYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRP---  149 (329)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCCEEEeeCCccccccCC---
Confidence            9999999988875432        3467899999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhhccChHHHHhhcccchhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                         ........||+.|+|||++.+..++.++||||+|++++++..+..++..... . ........+........   ..
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~---~~  223 (329)
T cd05618         150 ---GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQ---IR  223 (329)
T ss_pred             ---CCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHHHhcCC---CC
Confidence               1112345799999999999999999999999999888887666555432111 0 00000011111111100   01


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .+..+...+++++.+|++.||++||++
T Consensus       224 ~p~~~~~~~~~ll~~~L~~dP~~R~~~  250 (329)
T cd05618         224 IPRSLSVKAASVLKSFLNKDPKERLGC  250 (329)
T ss_pred             CCCCCCHHHHHHHHHHhcCCHHHcCCC
Confidence            111122223347779999999999984

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=1.4e-30  Score=283.31  Aligned_cols=243  Identities=23%  Similarity=0.246  Sum_probs=174.0

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      +.++++.++.++|+..+.||+|+||.||++....               ...++.+|+.+++++ +||||+++++++...
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   87 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPNVVKFYGMYYKK   87 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCCeeeeeeeeeec
Confidence            5567777889999999999999999999986541               135678899999999 699999999998655


Q ss_pred             CCCCcceEEEEEEecCCCCcccccccc----c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGE----R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~----~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      +.......++||||+++|+|.++++..    .        ..+.|++.|+.|||+.   +|+|||+||+||++++++.+|
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~k  164 (286)
T cd06638          88 DVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVN---KTIHRDVKGNNILLTTEGGVK  164 (286)
T ss_pred             ccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhC---CccccCCCHHhEEECCCCCEE
Confidence            444455689999999999999876421    1        1356899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      ++|||+++.+....      .......|++.|+|||++..     ..++.++||||+|++++++.....++..... ...
T Consensus       165 l~dfg~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~~-~~~  237 (286)
T cd06638         165 LVDFGVSAQLTSTR------LRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLHP-MRA  237 (286)
T ss_pred             EccCCceeecccCC------CccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCch-hHH
Confidence            99999998653211      11223468999999998753     4578999999999887776544333222111 011


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...  ...    ........+....+-+.+++.+||+.||++||++.|+++.
T Consensus       238 ~~~--~~~----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  283 (286)
T cd06638         238 LFK--IPR----NPPPTLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQH  283 (286)
T ss_pred             Hhh--ccc----cCCCcccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhc
Confidence            000  000    0000000000011122337779999999999999999864

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=6.1e-30  Score=277.91  Aligned_cols=240  Identities=23%  Similarity=0.325  Sum_probs=168.8

Q ss_pred             CCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .|+..+.||+|+||.||.+++.                     ...+.+.+|++++++++|||++++++++...+   ..
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~---~~   81 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG---GN   81 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCC---CC
Confidence            4677889999999999987521                     11357889999999999999999999886532   23


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++++|.+++....         .++.+++.||+|||+.   +++||||||+||++++++.+||+|||+++.
T Consensus        82 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~  158 (284)
T cd05079          82 GIKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTKA  158 (284)
T ss_pred             ceEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccchheEEEcCCCCEEECCCccccc
Confidence            4799999999999999885322         2356899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhcc--------ChH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVL--------DPE  862 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~--------~~~  862 (929)
                      +......   ........|+..|+|||++.+..++.++||||+|++++++.+...+.. .+. ...+..        ...
T Consensus       159 ~~~~~~~---~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~ellt~~~~~~-~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd05079         159 IETDKEY---YTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLYELLTYCDSES-SPMTLFLKMIGPTHGQMTVTR  234 (284)
T ss_pred             cccCccc---eeecCCCCCCccccCHHHhccCCCCccccchhhhhhhhhhhcCCCCCc-cccchhhhhcccccccccHHH
Confidence            5322110   011123457778999999998899999999999999988654211100 000 000000        000


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ......... .......+..++. +++.+|++.+|++||++.|+++.++++
T Consensus       235 ~~~~~~~~~-~~~~~~~~~~~~~-~li~~~l~~~p~~Rpt~~~il~~l~~~  283 (284)
T cd05079         235 LVRVLEEGK-RLPRPPNCPEEVY-QLMRKCWEFQPSKRTTFQNLIEGFEAI  283 (284)
T ss_pred             HHHHHHcCc-cCCCCCCCCHHHH-HHHHHHccCCcccCcCHHHHHHHHHhh
Confidence            000000000 0000011122333 388899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.96  E-value=2.5e-30  Score=290.96  Aligned_cols=180  Identities=24%  Similarity=0.264  Sum_probs=144.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+++...                   ..+.+.+|+.++.+++||||+++++++.+     ...
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~-----~~~   75 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQD-----KLN   75 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEec-----CCe
Confidence            478889999999999999987641                   12356789999999999999999999854     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~---givHrDlKp~NILi~~~~~vkL~DFGla~~~~  152 (363)
T cd05628          76 LYLIMEFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQL---GFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLK  152 (363)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCCEEEeeccCccccc
Confidence            899999999999999886432        3467899999999998   99999999999999999999999999998653


Q ss_pred             cccCCC-----------------------------CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 002376          794 ERVDNQ-----------------------------SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       794 ~~~~~~-----------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ......                             .........+||+.|||||++.+..++.++||||+|+++|++.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G  232 (363)
T cd05628         153 KAHRTEFYRNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (363)
T ss_pred             ccccccccccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhC
Confidence            211000                             000011245799999999999999999999999999888887665


Q ss_pred             HHhh
Q 002376          845 KWVE  848 (929)
Q Consensus       845 ~~~~  848 (929)
                      ..++
T Consensus       233 ~~Pf  236 (363)
T cd05628         233 YPPF  236 (363)
T ss_pred             CCCC
Confidence            5544

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.4e-30  Score=279.28  Aligned_cols=231  Identities=24%  Similarity=0.340  Sum_probs=168.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..+.||+|+||.||+|....              ..++|.+|++++++++||||+++++++...     ...++|
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~lv   79 (261)
T cd05068           5 RTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTLE-----EPIYIV   79 (261)
T ss_pred             hhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCCccceeEEEecC-----CCeeee
Confidence            4568888999999999999987531              246789999999999999999999988543     347999


Q ss_pred             EEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++++|.+++....          .++.+++.|++|||+.   +|+||||||+||++++++.+||+|||+++.....
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~  156 (261)
T cd05068          80 TELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQ---NYIHRDLAARNVLVGENNICKVADFGLARVIKED  156 (261)
T ss_pred             eecccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCcceEEEcCCCCEEECCcceEEEccCC
Confidence            99999999999986432          2356899999999998   8999999999999999999999999999876421


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      ..     .......++..|+|||++.+..++.++||||+|++++++.. ...++.....  .     .+.......... 
T Consensus       157 ~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~-----~~~~~~~~~~~~-  223 (261)
T cd05068         157 IY-----EAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTN--A-----EVLQQVDQGYRM-  223 (261)
T ss_pred             cc-----cccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCCH--H-----HHHHHHHcCCCC-
Confidence            10     01111233468999999999999999999999987776543 2222211111  1     111111000000 


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                       .........+.+++.+|++.+|++||+|.++.+.|++
T Consensus       224 -~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~~l~~  260 (261)
T cd05068         224 -PCPPGCPKELYDIMLDCWKEDPDDRPTFETLQWKLED  260 (261)
T ss_pred             -CCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHHHHhc
Confidence             0001111223337789999999999999999999986

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=2.9e-30  Score=289.45  Aligned_cols=232  Identities=22%  Similarity=0.227  Sum_probs=169.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|+...                   ..+.+.+|+++++.++||||+++++++.+     ...
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~   75 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQD-----EEH   75 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheec-----CCe
Confidence            468889999999999999987651                   23457889999999999999999998854     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        76 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~  152 (350)
T cd05573          76 LYLVMEYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKL---GFIHRDIKPDNILIDADGHIKLADFGLCKKMN  152 (350)
T ss_pred             EEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEeecCCCCccCc
Confidence            899999999999999886432        2367899999999997   99999999999999999999999999998654


Q ss_pred             cccCC-----------------------CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhc
Q 002376          794 ERVDN-----------------------QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESN  850 (929)
Q Consensus       794 ~~~~~-----------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~  850 (929)
                      .....                       ...........||+.|+|||++.+..++.++||||+|++++++..+..++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~  232 (350)
T cd05573         153 KAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYS  232 (350)
T ss_pred             ccCcccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCC
Confidence            32100                       0000112345799999999999999999999999999999987766555433


Q ss_pred             CCc--hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-HHHHHHH
Q 002376          851 LPE--NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-IREALRR  909 (929)
Q Consensus       851 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~ev~~~  909 (929)
                      ...  ....+.........+    ....    +...+.+++.+|+. ||++||+ ++|+++.
T Consensus       233 ~~~~~~~~~i~~~~~~~~~p----~~~~----~~~~~~~li~~ll~-dp~~R~~s~~~ll~h  285 (350)
T cd05573         233 DTLQETYNKIINWKESLRFP----PDPP----VSPEAIDLICRLLC-DPEDRLGSFEEIKSH  285 (350)
T ss_pred             CCHHHHHHHHhccCCcccCC----CCCC----CCHHHHHHHHHHcc-ChhhcCCCHHHHhcC
Confidence            221  111111100000000    0000    11222336669997 9999999 9999863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=1.2e-30  Score=280.63  Aligned_cols=234  Identities=23%  Similarity=0.303  Sum_probs=171.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||++....                   ..++|.+|+.+++.++||||+++++++...     ..
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~~   76 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-----NE   76 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeC-----Ce
Confidence            467788999999999999987531                   124678899999999999999999998643     34


Q ss_pred             EEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      .++||||+++++|.++++..            ..++.+++.|++|||+.   +++|+||||+||+++.++.+|++|||++
T Consensus        77 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~  153 (267)
T cd08229          77 LNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEEecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEECcchhh
Confidence            89999999999999887521            12256899999999998   9999999999999999999999999998


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +......      .......|+..|+|||++.+..++.++||||+|++++++.....++........+... .+...   
T Consensus       154 ~~~~~~~------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~-~~~~~---  223 (267)
T cd08229         154 RFFSSKT------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCK-KIEQC---  223 (267)
T ss_pred             hccccCC------cccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCCCCcccccchHHHHhh-hhhcC---
Confidence            8653211      1122346899999999999889999999999998877765444333211111111111 11110   


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      .  ............+++++.+||+.||++||||.+|++.++++.
T Consensus       224 ~--~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  266 (267)
T cd08229         224 D--YPPLPSDHYSEELRQLVNMCINPDPEKRPDITYVYDVAKRMH  266 (267)
T ss_pred             C--CCCCCcccccHHHHHHHHHhcCCCcccCCCHHHHHHHHhhhc
Confidence            0  000011122333444777999999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.96  E-value=7.2e-31  Score=299.82  Aligned_cols=242  Identities=19%  Similarity=0.228  Sum_probs=173.6

Q ss_pred             CCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccC-Cccccceee-ecccCCCCC-cceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVR-HRNLVKLIT-SCSSLDSKN-MEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~-Hpniv~l~~-~~~~~~~~~-~~~~  722 (929)
                      ++++.++|.+|||+.||.+...+                ..+...+||++|++++ |||||.+++ ........+ ..++
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~Ev  117 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEV  117 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEE
Confidence            44567899999999999987653                2456789999999997 999999999 443333333 4678


Q ss_pred             EEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +|.||||++|+|-|++..+          .++..|+|+|+++||.. .++|||||||-+||||+.++..||||||-|.-.
T Consensus       118 llLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~-~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~  196 (738)
T KOG1989|consen  118 LLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYL-KPPIIHRDLKIENVLLSADGNYKLCDFGSATTK  196 (738)
T ss_pred             EeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcC-CCccchhhhhhhheEEcCCCCEEeCcccccccc
Confidence            9999999999999998732          24567999999999996 789999999999999999999999999987632


Q ss_pred             ccccCCCCCc---cccceecccccccccccc---CCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          793 LERVDNQSSI---SSTHVFMGSIGYVPPEYG---LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       793 ~~~~~~~~~~---~~~~~~~gt~~y~aPE~~---~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      ..........   ...-....|+.|+|||++   .+..+++|+|||++||++|.+..+..++.....  ..+++....  
T Consensus       197 ~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~--laIlng~Y~--  272 (738)
T KOG1989|consen  197 ILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK--LAILNGNYS--  272 (738)
T ss_pred             cCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc--eeEEecccc--
Confidence            1111000000   001122469999999975   567799999999999877765544444432211  122222211  


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ++.    .+.    ....+++|+..||++||++||++.+|+..+-++...
T Consensus       273 ~P~----~p~----ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  273 FPP----FPN----YSDRLKDLIRTMLQPNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             CCC----Ccc----HHHHHHHHHHHHhccCcccCCCHHHHHHHHHHHhcC
Confidence            111    011    223334477799999999999999999998887654

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=1.3e-30  Score=278.68  Aligned_cols=229  Identities=24%  Similarity=0.340  Sum_probs=166.5

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||+|++.+              ..++|.+|++++++++||||+++++++...+     ..++||
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~   78 (256)
T cd05113           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQR-----PIYIVT   78 (256)
T ss_pred             HHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCCeeeEEEEEccCC-----CcEEEE
Confidence            356778899999999999886531              2457899999999999999999999985433     379999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.+++....         .++.||+.|++|||+.   +++||||||+||++++++.+||+|||.++...... 
T Consensus        79 e~~~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~-  154 (256)
T cd05113          79 EYMSNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESK---QFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDE-  154 (256)
T ss_pred             EcCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCCEEECCCccceecCCCc-
Confidence            9999999999886422         2367899999999998   99999999999999999999999999988653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                          ........++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+..+. +....   ..... 
T Consensus       155 ----~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~~--~~~~~~-~~~~~---~~~~~-  223 (256)
T cd05113         155 ----YTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPYERFNN--SETVEK-VSQGL---RLYRP-  223 (256)
T ss_pred             ----eeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCcCcCCH--HHHHHH-HhcCC---CCCCC-
Confidence                011112245678999999998889999999999988877643 3333322221  111111 11100   00000 


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                        ......+.+++.+||+.+|++||++.++++.|+
T Consensus       224 --~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~~~  256 (256)
T cd05113         224 --HLASEKVYAIMYSCWHEKAEERPTFQQLLSSIE  256 (256)
T ss_pred             --CCCCHHHHHHHHHHcCCCcccCCCHHHHHHhhC
Confidence              011122233777999999999999999998764

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.96  E-value=8e-31  Score=271.72  Aligned_cols=240  Identities=23%  Similarity=0.305  Sum_probs=168.4

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCcc-ccceeeecccCCC-CCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRN-LVKLITSCSSLDS-KNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpn-iv~l~~~~~~~~~-~~~~~  721 (929)
                      .|...++||+|+||+||+|+...                  ......+|+.++++++|+| ||++++++.+.+. .....
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            45556789999999999998761                  2234579999999999999 9999999976542 22346


Q ss_pred             EEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      .++|+||++ -+|.+++....            .+..|+++||+|||++   +|+||||||.||||+++|.+||+|||+|
T Consensus        92 l~lvfe~~d-~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHRDLKPQNlLi~~~G~lKlaDFGlA  167 (323)
T KOG0594|consen   92 LYLVFEFLD-RDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSH---GILHRDLKPQNLLISSSGVLKLADFGLA  167 (323)
T ss_pred             EEEEEEeec-ccHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCcceEEECCCCcEeeeccchH
Confidence            899999995 58888886433            2367999999999999   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc---------------
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE---------------  853 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---------------  853 (929)
                      +...-.      ....+..++|..|+|||++.+. .|++..||||.||+..|+....-.+....+               
T Consensus       168 ra~~ip------~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~  241 (323)
T KOG0594|consen  168 RAFSIP------MRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPN  241 (323)
T ss_pred             HHhcCC------cccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCC
Confidence            965311      1224456889999999999988 699999999999887665332221111111               


Q ss_pred             --hhhhccC-hHHHHhhcccchhhhhhhHHH----HHHHHHHhccccCCCCCCCCCHHHHHHH--HHhh
Q 002376          854 --NVLQVLD-PELRQLMTSNESQTIQLHDCL----ITIIGSVGLSCTTESPGGRIGIREALRR--LKSS  913 (929)
Q Consensus       854 --~~~~~~~-~~l~~~~~~~~~~~~~~~~~~----~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~  913 (929)
                        .+..+.. ++....++.... .......+    ....+ ++.+|++.+|.+|.|++.++..  +.++
T Consensus       242 e~~Wp~v~~~~~~k~~f~~~~~-~~~l~~~~~~~~~~~~d-ll~~~L~y~p~~R~Sa~~al~h~yf~~~  308 (323)
T KOG0594|consen  242 EKDWPGVSSLPDYKAPFPKWPG-PKDLSSILPKLDPDGIE-LLSKLLQYDPAKRISAKGALTHPYFSEL  308 (323)
T ss_pred             ccCCCCccccccccccCcCCCC-ccchHHhccccCccHHH-HHHHHhccCcccCcCHHHHhcChhhccc
Confidence              1111110 000100000000 00001111    12333 7789999999999999999876  5554

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1e-30  Score=298.76  Aligned_cols=171  Identities=21%  Similarity=0.290  Sum_probs=140.9

Q ss_pred             hCCCCCceeecccCceeEEeccccCc----------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS----------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~----------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ..+|...+.||+|+||.||++.+...          ...+.+|++++++++|||||++++++...     +..++||||+
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~~~~~~-----~~~~lv~e~~  242 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLDVRVVG-----GLTCLVLPKY  242 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEEEEEEC-----CEEEEEEEcc
Confidence            45799999999999999999987632          23567899999999999999999998543     3479999999


Q ss_pred             CCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCC
Q 002376          730 SNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       730 ~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~  800 (929)
                      . |+|.+++...         ..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.......   
T Consensus       243 ~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~---  315 (461)
T PHA03211        243 R-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGE---GIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWS---  315 (461)
T ss_pred             C-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEECcCCHHHEEECCCCCEEEcccCCceecccccc---
Confidence            4 7888887532         23467899999999998   999999999999999999999999999986532111   


Q ss_pred             CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch
Q 002376          801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                       ........||+.|||||++.+..++.++||||+|+++|++.+
T Consensus       316 -~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~  357 (461)
T PHA03211        316 -TPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAV  357 (461)
T ss_pred             -cccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHH
Confidence             111224579999999999999999999999999999888644

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.96  E-value=2.1e-30  Score=279.20  Aligned_cols=228  Identities=24%  Similarity=0.290  Sum_probs=156.5

Q ss_pred             eeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          667 NLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +.||+|+||.||+|+..                   .....|.+|+.++++++||||+++++++.+..     ..++|||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-----~~~lv~e   75 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVT-----PYLLVME   75 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC-----CcEEEEE
Confidence            35899999999998532                   01246888999999999999999999985433     3799999


Q ss_pred             ecCCCCccccccccc-------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          728 FLSNGSLGDWIHGER-------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~-------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+++|+|.++++..+             ..+.|++.|++|||+.   +++||||||+||++++++.+|++|||+++....
T Consensus        76 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~  152 (269)
T cd05087          76 FCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKN---NFIHSDLALRNCLLTADLTVKIGDYGLSHNKYK  152 (269)
T ss_pred             CCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CEeccccCcceEEEcCCCcEEECCccccccccC
Confidence            999999999886321             2356899999999998   999999999999999999999999999875321


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-------CCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-------RPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-------~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      .    ..........|+..|+|||++.+.       .++.++||||+|++++++.. ...++.....  .+.........
T Consensus       153 ~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~~--~~~~~~~~~~~  226 (269)
T cd05087         153 E----DYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLSD--EQVLTYTVREQ  226 (269)
T ss_pred             c----ceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCCh--HHHHHHHhhcc
Confidence            1    001112234578899999998642       35889999999988777542 3333322211  01000000000


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      .....  .+.......+.+.+++.+|| .+|++|||++||++.|+
T Consensus       227 ~~~~~--~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~~l~  268 (269)
T cd05087         227 QLKLP--KPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHLLLS  268 (269)
T ss_pred             cCCCC--CCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHHHhc
Confidence            00000  00000011222334777999 58999999999998875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=7.8e-30  Score=279.66  Aligned_cols=232  Identities=23%  Similarity=0.293  Sum_probs=168.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|.+..                   ..+.|.+|++++.++ +||||+++++++...     .
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~-----~   81 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----G   81 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCC-----C
Confidence            467788999999999999996431                   124678899999999 899999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          721 FLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                      ..|+||||+++|+|.++++..+                        .++.|++.|++|||+.   +|+||||||+|||++
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dlkp~Nili~  158 (303)
T cd05088          82 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG  158 (303)
T ss_pred             CceEEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEec
Confidence            4899999999999999886321                        2356899999999998   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~  855 (929)
                      +++.+||+|||+++.....       .......++..|+|||++.+..++.++||||+|++++++.+ ...++.....  
T Consensus       159 ~~~~~kl~dfg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--  229 (303)
T cd05088         159 ENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--  229 (303)
T ss_pred             CCCcEEeCccccCcccchh-------hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccCCh--
Confidence            9999999999998642111       01111234678999999988889999999999988887653 3322211111  


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .+     ..........  ...+......+.+++.+||+.+|++||+++++++.++++.+.
T Consensus       230 ~~-----~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~l~~~~~~  283 (303)
T cd05088         230 AE-----LYEKLPQGYR--LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  283 (303)
T ss_pred             HH-----HHHHHhcCCc--CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence            11     1111111000  000001112233478899999999999999999999987665

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.6e-30  Score=282.60  Aligned_cols=225  Identities=25%  Similarity=0.306  Sum_probs=164.4

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +|+..++||+|+||+||++....                   ..+.+.+|+.++++++||||+++++++...     ...
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~   75 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETK-----DAL   75 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCC-----CeE
Confidence            47778999999999999987541                   113467899999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++||||+++|+|.+++....          .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        76 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~  152 (285)
T cd05605          76 CLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE---RIVYRDLKPENILLDDYGHIRISDLGLAVEI  152 (285)
T ss_pred             EEEEeccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEecCCCHHHEEECCCCCEEEeeCCCceec
Confidence            99999999999998875321          2357899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       .......|++.|||||++.+..++.++||||+|+++|++..+..++..... ...+.+...+..    ..
T Consensus       153 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~~~~~~~~~~~~~~~~----~~  221 (285)
T cd05605         153 PEG-------ETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKE----DQ  221 (285)
T ss_pred             CCC-------CccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCCchhhHHHHHHHHhhh----cc
Confidence            311       111234789999999999998999999999999887776554443332211 000111111111    00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                         ...+..+...+++++.+||+.||++||     +++++++
T Consensus       222 ---~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05605         222 ---EEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKA  260 (285)
T ss_pred             ---cccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhc
Confidence               011112233344477899999999999     7888865

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.96  E-value=8.6e-31  Score=287.38  Aligned_cols=174  Identities=25%  Similarity=0.334  Sum_probs=139.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|+...                 ....+.+|+.+++.++||||+++++++.+.     ...
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~~   78 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTK-----ETL   78 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecC-----CeE
Confidence            4689999999999999999987641                 123577899999999999999999998543     358


Q ss_pred             EEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++||||++ ++|.+++...         +.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        79 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~  154 (303)
T cd07869          79 TLVFEYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQR---YILHRDLKPQNLLISDTGELKLADFGLARAKS  154 (303)
T ss_pred             EEEEECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECCCCcceecc
Confidence            99999995 6787776532         23367899999999998   99999999999999999999999999987542


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ..      ........||+.|||||++.+. .++.++||||+|++++++..+..++
T Consensus       155 ~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  204 (303)
T cd07869         155 VP------SHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAF  204 (303)
T ss_pred             CC------CccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            11      0112234689999999998764 5789999999998888765554444

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.96  E-value=1.6e-30  Score=292.57  Aligned_cols=238  Identities=20%  Similarity=0.252  Sum_probs=169.0

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      ..++....++|+..+.||+|+||.||+++...                   ..+.+.+|+.+++.++||||+++++++..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            44556667899999999999999999887651                   12346789999999999999999999853


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                           ....++||||+++|+|.++++...       .++.|++.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       115 -----~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDLkp~NIll~~~~~ikL~Df  186 (371)
T cd05622         115 -----DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADF  186 (371)
T ss_pred             -----CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHEEECCCCCEEEEeC
Confidence                 345899999999999999886432       3367899999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC----CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER----PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPE  862 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (929)
                      |+++.+...     ........+||+.|||||++.+..    ++.++||||+|+++|++..+..++.....  ....   
T Consensus       187 G~a~~~~~~-----~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~---  256 (371)
T cd05622         187 GTCMKMNKE-----GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSL--VGTY---  256 (371)
T ss_pred             CceeEcCcC-----CcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCCCH--HHHH---
Confidence            999865321     111123457999999999987543    78999999999888887655544432221  1111   


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCC--CCCHHHHHHH
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGG--RIGIREALRR  909 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~ev~~~  909 (929)
                       .................+...+++++.+|+..++.+  ||+++|+.+.
T Consensus       257 -~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h  304 (371)
T cd05622         257 -SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRH  304 (371)
T ss_pred             -HHHHcCCCcccCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcC
Confidence             111100000000000112233344777999743433  7788888764

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.96  E-value=9.7e-31  Score=284.66  Aligned_cols=171  Identities=26%  Similarity=0.371  Sum_probs=138.0

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...++||+|+||.||+|+...                 ....+.+|++++++++||||+++++++..     ....+
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~   79 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT-----ERCLT   79 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcC-----CCeEE
Confidence            578889999999999999986541                 13467799999999999999999999854     33589


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||++ |+|.+++....         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus        80 lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~  155 (288)
T cd07871          80 LVFEYLD-SDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKR---KILHRDLKPQNLLINEKGELKLADFGLARAKSV  155 (288)
T ss_pred             EEEeCCC-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEECcCcceeeccC
Confidence            9999997 58988775322         2357899999999998   999999999999999999999999999975421


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      .      ........|++.|+|||++.+ ..++.++||||+|++++++.+...
T Consensus       156 ~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~  202 (288)
T cd07871         156 P------TKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRP  202 (288)
T ss_pred             C------CccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            1      111223468999999998876 468999999999988887655543

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.96  E-value=1e-30  Score=284.51  Aligned_cols=234  Identities=19%  Similarity=0.255  Sum_probs=169.0

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      ..++|+..+.||+|+||.||+|..+                      .....+.+|+.++++++||||+++++++...+ 
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-   82 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ-   82 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC-
Confidence            4568899999999999999987432                      01235778999999999999999999985433 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                          ..++||||+++|+|.++++...                  .++.|++.||+|||+.   +|+||||||+||+++++
T Consensus        83 ----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dikp~nili~~~  155 (288)
T cd05061          83 ----PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHRDLAARNCMVAHD  155 (288)
T ss_pred             ----CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCCChheEEEcCC
Confidence                3799999999999999986321                  2356899999999998   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                      +.+|++|||+++.......    ........++..|+|||.+.+..++.++||||+|++++++.. ...++....  .. 
T Consensus       156 ~~~~L~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~--~~-  228 (288)
T cd05061         156 FTVKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS--NE-  228 (288)
T ss_pred             CcEEECcCCcccccccccc----ccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC--HH-
Confidence            9999999999986532111    011122345778999999999899999999999988877543 222221111  11 


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                          ............  ...+.....+++++.+|++.||++||||.|+++.+++.
T Consensus       229 ----~~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~  278 (288)
T cd05061         229 ----QVLKFVMDGGYL--DQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDD  278 (288)
T ss_pred             ----HHHHHHHcCCCC--CCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhh
Confidence                111111000000  00011122334477899999999999999999888874

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=6.5e-31  Score=281.75  Aligned_cols=233  Identities=24%  Similarity=0.331  Sum_probs=171.1

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++.++|+..+.||+|+||.||+|....               ..+++.+|+++++.++||||+++++++...+     ..
T Consensus         3 ~~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-----~~   77 (261)
T cd05148           3 RPREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGE-----PV   77 (261)
T ss_pred             CcHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCC-----Ce
Confidence            445678888999999999999987642               2457889999999999999999999985433     47


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++||||+++|+|.++++...          .++.+++.|++|||+.   +|+||||||+||++++++.+||+|||.++..
T Consensus        78 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~  154 (261)
T cd05148          78 YIITELMEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQ---NSIHRDLAARNILVGEDLVCKVADFGLARLI  154 (261)
T ss_pred             EEEEeecccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccCcceEEEcCCceEEEccccchhhc
Confidence            99999999999999986422          2356899999999998   8999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....      .......++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+.++..... .  ..
T Consensus       155 ~~~~------~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~~~~~~--~~~~~~~~~~-~--~~  223 (261)
T cd05148         155 KEDV------YLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYPGMNN--HEVYDQITAG-Y--RM  223 (261)
T ss_pred             CCcc------ccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCCCcCCH--HHHHHHHHhC-C--cC
Confidence            3211      11112345778999999988899999999999987776533 2222221111  1111111110 0  00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ....   . ....+.+++.+||+.||++|||++++++.|+.+
T Consensus       224 ~~~~---~-~~~~~~~~i~~~l~~~p~~Rpt~~~l~~~L~~~  261 (261)
T cd05148         224 PCPA---K-CPQEIYKIMLECWAAEPEDRPSFKALREELDNI  261 (261)
T ss_pred             CCCC---C-CCHHHHHHHHHHcCCCchhCcCHHHHHHHHhcC
Confidence            0011   1 112233488899999999999999999999863

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=3.4e-30  Score=299.43  Aligned_cols=226  Identities=21%  Similarity=0.219  Sum_probs=166.0

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .|...+.||+|+||.||++....                 ....+.+|+.+++.++|||||++++++...     ...|+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~-----~~~~l  142 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSD-----DKLLL  142 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEEC-----CEEEE
Confidence            48888999999999999876431                 123567899999999999999999998543     35899


Q ss_pred             EEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ||||+++|+|.++++..            ..++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus       143 v~E~~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~~~~~~kL~DFgla~~~  219 (478)
T PTZ00267        143 IMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHRDLKSANIFLMPTGIIKLGDFGFSKQY  219 (478)
T ss_pred             EEECCCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCcCHHhEEECCCCcEEEEeCcCceec
Confidence            99999999999877531            12356899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ....    ........+||++|||||++.+..++.++||||+|++++++.....++....  ..+++.........   .
T Consensus       220 ~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~~--~~~~~~~~~~~~~~---~  290 (478)
T PTZ00267        220 SDSV----SLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGPS--QREIMQQVLYGKYD---P  290 (478)
T ss_pred             CCcc----ccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHhCCCC---C
Confidence            3211    1112234579999999999999999999999999988777655443332111  11111111111100   0


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    +..-+++++.+||+.||++||++++++.
T Consensus       291 ~~~~----~s~~~~~li~~~L~~dP~~Rps~~~~l~  322 (478)
T PTZ00267        291 FPCP----VSSGMKALLDPLLSKNPALRPTTQQLLH  322 (478)
T ss_pred             CCcc----CCHHHHHHHHHHhccChhhCcCHHHHHh
Confidence            0011    1122333777999999999999999864

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=1.8e-30  Score=281.37  Aligned_cols=231  Identities=25%  Similarity=0.352  Sum_probs=167.6

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|...+.||+|+||.||+|....                      ..+.|.+|++++++++||||+++++++...    
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~----   80 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEG----   80 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecC----
Confidence            457778999999999999986420                      235788999999999999999999998654    


Q ss_pred             cceEEEEEEecCCCCccccccccc----------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER----------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~----------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                       ...++||||+++|+|.++++...                      .+..+++.|++|||+.   +++||||||+||+++
T Consensus        81 -~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~dlkp~nili~  156 (280)
T cd05049          81 -DPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHRDLATRNCLVG  156 (280)
T ss_pred             -CCeEEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeeccccccceEEEc
Confidence             34899999999999999986321                      1256899999999998   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~  855 (929)
                      .++.+|++|||+++.......    ........+++.|+|||++.+..++.++||||+|++++++.. ...++....  .
T Consensus       157 ~~~~~kl~d~g~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~--~  230 (280)
T cd05049         157 YDLVVKIGDFGMSRDVYTTDY----YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS--N  230 (280)
T ss_pred             CCCeEEECCcccceecccCcc----eecCCCCcccceecChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC--H
Confidence            999999999999975422110    011122346788999999999999999999999988777543 222221111  1


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .+.++........   ...    ......+.+++.+||+.||++||++.||+++|++
T Consensus       231 ~~~~~~~~~~~~~---~~~----~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~l~~  280 (280)
T cd05049         231 EEVIECITQGRLL---QRP----RTCPSEVYDIMLGCWKRDPQQRINIKDIHERLQK  280 (280)
T ss_pred             HHHHHHHHcCCcC---CCC----CCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhhC
Confidence            1111110000000   000    1112223347789999999999999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.96  E-value=3.1e-30  Score=284.93  Aligned_cols=213  Identities=24%  Similarity=0.262  Sum_probs=155.4

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+++...                   ..+.+..|..++... +||||+++++++..     ....|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~-----~~~~~iv~   75 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQT-----PDRLFFVM   75 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEc-----CCEEEEEE
Confidence            469999999999987641                   123466788888876 69999999999854     33589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....   
T Consensus        76 Ey~~~g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~---  149 (320)
T cd05590          76 EFVNGGDLMFHIQKSRRFDEARARFYAAEITSALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFN---  149 (320)
T ss_pred             cCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcC---
Confidence            9999999998886433        2367899999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         ........||+.|||||++.+..++.++||||+|+++|++..+..++.....  .++.    .............  
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~--~~~~----~~i~~~~~~~~~~--  218 (320)
T cd05590         150 ---GKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENE--DDLF----EAILNDEVVYPTW--  218 (320)
T ss_pred             ---CCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHH----HHHhcCCCCCCCC--
Confidence               1122345799999999999999999999999999888776555444432221  1111    1111111110111  


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                        +..-+.+++.+|++.||++||++
T Consensus       219 --~~~~~~~li~~~L~~dP~~R~~~  241 (320)
T cd05590         219 --LSQDAVDILKAFMTKNPTMRLGS  241 (320)
T ss_pred             --CCHHHHHHHHHHcccCHHHCCCC
Confidence              12222347779999999999998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.96  E-value=4e-30  Score=284.32  Aligned_cols=218  Identities=25%  Similarity=0.271  Sum_probs=158.5

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||+||+|+...                   ..+.+..|.+++..+ +||||+++++++...     ...|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~-----~~~~lv~   75 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTK-----DRLFFVM   75 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcC-----CeEEEEE
Confidence            369999999999987641                   123466788888866 799999999998543     3489999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....   
T Consensus        76 E~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~---  149 (321)
T cd05591          76 EYVNGGDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRH---GVIYRDLKLDNILLDAEGHCKLADFGMCKEGILN---  149 (321)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeecccceecccC---
Confidence            9999999998876433        2367899999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         ........||+.|||||++.+..++.++||||+|++++++..+..++.....  .+..    ...............
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~Pf~~~~~--~~~~----~~i~~~~~~~p~~~~  220 (321)
T cd05591         150 ---GVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQPPFEADNE--DDLF----ESILHDDVLYPVWLS  220 (321)
T ss_pred             ---CccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCCCCCCCCH--HHHH----HHHHcCCCCCCCCCC
Confidence               1112345799999999999999999999999999988887665544432221  1111    111111111111111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCC-------CHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRI-------GIREALR  908 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RP-------s~~ev~~  908 (929)
                      .    -+.+++.+|++.||++||       ++.++++
T Consensus       221 ~----~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~  253 (321)
T cd05591         221 K----EAVSILKAFMTKNPNKRLGCVASQGGEDAIKQ  253 (321)
T ss_pred             H----HHHHHHHHHhccCHHHcCCCCCCCCCHHHHhc
Confidence            2    222377799999999999       7777763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.96  E-value=4.5e-30  Score=284.73  Aligned_cols=224  Identities=25%  Similarity=0.284  Sum_probs=159.3

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||+||+++...                   ..+.+.+|..++.++ +||||+++++++...     ...|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~-----~~~~lv~   75 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTE-----SRLFFVI   75 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcC-----CEEEEEE
Confidence            469999999999887641                   123467899999888 799999999998543     3589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....    
T Consensus        76 e~~~~g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~----  148 (329)
T cd05588          76 EFVSGGDLMFHMQRQRKLPEEHARFYSAEISLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIR----  148 (329)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEECcCcccccccc----
Confidence            9999999988875332        3367899999999998   999999999999999999999999999874211    


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhhccChHHHHhhcccchhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                        ........+||+.|||||++.+..++.++||||+|+++|++..+..++..... . ..+.....+........   ..
T Consensus       149 --~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~---~~  223 (329)
T cd05588         149 --PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVILEKQ---IR  223 (329)
T ss_pred             --CCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCCCcccccccccccccchHHHHHHHHcCC---CC
Confidence              11122345799999999999999999999999999888887655554432111 0 00000011111111110   01


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCC------HHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIG------IREAL  907 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs------~~ev~  907 (929)
                      .+..+..-+.+++.+|++.||++||+      ++|++
T Consensus       224 ~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~  260 (329)
T cd05588         224 IPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIK  260 (329)
T ss_pred             CCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHh
Confidence            11112222334777999999999997      56665

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.96  E-value=6.5e-30  Score=274.01  Aligned_cols=231  Identities=19%  Similarity=0.269  Sum_probs=169.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..++||+|+||.||+|....              ..+.+.+|+.++++++||||+++++++...     ...++||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~lv~   80 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVTKE-----EPIYIIT   80 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCCeeeEEEEEcCC-----CCcEEEE
Confidence            467888999999999999987531              245788999999999999999999988543     3379999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|+|.++++...          .++.+++.|++|||+.   +++||||||+||++++++.+||+|||+++......
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~  157 (261)
T cd05072          81 EYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERK---NYIHRDLRAANVLVSESLMCKIADFGLARVIEDNE  157 (261)
T ss_pred             ecCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEecCCCcEEECCCccceecCCCc
Confidence            9999999999886321          2356899999999997   99999999999999999999999999998653211


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                           ........++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+ ....+.....  .....
T Consensus       158 -----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~--~~-~~~~~~~~~~--~~~~~  227 (261)
T cd05072         158 -----YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGMSN--SD-VMSALQRGYR--MPRME  227 (261)
T ss_pred             -----eeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCCCH--HH-HHHHHHcCCC--CCCCC
Confidence                 011122346778999999998899999999999988777553 3322221111  00 0011111000  00000


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .    .+..+.+++.+|++.+|++||+++++.+.|+++
T Consensus       228 ~----~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  261 (261)
T cd05072         228 N----CPDELYDIMKTCWKEKAEERPTFDYLQSVLDDF  261 (261)
T ss_pred             C----CCHHHHHHHHHHccCCcccCcCHHHHHHHHhcC
Confidence            1    112233377799999999999999999999863

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.96  E-value=4.2e-30  Score=283.30  Aligned_cols=215  Identities=23%  Similarity=0.319  Sum_probs=154.4

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHc-cCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRN-VRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~-l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||+||+|+...                   ..+.+..|..++.. .+||||+++++++..     ....++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~-----~~~~~lv~   75 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQT-----KEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEEEE
Confidence            369999999999987642                   12234556666665 489999999998853     34589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        76 e~~~gg~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~---  149 (316)
T cd05592          76 EYLNGGDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKK---GIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNG---  149 (316)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeCCCCHHHeEECCCCCEEEccCcCCeECCCC---
Confidence            9999999998886432        2467899999999998   9999999999999999999999999999754211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|||||++.+..++.++||||+|++++++..+..++.....  .++... +..   ....    .+
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~Pf~~~~~--~~~~~~-i~~---~~~~----~~  216 (316)
T cd05592         150 ---EGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQSPFHGEDE--DELFDS-ILN---DRPH----FP  216 (316)
T ss_pred             ---CCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCCCCCCCCH--HHHHHH-HHc---CCCC----CC
Confidence               1122345799999999999999999999999999888776555444332211  111110 110   0000    01


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIRE  905 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~e  905 (929)
                      ..+..-+.+++.+||+.||++||++.+
T Consensus       217 ~~~~~~~~~ll~~~l~~~P~~R~~~~~  243 (316)
T cd05592         217 RWISKEAKDCLSKLFERDPTKRLGVDG  243 (316)
T ss_pred             CCCCHHHHHHHHHHccCCHHHcCCChH
Confidence            111222334777999999999998763

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=3.1e-30  Score=279.11  Aligned_cols=231  Identities=21%  Similarity=0.287  Sum_probs=168.2

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|...+.||+|+||.||+|....                      ....|.+|+.+++.++||||+++++++...    
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~----   81 (277)
T cd05032           6 EKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTG----   81 (277)
T ss_pred             HHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCC----
Confidence            467888999999999999876431                      124678999999999999999999998653    


Q ss_pred             cceEEEEEEecCCCCccccccccc------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT  780 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~  780 (929)
                       ...++||||+++|+|.+++....                  .++.|++.|++|||+.   +|+||||||+||++++++.
T Consensus        82 -~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~di~p~nill~~~~~  157 (277)
T cd05032          82 -QPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHRDLAARNCMVAEDLT  157 (277)
T ss_pred             -CCcEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccChheEEEcCCCC
Confidence             34799999999999999885321                  2356899999999987   9999999999999999999


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhcc
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVL  859 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~  859 (929)
                      +||+|||+++.+.....    ........++..|+|||.+.+..++.++||||+|++++++.. ...++.....  .+  
T Consensus       158 ~kl~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~--~~--  229 (277)
T cd05032         158 VKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLSN--EE--  229 (277)
T ss_pred             EEECCcccchhhccCcc----cccCCCCCccccccCHHHHhcCCCCcccchHHHHHHHHHhhccCCCCCccCCH--HH--
Confidence            99999999986532211    011122356789999999988889999999999998887653 3322221111  11  


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                         ...........  ..+......+.+++.+||+.+|++|||+.|+++.|++
T Consensus       230 ---~~~~~~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  277 (277)
T cd05032         230 ---VLKFVIDGGHL--DLPENCPDKLLELMRMCWQYNPKMRPTFLEIVSSLKD  277 (277)
T ss_pred             ---HHHHHhcCCCC--CCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHHHhcC
Confidence               11111100000  0001112223348889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.96  E-value=1.6e-30  Score=281.62  Aligned_cols=235  Identities=22%  Similarity=0.282  Sum_probs=170.2

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..++||+|+||.||+|++.                     ...+.+.+|+.+++.++||||+++++++...     
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----   81 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-----   81 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-----
Confidence            46788899999999999998642                     1134677899999999999999999998542     


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                       ..+++|||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        82 -~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~dlkp~Nil~~~~~~~kL~dfG~~~  157 (279)
T cd05109          82 -TVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEV---RLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (279)
T ss_pred             -CcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccccceEEEcCCCcEEECCCCcee
Confidence             2589999999999999986432         2367999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .+......    .......+++.|||||...+..++.++||||+|++++++.. ...++...+.       ..+......
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~-------~~~~~~~~~  226 (279)
T cd05109         158 LLDIDETE----YHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELMTFGAKPYDGIPA-------REIPDLLEK  226 (279)
T ss_pred             ecccccce----eecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCCCH-------HHHHHHHHC
Confidence            76321110    01112235678999999998899999999999988777533 2222221111       111111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ..... ....+...+. +++.+||+.||++||++.|+++.|+++.+..
T Consensus       227 ~~~~~-~~~~~~~~~~-~li~~~l~~dp~~Rp~~~~l~~~l~~~~~~~  272 (279)
T cd05109         227 GERLP-QPPICTIDVY-MIMVKCWMIDSECRPRFRELVDEFSRMARDP  272 (279)
T ss_pred             CCcCC-CCccCCHHHH-HHHHHHcCCChhhCcCHHHHHHHHHHhhcCC
Confidence            10000 0011122233 3788999999999999999999998876554

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.96  E-value=1.1e-30  Score=285.47  Aligned_cols=225  Identities=25%  Similarity=0.294  Sum_probs=172.7

Q ss_pred             CCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          664 SHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ...++||+|.||+|++|.|+                    ....+|.+|+.+|.+++|||+|++||+..+.      -..
T Consensus       113 ~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~q------p~m  186 (1039)
T KOG0199|consen  113 KLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQ------PAM  186 (1039)
T ss_pred             HHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccc------hhh
Confidence            34578999999999999887                    1356899999999999999999999998652      268


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ||||.++.|+|.+.|++..          .++.|||.||+||.++   +.||||+.++|+|+-..-.+||+|||+.|.+.
T Consensus       187 MV~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLesk---rlvHRDLAARNlllasprtVKI~DFGLmRaLg  263 (1039)
T KOG0199|consen  187 MVFELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESK---RLVHRDLAARNLLLASPRTVKICDFGLMRALG  263 (1039)
T ss_pred             HHhhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhh---hhhhhhhhhhhheecccceeeeecccceeccC
Confidence            9999999999999998632          2367999999999998   89999999999999998999999999999886


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                      ...+.-   .......-.+.|.|||.++.++++.++|||+||+.+|||.. ++.+|...+. .+-+.+|..-+  +    
T Consensus       264 ~ned~Y---vm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFtyGEePW~G~~g~qIL~~iD~~er--L----  334 (1039)
T KOG0199|consen  264 ENEDMY---VMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFTYGEEPWVGCRGIQILKNIDAGER--L----  334 (1039)
T ss_pred             CCCcce---EecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhccCCCCCCCCCHHHHHHhcccccc--C----
Confidence            542221   11122234678999999999999999999999999988633 2333333322 23333442111  1    


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                         .....|-..++. ++..||..+|++|||+.++.+.+
T Consensus       335 ---pRPk~csedIY~-imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  335 ---PRPKYCSEDIYQ-IMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             ---CCCCCChHHHHH-HHHHhccCCccccccHHHHHHhH
Confidence               111234455555 99999999999999999997543

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.96  E-value=3.6e-30  Score=285.12  Aligned_cols=222  Identities=25%  Similarity=0.284  Sum_probs=158.2

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHH---HccCCccccceeeecccCCCCCcc
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETL---RNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l---~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      |+..+.||+|+||.||++....                   ..+.+.+|++++   +.++||||+++++++...     .
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~-----~   75 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTE-----D   75 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcC-----C
Confidence            5667899999999999987541                   123455666554   567899999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ..|+||||+++|+|..+++...       .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        76 ~~~lv~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05589          76 HVCFVMEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHEN---KIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM  152 (324)
T ss_pred             EEEEEEcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecCCCHHHeEECCCCcEEeCcccCCccCC
Confidence            5899999999999988876422       3467899999999998   99999999999999999999999999987432


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      .......+||+.|||||++.+..++.++||||+|+++|++..+..++.....  .+..+. +.   ......
T Consensus       153 ~~------~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~G~~pf~~~~~--~~~~~~-i~---~~~~~~  220 (324)
T cd05589         153 GF------GDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLVGESPFPGDDE--EEVFDS-IV---NDEVRY  220 (324)
T ss_pred             CC------CCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHhCCCCCCCCCH--HHHHHH-HH---hCCCCC
Confidence            11      1112345799999999999999999999999999888776554444322211  111111 11   111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ...    +...+.+++.+|++.||++||+     +.++++
T Consensus       221 p~~----~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~  256 (324)
T cd05589         221 PRF----LSREAISIMRRLLRRNPERRLGSGEKDAEDVKK  256 (324)
T ss_pred             CCC----CCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhh
Confidence            111    1222233777999999999995     555543

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.96  E-value=7.5e-30  Score=284.71  Aligned_cols=237  Identities=21%  Similarity=0.336  Sum_probs=168.0

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||+||+|.+.                      ...+.+.+|+.++.++ +||||++++++|...+ 
T Consensus         6 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~-   84 (343)
T cd05103           6 RDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG-   84 (343)
T ss_pred             hhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC-
Confidence            357888999999999999998631                      0124577899999999 6899999999885432 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc------------------------------------------------------
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER------------------------------------------------------  742 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------------------------------------  742 (929)
                         ...++||||+++|+|.++++..+                                                      
T Consensus        85 ---~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (343)
T cd05103          85 ---GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDV  161 (343)
T ss_pred             ---CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccc
Confidence               24799999999999998875321                                                      


Q ss_pred             ---------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          743 ---------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       743 ---------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                                           .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.......    
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~----  234 (343)
T cd05103         162 EEEEAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSENNVVKICDFGLARDIYKDPD----  234 (343)
T ss_pred             hhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCccCeEEEcCCCcEEEEecccccccccCcc----
Confidence                                 1245899999999998   999999999999999999999999999986532111    


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL  881 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  881 (929)
                      ........+++.|+|||++.+..++.++||||+|++++++..    .+..|..... .+.............  ..+...
T Consensus       235 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~----~g~~p~~~~~-~~~~~~~~~~~~~~~--~~~~~~  307 (343)
T cd05103         235 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS----LGASPYPGVK-IDEEFCRRLKEGTRM--RAPDYT  307 (343)
T ss_pred             hhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHH----CCCCCCCCcc-ccHHHHHHHhccCCC--CCCCCC
Confidence            011112345678999999999899999999999987776432    1222211000 011111111111000  000111


Q ss_pred             -HHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          882 -ITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       882 -~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                       .++.+ ++.+||+.||++||++.|+++.|+.+.+
T Consensus       308 ~~~~~~-~~~~cl~~~p~~Rps~~eil~~l~~~~~  341 (343)
T cd05103         308 TPEMYQ-TMLDCWHGEPSQRPTFSELVEHLGNLLQ  341 (343)
T ss_pred             CHHHHH-HHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence             23334 8889999999999999999999998765

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.96  E-value=2.9e-30  Score=292.68  Aligned_cols=180  Identities=23%  Similarity=0.279  Sum_probs=142.9

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .|+..++||+|+||.||+|+...                   ..+.+.+|+.++++++|||||++++++.+.     ...
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~-----~~~   76 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDK-----DNL   76 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeC-----CEE
Confidence            57888999999999999987641                   123577899999999999999999998543     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+|||||++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+....
T Consensus        77 ~lv~E~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~---~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~  153 (382)
T cd05625          77 YFVMDYIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKM---GFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRW  153 (382)
T ss_pred             EEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEEeECCCCccccc
Confidence            99999999999999886432        2356899999999998   999999999999999999999999999864311


Q ss_pred             ccCC-----------------------------------------CCCccccceeccccccccccccCCCCCCCCCCCCC
Q 002376          795 RVDN-----------------------------------------QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT  833 (929)
Q Consensus       795 ~~~~-----------------------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s  833 (929)
                      ....                                         ..........+||+.|||||++.+..++.++||||
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwS  233 (382)
T cd05625         154 THDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWS  233 (382)
T ss_pred             cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEe
Confidence            0000                                         00000112357999999999999999999999999


Q ss_pred             CcCCCCCcchhHHhhh
Q 002376          834 SESFAGEFNIVKWVES  849 (929)
Q Consensus       834 ~g~~~~~~~~~~~~~~  849 (929)
                      +||++|++.++..++.
T Consensus       234 lGvil~elltG~~Pf~  249 (382)
T cd05625         234 VGVILYEMLVGQPPFL  249 (382)
T ss_pred             chHHHHHHHhCCCCCC
Confidence            9998888766554443

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.96  E-value=6e-30  Score=283.16  Aligned_cols=214  Identities=27%  Similarity=0.300  Sum_probs=154.7

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHH-HHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECE-TLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~-~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+|+...                   ..+.+.+|.. +++.++||||+++++++..     ....++||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~-----~~~~~lv~   75 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQT-----ADKLYFVL   75 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEe-----CCEEEEEE
Confidence            469999999999987651                   1123444544 4678999999999998854     33589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....   
T Consensus        76 e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~---  149 (323)
T cd05575          76 DYVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEH---  149 (323)
T ss_pred             cCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCCHHHeEECCCCcEEEeccCCCcccccC---
Confidence            9999999998876432        2467999999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         ........||+.|||||++.+..++.++||||+|++++++.....++....  ..+..+.....    .........
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~----~~~~~~~~~  220 (323)
T cd05575         150 ---SKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--TAEMYDNILNK----PLRLKPNIS  220 (323)
T ss_pred             ---CCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCCCCCCCC--HHHHHHHHHcC----CCCCCCCCC
Confidence               112234579999999999999999999999999999888765544432221  11111111111    111111112


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIR  904 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~  904 (929)
                      .    .+.+++.+|++.||++||+++
T Consensus       221 ~----~~~~li~~~l~~~p~~R~~~~  242 (323)
T cd05575         221 V----SARHLLEGLLQKDRTKRLGAK  242 (323)
T ss_pred             H----HHHHHHHHHhhcCHHhCCCCC
Confidence            2    233367799999999999985

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.96  E-value=1.8e-30  Score=285.35  Aligned_cols=238  Identities=20%  Similarity=0.314  Sum_probs=171.4

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|...+.||+|+||.||+++..                        ...+++.+|+.+++++ +||||++++++|...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            357888999999999999987531                        1123577899999999 799999999998543


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +     ..|+||||+++|+|.+++...+                        .++.|++.||+|||+.   +++||||||
T Consensus        97 ~-----~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp  168 (307)
T cd05098          97 G-----PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHRDLAA  168 (307)
T ss_pred             C-----ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---CcccccccH
Confidence            3     4899999999999999986432                        1256899999999987   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +||++++++.+||+|||.++.......    ........+++.|||||++.+..++.++||||+|++++++.. ...++.
T Consensus       169 ~Nill~~~~~~kL~dfg~a~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~  244 (307)
T cd05098         169 RNVLVTEDNVMKIADFGLARDIHHIDY----YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  244 (307)
T ss_pred             HheEEcCCCcEEECCCcccccccccch----hhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999876532110    011112234578999999999899999999999987777543 222221


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ..+  ..+     +........  ....+......+.+++.+||+.+|++||+|.||++.|+++.+...
T Consensus       245 ~~~--~~~-----~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~l~~~~~~~~  304 (307)
T cd05098         245 GVP--VEE-----LFKLLKEGH--RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILALTS  304 (307)
T ss_pred             cCC--HHH-----HHHHHHcCC--CCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHHHHHHHHHhh
Confidence            111  111     111111111  001111122233348889999999999999999999999887643

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.96  E-value=2e-30  Score=279.78  Aligned_cols=235  Identities=22%  Similarity=0.278  Sum_probs=170.6

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCC-c
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKN-M  719 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~-~  719 (929)
                      +.+++.|+..+.||+|+||.||+|....               ....+.+|+.+++++ +||||+++++++...+... .
T Consensus         2 ~~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           2 RDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             CChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            3467788889999999999999987641               245788999999998 7999999999987643322 3


Q ss_pred             ceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ...|+||||+++|+|.+++...+          .++.|++.|++|||+.   +|+|||+||+||++++++.+||+|||++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~dl~~~nili~~~~~~~l~Dfg~~  158 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVS  158 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHEEECCCCCEEEccCCCc
Confidence            46899999999999999887422          1356899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      +......      .......|++.|+|||++.     +..++.++||||+|++++++.....++.........     ..
T Consensus       159 ~~~~~~~------~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~~~~~~-----~~  227 (272)
T cd06637         159 AQLDRTV------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRAL-----FL  227 (272)
T ss_pred             eeccccc------ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccCHHHHH-----HH
Confidence            8653211      1123457899999999986     345889999999998888766555444322210000     00


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ............. .+..+.+++.+||+.+|++|||++|+++
T Consensus       228 --~~~~~~~~~~~~~-~~~~~~~li~~~l~~~p~~Rpt~~~il~  268 (272)
T cd06637         228 --IPRNPAPRLKSKK-WSKKFQSFIESCLVKNHSQRPTTEQLMK  268 (272)
T ss_pred             --HhcCCCCCCCCCC-cCHHHHHHHHHHcCCChhhCCCHHHHhh
Confidence              0000000000001 1122334778999999999999999875

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=3.1e-30  Score=275.68  Aligned_cols=229  Identities=24%  Similarity=0.314  Sum_probs=167.4

Q ss_pred             CCCCCceeecccCceeEEecccc------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ++|+..+.||+|+||.||++...            ...+.|.+|+.++++++|||++++++++...+    ...++||||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~----~~~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK----GGLYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCchHHHHHHHHHHHHhCCCCCeeeEEEEEEcCC----CceEEEEEC
Confidence            36778899999999999988654            23457889999999999999999999875432    347999999


Q ss_pred             cCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          729 LSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       729 ~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      +++|+|.++++...          .++.+++.||+|||+.   +|+||||||+||++++++.+|++|||+++.....   
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~---  155 (256)
T cd05082          82 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEAN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST---  155 (256)
T ss_pred             CCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccccchheEEEcCCCcEEecCCccceecccc---
Confidence            99999999886432          2356899999999998   9999999999999999999999999998754211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                            .....++..|+|||++.+..++.++||||+|++++++..    .+..|.....  ...+..........  ...
T Consensus       156 ------~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~----~g~~p~~~~~--~~~~~~~~~~~~~~--~~~  221 (256)
T cd05082         156 ------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYS----FGRVPYPRIP--LKDVVPRVEKGYKM--DAP  221 (256)
T ss_pred             ------CCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHh----CCCCCCCCCC--HHHHHHHHhcCCCC--CCC
Confidence                  112244678999999998899999999999987776532    1222211000  00111111111000  011


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      +.....+.+++.+|++.+|++|||+++++++|+++
T Consensus       222 ~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~~  256 (256)
T cd05082         222 DGCPPVVYDVMKQCWHLDAATRPSFLQLREQLEHI  256 (256)
T ss_pred             CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHhcC
Confidence            11222334478899999999999999999999864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.96  E-value=5.3e-30  Score=283.88  Aligned_cols=219  Identities=26%  Similarity=0.306  Sum_probs=156.5

Q ss_pred             eeecccCceeEEeccccCc-------------------HHHHHHHHH-HHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTGS-------------------WKSFIAECE-TLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~-~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||++++...                   .+.+.+|.. +++.++||||+++++++...     ...|+||
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~-----~~~~lv~   75 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTA-----DKLYFVL   75 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcC-----CeEEEEE
Confidence            3699999999999876511                   123334443 46778999999999988543     3489999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.....   
T Consensus        76 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~---  149 (325)
T cd05602          76 DYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKENIEH---  149 (325)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEEccCCCCcccccC---
Confidence            9999999998886432        2467999999999998   9999999999999999999999999999753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|||||++.+..++.++||||+|++++++.....++.....  .+..+.....    .........
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~i~~~----~~~~~~~~~  220 (325)
T cd05602         150 ---NGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT--AEMYDNILNK----PLQLKPNIT  220 (325)
T ss_pred             ---CCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCCCCCCCCH--HHHHHHHHhC----CcCCCCCCC
Confidence               1122345799999999999999999999999999988887655444332211  1111111111    111111122


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ..    +++++.+|++.||.+||++.+.+..
T Consensus       221 ~~----~~~li~~~l~~~p~~R~~~~~~~~~  247 (325)
T cd05602         221 NS----ARHLLEGLLQKDRTKRLGAKDDFME  247 (325)
T ss_pred             HH----HHHHHHHHcccCHHHCCCCCCCHHH
Confidence            22    3336669999999999998754433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.96  E-value=2.1e-30  Score=279.34  Aligned_cols=224  Identities=24%  Similarity=0.299  Sum_probs=160.8

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+|...+                   ..+.+.+|+++++++ +||||+++++++...     ...++||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-----~~~~lv~   75 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----GYLYLAI   75 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecC-----CCceEEE
Confidence            368999999999986431                   124677899999999 899999999998543     3479999


Q ss_pred             EecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          727 EFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      ||+++|+|.++++..+                        .++.|++.|++|||+.   +++||||||+||++++++.+|
T Consensus        76 e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nili~~~~~~k  152 (270)
T cd05047          76 EYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYVAK  152 (270)
T ss_pred             EeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccccceEEEcCCCeEE
Confidence            9999999999886422                        2356899999999997   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccCh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDP  861 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  861 (929)
                      ++|||+++.....       ........+..|+|||++.+..++.++||||+|++++++.. ...++.....       .
T Consensus       153 l~dfgl~~~~~~~-------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~-------~  218 (270)
T cd05047         153 IADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC-------A  218 (270)
T ss_pred             ECCCCCccccchh-------hhccCCCCccccCChHHHccCCCCchhhHHHHHHHHHHHHcCCCCCccccCH-------H
Confidence            9999998632110       00111234667999999988899999999999988777542 2222211111       1


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ...........  .+........+.+++.+||+.+|.+||++.|++++|+++.
T Consensus       219 ~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~l~~~~  269 (270)
T cd05047         219 ELYEKLPQGYR--LEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRML  269 (270)
T ss_pred             HHHHHHhCCCC--CCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHHHHHHhh
Confidence            11111111000  0000011122334888999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.96  E-value=1.2e-29  Score=272.26  Aligned_cols=230  Identities=21%  Similarity=0.311  Sum_probs=168.1

Q ss_pred             CCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +|+..+.||+|+||.||+|....               ..+++.+|++++++++||||+++++++...+     ..++||
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~   81 (263)
T cd05052           7 DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-----PFYIIT   81 (263)
T ss_pred             HeEEeeecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCChhheEEEEcCCC-----CcEEEE
Confidence            46777899999999999987541               2457889999999999999999999986433     379999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|+|.+++....          .++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++......
T Consensus        82 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~  158 (263)
T cd05052          82 EFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT  158 (263)
T ss_pred             EeCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCcEEeCCCccccccccce
Confidence            9999999999886322          2357899999999998   99999999999999999999999999998653211


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .     .......++..|+|||++.+..++.++||||+|++++++.. ...++...  ...+..+ .+.....      .
T Consensus       159 ~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~~~--~~~~~~~-~~~~~~~------~  224 (263)
T cd05052         159 Y-----TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI--DLSQVYE-LLEKGYR------M  224 (263)
T ss_pred             e-----eccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCCCC--CHHHHHH-HHHCCCC------C
Confidence            1     11111234678999999999999999999999988777543 22222111  1111110 1111000      0


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ..++..+..+.+++.+||+.||++||+|.|++++|+++
T Consensus       225 ~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~~l~~~  262 (263)
T cd05052         225 ERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQAFETM  262 (263)
T ss_pred             CCCCCCCHHHHHHHHHHccCCcccCCCHHHHHHHHHhh
Confidence            11111222333477899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.96  E-value=1e-30  Score=300.29  Aligned_cols=179  Identities=26%  Similarity=0.345  Sum_probs=137.8

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCC---CCcceEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS---KNMEFLA  723 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~---~~~~~~~  723 (929)
                      ..++|+..+.||+|+||.||+|....            ......+|+.+++.++|||||++++++.....   ....+++
T Consensus        64 ~~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l~  143 (440)
T PTZ00036         64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDPQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNIFLN  143 (440)
T ss_pred             cCCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCceEEE
Confidence            34679999999999999999987642            12345679999999999999999988754321   1223578


Q ss_pred             EEEEecCCCCccccccc------------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecccccc
Q 002376          724 LVYEFLSNGSLGDWIHG------------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLAR  790 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~  790 (929)
                      +||||+++ ++.+++..            .+.++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+|+
T Consensus       144 lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHrDLKp~NILl~~~~~~vkL~DFGla~  219 (440)
T PTZ00036        144 VVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSK---FICHRDLKPQNLLIDPNTHTLKLCDFGSAK  219 (440)
T ss_pred             EEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCcCHHHEEEcCCCCceeeeccccch
Confidence            99999974 67666531            122356999999999998   999999999999999665 79999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .+...       .......||+.|||||++.+. .++.++||||+|++++++.++..++
T Consensus       220 ~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf  271 (440)
T PTZ00036        220 NLLAG-------QRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIF  271 (440)
T ss_pred             hccCC-------CCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            65321       112234789999999998764 6899999999999888876554433

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.96  E-value=4.7e-30  Score=298.16  Aligned_cols=239  Identities=22%  Similarity=0.271  Sum_probs=173.4

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      .+.+...++|...+.||+|+||+||+++...                  ....+.+|+..+..++|+|++++++.+...+
T Consensus        25 ~~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~  104 (496)
T PTZ00283         25 ATAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKD  104 (496)
T ss_pred             ccccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceeccc
Confidence            3445566899999999999999999987531                  1346778999999999999999988775433


Q ss_pred             CC---CcceEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc
Q 002376          716 SK---NMEFLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT  780 (929)
Q Consensus       716 ~~---~~~~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~  780 (929)
                      ..   ....+++||||+++|+|.++++...            .++.|++.||+|+|+.   +|+||||||+|||+++++.
T Consensus       105 ~~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHrDLKP~NILl~~~~~  181 (496)
T PTZ00283        105 PRNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHRDIKSANILLCSNGL  181 (496)
T ss_pred             ccCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEeCCCC
Confidence            21   1224689999999999999886321            2357899999999998   9999999999999999999


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccC
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLD  860 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~  860 (929)
                      +||+|||+++.+.....    .......+||+.|||||++.+..++.++||||+|+++|++.....++...  ...++++
T Consensus       182 vkL~DFGls~~~~~~~~----~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~--~~~~~~~  255 (496)
T PTZ00283        182 VKLGDFGFSKMYAATVS----DDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGE--NMEEVMH  255 (496)
T ss_pred             EEEEecccCeecccccc----ccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC--CHHHHHH
Confidence            99999999986532211    11123457999999999999999999999999998877765444333211  1122222


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .........   ..    .....-+.+++.+||+.||++||++.++++
T Consensus       256 ~~~~~~~~~---~~----~~~~~~l~~li~~~L~~dP~~RPs~~ell~  296 (496)
T PTZ00283        256 KTLAGRYDP---LP----PSISPEMQEIVTALLSSDPKRRPSSSKLLN  296 (496)
T ss_pred             HHhcCCCCC---CC----CCCCHHHHHHHHHHcccChhhCcCHHHHHh
Confidence            211111100   01    111222334777999999999999999875

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.96  E-value=7.5e-30  Score=282.65  Aligned_cols=219  Identities=29%  Similarity=0.290  Sum_probs=156.6

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHH-HHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECE-TLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~-~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+++...                   ..+.+.+|.. +++.++||||+++++++...     ...|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~-----~~~~lv~   75 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTT-----EKLYFVL   75 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecC-----CEEEEEE
Confidence            469999999999987541                   1233445554 46779999999999988543     3589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....   
T Consensus        76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~---  149 (325)
T cd05604          76 DFVNGGELFFHLQRERSFPEPRARFYAAEIASALGYLHSI---NIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQ---  149 (325)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEEeecCCcccCCCC---
Confidence            9999999988876432        3467899999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|||||++.+..++.++||||+|++++++..+..++....  ..+..+.....    .....+...
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~--~~~~~~~~~~~----~~~~~~~~~  220 (325)
T cd05604         150 ---SDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLPPFYCRD--VAEMYDNILHK----PLVLRPGAS  220 (325)
T ss_pred             ---CCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCCCCCCCC--HHHHHHHHHcC----CccCCCCCC
Confidence               112234579999999999999999999999999999998765544432211  11111111111    111111111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...    .+++.+|++.+|++||++++.++.
T Consensus       221 ~~~----~~ll~~ll~~~p~~R~~~~~~~~~  247 (325)
T cd05604         221 LTA----WSILEELLEKDRQRRLGAKEDFLE  247 (325)
T ss_pred             HHH----HHHHHHHhccCHHhcCCCCCCHHH
Confidence            222    236679999999999988654433

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.96  E-value=4.5e-30  Score=288.62  Aligned_cols=178  Identities=26%  Similarity=0.296  Sum_probs=141.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||.||++....                  ..+.+.+|+.+++.++||||+++++++..... ....
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            4689999999999999999986541                  23467789999999999999999999864332 1223


Q ss_pred             eEEEEEEecCCCCccccccc------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHG------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ..|+||||+++ ++.+.++.      ...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~  175 (359)
T cd07876         100 DVYLVMELMDA-NLCQVIHMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTACT  175 (359)
T ss_pred             eeEEEEeCCCc-CHHHHHhccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEecCCCcccccc
Confidence            47999999965 56555432      123467999999999998   999999999999999999999999999975421


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .       .......||+.|+|||++.+..++.++||||+|+++|++.....++
T Consensus       176 ~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf  222 (359)
T cd07876         176 N-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIF  222 (359)
T ss_pred             C-------ccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCC
Confidence            1       1123347899999999999999999999999999888876555444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=2.3e-30  Score=275.92  Aligned_cols=225  Identities=22%  Similarity=0.295  Sum_probs=160.3

Q ss_pred             eeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          667 NLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      +.||+|+||.||+|....                 ....|.+|++++++++||||++++++|....     ..++||||+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~e~~   75 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-----PIYIVMELV   75 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCC-----CeEEEEeec
Confidence            368999999999986531                 1346889999999999999999999986533     479999999


Q ss_pred             CCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCC
Q 002376          730 SNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       730 ~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~  800 (929)
                      ++++|.++++...         ....|++.||+|||+.   +|+||||||+||++++++.+|++|||+++.......   
T Consensus        76 ~~~~L~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~---  149 (252)
T cd05084          76 QGGDFLTFLRTEGPRLKVKELIQMVENAAAGMEYLESK---HCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVY---  149 (252)
T ss_pred             cCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchheEEEcCCCcEEECccccCcccccccc---
Confidence            9999999986322         2356899999999998   899999999999999999999999999875432110   


Q ss_pred             CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                       ........++..|+|||++.++.++.++||||+|++++++.. ...++.....       ............  ...++
T Consensus       150 -~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~p~~~~~~-------~~~~~~~~~~~~--~~~~~  219 (252)
T cd05084         150 -ASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAVPYANLSN-------QQTREAIEQGVR--LPCPE  219 (252)
T ss_pred             -cccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccCH-------HHHHHHHHcCCC--CCCcc
Confidence             000011123567999999999999999999999988777543 2222211111       011111100000  00111


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ..+..+.+++.+|++.+|++||++.|+.++|++
T Consensus       220 ~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  252 (252)
T cd05084         220 LCPDAVYRLMERCWEYDPGQRPSFSTVHQELQS  252 (252)
T ss_pred             cCCHHHHHHHHHHcCCChhhCcCHHHHHHHHhC
Confidence            112223348889999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.96  E-value=9.2e-30  Score=274.59  Aligned_cols=234  Identities=20%  Similarity=0.277  Sum_probs=166.0

Q ss_pred             CCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcceE
Q 002376          664 SHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFL  722 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~  722 (929)
                      ...+.||+|+||.||+|+...                    ..+.|.+|+++++.++||||++++++|..... ......
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            456889999999999986431                    13468889999999999999999998865332 122347


Q ss_pred             EEEEEecCCCCcccccccc--------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ++||||+++|+|.+++...              ..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~  158 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHRDLAARNCMLNENMNVCVADFGL  158 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhheEEcCCCCEEECCCCc
Confidence            8999999999998876311              12356899999999997   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      ++.+.....    ........+++.|+|||+..+..++.++||||+|++++++.. ...++....       +..+....
T Consensus       159 ~~~~~~~~~----~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~-------~~~~~~~~  227 (272)
T cd05075         159 SKKIYNGDY----YRQGRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE-------NSEIYDYL  227 (272)
T ss_pred             ccccCcccc----eecCCcccCCcccCCHHHccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHH
Confidence            986532111    011122346778999999999999999999999988777543 222221111       11111111


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ......  .........+++++.+||+.||++|||+.|+++.|+++
T Consensus       228 ~~~~~~--~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~~~  271 (272)
T cd05075         228 RQGNRL--KQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCELEKA  271 (272)
T ss_pred             HcCCCC--CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            111100  00011122234488899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=2e-30  Score=280.56  Aligned_cols=233  Identities=21%  Similarity=0.267  Sum_probs=166.5

Q ss_pred             hhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      ++++|+..+.||+|+||.||+|....                      ....|.+|+.++++++||||+++++++.+.+ 
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-   82 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERL-   82 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-
Confidence            34678889999999999999886642                      1246889999999999999999999886543 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC--
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--  779 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~--  779 (929)
                          ..++||||+++|+|.++++..+               .++.||+.|++|||+.   +++||||||+||++++++  
T Consensus        83 ----~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~nil~~~~~~~  155 (277)
T cd05036          83 ----PRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHRDIAARNCLLTCKGPG  155 (277)
T ss_pred             ----CcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchheEEEeccCCC
Confidence                3699999999999999886432               2356899999999998   899999999999998755  


Q ss_pred             -ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          780 -TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       780 -~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                       .+|++|||+++.+.....    ........++..|||||++.+..++.++||||+|++++++.. ...++....  ..+
T Consensus       156 ~~~kl~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~--~~~  229 (277)
T cd05036         156 RVAKIADFGMARDIYRASY----YRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRT--NQE  229 (277)
T ss_pred             cceEeccCccccccCCccc----eecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC--HHH
Confidence             699999999986532110    000111234568999999999999999999999988777542 322222111  111


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ..+. +...  .......   .+...+. +++.+|++.+|++||++.||++.|++
T Consensus       230 ~~~~-~~~~--~~~~~~~---~~~~~~~-~~i~~cl~~~p~~Rps~~~vl~~l~~  277 (277)
T cd05036         230 VMEF-VTGG--GRLDPPK---GCPGPVY-RIMTDCWQHTPEDRPNFATILERIQY  277 (277)
T ss_pred             HHHH-HHcC--CcCCCCC---CCCHHHH-HHHHHHcCCCcccCcCHHHHHHHhhC
Confidence            1111 1000  0000011   1112233 37889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.96  E-value=2.4e-30  Score=278.58  Aligned_cols=233  Identities=21%  Similarity=0.312  Sum_probs=168.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|+...                    ..+.+.+|++++++++|||++++.+++...+     
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   79 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFK-----   79 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCC-----
Confidence            467788999999999999886531                    1346889999999999999999999985433     


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.++++...         .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++.
T Consensus        80 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~  156 (268)
T cd05063          80 PAMIITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDM---NYVHRDLAARNILVNSNLECKVSDFGLSRV  156 (268)
T ss_pred             CcEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccccchhhEEEcCCCcEEECCCcccee
Confidence            4799999999999999886421         2357899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ........   ........+..|+|||++.+..++.++||||+|++++++.+ ...++.....       ..........
T Consensus       157 ~~~~~~~~---~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~~~-------~~~~~~i~~~  226 (268)
T cd05063         157 LEDDPEGT---YTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDMSN-------HEVMKAINDG  226 (268)
T ss_pred             cccccccc---eeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcCCH-------HHHHHHHhcC
Confidence            53221110   11111233567999999998889999999999988777543 2322211111       1111111100


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      . ..+...++...+. +++.+||+.+|++||+|.+|++.|+++
T Consensus       227 ~-~~~~~~~~~~~~~-~li~~c~~~~p~~Rp~~~~i~~~l~~~  267 (268)
T cd05063         227 F-RLPAPMDCPSAVY-QLMLQCWQQDRARRPRFVDIVNLLDKL  267 (268)
T ss_pred             C-CCCCCCCCCHHHH-HHHHHHcCCCcccCcCHHHHHHHHHhh
Confidence            0 0000111222333 488899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.96  E-value=2.3e-30  Score=280.48  Aligned_cols=220  Identities=25%  Similarity=0.293  Sum_probs=157.2

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||+||++....                   ..+.+..|++++++++||||+++.+++...     ...++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~-----~~~~lv~e~~   75 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTK-----TDLCLVMTIM   75 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCC-----CeEEEEEeCC
Confidence            6999999999886541                   123567899999999999999999988543     3489999999


Q ss_pred             CCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          730 SNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       730 ~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ++|+|.+++...            ..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.+.... 
T Consensus        76 ~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~-  151 (280)
T cd05608          76 NGGDLRYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQR---RIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ-  151 (280)
T ss_pred             CCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEeeCccceecCCCC-
Confidence            999998776321            12357899999999998   99999999999999999999999999997653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......||+.|+|||++.+..++.++||||+|+++|++.....++.......   .............   ...
T Consensus       152 -----~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~---~~~  220 (280)
T cd05608         152 -----SKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKV---ENKELKQRILNDS---VTY  220 (280)
T ss_pred             -----ccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCcch---hHHHHHHhhcccC---CCC
Confidence                 11233578999999999999999999999999988777655444433221100   0011111110000   001


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      +..++..+++++.+|++.||++||     +++|+++
T Consensus       221 ~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~  256 (280)
T cd05608         221 PDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRT  256 (280)
T ss_pred             cccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhc
Confidence            111222333477799999999999     6677764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-30  Score=270.97  Aligned_cols=222  Identities=25%  Similarity=0.272  Sum_probs=171.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .+.|+..++||+|+||+||.++...                   ......+|..++.+++.|.||.+...|.+.+     
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd-----  258 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKD-----  258 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC-----
Confidence            3467888999999999999776542                   2234557999999999999999988885544     


Q ss_pred             eEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      .+++|+..|.||+|.-+|...          +.++.+|+.||++||+.   +||.||+||+|||+|++|+++|+|.|+|.
T Consensus       259 ~LClVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~---~iVYRDLKPeNILLDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  259 ALCLVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRR---RIVYRDLKPENILLDDHGHVRISDLGLAV  335 (591)
T ss_pred             ceEEEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhc---ceeeccCChhheeeccCCCeEeeccceEE
Confidence            499999999999999988733          24578999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh-ccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ-VLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~  869 (929)
                      .+.+..       .....+||.||||||++.++.|+...|=|++||.+|+|.-++-++....+.+.. -+|.++...   
T Consensus       336 ei~~g~-------~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk~eEvdrr~~~~---  405 (591)
T KOG0986|consen  336 EIPEGK-------PIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVKREEVDRRTLED---  405 (591)
T ss_pred             ecCCCC-------ccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhhHHHHHHHHhcc---
Confidence            775431       123348999999999999999999999999999888876666666665553322 344444321   


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .    ...++..++-.+++...-++.||++|--.
T Consensus       406 ~----~ey~~kFS~eakslc~~LL~Kdp~~RLGc  435 (591)
T KOG0986|consen  406 P----EEYSDKFSEEAKSLCEGLLTKDPEKRLGC  435 (591)
T ss_pred             h----hhcccccCHHHHHHHHHHHccCHHHhccC
Confidence            1    11223344445556668999999999643

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.96  E-value=6.1e-30  Score=282.63  Aligned_cols=172  Identities=25%  Similarity=0.342  Sum_probs=133.5

Q ss_pred             ceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      .++||+|+||+||+|+...                ....+.+|++++++++||||+++++++...   .....++||||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~---~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSH---ADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCCCcHHHHHHHHHHHhcCCCCCcceeeeEecC---CCcEEEEEEecc
Confidence            4689999999999987431                134678999999999999999999988643   234589999999


Q ss_pred             CCCCcccccccc-----------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee----cCCCceEEecccc
Q 002376          730 SNGSLGDWIHGE-----------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDFGL  788 (929)
Q Consensus       730 ~~gsL~~~l~~~-----------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl----~~~~~~ki~DfGl  788 (929)
                      + ++|.+++...                 +.++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07868          83 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEecCCCCcCcEEEeecCc
Confidence            5 5777765411                 23467999999999998   99999999999999    4667999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      |+.......   .........||+.|||||++.+. .++.++||||+|++++++....-+
T Consensus       159 a~~~~~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~  215 (317)
T cd07868         159 ARLFNSPLK---PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPI  215 (317)
T ss_pred             eeccCCCCc---cccccCCccccccccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCC
Confidence            986532211   11122345789999999998774 589999999999988876555433

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.96  E-value=7.1e-30  Score=282.59  Aligned_cols=218  Identities=23%  Similarity=0.281  Sum_probs=158.6

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +|+..+.||+|+||+||+|+...                   ..+.+..|..++..+ +||+|+++++++.+.     ..
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-----~~   75 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTM-----DR   75 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecC-----CE
Confidence            47788999999999999987652                   123456788888777 589999999988543     35


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~  152 (323)
T cd05616          76 LYFVMEYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKENM  152 (323)
T ss_pred             EEEEEcCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEecCCCHHHeEECCCCcEEEccCCCceecC
Confidence            899999999999998875432        3467899999999998   99999999999999999999999999987532


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      .......+||+.|||||++.+..++.++||||+|++++++.++..++.....  .+.... +.   ......
T Consensus       153 ~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~~~--~~~~~~-i~---~~~~~~  220 (323)
T cd05616         153 WD------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELFQS-IM---EHNVAY  220 (323)
T ss_pred             CC------CCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCCCH--HHHHHH-HH---hCCCCC
Confidence            11      1122345799999999999999999999999999888886655444432221  111111 11   111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      ...    +..-+.+++.+|++.||++|+++
T Consensus       221 p~~----~s~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05616         221 PKS----MSKEAVAICKGLMTKHPGKRLGC  246 (323)
T ss_pred             CCc----CCHHHHHHHHHHcccCHHhcCCC
Confidence            111    11222337779999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.96  E-value=6.5e-30  Score=283.05  Aligned_cols=218  Identities=25%  Similarity=0.292  Sum_probs=158.7

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCc-cccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHR-NLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hp-niv~l~~~~~~~~~~~~~~  721 (929)
                      +|+..+.||+|+||.||+|+...                   ..+.+..|+++++.++|+ +|+++++++..     ...
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~   75 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----MDR   75 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEc-----CCE
Confidence            47788999999999999987652                   134567899999999765 57788888743     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus        76 ~~lv~E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~  152 (324)
T cd05587          76 LYFVMEYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDAEGHIKIADFGMCKENI  152 (324)
T ss_pred             EEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEEcCCCCEEEeecCcceecC
Confidence            899999999999998886432        2367899999999998   99999999999999999999999999987431


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .      ........+||+.|+|||++.+..++.++||||+|++++++.++..++.....  .+.    ...........
T Consensus       153 ~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~----~~~i~~~~~~~  220 (324)
T cd05587         153 F------GGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGEDE--DEL----FQSIMEHNVSY  220 (324)
T ss_pred             C------CCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHH----HHHHHcCCCCC
Confidence            1      11122345799999999999999999999999999888887655444432221  010    11111111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .    ..+..-+.+++.+|++.||++||+.
T Consensus       221 ~----~~~~~~~~~li~~~l~~~P~~R~~~  246 (324)
T cd05587         221 P----KSLSKEAVSICKGLLTKHPAKRLGC  246 (324)
T ss_pred             C----CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence            1    1112222337779999999999986

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.96  E-value=1.1e-29  Score=285.59  Aligned_cols=181  Identities=24%  Similarity=0.268  Sum_probs=145.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+++...                   ..+.+.+|+.++..++||+|+++++++.+     ...
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~-----~~~   75 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQD-----KRN   75 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CCE
Confidence            468889999999999999987641                   12456789999999999999999998854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+.
T Consensus        76 ~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~---givHrDLkp~NIli~~~~~vkL~DfG~~~~~~  152 (360)
T cd05627          76 LYLIMEFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQL---GFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLK  152 (360)
T ss_pred             EEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEccCCCHHHEEECCCCCEEEeeccCCcccc
Confidence            899999999999999986433        2367899999999998   99999999999999999999999999987553


Q ss_pred             cccCCC-----------------------------CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 002376          794 ERVDNQ-----------------------------SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       794 ~~~~~~-----------------------------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ......                             .........+||+.|||||++.+..++.++||||+|+++|++.++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG  232 (360)
T cd05627         153 KAHRTEFYRNLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIG  232 (360)
T ss_pred             cccccccccccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccC
Confidence            211000                             000011235799999999999999999999999999999998776


Q ss_pred             HHhhh
Q 002376          845 KWVES  849 (929)
Q Consensus       845 ~~~~~  849 (929)
                      ..++.
T Consensus       233 ~~Pf~  237 (360)
T cd05627         233 YPPFC  237 (360)
T ss_pred             CCCCC
Confidence            65553

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=2e-30  Score=277.09  Aligned_cols=227  Identities=26%  Similarity=0.377  Sum_probs=164.7

Q ss_pred             CCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      +|+..+.||+|+||.||++++..              ....|.+|++++++++||||+++++++...     ...++|||
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~lv~e   79 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQ-----RPIFIVTE   79 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCC-----CceEEEEe
Confidence            46677899999999999886541              235788999999999999999999998543     34799999


Q ss_pred             ecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          728 FLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      |+++++|.++++...         .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++......  
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~--  154 (256)
T cd05059          80 YMANGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESN---GFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQ--  154 (256)
T ss_pred             cCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CcccccccHhhEEECCCCcEEECCcccceeccccc--
Confidence            999999999886322         2367899999999998   89999999999999999999999999998653210  


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                         ........++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+.. ..+.....      ...
T Consensus       155 ---~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~-~~~~~~~~------~~~  222 (256)
T cd05059         155 ---YTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYERFSN--SEVV-ESVSAGYR------LYR  222 (256)
T ss_pred             ---ccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCCCCCH--HHHH-HHHHcCCc------CCC
Confidence               011111234568999999999999999999999988777543 2333322211  1100 11111000      000


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      +...+..+.+++.+||+.+|++||||.|+++.|
T Consensus       223 ~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~l  255 (256)
T cd05059         223 PKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQL  255 (256)
T ss_pred             CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHh
Confidence            011122233488899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.96  E-value=4.4e-30  Score=276.51  Aligned_cols=227  Identities=23%  Similarity=0.277  Sum_probs=155.2

Q ss_pred             eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          668 LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .||+|+||+||+|+..                   ...+.|.+|+.+++.++||||++++++|....     ..++||||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~-----~~~lv~e~   76 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAI-----PYLLVFEY   76 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCC-----ccEEEEec
Confidence            5899999999987532                   12357889999999999999999999986533     37999999


Q ss_pred             cCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          729 LSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      +++|+|.+++++..            .++.||+.||+|||+.   +++||||||+|||++.++.+||+|||+++..... 
T Consensus        77 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~-  152 (268)
T cd05086          77 CELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKH---NFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKE-  152 (268)
T ss_pred             CCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHC---CeeccCCccceEEEcCCccEEecccccccccCcc-
Confidence            99999999886421            2356899999999997   8999999999999999999999999998642111 


Q ss_pred             CCCCCccccceeccccccccccccCC-------CCCCCCCCCCCCcCCCCCcchh-HHhhhcCCchhhhccChHHHHhhc
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLG-------ERPSTAGDVPTSESFAGEFNIV-KWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DV~s~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                         ..........|+..|+|||++..       ..++.++||||+|++++++... ..++....+  .+.+...+.+...
T Consensus       153 ---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~--~~~~~~~~~~~~~  227 (268)
T cd05086         153 ---DYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELFENAAQPYSHLSD--REVLNHVIKDQQV  227 (268)
T ss_pred             ---hhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHHHHhhccc
Confidence               00111123467899999998753       2357899999999887775321 111111111  1111111111000


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      .  ..++.........+.+++..|| .+|++||+|+||++.|.
T Consensus       228 ~--~~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~~l~  267 (268)
T cd05086         228 K--LFKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHRLLT  267 (268)
T ss_pred             c--cCCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHHHhc
Confidence            0  0001111111222333666999 67999999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.96  E-value=5.5e-30  Score=282.45  Aligned_cols=237  Identities=20%  Similarity=0.327  Sum_probs=169.2

Q ss_pred             CCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLD  715 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~  715 (929)
                      ++|...+.||+|+||.||+++..                        .....+.+|+++++++ +||||++++++|... 
T Consensus        12 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-   90 (314)
T cd05099          12 DRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQE-   90 (314)
T ss_pred             HHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccC-
Confidence            46778899999999999987531                        1134678899999999 699999999998543 


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCC
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPG  771 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~  771 (929)
                          ...++||||+++|+|.+++...+                        .++.|++.||+|||+.   +++||||||+
T Consensus        91 ----~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~dlkp~  163 (314)
T cd05099          91 ----GPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHRDLAAR  163 (314)
T ss_pred             ----CceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---Ceeeccccce
Confidence                34799999999999999986422                        1246899999999998   9999999999


Q ss_pred             CeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhc
Q 002376          772 NILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESN  850 (929)
Q Consensus       772 NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~  850 (929)
                      ||++++++.+|++|||+++........    .......++..|||||++.+..++.++||||+|++++++.. ...++..
T Consensus       164 Nill~~~~~~kL~Dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~  239 (314)
T cd05099         164 NVLVTEDNVMKIADFGLARGVHDIDYY----KKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPG  239 (314)
T ss_pred             eEEEcCCCcEEEccccccccccccccc----cccccCCCCccccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999865321110    01111234567999999999899999999999988777543 1111111


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .+  ..+     +............ ...+..++. +++.+||+.+|++||++.|+++.|+++.....
T Consensus       240 ~~--~~~-----~~~~~~~~~~~~~-~~~~~~~l~-~li~~cl~~~p~~Rps~~~ll~~l~~~~~~~~  298 (314)
T cd05099         240 IP--VEE-----LFKLLREGHRMDK-PSNCTHELY-MLMRECWHAVPTQRPTFKQLVEALDKVLAAVS  298 (314)
T ss_pred             CC--HHH-----HHHHHHcCCCCCC-CCCCCHHHH-HHHHHHcCCCcccCcCHHHHHHHHHHHHHHhc
Confidence            11  111     1111111100000 011112233 37889999999999999999999999876543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=4.1e-30  Score=274.86  Aligned_cols=224  Identities=21%  Similarity=0.257  Sum_probs=162.1

Q ss_pred             eecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          668 LIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .||+|+||.||+|.+.                    ...+++.+|+.+++.++||||+++++++..      ...++|||
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------~~~~lv~e   75 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEA------ESWMLVME   75 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcC------CCcEEEEe
Confidence            5899999999998532                    113568899999999999999999998742      23689999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |+++|+|.+++...+        .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++.+...... 
T Consensus        76 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~-  151 (257)
T cd05116          76 LAELGPLNKFLQKNKHVTEKNITELVHQVSMGMKYLEET---NFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENY-  151 (257)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccchhhEEEcCCCeEEECCCccccccCCCCCe-
Confidence            999999999886432        2367899999999998   9999999999999999999999999999865322110 


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                        ........++..|+|||.+....++.++||||+|++++++.. ...++.....  .     .+.........  .+.+
T Consensus       152 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~-----~~~~~i~~~~~--~~~~  220 (257)
T cd05116         152 --YKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKG--N-----EVTQMIESGER--MECP  220 (257)
T ss_pred             --eeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCCH--H-----HHHHHHHCCCC--CCCC
Confidence              011122245678999999988889999999999988877653 3333322211  1     11111111110  0111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ...+.-+++++.+||+.||++||++++|+++|++
T Consensus       221 ~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~~l~~  254 (257)
T cd05116         221 QRCPPEMYDLMKLCWTYGVDERPGFAVVELRLRN  254 (257)
T ss_pred             CCCCHHHHHHHHHHhccCchhCcCHHHHHHHHhc
Confidence            1122233347889999999999999999999976

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=1.9e-30  Score=281.67  Aligned_cols=230  Identities=18%  Similarity=0.239  Sum_probs=165.0

Q ss_pred             CCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +|+..+.||+|+||+||+|....                      ..+.|.+|+.+++.++||||+++++++.+.+    
T Consensus         6 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~----   81 (283)
T cd05091           6 TVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQ----   81 (283)
T ss_pred             HHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCC----
Confidence            35566889999999999986421                      1246888999999999999999999986543    


Q ss_pred             ceEEEEEEecCCCCcccccccc------------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE------------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~------------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl  775 (929)
                       ..++++||+++++|.+++...                        ..++.|++.||+|+|+.   +|+||||||+||++
T Consensus        82 -~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~dlkp~Nil~  157 (283)
T cd05091          82 -PLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHKDLATRNVLV  157 (283)
T ss_pred             -ceEEEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---CccccccchhheEe
Confidence             379999999999999887411                        12356899999999998   99999999999999


Q ss_pred             cCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCch
Q 002376          776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPEN  854 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~  854 (929)
                      ++++.+||+|||+++.......    ........+++.|+|||++.++.++.++||||+|++++++.. ...++..... 
T Consensus       158 ~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~-  232 (283)
T cd05091         158 FDKLNVKISDLGLFREVYAADY----YKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-  232 (283)
T ss_pred             cCCCceEecccccccccccchh----eeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCCH-
Confidence            9999999999999886532111    111122346789999999988899999999999988877543 2222211111 


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                       .+     +..........  .........+.+++.+||+.+|++||+++||+++|+.
T Consensus       233 -~~-----~~~~i~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~l~~  282 (283)
T cd05091         233 -QD-----VIEMIRNRQVL--PCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSRLRT  282 (283)
T ss_pred             -HH-----HHHHHHcCCcC--CCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHHhhC
Confidence             11     11111110000  0001112223348889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.96  E-value=4.2e-30  Score=280.23  Aligned_cols=242  Identities=22%  Similarity=0.217  Sum_probs=174.6

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      ++++++.+++++|+..+.||+|+||.||++....               ..+.+.+|+.+++++ +|||++++++++...
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~~   91 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVVKFYGMFYKA   91 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCCeEEEEEEEEec
Confidence            5567788889999999999999999999987641               235677899999999 899999999998765


Q ss_pred             CCCCcceEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      +.......++||||+++|+|.++++..            ..++.|++.||+|||+.   +++||||||+||++++++.+|
T Consensus        92 ~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dlkp~nili~~~~~~k  168 (291)
T cd06639          92 DKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNN---RIIHRDVKGNNILLTTEGGVK  168 (291)
T ss_pred             cccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEE
Confidence            433345689999999999999877521            12357899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCCCC-----CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-----PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      |+|||+++.......      ......|+..|+|||++....     ++.++||||+|++++++.....++..... .. 
T Consensus       169 l~dfg~~~~~~~~~~------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~~-~~-  240 (291)
T cd06639         169 LVDFGVSAQLTSTRL------RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMHP-VK-  240 (291)
T ss_pred             Eeecccchhcccccc------cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCcH-HH-
Confidence            999999886532110      112346889999999976543     68999999999887776544433322211 00 


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          .+..... .........+.....+.+++.+||+.+|++||++.|+++
T Consensus       241 ----~~~~~~~-~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~  286 (291)
T cd06639         241 ----TLFKIPR-NPPPTLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLE  286 (291)
T ss_pred             ----HHHHHhc-CCCCCCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence                0111000 000000001111223444888999999999999999875

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=5.3e-30  Score=273.96  Aligned_cols=224  Identities=21%  Similarity=0.305  Sum_probs=159.8

Q ss_pred             eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          668 LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .||+|+||.||+|.+.                   ...+.|.+|+.++++++||||+++++++..      ...++||||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~------~~~~lv~e~   75 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEA------EALMLVMEM   75 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcC------CCeEEEEEe
Confidence            3899999999987542                   113468899999999999999999998732      237999999


Q ss_pred             cCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          729 LSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       729 ~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      +++|+|.+++...+         .++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++........ 
T Consensus        76 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~-  151 (257)
T cd05115          76 ASGGPLNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGK---NFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSY-  151 (257)
T ss_pred             CCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhc---CeeecccchheEEEcCCCcEEeccCCccccccCCccc-
Confidence            99999999886322         3367899999999998   9999999999999999999999999999865322110 


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                        ........++..|+|||++.+..++.++||||+|++++++.. ...++....       +..+.........  .+.+
T Consensus       152 --~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~~--~~~~  220 (257)
T cd05115         152 --YKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMK-------GPEVMSFIEQGKR--LDCP  220 (257)
T ss_pred             --eeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCCCCCcCcCC-------HHHHHHHHHCCCC--CCCC
Confidence              011112234678999999988889999999999987776432 222221111       1111111111110  0000


Q ss_pred             -HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          879 -DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       879 -~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                       .+..++. +++.+||..+|++||++.+|.+.|+.+
T Consensus       221 ~~~~~~l~-~li~~c~~~~~~~Rp~~~~i~~~l~~~  255 (257)
T cd05115         221 AECPPEMY-ALMKDCWIYKWEDRPNFAKVEERMRTY  255 (257)
T ss_pred             CCCCHHHH-HHHHHHcCCChhhCcCHHHHHHHHhhh
Confidence             1112233 377799999999999999999999864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.96  E-value=3.2e-30  Score=277.69  Aligned_cols=227  Identities=23%  Similarity=0.273  Sum_probs=155.1

Q ss_pred             eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          668 LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .||+|+||+||+|...                   ...+.|.+|+++++.++||||++++++|....     ..++||||
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~-----~~~lv~e~   76 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESI-----PYLLVLEF   76 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCC-----ceEEEEEe
Confidence            5899999999988532                   11346789999999999999999999986533     37999999


Q ss_pred             cCCCCccccccccc-------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          729 LSNGSLGDWIHGER-------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       729 ~~~gsL~~~l~~~~-------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +++|+|.++++..+             .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++.....
T Consensus        77 ~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  153 (269)
T cd05042          77 CPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQA---DFIHSDLALRNCQLTADLSVKIGDYGLALEQYPE  153 (269)
T ss_pred             CCCCcHHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhc---CEecccccHhheEecCCCcEEEeccccccccccc
Confidence            99999999886422             2356899999999998   9999999999999999999999999998754221


Q ss_pred             cCCCCCccccceeccccccccccccCC-------CCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLG-------ERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      ..    ........+++.|+|||++..       ..++.++||||+|++++++.. ...++....+  .+..........
T Consensus       154 ~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~~--~~~~~~~~~~~~  227 (269)
T cd05042         154 DY----YITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLSD--EQVLKQVVREQD  227 (269)
T ss_pred             hh----eeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCCH--HHHHHHHhhccC
Confidence            00    011122346778999998743       357889999999988777543 2222211111  111111111000


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      . .. ..+.........+.+++..|| .||++||+++||++.|.
T Consensus       228 ~-~~-~~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~~l~  268 (269)
T cd05042         228 I-KL-PKPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHELLT  268 (269)
T ss_pred             c-cC-CCCcccccCCHHHHHHHHHHh-cCcccccCHHHHHHHhc
Confidence            0 00 000011112222333666898 59999999999998873

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.96  E-value=4.6e-30  Score=285.59  Aligned_cols=236  Identities=20%  Similarity=0.347  Sum_probs=169.5

Q ss_pred             CCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLD  715 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~  715 (929)
                      .+|...+.||+|+||.||++...                        ...+++.+|+++++++ +||||++++++|...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            36788899999999999987531                        1134688999999999 7999999999986533


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCC
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPG  771 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~  771 (929)
                           ..++||||+++|+|.+++...+                        .++.|++.||+|||+.   +|+||||||+
T Consensus        92 -----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~dlkp~  163 (334)
T cd05100          92 -----PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHRDLAAR  163 (334)
T ss_pred             -----ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ceeccccccc
Confidence                 4799999999999999886421                        1356899999999998   9999999999


Q ss_pred             CeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhc
Q 002376          772 NILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESN  850 (929)
Q Consensus       772 NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~  850 (929)
                      ||++++++.+||+|||+++.......    ........++..|||||++.+..++.++||||+|++++++.. ...++..
T Consensus       164 Nill~~~~~~kL~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~  239 (334)
T cd05100         164 NVLVTEDNVMKIADFGLARDVHNIDY----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPG  239 (334)
T ss_pred             eEEEcCCCcEEECCcccceecccccc----cccccCCCcCceEcCHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999986532110    011122234578999999999999999999999987777532 1111111


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .+  ..+     ............ ....+..++. +++.+||+.+|++||+|.|+++.|+++....
T Consensus       240 ~~--~~~-----~~~~~~~~~~~~-~~~~~~~~l~-~li~~cl~~~p~~Rps~~ell~~l~~~~~~~  297 (334)
T cd05100         240 IP--VEE-----LFKLLKEGHRMD-KPANCTHELY-MIMRECWHAVPSQRPTFKQLVEDLDRVLTVT  297 (334)
T ss_pred             CC--HHH-----HHHHHHcCCCCC-CCCCCCHHHH-HHHHHHcccChhhCcCHHHHHHHHHHHhhhc
Confidence            11  111     111110000000 0011122333 3888999999999999999999999987543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=6e-30  Score=274.41  Aligned_cols=230  Identities=26%  Similarity=0.361  Sum_probs=168.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..++||+|+||.||+|++..              ..+.|.+|++++++++||||+++++++..      ...++||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~------~~~~lv~   79 (262)
T cd05071           6 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIYIVT   79 (262)
T ss_pred             HHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCccCHHHHHHHHHHHHhCCCCCcceEEEEECC------CCcEEEE
Confidence            568889999999999999986542              24578999999999999999999998632      2369999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|+|.++++...          ..+.+++.||+|+|+.   +++||||||+||++++++.+||+|||.++.+....
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~  156 (262)
T cd05071          80 EYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNE  156 (262)
T ss_pred             EcCCCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccCcccEEEcCCCcEEeccCCceeeccccc
Confidence            9999999999986421          2356899999999998   99999999999999999999999999998653221


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .     .......++..|+|||+..+..++.++||||+|++++++.+ ...++.....  .+..+. ......  .... 
T Consensus       157 ~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~~~--~~~~~~-~~~~~~--~~~~-  225 (262)
T cd05071         157 Y-----TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--REVLDQ-VERGYR--MPCP-  225 (262)
T ss_pred             c-----ccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCh--HHHHHH-HhcCCC--CCCc-
Confidence            1     11122346778999999988899999999999988777544 2222211111  111111 000000  0000 


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                        .+ ..+.+.+++.+|++.||++||+++++++.|++.
T Consensus       226 --~~-~~~~l~~li~~~l~~~p~~Rp~~~~~~~~l~~~  260 (262)
T cd05071         226 --PE-CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDY  260 (262)
T ss_pred             --cc-cCHHHHHHHHHHccCCcccCCCHHHHHHHHHHh
Confidence              11 122233488899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.96  E-value=5.3e-30  Score=277.20  Aligned_cols=219  Identities=24%  Similarity=0.256  Sum_probs=157.8

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||.||+++...                   ..+.+..|++++++++||||+++++++..     ....++||||+
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~-----~~~~~lv~e~~   75 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFES-----KTHLCLVMSLM   75 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEec-----CCeEEEEEecC
Confidence            6999999999886541                   12245569999999999999999998854     33589999999


Q ss_pred             CCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          730 SNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       730 ~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      ++|+|.+++....          ..+.|++.|++|||+.   +|+||||||+||++++++.+||+|||++......    
T Consensus        76 ~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~----  148 (277)
T cd05607          76 NGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSM---DIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDG----  148 (277)
T ss_pred             CCCCHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEEEccCChHhEEEcCCCCEEEeeceeeeecCCC----
Confidence            9999988775321          2356899999999998   9999999999999999999999999998765321    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch--hhhccChHHHHhhcccchhhhhh
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN--VLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                         .......|+..|+|||++.+..++.++||||+|+++|++.....++......  ..++.......    ....  . 
T Consensus       149 ---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~~--~-  218 (277)
T cd05607         149 ---KTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLED----EVKF--E-  218 (277)
T ss_pred             ---ceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCCCcchhhHHHHHHHhhcc----cccc--c-
Confidence               1112346899999999999999999999999998887765554443322111  01111111100    0000  0 


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...+...+++++.+|++.||++||+++|+++.
T Consensus       219 ~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~  250 (277)
T cd05607         219 HQNFTEESKDICRLFLAKKPEDRLGSREKNDD  250 (277)
T ss_pred             cccCCHHHHHHHHHHhccCHhhCCCCccchhh
Confidence            01122223447789999999999999776543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.96  E-value=1.4e-29  Score=280.06  Aligned_cols=214  Identities=28%  Similarity=0.298  Sum_probs=153.3

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHH-HHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECE-TLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~-~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||.||+|+...                   ..+.+.+|.. +++.++||||+++++++.+     ....|+||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~-----~~~~~lv~   75 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQT-----AEKLYFVL   75 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEc-----CCEEEEEE
Confidence            469999999999987641                   1123445544 5788999999999998854     33589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~---  149 (321)
T cd05603          76 DYVNGGELFFHLQRERCFLEPRARFYAAEVASAIGYLHSL---NIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEP---  149 (321)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEccCCCCccCCCC---
Confidence            9999999988775332        2367999999999998   9999999999999999999999999998753111   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         ........||+.|+|||++.+..++.++||||+|+++|++..+..++....  ..+..+.....    .........
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~----~~~~~~~~~  220 (321)
T cd05603         150 ---EETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLPPFYSRD--VSQMYDNILHK----PLQLPGGKT  220 (321)
T ss_pred             ---CCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCCCCCCCC--HHHHHHHHhcC----CCCCCCCCC
Confidence               111234579999999999999999999999999999888765544432221  11111111110    000011111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIR  904 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~  904 (929)
                      .    .+.+++.+|++.||++||++.
T Consensus       221 ~----~~~~li~~~l~~~p~~R~~~~  242 (321)
T cd05603         221 V----AACDLLVGLLHKDQRRRLGAK  242 (321)
T ss_pred             H----HHHHHHHHHccCCHhhcCCCC
Confidence            1    223377799999999999864

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=3.6e-30  Score=288.66  Aligned_cols=169  Identities=21%  Similarity=0.302  Sum_probs=139.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccCc----------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGS----------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~----------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ...+|+..+.||+|+||.||+|+....          ......|+.++++++|||||++++++...     ...++||||
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~  138 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKGTTLIEAMLLQNVNHPSVIRMKDTLVSG-----AITCMVLPH  138 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCccccHHHHHHHHhCCCCCCcChhheEEeC-----CeeEEEEEc
Confidence            345799999999999999999987632          23456799999999999999999998653     347999999


Q ss_pred             cCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          729 LSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       729 ~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      +. |+|.+++...         ..++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....    
T Consensus       139 ~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~----  210 (357)
T PHA03209        139 YS-SDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQ---RIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVA----  210 (357)
T ss_pred             cC-CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEecCccccccccC----
Confidence            94 6888877532         23467999999999998   9999999999999999999999999999753211    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                         .......||+.|+|||++.+..++.++||||+|+++|++..
T Consensus       211 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~  251 (357)
T PHA03209        211 ---PAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLA  251 (357)
T ss_pred             ---cccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHH
Confidence               11233579999999999999999999999999998888654

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.96  E-value=7.1e-30  Score=273.24  Aligned_cols=216  Identities=22%  Similarity=0.310  Sum_probs=155.9

Q ss_pred             eeecccCceeEEeccccC-----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          667 NLIGSGSFGSVLHNERTG-----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +.||+|+||.||+|....                       ..+.|.+|+.+++.++||||+++++++....     ..+
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~-----~~~   75 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGD-----ESI   75 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCC-----CcE
Confidence            368999999999986521                       1246778999999999999999999986533     379


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc--------eEEecc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT--------AKVGDF  786 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~--------~ki~Df  786 (929)
                      +||||+++|+|.++++...         .++.||+.|++|||+.   +|+||||||+||+++.++.        +|++||
T Consensus        76 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~  152 (258)
T cd05078          76 MVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDK---GLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDP  152 (258)
T ss_pred             EEEecCCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEEEecccccccCCCceEEeccc
Confidence            9999999999999986432         2357899999999998   9999999999999987765        699999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChH-HH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPE-LR  864 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~  864 (929)
                      |++.....          .....+++.|||||++.+. .++.++||||+|++++++....    ..+...   .++. ..
T Consensus       153 g~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~----~~~~~~---~~~~~~~  215 (258)
T cd05078         153 GISITVLP----------KEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGG----DKPLSA---LDSQKKL  215 (258)
T ss_pred             ccccccCC----------chhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCC----CCChhh---ccHHHHH
Confidence            98864321          1234678899999999874 5799999999998777754431    111110   0110 01


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      .............+.   ++ .+++.+||+.||++|||++|+++.|+
T Consensus       216 ~~~~~~~~~~~~~~~---~~-~~li~~~l~~~p~~Rps~~~il~~l~  258 (258)
T cd05078         216 QFYEDRHQLPAPKWT---EL-ANLINQCMDYEPDFRPSFRAIIRDLN  258 (258)
T ss_pred             HHHHccccCCCCCcH---HH-HHHHHHHhccChhhCCCHHHHHHhcC
Confidence            111111111111112   22 33777999999999999999998863

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.96  E-value=9.8e-30  Score=281.81  Aligned_cols=220  Identities=24%  Similarity=0.263  Sum_probs=156.6

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+++...                   ..+.+.+|+.++.++ +||||+++++++..     ....|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~-----~~~~~lv~   75 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQT-----TSRLFLVI   75 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEe-----CCEEEEEE
Confidence            469999999999887541                   123467899998888 69999999998854     33589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....   
T Consensus        76 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~---  149 (327)
T cd05617          76 EYVNGGDLMFHMQRQRKLPEEHARFYAAEICIALNFLHER---GIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGP---  149 (327)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEeCCCCEEEeccccceeccCC---
Confidence            9999999988775332        3467899999999998   9999999999999999999999999998743111   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|||||++.+..++.++||||+|++++++..+..++.........-....+........   ...+
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~---~~~p  223 (327)
T cd05617         150 ---GDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKP---IRIP  223 (327)
T ss_pred             ---CCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHHHhCC---CCCC
Confidence               1112345799999999999999999999999999888887665555432211000000001111110000   0111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      ..+..-+.+++.+|++.||++||++
T Consensus       224 ~~~~~~~~~li~~~L~~dP~~R~~~  248 (327)
T cd05617         224 RFLSVKASHVLKGFLNKDPKERLGC  248 (327)
T ss_pred             CCCCHHHHHHHHHHhccCHHHcCCC
Confidence            1122223347779999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.96  E-value=5.1e-30  Score=287.81  Aligned_cols=179  Identities=25%  Similarity=0.282  Sum_probs=142.0

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~  719 (929)
                      ..++|+..+.||+|+||.||++....                  ..+.+.+|+.+++.++||||+++++++..... ...
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            45789999999999999999886541                  13467789999999999999999998864332 122


Q ss_pred             ceEEEEEEecCCCCccccccc------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHG------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ...|+||||+++ ++.+++..      ...++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDikp~Nill~~~~~~kl~Dfg~~~~~~  170 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  170 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEECCCCCEEEeeCcccccCC
Confidence            357999999965 66665542      123467999999999998   99999999999999999999999999998542


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ..       .......||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       171 ~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf  218 (355)
T cd07874         171 TS-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF  218 (355)
T ss_pred             Cc-------cccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence            11       1123347899999999999999999999999999888765554433

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.96  E-value=1.1e-29  Score=280.07  Aligned_cols=217  Identities=24%  Similarity=0.284  Sum_probs=155.7

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||.||+|+...                   ..+.+..|..++... +||||+++++++..     ....|+||
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~-----~~~~~lv~   75 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQT-----KEHLFFVM   75 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEe-----CCEEEEEE
Confidence            469999999999987652                   123456677777754 89999999999854     34589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        76 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~---  149 (316)
T cd05620          76 EFLNGGDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSK---GIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFG---  149 (316)
T ss_pred             CCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHeEECCCCCEEeCccCCCeecccC---
Confidence            9999999998876432        2356899999999998   9999999999999999999999999998743111   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|+|||++.+..++.++||||+|++++++..+..++.....  .     .+.........   ..+
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~Pf~~~~~--~-----~~~~~~~~~~~---~~~  216 (316)
T cd05620         150 ---DNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQSPFHGDDE--D-----ELFESIRVDTP---HYP  216 (316)
T ss_pred             ---CCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--H-----HHHHHHHhCCC---CCC
Confidence               1122345799999999999999999999999999887776554443322211  1     11111100000   000


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHH-HHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIR-EAL  907 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~-ev~  907 (929)
                      ..+..-+++++.+|++.||++||++. ++.
T Consensus       217 ~~~~~~~~~li~~~l~~dP~~R~~~~~~~~  246 (316)
T cd05620         217 RWITKESKDILEKLFERDPTRRLGVVGNIR  246 (316)
T ss_pred             CCCCHHHHHHHHHHccCCHHHcCCChHHHH
Confidence            11112223377799999999999985 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-29  Score=278.13  Aligned_cols=228  Identities=25%  Similarity=0.257  Sum_probs=175.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+.|+..+.||+|.||.||+++.+.                   +.+.+.+|+++|+++. |||||.++++|.+..    
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~----  109 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPD----  109 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCC----
Confidence            4578888999999999999987652                   2357889999999998 999999999995543    


Q ss_pred             ceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC----CceEEecccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE----MTAKVGDFGL  788 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~----~~~ki~DfGl  788 (929)
                       .+++|||++.||.|.+.+...       .....||+.|++|||+.   +|+|||+||+|+|+...    +.+|++|||+
T Consensus       110 -~~~lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~---gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGl  185 (382)
T KOG0032|consen  110 -SVYLVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSL---GVVHRDLKPENLLLASKDEGSGRIKLIDFGL  185 (382)
T ss_pred             -eEEEEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhC---CceeccCCHHHeeeccccCCCCcEEEeeCCC
Confidence             589999999999999988653       12357899999999997   99999999999999533    5799999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      |+....       .......+||++|+|||++....|+..+||||.|++.|.+     ..+..|..... -.........
T Consensus       186 a~~~~~-------~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiL-----L~G~~PF~~~~-~~~~~~~i~~  252 (382)
T KOG0032|consen  186 AKFIKP-------GERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYIL-----LSGVPPFWGET-EFEIFLAILR  252 (382)
T ss_pred             ceEccC-------CceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHH-----hhCCCCCcCCC-hhHHHHHHHc
Confidence            997642       2345667999999999999999999999999999766654     34444431110 0011112222


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+.....+.++.+.+-+++++.+|+..||.+|+|+.++++
T Consensus       253 ~~~~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~  292 (382)
T KOG0032|consen  253 GDFDFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQ  292 (382)
T ss_pred             CCCCCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhc
Confidence            2223333444556666777888999999999999999998

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.96  E-value=2.5e-29  Score=270.33  Aligned_cols=234  Identities=23%  Similarity=0.322  Sum_probs=171.8

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|...                   ...+.+.+|++++++++|+|++++++++...     ..
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~-----~~   76 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIEN-----NE   76 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecC-----Ce
Confidence            57889999999999999998764                   1245788999999999999999999998643     34


Q ss_pred             EEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      .++||||+++|+|.+++...            ..++.+++.|++|||+.   +|+||||||+||++++++.+|++|||++
T Consensus        77 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~nil~~~~~~~~l~d~~~~  153 (267)
T cd08224          77 LNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSK---RIMHRDIKPANVFITATGVVKLGDLGLG  153 (267)
T ss_pred             EEEEEecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecCCcChhhEEECCCCcEEEecccee
Confidence            79999999999999887521            12256899999999998   9999999999999999999999999998


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +......      .......|++.|+|||++.+..++.++||||+|++++++.....++........+..+.........
T Consensus       154 ~~~~~~~------~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~  227 (267)
T cd08224         154 RFFSSKT------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEKCDYPP  227 (267)
T ss_pred             eeccCCC------cccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccCCccHHHHHhhhhcCCCCC
Confidence            8653211      1122346889999999999889999999999998777754433222111101111111111110000


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                           .. .......+.+++.+||+.+|++||++.+|+++|++++
T Consensus       228 -----~~-~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~~~~~~~  266 (267)
T cd08224         228 -----LP-ADHYSEELRDLVSRCINPDPEKRPDISYVLQVAKEMH  266 (267)
T ss_pred             -----CC-hhhcCHHHHHHHHHHcCCCcccCCCHHHHHHHHHHhc
Confidence                 00 0112223334777999999999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.96  E-value=2.2e-29  Score=268.86  Aligned_cols=225  Identities=23%  Similarity=0.282  Sum_probs=167.3

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +|+..+.||+|+||.||++....                 ..+.+.+|+.+++.++||||+++++++.+     ....++
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~l   75 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEA-----DGHLYI   75 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEE-----CCEEEE
Confidence            46778999999999999886541                 23567889999999999999999999854     345899


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||+++|+|.+++...+          .++.+++.||+|||+.   +|+|+||||+||++++++.++++|||.++....
T Consensus        76 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~  152 (255)
T cd08219          76 VMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEK---RVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTS  152 (255)
T ss_pred             EEeeCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEECCCCcEEEcccCcceeecc
Confidence            999999999998875321          2367899999999998   999999999999999999999999999976532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      ..      .......|++.|+|||++.+..++.++||||+|++++++.....++.....  .... ..+..   ....  
T Consensus       153 ~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~--~~~~-~~~~~---~~~~--  218 (255)
T cd08219         153 PG------AYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQANSW--KNLI-LKVCQ---GSYK--  218 (255)
T ss_pred             cc------cccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCCCCCH--HHHH-HHHhc---CCCC--
Confidence            11      112235689999999999988999999999999999887665544432211  1100 00100   0000  


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                       ..+......+.+++.+||+.||++||++.|++.+
T Consensus       219 -~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         219 -PLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             -CCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence             0001122233447789999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.96  E-value=1.1e-29  Score=279.93  Aligned_cols=217  Identities=26%  Similarity=0.341  Sum_probs=157.0

Q ss_pred             eeecccCceeEEeccccCc-------------------HHHHHHHHHHHHc-cCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRN-VRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~-l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+|+....                   .+.+..|..++.. .+||||+++++++.+.     ...++||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~-----~~~~lv~   75 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTK-----ENLFFVM   75 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeC-----CEEEEEE
Confidence            4699999999999876521                   2345667888876 4899999999998543     3589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....   
T Consensus        76 ey~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~---  149 (316)
T cd05619          76 EYLNGGDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSK---GIVYRDLKLDNILLDTDGHIKIADFGMCKENMLG---  149 (316)
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeCCCCHHHEEECCCCCEEEccCCcceECCCC---
Confidence            9999999999886432        3367899999999998   9999999999999999999999999998743111   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         ........||+.|||||++.+..++.++||||+|+++|++..+..++.....  .+... .+..   ......    
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~pf~~~~~--~~~~~-~i~~---~~~~~~----  216 (316)
T cd05619         150 ---DAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQSPFHGHDE--EELFQ-SIRM---DNPCYP----  216 (316)
T ss_pred             ---CCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCCCH--HHHHH-HHHh---CCCCCC----
Confidence               1122345799999999999999999999999999888876554443322111  11111 0110   000000    


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHH-HHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIR-EAL  907 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~-ev~  907 (929)
                      .....-+++++.+|++.||++||++. ++.
T Consensus       217 ~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  246 (316)
T cd05619         217 RWLTREAKDILVKLFVREPERRLGVKGDIR  246 (316)
T ss_pred             ccCCHHHHHHHHHHhccCHhhcCCChHHHH
Confidence            11122233477799999999999997 554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.96  E-value=5.7e-30  Score=280.50  Aligned_cols=233  Identities=18%  Similarity=0.295  Sum_probs=168.3

Q ss_pred             CCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~  717 (929)
                      ++|...+.||+|+||.||++...                      ...+.+.+|+++++++ +||||+++++++...+  
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~--  112 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGG--  112 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC--
Confidence            46888899999999999987531                      1124688999999999 7999999999985433  


Q ss_pred             CcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                         ..++||||+++|+|.++++...          .++.+++.|++|||+.   +|+||||||+||++++++.+|++|||
T Consensus       113 ---~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~l~dfg  186 (302)
T cd05055         113 ---PILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNVLLTHGKIVKICDFG  186 (302)
T ss_pred             ---ceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeehhhhccceEEEcCCCeEEECCCc
Confidence               3799999999999999986432          2356899999999998   89999999999999999999999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHh
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      +++.......    ........++..|+|||++.+..++.++||||+|++++++.. ...++...+.      +......
T Consensus       187 ~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~~------~~~~~~~  256 (302)
T cd05055         187 LARDIMNDSN----YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPV------DSKFYKL  256 (302)
T ss_pred             ccccccCCCc----eeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCCc------hHHHHHH
Confidence            9986532211    011112346788999999999999999999999988777543 2222221111      1111111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .......  .........+.+++.+|++.+|++||++.|+++.|+++
T Consensus       257 ~~~~~~~--~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~~l~~~  301 (302)
T cd05055         257 IKEGYRM--AQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQLIGKQ  301 (302)
T ss_pred             HHcCCcC--CCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHhh
Confidence            1100000  00001112233477799999999999999999999874

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.96  E-value=9.8e-30  Score=280.72  Aligned_cols=218  Identities=24%  Similarity=0.282  Sum_probs=158.8

Q ss_pred             eeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+++...                   ..+.+.+|.++++.+ +||||+++++++..     ....|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~-----~~~~~lv~   75 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQT-----KDRLFFVM   75 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEc-----CCEEEEEE
Confidence            469999999999987642                   123466788888887 69999999999854     33589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....   
T Consensus        76 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~---  149 (318)
T cd05570          76 EYVNGGDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHER---GIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILG---  149 (318)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEccCCCHHHeEECCCCcEEecccCCCeecCcC---
Confidence            9999999998876432        2367899999999998   9999999999999999999999999998743111   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                         .......+||+.|||||++.+..++.++||||+|++++++..+..++.....  .+..    ...........    
T Consensus       150 ---~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~pf~~~~~--~~~~----~~i~~~~~~~~----  216 (318)
T cd05570         150 ---GVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQSPFEGDDE--DELF----QSILEDEVRYP----  216 (318)
T ss_pred             ---CCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCCCCCCCCH--HHHH----HHHHcCCCCCC----
Confidence               1112335799999999999999999999999999887776554444322211  1100    00000011000    


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCH-----HHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGI-----REALR  908 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~-----~ev~~  908 (929)
                      ..+...+.+++.+||+.||++||++     .++++
T Consensus       217 ~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~  251 (318)
T cd05570         217 RWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKG  251 (318)
T ss_pred             CcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhc
Confidence            1112223347779999999999999     77764

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.96  E-value=9.9e-30  Score=279.54  Aligned_cols=172  Identities=23%  Similarity=0.348  Sum_probs=142.0

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||++....                 ..+++.+|++++++++||||++++++|...     .+.+
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   75 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSD-----GEIS   75 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC-----CEEE
Confidence            468889999999999999986541                 124578999999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++|+|.++++...        .++.|++.||+|||+.+  +++||||||+||++++++.+||+|||+++.....
T Consensus        76 lv~ey~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~  153 (308)
T cd06615          76 ICMEHMDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  153 (308)
T ss_pred             EEeeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhC--CEEECCCChHHEEEecCCcEEEccCCCccccccc
Confidence            9999999999999986432        33678999999999732  8999999999999999999999999998754211


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                              ......|+..|+|||++.+..++.++||||+|++++++.+...+
T Consensus       154 --------~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p  197 (308)
T cd06615         154 --------MANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYP  197 (308)
T ss_pred             --------ccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCC
Confidence                    12234789999999999888899999999999888876655443

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.96  E-value=3.3e-29  Score=272.05  Aligned_cols=242  Identities=25%  Similarity=0.323  Sum_probs=173.5

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------C--cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------G--SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~--~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.|+..+.||+|+||.||++++.                   .  ..+.|.+|++++++++||||+++++++...   ..
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~---~~   80 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKP---GG   80 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecC---CC
Confidence            35667789999999999998742                   1  245799999999999999999999988542   23


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.+++....         .++.+++.||+|||+.   +++||||||+||+++.++.+|++|||.++
T Consensus        81 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~  157 (284)
T cd05038          81 RSLRLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQ---RYIHRDLAARNILVESEDLVKISDFGLAK  157 (284)
T ss_pred             CceEEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEccccccc
Confidence            45799999999999999986433         2367899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh--------ccChH
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ--------VLDPE  862 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~--------~~~~~  862 (929)
                      ........   ........++..|+|||++.+..++.++||||+|++++++.+...++...+.....        .....
T Consensus       158 ~~~~~~~~---~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~  234 (284)
T cd05038         158 VLPEDKDY---YYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTR  234 (284)
T ss_pred             ccccCCcc---eeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHH
Confidence            76422110   01111124566799999999889999999999999999976655333221111100        00111


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      +........... ....+..++.+ ++.+||+.+|++||+|.||+++|+++
T Consensus       235 ~~~~~~~~~~~~-~~~~~~~~~~~-li~~cl~~~p~~Rpt~~ei~~~l~~i  283 (284)
T cd05038         235 LLELLKEGERLP-RPPSCPDEVYD-LMKLCWEAEPQDRPSFADLILIVDRL  283 (284)
T ss_pred             HHHHHHcCCcCC-CCccCCHHHHH-HHHHHhccChhhCCCHHHHHHHHhhc
Confidence            111111111000 00111223334 88899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.96  E-value=6.4e-30  Score=278.33  Aligned_cols=236  Identities=23%  Similarity=0.299  Sum_probs=163.1

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHcc---CCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNV---RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||+||+|+...                  ....+.+|+++++++   +||||+++++++.........
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            47788999999999999987652                  123466788877765   799999999998764434445


Q ss_pred             eEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ..++||||++ ++|.+++...          +.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        81 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~dikp~Nili~~~~~~kl~dfg~~~  156 (288)
T cd07863          81 KVTLVFEHVD-QDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGQVKLADFGLAR  156 (288)
T ss_pred             eEEEEEcccc-cCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccCccc
Confidence            6899999997 5888877532          12367899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC-------h
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD-------P  861 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~-------~  861 (929)
                      .....       .......||..|+|||++.+..++.++||||+|++++++....-++.....  ...++.+       .
T Consensus       157 ~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~~~~~~~~~~~~~~~~~~~~  229 (288)
T cd07863         157 IYSCQ-------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPED  229 (288)
T ss_pred             cccCc-------ccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCCCHHHHHHHHHHHhCCCChh
Confidence            65321       112234689999999999999999999999999888776443322211111  0101000       0


Q ss_pred             HHHH-------hhccc-chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQ-------LMTSN-ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~-------~~~~~-~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....       ..... ..........+.+.+++++.+|++.||++|||+.|++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~  284 (288)
T cd07863         230 DWPRDVTLPRGAFSPRGPRPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQ  284 (288)
T ss_pred             hCcccccccccccCCCCCCchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence            0000       00000 00000000112233445888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=1.1e-29  Score=273.33  Aligned_cols=233  Identities=21%  Similarity=0.299  Sum_probs=167.0

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      |++.+++++.....||+|+||.||+|....                ..+.+.+|++++++++||||+++++++...    
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~----   77 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSEN----   77 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccC----
Confidence            345677788888899999999999997541                245788999999999999999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~Df  786 (929)
                       ...++||||+++++|.++++...           .++.|++.|++|||+.   +|+||||||+||+++. ++.+||+||
T Consensus        78 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~dl~p~nil~~~~~~~~~l~df  153 (268)
T cd06624          78 -GFFKIFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDN---QIVHRDIKGDNVLVNTYSGVVKISDF  153 (268)
T ss_pred             -CEEEEEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCeEEEecc
Confidence             35899999999999999886421           1246899999999998   9999999999999976 679999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |.+.......      .......|+..|+|||++.+..  ++.++||||+|++++++.....++................
T Consensus       154 g~~~~~~~~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~~~~~~~~~~~  227 (268)
T cd06624         154 GTSKRLAGIN------PCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIELGEPQAAMFKVGMF  227 (268)
T ss_pred             hhheecccCC------CccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccccChhhhHhhhhhh
Confidence            9987653211      1112235889999999987654  7899999999988777654433322211110001110000


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .   ...    ..+.....-+.+++.+||+.+|++||||.|+++
T Consensus       228 ~---~~~----~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~  264 (268)
T cd06624         228 K---IHP----EIPESLSAEAKNFILRCFEPDPDKRASAHDLLQ  264 (268)
T ss_pred             c---cCC----CCCcccCHHHHHHHHHHcCCCchhCCCHHHHHh
Confidence            0   000    011112222333777999999999999999875

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=8.4e-30  Score=272.47  Aligned_cols=227  Identities=25%  Similarity=0.297  Sum_probs=163.8

Q ss_pred             eeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||.||+|.+.                    ...+++.+|++++++++|||||++++++..      ...++||
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~v~   74 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG------EPLMLVM   74 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC------CceEEEE
Confidence            46999999999988642                    123568899999999999999999998742      2369999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.|++.|++|||+.   +++||||||+||++++++.+||+|||+++........
T Consensus        75 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~  151 (257)
T cd05060          75 ELAPLGPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESK---HFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDY  151 (257)
T ss_pred             EeCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhc---CeeccCcccceEEEcCCCcEEeccccccceeecCCcc
Confidence            9999999999986433        3367899999999998   8999999999999999999999999999866422111


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                         ........++..|+|||.+.+..++.++||||+|++++++.. ...++.....       ..+.........  ...
T Consensus       152 ---~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~~g~~p~~~~~~-------~~~~~~~~~~~~--~~~  219 (257)
T cd05060         152 ---YRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFSYGAKPYGEMKG-------AEVIAMLESGER--LPR  219 (257)
T ss_pred             ---cccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHcCCCCCcccCCH-------HHHHHHHHcCCc--CCC
Confidence               111112234578999999999999999999999987766542 2222221111       111111111100  011


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      +......+++++.+||..+|++||++.++++.|+++.
T Consensus       220 ~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~~l~~~~  256 (257)
T cd05060         220 PEECPQEIYSIMLSCWKYRPEDRPTFSELESTFRRDP  256 (257)
T ss_pred             CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhcc
Confidence            1112233445888999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.96  E-value=5e-30  Score=281.25  Aligned_cols=234  Identities=22%  Similarity=0.287  Sum_probs=169.9

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||.||+|.+.                     ....++.+|+.++++++||||++++++|...     
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-----   81 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-----   81 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-----
Confidence            46777889999999999998642                     0123678999999999999999999998542     


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                       ..++|+||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus        82 -~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dikp~Nill~~~~~~kL~Dfg~~~  157 (303)
T cd05110          82 -TIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEER---RLVHRDLAARNVLVKSPNHVKITDFGLAR  157 (303)
T ss_pred             -CceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhc---CeeccccccceeeecCCCceEEccccccc
Confidence             2579999999999999886432         2357999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      .......    ........++..|||||++.+..++.++||||+|++++++.. ...++...+. ...+.+        .
T Consensus       158 ~~~~~~~----~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~t~g~~p~~~~~~~~~~~~~--------~  225 (303)
T cd05110         158 LLEGDEK----EYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELMTFGGKPYDGIPTREIPDLL--------E  225 (303)
T ss_pred             cccCccc----ccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH--------H
Confidence            6532211    011122345778999999999999999999999988777543 2222221111 111111        1


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ..... .....+...+.. ++.+||..+|++||+|+|+++.++++....
T Consensus       226 ~~~~~-~~~~~~~~~~~~-li~~c~~~~p~~Rp~~~~l~~~l~~~~~~~  272 (303)
T cd05110         226 KGERL-PQPPICTIDVYM-VMVKCWMIDADSRPKFKELAAEFSRMARDP  272 (303)
T ss_pred             CCCCC-CCCCCCCHHHHH-HHHHHcCCChhhCcCHHHHHHHHHHHHhch
Confidence            00000 000111223333 788999999999999999999999986654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.96  E-value=2.4e-29  Score=270.92  Aligned_cols=234  Identities=21%  Similarity=0.293  Sum_probs=166.2

Q ss_pred             CCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +|+..+.||+|+||.||+|...                    ...++|..|+.++++++||||+++++++...     ..
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~-----~~   79 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS-----RP   79 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCC-----Cc
Confidence            4677899999999999987643                    1135788999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+++|+|.++++...         .++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++..
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~---g~~H~dl~p~nili~~~~~~kl~dfg~~~~~  156 (269)
T cd05065          80 VMIITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEM---NYVHRDLAARNILVNSNLVCKVSDFGLSRFL  156 (269)
T ss_pred             eEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccChheEEEcCCCcEEECCCcccccc
Confidence            799999999999999886422         2356899999999998   9999999999999999999999999998865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ........ ........++..|+|||++.+..++.++||||+|++++++.. ...++.....  .     ..........
T Consensus       157 ~~~~~~~~-~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~l~~g~~p~~~~~~--~-----~~~~~i~~~~  228 (269)
T cd05065         157 EDDTSDPT-YTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSN--Q-----DVINAIEQDY  228 (269)
T ss_pred             ccCccccc-cccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHHhcCCCCCCCCCCH--H-----HHHHHHHcCC
Confidence            32211110 001111122457999999999999999999999988777432 2222211111  1     1111111100


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                        +.......+..+.+++.+||+.+|++||+|++++.+|+++
T Consensus       229 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  268 (269)
T cd05065         229 --RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVSTLDKM  268 (269)
T ss_pred             --cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence              0000011122233477899999999999999999998875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=1.1e-29  Score=274.32  Aligned_cols=215  Identities=22%  Similarity=0.259  Sum_probs=152.9

Q ss_pred             eecccCceeEEecccc----------------------------------------CcHHHHHHHHHHHHccCCccccce
Q 002376          668 LIGSGSFGSVLHNERT----------------------------------------GSWKSFIAECETLRNVRHRNLVKL  707 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~----------------------------------------~~~~~~~~E~~~l~~l~Hpniv~l  707 (929)
                      .||+|+||.||+|...                                        ...++|.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            5899999999998742                                        012467789999999999999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                      +++|.+..     ..++||||+++|+|.++++..+         .++.|+++||+|||+.   +|+||||||+||++++.
T Consensus        82 ~~~~~~~~-----~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~dlkp~Nill~~~  153 (274)
T cd05076          82 HGVCVRGS-----ENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDK---NLVHGNVCAKNILLARL  153 (274)
T ss_pred             EEEEEeCC-----ceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcC---CccCCCCCcccEEEecc
Confidence            99996533     4799999999999998886422         2367999999999998   99999999999999764


Q ss_pred             C-------ceEEeccccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhc
Q 002376          779 M-------TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESN  850 (929)
Q Consensus       779 ~-------~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~  850 (929)
                      +       .+|++|||+++....          .....++..|+|||++.+ ..++.++||||+|++++++.+    .+.
T Consensus       154 ~~~~~~~~~~kl~d~g~~~~~~~----------~~~~~~~~~~~aPe~~~~~~~~~~~~Dv~slG~~l~el~~----~g~  219 (274)
T cd05076         154 GLAEGTSPFIKLSDPGVSFTALS----------REERVERIPWIAPECVPGGNSLSTAADKWSFGTTLLEICF----DGE  219 (274)
T ss_pred             CcccCccceeeecCCcccccccc----------ccccccCCcccCchhhcCCCCCCcHHHHHHHHHHHHHHHh----CCC
Confidence            4       479999998864321          112357888999998876 458999999999987776421    122


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      .|..  .....................   ...+.+ ++.+||+.+|++||+|.++++.|
T Consensus       220 ~p~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~-li~~cl~~~p~~Rps~~~il~~L  273 (274)
T cd05076         220 VPLK--ERTPSEKERFYEKKHRLPEPS---CKELAT-LISQCLTYEPTQRPSFRTILRDL  273 (274)
T ss_pred             CCcc--ccChHHHHHHHHhccCCCCCC---ChHHHH-HHHHHcccChhhCcCHHHHHHhh
Confidence            2210  000111111111111000001   122333 78899999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.96  E-value=1.9e-29  Score=270.55  Aligned_cols=216  Identities=21%  Similarity=0.266  Sum_probs=154.4

Q ss_pred             eeecccCceeEEecccc----------------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          667 NLIGSGSFGSVLHNERT----------------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~----------------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      +.||+|+||.||+|+..                            ...+.|.+|+.+++.++||||+++++++....   
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~---   77 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDV---   77 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---
Confidence            36899999999999732                            11236778899999999999999999986433   


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc-------eE
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT-------AK  782 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~-------~k  782 (929)
                        ..++||||+++|+|..+++...         .++.||+.||+|||+.   +|+||||||+|||++.++.       +|
T Consensus        78 --~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~~~~~~~~~  152 (262)
T cd05077          78 --ENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDK---DLVHGNVCTKNILLAREGIDGECGPFIK  152 (262)
T ss_pred             --CCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhC---CeECCCCCcccEEEecCCccCCCCceeE
Confidence              3699999999999988876321         3467999999999998   9999999999999987664       89


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccC-CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      ++|||++.....          .....|+..|||||++. +..++.++||||+|+++|++..    .+..|.....  ..
T Consensus       153 l~d~g~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~el~~----~~~~p~~~~~--~~  216 (262)
T cd05077         153 LSDPGIPITVLS----------RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWEICY----NGEIPLKDKT--LA  216 (262)
T ss_pred             eCCCCCCccccC----------cccccccccccChhhhcCCCCCCchhHHHHHHHHHHHHHh----CCCCCCCCcc--hh
Confidence            999999875421          12236788999999887 4668999999999988777531    1222221000  00


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      ..............+.   ...+ ++++.+||+.||++||++.|+++.+
T Consensus       217 ~~~~~~~~~~~~~~~~---~~~~-~~li~~cl~~dp~~Rp~~~~il~~~  261 (262)
T cd05077         217 EKERFYEGQCMLVTPS---CKEL-ADLMTHCMNYDPNQRPFFRAIMRDI  261 (262)
T ss_pred             HHHHHHhcCccCCCCC---hHHH-HHHHHHHcCCChhhCcCHHHHHHhc
Confidence            1111000000000111   1222 3378899999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.96  E-value=1.3e-29  Score=286.32  Aligned_cols=178  Identities=24%  Similarity=0.306  Sum_probs=140.2

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++....                  ..+++.+|+++++.++||||+++++++...+.......|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            47788999999999999987531                  235678999999999999999999998765432233689


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+. ++|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....
T Consensus        81 lv~e~~~-~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~  156 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSA---GILHRDIKPGNLLVNSNCVLKICDFGLARVEEPD  156 (372)
T ss_pred             EEeeccc-cCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChHHEEECCCCCEEeccccceeecccC
Confidence            9999996 57877664322        2367899999999998   9999999999999999999999999999864321


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .     ........+|+.|+|||++.+. .++.++||||+|++++++..+..++
T Consensus       157 ~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  205 (372)
T cd07853         157 E-----SKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILF  205 (372)
T ss_pred             c-----cccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCC
Confidence            1     1112234689999999998875 4799999999998888865554433

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.96  E-value=1e-29  Score=276.82  Aligned_cols=232  Identities=22%  Similarity=0.321  Sum_probs=166.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||.||+++..+                      ..++|.+|+.++++++||||+++++++...+  
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~--   81 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGK--   81 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCC--
Confidence            4578889999999999999976421                      1356889999999999999999999986533  


Q ss_pred             CcceEEEEEEecCCCCcccccccc------------------------------ccccccHHHHHHHhhhCCCCCEEecC
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGE------------------------------RKNELDITSALDYLHNDCEVPVVHSD  767 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~------------------------------~~~~~~ia~aL~yLH~~~~~~iiHrD  767 (929)
                         ..++||||+++|+|.++++..                              ..++.|++.||+|||+.   +++|||
T Consensus        82 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~d  155 (288)
T cd05050          82 ---PMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHRD  155 (288)
T ss_pred             ---ccEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---Ceeccc
Confidence               379999999999999998632                              12467899999999998   999999


Q ss_pred             CCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHH
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKW  846 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~  846 (929)
                      |||+||++++++.+||+|||+++.+.....    ........++..|+|||++.+..++.++||||+|++++++.. ...
T Consensus       156 l~p~nil~~~~~~~~l~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~  231 (288)
T cd05050         156 LATRNCLVGENMVVKIADFGLSRNIYSADY----YKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQ  231 (288)
T ss_pred             ccHhheEecCCCceEECccccceecccCcc----ccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999876532111    001112234678999999998999999999999988777532 111


Q ss_pred             hhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          847 VESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       847 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ++...  ...+     ............. ...+..++.+ ++.+|++.+|++|||+.|+++.|++
T Consensus       232 p~~~~--~~~~-----~~~~~~~~~~~~~-~~~~~~~l~~-li~~~l~~~p~~Rpt~~el~~~l~~  288 (288)
T cd05050         232 PYYGM--AHEE-----VIYYVRDGNVLSC-PDNCPLELYN-LMRLCWSKLPSDRPSFASINRILQR  288 (288)
T ss_pred             CCCCC--CHHH-----HHHHHhcCCCCCC-CCCCCHHHHH-HHHHHcccCcccCCCHHHHHHHhhC
Confidence            11111  1111     1111100000000 0011123333 7889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.96  E-value=7.1e-30  Score=273.54  Aligned_cols=229  Identities=22%  Similarity=0.321  Sum_probs=167.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|...+.||+|+||.||++....              ..+.|.+|++++++++|||++++++++..      ...++||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~~~~~v~   79 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPLYAVVSE------EPIYIVT   79 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCCccHHHHHHHHHHHHhCCCCCeeeEEEEEcC------CCcEEEE
Confidence            457788999999999999987541              23578899999999999999999998732      2368999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|+|.++++...          .++.+++.||+|||+.   +++||||||+||++++++.+||+|||.++......
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05069          80 EFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERM---NYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EcCCCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccCcceEEEcCCCeEEECCCccceEccCCc
Confidence            9999999999886421          2356899999999998   89999999999999999999999999998653211


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .     .......++..|+|||+..+..++.++||||+|++++++.. ...++....       +............  .
T Consensus       157 ~-----~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~--~  222 (260)
T cd05069         157 Y-----TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMV-------NREVLEQVERGYR--M  222 (260)
T ss_pred             c-----cccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHcCCC--C
Confidence            0     11112346778999999998899999999999987776543 222221111       1111111111100  0


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ..+...+..+++++.+||+.||++||++++|.+.|++
T Consensus       223 ~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  259 (260)
T cd05069         223 PCPQGCPESLHELMKLCWKKDPDERPTFEYIQSFLED  259 (260)
T ss_pred             CCCcccCHHHHHHHHHHccCCcccCcCHHHHHHHHhc
Confidence            1111122334457779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.96  E-value=3.4e-29  Score=268.61  Aligned_cols=231  Identities=23%  Similarity=0.327  Sum_probs=162.8

Q ss_pred             eeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+|...                    ...+.+.+|+.+++.++||||+++++++...+    ...++||
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~----~~~~lv~   76 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSE----GSPLVVL   76 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCC----CCcEEEE
Confidence            46899999999987632                    11346788999999999999999999875432    2368999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.++++...         ..+.+++.|++|||+.   +++||||||+||++++++.+||+|||+++.+.....
T Consensus        77 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~  153 (262)
T cd05058          77 PYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASK---KFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY  153 (262)
T ss_pred             ecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCccccccccCCcc
Confidence            9999999999986322         2246899999999997   999999999999999999999999999986532110


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                      .  .........++..|+|||++.+..++.++||||+|++++++....    ..+.....  .............  ...
T Consensus       154 ~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~~----~~~~~~~~--~~~~~~~~~~~~~--~~~  223 (262)
T cd05058         154 Y--SVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRG----APPYPDVD--SFDITVYLLQGRR--LLQ  223 (262)
T ss_pred             e--eecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHHHcCC----CCCCCCCC--HHHHHHHHhcCCC--CCC
Confidence            0  011112335677899999998889999999999998777653321    11110000  0011111111000  000


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      .+..+..+.+++.+||+.+|++||++.|+++.|+++.
T Consensus       224 ~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~~l~~~~  260 (262)
T cd05058         224 PEYCPDPLYEVMLSCWHPKPEMRPTFSELVSRIEQIF  260 (262)
T ss_pred             CCcCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHh
Confidence            1111222334888999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.96  E-value=1.4e-29  Score=285.19  Aligned_cols=179  Identities=24%  Similarity=0.280  Sum_probs=142.8

Q ss_pred             hhCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCC-CCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~  719 (929)
                      ..++|+..+.||+|+||.||++...                  ...+.+.+|+.+++.++||||+++++++...+. ...
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            3568999999999999999988653                  123467789999999999999999998754332 122


Q ss_pred             ceEEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ...|+||||+++ ++.+++...      ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~  177 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  177 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEECCCCcEEEEeCCCccccC
Confidence            357999999964 676665421      23467999999999998   99999999999999999999999999998642


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ..       .......||+.|+|||++.+..++.++||||+|+++|++..+..++
T Consensus       178 ~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf  225 (364)
T cd07875         178 TS-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLF  225 (364)
T ss_pred             CC-------CcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCC
Confidence            11       1123347899999999999999999999999999888876655444

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.96  E-value=2.8e-29  Score=270.07  Aligned_cols=233  Identities=21%  Similarity=0.271  Sum_probs=167.5

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|+..                    ...+.|.+|+.++++++||||+++++++...     .
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~   78 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKS-----K   78 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecC-----C
Confidence            46778899999999999987642                    1135788999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++....         .++.|++.|++|||+.   +++||||||+||+++.++.+|++|||+++.
T Consensus        79 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~dlkp~nili~~~~~~~l~dfg~~~~  155 (267)
T cd05066          79 PVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILVNSNLVCKVSDFGLSRV  155 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeehhhchhcEEECCCCeEEeCCCCcccc
Confidence            4799999999999999986431         2356899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      +.....   .........++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+     ........
T Consensus       156 ~~~~~~---~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~~g~~p~~~~~~--~~-----~~~~~~~~  225 (267)
T cd05066         156 LEDDPE---AAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWEMSN--QD-----VIKAIEEG  225 (267)
T ss_pred             cccccc---eeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhcCCCCCcccCCH--HH-----HHHHHhCC
Confidence            642211   0111112234568999999998899999999999987776432 2222211111  11     11111100


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ..  .+.....+..+.+++.+|++.+|++||+|.++++.|+++
T Consensus       226 ~~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~~  266 (267)
T cd05066         226 YR--LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVSILDKL  266 (267)
T ss_pred             Cc--CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHHHHHhh
Confidence            00  000001112233477899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.96  E-value=1.7e-29  Score=279.07  Aligned_cols=173  Identities=25%  Similarity=0.334  Sum_probs=134.1

Q ss_pred             ceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      .++||+|+||+||+|+...                ....+.+|++++++++||||+++++++...   .....++||||+
T Consensus         6 g~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~---~~~~~~lv~e~~   82 (317)
T cd07867           6 GCKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFLSH---SDRKVWLLFDYA   82 (317)
T ss_pred             ceEeccCCCeeEEEEEecCCCccceEEEEEecCCCCcHHHHHHHHHHHhCCCCCeeeEEEEEecc---CCCeEEEEEeee
Confidence            3689999999999997531                124678999999999999999999988653   234579999999


Q ss_pred             CCCCcccccccc-----------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee----cCCCceEEecccc
Q 002376          730 SNGSLGDWIHGE-----------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDFGL  788 (929)
Q Consensus       730 ~~gsL~~~l~~~-----------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl----~~~~~~ki~DfGl  788 (929)
                      + ++|.+++...                 +.++.|++.||+|||+.   +|+||||||+||++    ++++.+||+|||+
T Consensus        83 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~  158 (317)
T cd07867          83 E-HDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIADMGF  158 (317)
T ss_pred             C-CcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcCCCCHHHEEEccCCCCCCcEEEeeccc
Confidence            6 4776665311                 13356899999999998   99999999999999    5677999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ++.......   .........||+.|+|||++.+. .++.++||||+|++++++.+...++
T Consensus       159 a~~~~~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f  216 (317)
T cd07867         159 ARLFNSPLK---PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  216 (317)
T ss_pred             eeccCCCcc---cccccCcceecccccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCc
Confidence            986532211   11122345789999999998764 5899999999999888876655443

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.1e-29  Score=271.49  Aligned_cols=227  Identities=24%  Similarity=0.322  Sum_probs=167.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      ++|+..+.||+|+||.||+|...+             ..+++.+|+.++++++||||+++++++...     ...++|||
T Consensus         6 ~~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~~v~e   80 (256)
T cd05039           6 KELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQG-----NPLYIVTE   80 (256)
T ss_pred             hhccceeeeecCCCceEEEEEecCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcceeeeEEEEcCC-----CCeEEEEE
Confidence            467888999999999999887652             245788999999999999999999998653     33799999


Q ss_pred             ecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          728 FLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |+++++|.++++...          .++.|++.|++|||+.   +++||||||+||++++++.+||+|||.++...... 
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~-  156 (256)
T cd05039          81 YMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEK---NFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQ-  156 (256)
T ss_pred             ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CccchhcccceEEEeCCCCEEEccccccccccccc-
Confidence            999999999986432          2357899999999998   99999999999999999999999999998653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                              ....++..|+|||++.++.++.++||||+|++++++.. ...++...+.  .+     +..........  .
T Consensus       157 --------~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~-----~~~~~~~~~~~--~  219 (256)
T cd05039         157 --------DSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KD-----VVPHVEKGYRM--E  219 (256)
T ss_pred             --------ccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH--HH-----HHHHHhcCCCC--C
Confidence                    11234678999999998899999999999987766532 2222111111  11     11111000000  0


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .+...+..+.+++.+|++.+|++||+++|++++|+.+
T Consensus       220 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~~  256 (256)
T cd05039         220 APEGCPPEVYKVMKDCWELDPAKRPTFKQLREQLALI  256 (256)
T ss_pred             CccCCCHHHHHHHHHHhccChhhCcCHHHHHHHHhcC
Confidence            0011112233377799999999999999999999763

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.96  E-value=1.1e-29  Score=273.28  Aligned_cols=229  Identities=21%  Similarity=0.261  Sum_probs=164.6

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+|+..                ...+.+.+|+.++++++||||+++++++...     ...+
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~-----~~~~   82 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSR-----EKLW   82 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeC-----CEEE
Confidence            347888999999999999998753                1234577899999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++|+|.++++...        .++.|++.|++|||+.   +|+|||+||+||++++++.+||+|||+++.+...
T Consensus        83 iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~  159 (267)
T cd06646          83 ICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSK---GKMHRDIKGANILLTDNGDVKLADFGVAAKITAT  159 (267)
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCCEEECcCccceeeccc
Confidence            9999999999999886332        2367899999999998   9999999999999999999999999999865321


Q ss_pred             cCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHHHHhhccc
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPELRQLMTSN  870 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  870 (929)
                      .      .......|++.|+|||++.   ...++.++||||+|++++++.....++.....  ...........   ...
T Consensus       160 ~------~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~p~~~~~~~~~~~~~~~~~~~---~~~  230 (267)
T cd06646         160 I------AKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMSKSNFQ---PPK  230 (267)
T ss_pred             c------cccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCCCccccchhhhheeeecCCCC---CCC
Confidence            1      1122346889999999874   34578899999999887776544333221111  00000000000   000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ....    ......+.+++.+||+.+|++||+++++++.
T Consensus       231 ~~~~----~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  265 (267)
T cd06646         231 LKDK----TKWSSTFHNFVKISLTKNPKKRPTAERLLTH  265 (267)
T ss_pred             Cccc----cccCHHHHHHHHHHhhCChhhCcCHHHHhcC
Confidence            0000    0112233347779999999999999999864

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=1.8e-29  Score=273.85  Aligned_cols=241  Identities=21%  Similarity=0.275  Sum_probs=174.3

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++.++..+.+.|+..+.||+|+||.||+|....               ...++..|+.+++++ +||||+++++++...
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            4677777888999999999999999999987641               234678899999998 699999999998653


Q ss_pred             CC-CCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          715 DS-KNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       715 ~~-~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                      .. ......++||||+++|+|.+++...+          .+..|++.|++|||+.   +|+|||+||+||++++++.+||
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~dl~~~nili~~~~~~~l  162 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAH---KVIHRDIKGQNVLLTENAEVKL  162 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEE
Confidence            32 12356899999999999999886422          2246899999999998   9999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV  858 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~  858 (929)
                      +|||+++.....      ........|++.|+|||++.     +..++.++||||+|++++++.....++..... ....
T Consensus       163 ~dfg~~~~~~~~------~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~~-~~~~  235 (282)
T cd06636         163 VDFGVSAQLDRT------VGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHP-MRAL  235 (282)
T ss_pred             eeCcchhhhhcc------ccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCccccCH-Hhhh
Confidence            999998755321      11123356899999999876     34688999999999887776555444322211 1111


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      . . ....    .............+. +++.+||+.||++||++.|+++
T Consensus       236 ~-~-~~~~----~~~~~~~~~~~~~~~-~li~~cl~~~p~~Rp~~~ell~  278 (282)
T cd06636         236 F-L-IPRN----PPPKLKSKKWSKKFI-DFIEGCLVKNYLSRPSTEQLLK  278 (282)
T ss_pred             h-h-HhhC----CCCCCcccccCHHHH-HHHHHHhCCChhhCcCHHHHhc
Confidence            0 0 0000    000000001112233 3777999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=1.2e-29  Score=277.25  Aligned_cols=227  Identities=23%  Similarity=0.254  Sum_probs=167.9

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .+|+..+.||+|+||.||+|...                ...+.+.+|+.+++.++||||+++++++...     ...++
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~-----~~~~l   94 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-----DELWV   94 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeC-----CEEEE
Confidence            47888899999999999998643                1245788999999999999999999988542     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++|+|.++++...       .++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||+++...... 
T Consensus        95 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~-  170 (296)
T cd06654          95 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-  170 (296)
T ss_pred             eecccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEECccccchhccccc-
Confidence            999999999999886432       3356899999999998   99999999999999999999999999988653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......|++.|+|||++.+..++.++||||+|++++++..+..++..... ..     ........ .......
T Consensus       171 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~~~~-~~-----~~~~~~~~-~~~~~~~  238 (296)
T cd06654         171 -----SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP-LR-----ALYLIATN-GTPELQN  238 (296)
T ss_pred             -----cccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCCCCH-HH-----hHHHHhcC-CCCCCCC
Confidence                 111234688999999999988899999999999887776554433321110 00     00000000 0000111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+.+...+.+++.+||..+|++||++.|+++
T Consensus       239 ~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~  269 (296)
T cd06654         239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (296)
T ss_pred             ccccCHHHHHHHHHHCcCCcccCcCHHHHhh
Confidence            1223333445888999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=1.1e-29  Score=272.52  Aligned_cols=225  Identities=21%  Similarity=0.266  Sum_probs=172.1

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ..|+..+.||+||.++||++...                 ....-|.+|+..|.+++ |.+||++++|-..     .+++
T Consensus       361 ~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~-----d~~l  435 (677)
T KOG0596|consen  361 REYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVT-----DGYL  435 (677)
T ss_pred             chhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeecc-----CceE
Confidence            35777889999999999998765                 22456889999999995 9999999999753     4579


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ||||||- .-+|.++|++..         .+..|++.|+.++|.+   +|||.||||.|+|+-. |.+||.|||.|..+.
T Consensus       436 YmvmE~G-d~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~---gIVHSDLKPANFLlVk-G~LKLIDFGIA~aI~  510 (677)
T KOG0596|consen  436 YMVMECG-DIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQH---GIVHSDLKPANFLLVK-GRLKLIDFGIANAIQ  510 (677)
T ss_pred             EEEeecc-cccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHh---ceeecCCCcccEEEEe-eeEEeeeechhcccC
Confidence            9999986 468999887543         2356899999999998   9999999999999974 689999999999875


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-----------CCCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhcc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-----------RPSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVL  859 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~  859 (929)
                      .+..+    .....-+||+.||+||.+...           +++.++||||+||++|+|....-+++.++.   ++..+.
T Consensus       511 ~DTTs----I~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~  586 (677)
T KOG0596|consen  511 PDTTS----IVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAIT  586 (677)
T ss_pred             ccccc----eeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhc
Confidence            43222    122345899999999987532           367999999999999988777777777764   344555


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      |+...-.++.-...        .+++. +|..|+++||++||+..|+++
T Consensus       587 ~P~~~Iefp~~~~~--------~~li~-~mK~CL~rdPkkR~si~eLLq  626 (677)
T KOG0596|consen  587 DPNHEIEFPDIPEN--------DELID-VMKCCLARDPKKRWSIPELLQ  626 (677)
T ss_pred             CCCccccccCCCCc--------hHHHH-HHHHHHhcCcccCCCcHHHhc
Confidence            55332211111111        11444 777999999999999999875

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=2e-29  Score=272.38  Aligned_cols=230  Identities=20%  Similarity=0.278  Sum_probs=166.8

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||.||+|+...                      ..+.|.+|++++++++||||+++++++...    
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----   80 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREA----   80 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCC----
Confidence            467888999999999999987420                      135688999999999999999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc-----------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCce
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER-----------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA  781 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~-----------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~  781 (929)
                       ...++||||+++|+|.++++..+                 .+..|++.||+|||+.   +|+||||||+||++++++.+
T Consensus        81 -~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~  156 (275)
T cd05046          81 -EPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHRDLAARNCLVSSQREV  156 (275)
T ss_pred             -CcceEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccCcCccceEEEeCCCcE
Confidence             34799999999999999986433                 1246899999999998   89999999999999999999


Q ss_pred             EEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccC
Q 002376          782 KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLD  860 (929)
Q Consensus       782 ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~  860 (929)
                      |++|||+++.....     .........++..|+|||.+.+..++.++||||+|++++++.. ...++....       +
T Consensus       157 ~l~~~~~~~~~~~~-----~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~-------~  224 (275)
T cd05046         157 KVSLLSLSKDVYNS-----EYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS-------D  224 (275)
T ss_pred             EEcccccccccCcc-----cccccCCceeEEeecChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCccccc-------h
Confidence            99999998754211     1111223356788999999988889999999999987776433 222222111       1


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      ............. .......+..+.+++.+||+.+|++||++.|++++|+
T Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~l~  274 (275)
T cd05046         225 EEVLNRLQAGKLE-LPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSALG  274 (275)
T ss_pred             HHHHHHHHcCCcC-CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHHhc
Confidence            1111111000000 0001112233444788999999999999999999885

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.9e-29  Score=273.28  Aligned_cols=234  Identities=21%  Similarity=0.302  Sum_probs=169.6

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||.||+|...                     ...+++.+|+.++++++||||++++++|..      
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~------   80 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS------   80 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec------
Confidence            46777899999999999998642                     113568899999999999999999999864      


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.++++...         ..+.|++.|++|||+.   +++||||||+||++++++.+||+|||.++
T Consensus        81 ~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~di~p~nil~~~~~~~kL~dfg~~~  157 (279)
T cd05057          81 SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEK---RLVHRDLAARNVLVKTPQHVKITDFGLAK  157 (279)
T ss_pred             CceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecccCcceEEEcCCCeEEECCCcccc
Confidence            23799999999999999886432         2357899999999997   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ........    .......++..|+|||.+....++.++||||+|++++++.. ...++...+  ..     .+......
T Consensus       158 ~~~~~~~~----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~--~~-----~~~~~~~~  226 (279)
T cd05057         158 LLDVDEKE----YHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMTFGAKPYEGIP--AV-----EIPDLLEK  226 (279)
T ss_pred             cccCcccc----eecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhcCCCCCCCCCC--HH-----HHHHHHhC
Confidence            76422110    11111234678999999988899999999999987776543 222221111  11     11111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ...... ...+...+. +++.+||..+|++||++.++++.|+++.+.
T Consensus       227 ~~~~~~-~~~~~~~~~-~~~~~~l~~~p~~Rp~~~~l~~~l~~~~~~  271 (279)
T cd05057         227 GERLPQ-PPICTIDVY-MVLVKCWMIDAESRPTFKELINEFSKMARD  271 (279)
T ss_pred             CCCCCC-CCCCCHHHH-HHHHHHcCCChhhCCCHHHHHHHHHHHHhC
Confidence            100000 001112233 378899999999999999999999998664

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.96  E-value=2.1e-29  Score=274.86  Aligned_cols=242  Identities=17%  Similarity=0.252  Sum_probs=161.2

Q ss_pred             CCCCCceeecccCceeEEeccccCc---------------HHH---------------HHHHHHHHHccCCccccceeee
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS---------------WKS---------------FIAECETLRNVRHRNLVKLITS  710 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~---------------~~~E~~~l~~l~Hpniv~l~~~  710 (929)
                      ++|+..++||+|+||+||+|.....               .+.               ...+...+..++|+++++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            5789999999999999999875422               001               1122334556789999999997


Q ss_pred             cccCCCCCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       711 ~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      +..... ...+.++++|++. .++.+.+...        ..++.|++.||+|||+.   +|+||||||+|||+++++.+|
T Consensus        92 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iiHrDiKp~Nill~~~~~~~  166 (294)
T PHA02882         92 GSFKRC-RMYYRFILLEKLV-ENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEH---GISHGDIKPENIMVDGNNRGY  166 (294)
T ss_pred             eeEecC-CceEEEEEEehhc-cCHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCcEE
Confidence            654332 2334578888774 3554444321        13578999999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhcc
Q 002376          783 VGDFGLARFLLERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVL  859 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~  859 (929)
                      |+|||+|+.+........ .........||+.|+|||+..+..++.++||||+|++++++.....++.....  ......
T Consensus       167 l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~~~~~~~  246 (294)
T PHA02882        167 IIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNGNLIHAA  246 (294)
T ss_pred             EEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccchHHHHHh
Confidence            999999987632211110 11112334799999999999999999999999999877776555555443321  111111


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      .......+....   .....+. +.+.+++..|+..+|++||++.++.+.++
T Consensus       247 ~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~rp~~~~l~~~~~  294 (294)
T PHA02882        247 KCDFIKRLHEGK---IKIKNAN-KFIYDFIECVTKLSYEEKPDYDALIKIFD  294 (294)
T ss_pred             HHHHHHHhhhhh---hccCCCC-HHHHHHHHHHHhCCCCCCCCHHHHHHhhC
Confidence            111111111111   1111222 22334777999999999999999998763

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.96  E-value=4.3e-29  Score=270.60  Aligned_cols=231  Identities=23%  Similarity=0.335  Sum_probs=164.6

Q ss_pred             CCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..++||+|+||.||++...                     ...+.|.+|++++++++||||+++++++....     
T Consensus         6 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   80 (280)
T cd05092           6 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGR-----   80 (280)
T ss_pred             hceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCC-----
Confidence            5667789999999999987521                     12357889999999999999999999985433     


Q ss_pred             eEEEEEEecCCCCccccccccc-----------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC
Q 002376          721 FLALVYEFLSNGSLGDWIHGER-----------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE  777 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~  777 (929)
                      ..++||||+++|+|.++++...                       ..+.|++.|++|||+.   +++||||||+||++++
T Consensus        81 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~nil~~~  157 (280)
T cd05092          81 PLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHRDLATRNCLVGQ  157 (280)
T ss_pred             ceEEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---CeecccccHhhEEEcC
Confidence            3799999999999999886321                       1246899999999998   9999999999999999


Q ss_pred             CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          778 EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       778 ~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      ++.+||+|||+++.......    ........+++.|+|||++.+..++.++||||+|++++++..    .+..|..  +
T Consensus       158 ~~~~kL~dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~----~g~~p~~--~  227 (280)
T cd05092         158 GLVVKIGDFGMSRDIYSTDY----YRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFT----YGKQPWY--Q  227 (280)
T ss_pred             CCCEEECCCCceeEcCCCce----eecCCCccccccccCHHHhccCCcCchhhHHHHHHHHHHHHc----CCCCCCc--c
Confidence            99999999999975532110    011122345788999999999999999999999987777533    1222210  0


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .-+.............  ..+...+.-+++++.+||+.||++||+++||.+.|++
T Consensus       228 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~~l~~  280 (280)
T cd05092         228 LSNTEAIECITQGREL--ERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHSRLQA  280 (280)
T ss_pred             CCHHHHHHHHHcCccC--CCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHhC
Confidence            0001111100000000  0001112223347789999999999999999998863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.96  E-value=6.3e-29  Score=269.35  Aligned_cols=237  Identities=18%  Similarity=0.243  Sum_probs=172.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      .++|+..+.||+|+||.||+|....                     ..+.+.+|+.++++++||||+++++++....   
T Consensus         5 ~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~---   81 (280)
T cd05043           5 RDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDG---   81 (280)
T ss_pred             hhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCC---
Confidence            4578888999999999999987542                     1345788999999999999999999986532   


Q ss_pred             cceEEEEEEecCCCCccccccccc----------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER----------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~----------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                       ...++++||+++|+|.+++...+                .++.+++.||+|||+.   +++||||||+||++++++.+|
T Consensus        82 -~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~di~p~nil~~~~~~~k  157 (280)
T cd05043          82 -EPPFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHKDIAARNCVIDEELQVK  157 (280)
T ss_pred             -CCCEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCHhhEEEcCCCcEE
Confidence             34799999999999999886421                2356899999999987   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccCh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDP  861 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~  861 (929)
                      |+|||+++.+......    .......++..|+|||++.+..++.++||||+|++++++.. ...++.....       .
T Consensus       158 l~d~g~~~~~~~~~~~----~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-------~  226 (280)
T cd05043         158 ITDNALSRDLFPMDYH----CLGDNENRPVKWMALESLVNKEYSSASDVWSFGVLLWELMTLGQTPYVEIDP-------F  226 (280)
T ss_pred             ECCCCCcccccCCceE----EeCCCCCcchhccCHHHHhcCCCCchhhHHHhHHHHHHHhcCCCCCcCcCCH-------H
Confidence            9999999865322110    01122346778999999998899999999999987776543 3222221111       1


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .+............ ...+...+ .+++.+||+.||++|||+.|+++.|+++..+
T Consensus       227 ~~~~~~~~~~~~~~-~~~~~~~~-~~li~~~l~~~p~~Rps~~~~~~~l~~~~~~  279 (280)
T cd05043         227 EMAAYLKDGYRLAQ-PINCPDEL-FAVMACCWALDPEERPSFSQLVQCLTDFHAQ  279 (280)
T ss_pred             HHHHHHHcCCCCCC-CCcCCHHH-HHHHHHHcCCChhhCCCHHHHHHHHHHHHhc
Confidence            11111111100000 00111122 3377799999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.96  E-value=1.5e-29  Score=274.77  Aligned_cols=224  Identities=23%  Similarity=0.299  Sum_probs=162.8

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      |+..+.||+|+||.||++....                   ..+.+.+|+.++++++|++++++++++.+.     ...+
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~-----~~~~   76 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETK-----DALC   76 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecC-----CEEE
Confidence            6677899999999999876641                   123467899999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++|+|.+++....          .++.|++.|++|||+.   +|+||||||+||++++++.++|+|||++....
T Consensus        77 lv~e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~  153 (285)
T cd05630          77 LVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVP  153 (285)
T ss_pred             EEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHEEECCCCCEEEeeccceeecC
Confidence            9999999999998875321          2357899999999987   99999999999999999999999999987543


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchh-hhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENV-LQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  872 (929)
                      ..       .......||..|||||++.+..++.++||||+|++++++..+..++....... .+........ ....  
T Consensus       154 ~~-------~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~~~~~~~~~~~~~~~~-~~~~--  223 (285)
T cd05630         154 EG-------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKE-VQEE--  223 (285)
T ss_pred             CC-------ccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCccchHHHHHhhhhh-hhhh--
Confidence            11       11123478999999999999999999999999988777655544443221100 0000000000 0000  


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                          .......-+.+++.+||+.||++|||     ++|+++
T Consensus       224 ----~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~  260 (285)
T cd05630         224 ----YSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKE  260 (285)
T ss_pred             ----cCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHc
Confidence                00011122234777999999999999     888876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=1.5e-29  Score=287.38  Aligned_cols=175  Identities=22%  Similarity=0.267  Sum_probs=141.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .+|...+.||+|+||.||++...+             ..+.+.+|++++++++|||||++++++..     ....++|||
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~-----~~~~~lv~e  166 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGGKTPGREIDILKTISHRAIINLIHAYRW-----KSTVCMVMP  166 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEeccccccHHHHHHHHHhcCCCCccceeeeEee-----CCEEEEEeh
Confidence            478889999999999999875431             12356789999999999999999998853     345899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      |+. ++|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+....   
T Consensus       167 ~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~---givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~---  239 (392)
T PHA03207        167 KYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGR---GIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHP---  239 (392)
T ss_pred             hcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEccCccccccCccc---
Confidence            995 68888875322        3467899999999998   99999999999999999999999999998653221   


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                       .........||+.|+|||++.+..++.++||||+|+++|++.+...++
T Consensus       240 -~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf  287 (392)
T PHA03207        240 -DTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTL  287 (392)
T ss_pred             -ccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence             111123457999999999999999999999999999888876554443

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=2.2e-29  Score=271.11  Aligned_cols=225  Identities=25%  Similarity=0.333  Sum_probs=161.8

Q ss_pred             eeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          667 NLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +.||+|+||.||+|+..                       .....|.+|+++++.++||||++++++|...+     ..+
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~   75 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNE-----PQY   75 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCC-----CeE
Confidence            36899999999988753                       12346788999999999999999999985433     479


Q ss_pred             EEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-----ceEE
Q 002376          724 LVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-----TAKV  783 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-----~~ki  783 (929)
                      +||||+++|+|.++++...               .++.+++.|++|||+.   +++||||||+||+++.++     .+|+
T Consensus        76 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~~~~~l  152 (269)
T cd05044          76 IIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHRDLAARNCLVSEKGYDADRVVKI  152 (269)
T ss_pred             EEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccCCCChheEEEecCCCCCCcceEE
Confidence            9999999999999986321               1356899999999987   899999999999999877     8999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChH
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPE  862 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~  862 (929)
                      +|||+++.........    ......++..|+|||++.++.++.++||||+|++++++.. ...++.....       ..
T Consensus       153 ~dfg~~~~~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~~-------~~  221 (269)
T cd05044         153 GDFGLARDIYKSDYYR----KEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALNN-------QE  221 (269)
T ss_pred             CCcccccccccccccc----cCcccCCCccccCHHHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccCH-------HH
Confidence            9999998653211100    1112245788999999999999999999999988777543 2222211111       11


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .........  ........+..+.+++.+||+.+|++||+++++++.|++
T Consensus       222 ~~~~~~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~l~~  269 (269)
T cd05044         222 VLQHVTAGG--RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQEILQN  269 (269)
T ss_pred             HHHHHhcCC--ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHHHHhC
Confidence            111110000  001111223334458889999999999999999999874

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=3.1e-29  Score=280.08  Aligned_cols=176  Identities=23%  Similarity=0.354  Sum_probs=141.3

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KN  718 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~  718 (929)
                      +..++|...+.||+|+||.||+|....                  ..+.+.+|++++++++||||+++++++..... ..
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            456789999999999999999986541                  12457789999999999999999998854321 12


Q ss_pred             cceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ....|+++|++ +++|.++++..       +.++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSA---GIIHRDLKPSNVAVNEDCELRILDFGLARQ  167 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCChhhEEECCCCCEEEcCCcccee
Confidence            23479999998 78898877532       23467999999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ...         .....+||+.|+|||++.+ ..++.++||||+|++++++.....
T Consensus       168 ~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~  214 (343)
T cd07878         168 ADD---------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKA  214 (343)
T ss_pred             cCC---------CcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCC
Confidence            421         1223478999999999877 468999999999988887655443

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.95  E-value=4.9e-29  Score=268.07  Aligned_cols=230  Identities=23%  Similarity=0.290  Sum_probs=166.2

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+|+..+.||+|+||.||++....                     ..+.+.+|+.++++++||||+++++++...   ..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~   78 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDR---AE   78 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcC---CC
Confidence            368888999999999999986531                     123577899999999999999999987542   22


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        79 ~~~~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~~l~p~nil~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          79 KTLTIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (266)
T ss_pred             CEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCCCccc
Confidence            45799999999999999886432        2467899999999987   899999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      +.....   .........|+.+|+|||++.+..++.++||||+|++++++.....++..... ..     .+......  
T Consensus       156 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~~-~~-----~~~~~~~~--  224 (266)
T cd06651         156 LQTICM---SGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEYEA-MA-----AIFKIATQ--  224 (266)
T ss_pred             cccccc---cCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCccccch-HH-----HHHHHhcC--
Confidence            532111   11112234689999999999998899999999999887776554433322211 00     01111000  


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...+..+..+.+.+++++ +||..+|++||+|+||++
T Consensus       225 ~~~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~  260 (266)
T cd06651         225 PTNPQLPSHISEHARDFL-GCIFVEARHRPSAEELLR  260 (266)
T ss_pred             CCCCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhc
Confidence            001111222334445455 788899999999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.95  E-value=2.1e-29  Score=273.77  Aligned_cols=224  Identities=25%  Similarity=0.272  Sum_probs=162.1

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      |+..+.||+|+||+||+++...                   ..+.+.+|++++++++|+||+++.+++...     ...+
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~-----~~~~   76 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETK-----DALC   76 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecC-----CEEE
Confidence            5667899999999999987641                   123467899999999999999999888543     3489


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        77 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~  153 (285)
T cd05632          77 LVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRE---NTVYRDLKPENILLDDYGHIRISDLGLAVKIP  153 (285)
T ss_pred             EEEEeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEECCCCCEEEecCCcceecC
Confidence            9999999999988875321          2367899999999998   99999999999999999999999999987542


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch-hhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN-VLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  872 (929)
                      ..       .......|+..|+|||++.+..++.++||||+|++++++.....++...... ..+.+.......   ...
T Consensus       154 ~~-------~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~~~~~~~~~~~~~~~~~~~~---~~~  223 (285)
T cd05632         154 EG-------ESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPFRGRKEKVKREEVDRRVLET---EEV  223 (285)
T ss_pred             CC-------CcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhhhcc---ccc
Confidence            11       1112347899999999999999999999999998877765544433322211 111111111110   001


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ..    ......+.+++.+|++.||++||+     ++|++.
T Consensus       224 ~~----~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~  260 (285)
T cd05632         224 YS----AKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKR  260 (285)
T ss_pred             cC----ccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHc
Confidence            11    111222334777999999999999     556654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.95  E-value=3.3e-29  Score=271.89  Aligned_cols=225  Identities=21%  Similarity=0.295  Sum_probs=160.3

Q ss_pred             CCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      |+..+.||+|+||.||+|....                ..+.+.+|+++++.++||||+++++++...     ...++||
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~-----~~~~~v~   81 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE-----NNLWILI   81 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeC-----CEEEEEE
Confidence            4556789999999999987641                235688899999999999999999998543     3489999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....  
T Consensus        82 e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~--  156 (282)
T cd06643          82 EFCAGGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHEN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT--  156 (282)
T ss_pred             EecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEccCCCEEEcccccccccccc--
Confidence            9999999988765311         2357899999999998   9999999999999999999999999998754211  


Q ss_pred             CCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                          ........|+..|+|||++.     +..++.++||||+|++++++.....++.....  .+.+...... ......
T Consensus       157 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~~~~~~~-~~~~~~  229 (282)
T cd06643         157 ----IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIEPPHHELNP--MRVLLKIAKS-EPPTLA  229 (282)
T ss_pred             ----ccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCCCCccccCH--HHHHHHHhhc-CCCCCC
Confidence                11123346899999999974     44578899999999887776544333222111  0000000000 000000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..    .....-+.+++.+||+.||++||++.++++
T Consensus       230 ~~----~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  261 (282)
T cd06643         230 QP----SRWSSEFKDFLKKCLEKNVDARWTTTQLLQ  261 (282)
T ss_pred             Cc----cccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            01    111222334777999999999999999874

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.95  E-value=7.2e-29  Score=265.78  Aligned_cols=229  Identities=22%  Similarity=0.308  Sum_probs=166.6

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||++...              ...++|.+|+.++++++|||++++++++..      ...++||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~------~~~~lv~   79 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSE------EPIYIVT   79 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCceEEEEeEECC------CCcEEEE
Confidence            46778899999999999988654              124678999999999999999999998732      2268999


Q ss_pred             EecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++++|.++++..          ..++.+++.|++|||+.   +|+||||||+||++++++.+||+|||.++.+....
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~  156 (260)
T cd05070          80 EYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERM---NYIHRDLRSANILVGDGLVCKIADFGLARLIEDNE  156 (260)
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEEeCCceEEeCCceeeeeccCcc
Confidence            999999999988642          13356899999999998   89999999999999999999999999998653211


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .     .......++..|+|||++.+..++.++||||+|++++++.. ...++....  ..+     .........  ..
T Consensus       157 ~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~~--~~~-----~~~~~~~~~--~~  222 (260)
T cd05070         157 Y-----TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMN--NRE-----VLEQVERGY--RM  222 (260)
T ss_pred             c-----ccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCCC--HHH-----HHHHHHcCC--CC
Confidence            0     01112245678999999988899999999999987776543 222221111  111     111110000  00


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      +.+...+..+.+++.+|++.+|++|||++++.+.|++
T Consensus       223 ~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~~l~~  259 (260)
T cd05070         223 PCPQDCPISLHELMLQCWKKDPEERPTFEYLQSFLED  259 (260)
T ss_pred             CCCCcCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            0111122233447889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.95  E-value=3.2e-29  Score=278.20  Aligned_cols=175  Identities=22%  Similarity=0.237  Sum_probs=142.4

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+++...                   ..+.+.+|+.++..++||+|+++++++.+     ...
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~-----~~~   75 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQD-----ENY   75 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEc-----CCE
Confidence            478889999999999999987651                   12346788999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .|+||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        76 ~~lv~Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~---~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~  152 (331)
T cd05624          76 LYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQL---HYVHRDIKPDNVLLDMNGHIRLADFGSCLKM  152 (331)
T ss_pred             EEEEEeCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCchHHEEEcCCCCEEEEeccceeec
Confidence            899999999999999986421         2356899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ....     ........||++|||||++.+     +.++.++||||+|+++|++..+..++
T Consensus       153 ~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf  208 (331)
T cd05624         153 NQDG-----TVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPF  208 (331)
T ss_pred             cCCC-----ceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCc
Confidence            3211     111223579999999999876     46889999999999998876655444

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=1.9e-29  Score=294.16  Aligned_cols=172  Identities=18%  Similarity=0.216  Sum_probs=138.5

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------------------------CcHHHHHHHHHHHHccCCccc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------------------------GSWKSFIAECETLRNVRHRNL  704 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------------------~~~~~~~~E~~~l~~l~Hpni  704 (929)
                      ..++|+..+.||+|+||+||++..+                                  ...+.+.+|+.++++++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3568999999999999999986431                                  012357789999999999999


Q ss_pred             cceeeecccCCCCCcceEEEEEEecCCCCccccccc-------------cccccccHHHHHHHhhhCCCCCEEecCCCCC
Q 002376          705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-------------ERKNELDITSALDYLHNDCEVPVVHSDLKPG  771 (929)
Q Consensus       705 v~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~-------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~  771 (929)
                      |++++++...+     ..|+|+|++. +++.+++..             .+.++.|++.||+|||+.   +||||||||+
T Consensus       226 v~l~~~~~~~~-----~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHrDLKP~  296 (501)
T PHA03210        226 LKIEEILRSEA-----NTYMITQKYD-FDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHRDIKLE  296 (501)
T ss_pred             CcEeEEEEECC-----eeEEEEeccc-cCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHH
Confidence            99999985433     4799999985 567665532             123567999999999998   9999999999


Q ss_pred             CeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 002376          772 NILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       772 NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      |||++.++.+||+|||+++.+....     .......+||..|+|||++.+..++.++||||+|++++++...
T Consensus       297 NILl~~~~~vkL~DFGla~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~  364 (501)
T PHA03210        297 NIFLNCDGKIVLGDFGTAMPFEKER-----EAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSH  364 (501)
T ss_pred             HEEECCCCCEEEEeCCCceecCccc-----ccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHC
Confidence            9999999999999999998663211     1112335799999999999999999999999999988886543

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.95  E-value=2.9e-29  Score=269.59  Aligned_cols=232  Identities=21%  Similarity=0.282  Sum_probs=165.9

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||.||+|....                     ..+.+.+|++++++++|+||+++++++.+.     .
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~   75 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDD-----N   75 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecC-----C
Confidence            46778999999999999976530                     124578899999999999999999998543     4


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++|+|.+++....        .++.|++.|++|||+.   +|+|+||||+||++++++.+||+|||+++..
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  152 (265)
T cd06631          76 TISIFMEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNN---CVVHRDIKGNNVMLMPNGIIKLIDFGCARRL  152 (265)
T ss_pred             eEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHhEEECCCCeEEeccchhhHhh
Confidence            5899999999999999986432        2357899999999998   8999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      .................|+..|+|||++.+..++.++||||+|++++++.....++..... .....  ....   .. .
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~-~~~~~--~~~~---~~-~  225 (265)
T cd06631         153 AWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR-LAAMF--YIGA---HR-G  225 (265)
T ss_pred             hhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCCh-HHHHH--Hhhh---cc-C
Confidence            3211111111122345689999999999998899999999999877776554443322211 10000  0000   00 0


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ............+.+++.+||+.+|++||++.|++.
T Consensus       226 ~~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~  261 (265)
T cd06631         226 LMPRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLR  261 (265)
T ss_pred             CCCCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence            000011112222334777999999999999999874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.95  E-value=1.2e-28  Score=263.34  Aligned_cols=224  Identities=23%  Similarity=0.289  Sum_probs=166.3

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++...                  ...+++.+|++++++++|||++++++++...     ...+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   75 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDK-----GKLN   75 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccC-----CEEE
Confidence            4677899999999999998654                  1245788999999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++++|.++++...          .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++.+.
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~dl~~~nili~~~~~~~l~df~~~~~~~  152 (256)
T cd08529          76 IVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSK---KILHRDIKSLNLFLDAYDNVKIGDLGVAKLLS  152 (256)
T ss_pred             EEEEeCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEeCCCCEEEcccccceecc
Confidence            9999999999999986431          2356899999999997   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      ........|++.|+|||+..+..++.++||||+|++++++.....++.....  .+...........     
T Consensus       153 ~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~-----  219 (256)
T cd08529         153 DN------TNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPFDANNQ--GALILKIIRGVFP-----  219 (256)
T ss_pred             Cc------cchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHcCCCC-----
Confidence            21      1112234688999999999999999999999999877776554433322211  1111111111000     


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ........-+.+++.+||+.+|++||+|.++++
T Consensus       220 --~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  252 (256)
T cd08529         220 --PVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLR  252 (256)
T ss_pred             --CCccccCHHHHHHHHHHccCCcccCcCHHHHhh
Confidence              011111122333777999999999999999976

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=6.4e-29  Score=275.76  Aligned_cols=175  Identities=25%  Similarity=0.278  Sum_probs=141.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+++...                   ..+.|.+|+.++..++||||+++++++.+     ...
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~   75 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQD-----ENN   75 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEec-----CCe
Confidence            478889999999999999887642                   12347789999999999999999999854     345


Q ss_pred             EEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .|+||||+++|+|.+++.+.         +.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~  152 (331)
T cd05597          76 LYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQL---GYVHRDIKPDNVLLDKNGHIRLADFGSCLRL  152 (331)
T ss_pred             EEEEEecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEECCCCHHHEEECCCCCEEEEECCceeec
Confidence            89999999999999988642         22357899999999998   9999999999999999999999999998765


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ....     .......+||+.|||||++..     ..++.++||||+|++++++..+..++
T Consensus       153 ~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf  208 (331)
T cd05597         153 LADG-----TVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPF  208 (331)
T ss_pred             CCCC-----CccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCC
Confidence            3211     111223469999999999863     45789999999999888876554443

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.95  E-value=3.5e-29  Score=268.15  Aligned_cols=230  Identities=22%  Similarity=0.299  Sum_probs=167.9

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..++||+|+||.||+|...              ...++|.+|+.++++++||||+++++++..      ...++|
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~~~~~v   78 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRLYAVVTQ------EPIYII   78 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcCeeeEEEEEcc------CCcEEE
Confidence            357888899999999999998764              234678999999999999999999998632      237999


Q ss_pred             EEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++|+|.++++...          .++.+++.||+|||+.   +++||||||+||++++++.++++|||+++.....
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~  155 (260)
T cd05067          79 TEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERK---NYIHRDLRAANILVSETLCCKIADFGLARLIEDN  155 (260)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHHhEEEcCCCCEEEccCcceeecCCC
Confidence            99999999999875321          2356899999999987   9999999999999999999999999999765321


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      ..     .......++..|+|||++.+..++.++||||+|++++++.. ...++....       ++..........  .
T Consensus       156 ~~-----~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~-------~~~~~~~~~~~~--~  221 (260)
T cd05067         156 EY-----TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGMT-------NPEVIQNLERGY--R  221 (260)
T ss_pred             Cc-----ccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCCC-------hHHHHHHHHcCC--C
Confidence            10     11122346778999999998899999999999987776543 222221111       111111111110  0


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .......+..+.+++.+|++.+|++||+++++...|++
T Consensus       222 ~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  259 (260)
T cd05067         222 MPRPDNCPEELYELMRLCWKEKPEERPTFEYLRSVLED  259 (260)
T ss_pred             CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHHHhhc
Confidence            00111112223347779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.95  E-value=5.6e-29  Score=275.22  Aligned_cols=218  Identities=24%  Similarity=0.282  Sum_probs=157.1

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +|+..+.||+|+||.||+++...                   ..+.+..|..+++.+. |++|+++++++.+.     ..
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~-----~~   75 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTV-----DR   75 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecC-----CE
Confidence            36778999999999999987641                   1234677888888886 56788888887442     34


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus        76 ~~lv~Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~  152 (323)
T cd05615          76 LYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRR---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEHM  152 (323)
T ss_pred             EEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEeccccccccC
Confidence            899999999999998876432        3467899999999998   99999999999999999999999999987532


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      ........||+.|||||++.+..++.++||||+|++++++.++..++.....  .+.... +.   ......
T Consensus       153 ~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~~~--~~~~~~-i~---~~~~~~  220 (323)
T cd05615         153 VD------GVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGEDE--DELFQS-IM---EHNVSY  220 (323)
T ss_pred             CC------CccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHH-HH---hCCCCC
Confidence            11      1112335699999999999999999999999999887776554444322211  111111 11   101000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .    ..+...+.+++.+|++.+|++|++.
T Consensus       221 p----~~~~~~~~~li~~~l~~~p~~R~~~  246 (323)
T cd05615         221 P----KSLSKEAVSICKGLMTKHPSKRLGC  246 (323)
T ss_pred             C----ccCCHHHHHHHHHHcccCHhhCCCC
Confidence            0    1112222337779999999999985

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.95  E-value=1e-29  Score=272.17  Aligned_cols=228  Identities=27%  Similarity=0.407  Sum_probs=163.2

Q ss_pred             CCCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|+||.||+++....                  .....+|+.++++++||||+++++++..     ....++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~-----~~~~~~   75 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQD-----DNYLYI   75 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEE-----SSEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccc-----cccccc
Confidence            56678999999999999887622                  1233459999999999999999999865     344899


Q ss_pred             EEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||||+++++|.+++....        .++.|+++||+|||+.   +|+||||||+||++++++.++|+|||.+.....  
T Consensus        76 v~~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~--  150 (260)
T PF00069_consen   76 VMEYCPGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSK---GIVHRDIKPENILLDENGEVKLIDFGSSVKLSE--  150 (260)
T ss_dssp             EEEEETTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHT---TEEESSBSGGGEEESTTSEEEESSGTTTEESTS--
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccc--
Confidence            999999999999887222        3367899999999998   999999999999999999999999999875411  


Q ss_pred             CCCCCccccceeccccccccccccC-CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGL-GERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  874 (929)
                          .........++..|+|||++. +..++.++||||+|++++++.....++..... ...+.+...............
T Consensus       151 ----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (260)
T PF00069_consen  151 ----NNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEESNSDDQLEIIEKILKRPLPSSSQQS  226 (260)
T ss_dssp             ----TTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTSSHHHHHHHHHHHHHTHHHHHTTSH
T ss_pred             ----cccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhccccccccccccc
Confidence                112233457899999999998 78899999999999776665443333322211 111111111111111010000


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...   ...+. +++.+|++.||++||++.++++
T Consensus       227 ~~~---~~~l~-~li~~~l~~~p~~R~~~~~l~~  256 (260)
T PF00069_consen  227 REK---SEELR-DLIKKMLSKDPEQRPSAEELLK  256 (260)
T ss_dssp             TTS---HHHHH-HHHHHHSSSSGGGSTTHHHHHT
T ss_pred             chh---HHHHH-HHHHHHccCChhHCcCHHHHhc
Confidence            000   12233 3777999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.95  E-value=4.4e-29  Score=297.58  Aligned_cols=233  Identities=23%  Similarity=0.270  Sum_probs=167.1

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ....++|.+.+.||+|+||.||+++...                  ....|..|+.++++++|||||+++++|...   .
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de---~   85 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNK---A   85 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEec---C
Confidence            3445689999999999999999987641                  235688999999999999999999988653   2


Q ss_pred             cceEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCC----CCEEecCCCCCCeeecC-----
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCE----VPVVHSDLKPGNILLDE-----  777 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~----~~iiHrDlk~~NILl~~-----  777 (929)
                      ...+|+||||+++|+|.+++...            ..++.||+.||+|||+...    .+||||||||+|||++.     
T Consensus        86 ~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~l  165 (1021)
T PTZ00266         86 NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHI  165 (1021)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccc
Confidence            34589999999999999988632            1336799999999998521    36999999999999964     


Q ss_pred             ------------CCceEEeccccccccccccCCCCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcch
Q 002376          778 ------------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       778 ------------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~~  843 (929)
                                  .+.+||+|||+++.+...       .......||+.|||||++.+  ..++.++||||+||++|++.+
T Consensus       166 g~i~~~~~n~ng~~iVKLsDFGlAr~l~~~-------s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLT  238 (1021)
T PTZ00266        166 GKITAQANNLNGRPIAKIGDFGLSKNIGIE-------SMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCS  238 (1021)
T ss_pred             ccccccccccCCCCceEEccCCcccccccc-------ccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHH
Confidence                        335899999999865321       11233579999999999864  458999999999988888765


Q ss_pred             hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          844 VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       844 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...++..... ..+++     ..+......  .... ...-+.+++.+||+.+|++||++.|++.
T Consensus       239 Gk~PF~~~~~-~~qli-----~~lk~~p~l--pi~~-~S~eL~dLI~~~L~~dPeeRPSa~QlL~  294 (1021)
T PTZ00266        239 GKTPFHKANN-FSQLI-----SELKRGPDL--PIKG-KSKELNILIKNLLNLSAKERPSALQCLG  294 (1021)
T ss_pred             CCCCCCcCCc-HHHHH-----HHHhcCCCC--CcCC-CCHHHHHHHHHHhcCChhHCcCHHHHhc
Confidence            5544432221 11111     111101100  0000 1112233777999999999999999984

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.95  E-value=1.5e-29  Score=278.45  Aligned_cols=173  Identities=26%  Similarity=0.339  Sum_probs=138.0

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...+.||+|+||.||+|+...                 ....+.+|++++++++||||+++++++...     ...+
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   80 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTD-----KSLT   80 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeC-----CeEE
Confidence            578889999999999999986541                 123677899999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++ +|.+++....         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~  156 (309)
T cd07872          81 LVFEYLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSV  156 (309)
T ss_pred             EEEeCCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECccccceecCC
Confidence            99999974 8887765322         2356899999999998   999999999999999999999999999975421


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ..      .......+|+.|+|||++.+ ..++.++||||+|++++++.++..++
T Consensus       157 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf  205 (309)
T cd07872         157 PT------KTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLF  205 (309)
T ss_pred             Cc------cccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            11      11123467899999998865 45899999999998888776554433

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.95  E-value=5.3e-29  Score=266.25  Aligned_cols=226  Identities=25%  Similarity=0.313  Sum_probs=163.3

Q ss_pred             eeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+|.+..                    ..+.|.+|++++++++||||+++++++..      ...++||
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------~~~~~v~   74 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT------HPLMMVT   74 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC------CeEEEEE
Confidence            468999999999986531                    23468899999999999999999999854      3479999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|+|.+++....          .++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++.+....
T Consensus        75 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~  151 (257)
T cd05040          75 ELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESK---RFIHRDLAARNILLASDDKVKIGDFGLMRALPQNE  151 (257)
T ss_pred             EecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhC---CccccccCcccEEEecCCEEEeccccccccccccc
Confidence            9999999999886532          1246899999999998   99999999999999999999999999998764321


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      ..   ........++..|+|||++.+..++.++||||+|++++++.. +..++.....  .+.... ....   ..  ..
T Consensus       152 ~~---~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~~--~~~~~~-~~~~---~~--~~  220 (257)
T cd05040         152 DH---YVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFTYGEEPWAGLSG--SQILKK-IDKE---GE--RL  220 (257)
T ss_pred             cc---eecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHhCCCCCCCCCCH--HHHHHH-HHhc---CC--cC
Confidence            11   111123457889999999998899999999999988777543 2222211111  111000 0000   00  00


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ...+..+.-+.+++.+|++.+|++||+++|+++.|.+
T Consensus       221 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~~l~~  257 (257)
T cd05040         221 ERPEACPQDIYNVMLQCWAHNPADRPTFAALREFLPE  257 (257)
T ss_pred             CCCccCCHHHHHHHHHHCCCCcccCCCHHHHHHHhcC
Confidence            0011122233347889999999999999999998753

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=2.4e-28  Score=263.33  Aligned_cols=233  Identities=21%  Similarity=0.259  Sum_probs=168.0

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|...+.||+|+||.||+|...                    ...+.|.+|+.++++++||||+++++++...      
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~------   79 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITEN------   79 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCC------
Confidence            45777899999999999998642                    1134688999999999999999999988532      


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++....         .++.+++.|++|||+.   +++||||||+||+++.++.+|++|||+++.
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~  156 (270)
T cd05056          80 PVWIVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESK---RFVHRDIAARNVLVSSPDCVKLGDFGLSRY  156 (270)
T ss_pred             CcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccChheEEEecCCCeEEccCceeee
Confidence            2689999999999999986422         2357899999999997   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ......     .......++..|+|||++.+..++.++||||+|++++++.. ...++.....  .+     ........
T Consensus       157 ~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~~--~~-----~~~~~~~~  224 (270)
T cd05056         157 LEDESY-----YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLGVKPFQGVKN--ND-----VIGRIENG  224 (270)
T ss_pred             cccccc-----eecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcCCCCCCCCCH--HH-----HHHHHHcC
Confidence            532210     11112235678999999988889999999999987776432 2222211111  01     11000000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .  +...+...+..+.+++.+|+..+|++|||+.|+++.|+++..+
T Consensus       225 ~--~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~l~~~~~~  268 (270)
T cd05056         225 E--RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQLSDILQE  268 (270)
T ss_pred             C--cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence            0  0001111122333477799999999999999999999997653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=6.4e-29  Score=266.17  Aligned_cols=230  Identities=21%  Similarity=0.316  Sum_probs=167.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..+.||+|+||.||++....              ..+.|.+|++++++++|+||+++++++..      ...++|
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~------~~~~~v   78 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK------EPIYII   78 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCCcceEEEEEcC------CCeEEE
Confidence            3578889999999999999886531              23578899999999999999999999854      237999


Q ss_pred             EEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++|+|.+++....          .++.+++.|++|||+.   +++||||||+||+++.++.+||+|||.++.....
T Consensus        79 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  155 (260)
T cd05073          79 TEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDN  155 (260)
T ss_pred             EEeCCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhC---CccccccCcceEEEcCCCcEEECCCcceeeccCC
Confidence            99999999999986421          2356899999999987   9999999999999999999999999999765321


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      ..     .......++..|+|||++.+..++.++||||+|++++++.+ ...++.....       ..+.........  
T Consensus       156 ~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~~~-------~~~~~~~~~~~~--  221 (260)
T cd05073         156 EY-----TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN-------PEVIRALERGYR--  221 (260)
T ss_pred             Cc-----ccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCCCH-------HHHHHHHhCCCC--
Confidence            10     11112345678999999998889999999999987776543 2222221111       111111110000  


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .+........+.+++.+|++.+|++||++.++.+.|++
T Consensus       222 ~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~~L~~  259 (260)
T cd05073         222 MPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDD  259 (260)
T ss_pred             CCCcccCCHHHHHHHHHHcccCcccCcCHHHHHHHHhc
Confidence            00001112223347779999999999999999999975

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.3e-29  Score=269.63  Aligned_cols=235  Identities=24%  Similarity=0.292  Sum_probs=170.0

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccCCC-CCcc
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++++|+..+.||+|+||.||+|....               ..++|.+|+.+++++ +||||+++++++..... ....
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            467899999999999999999988752               235788999999999 79999999999876443 2345


Q ss_pred             eEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ..++||||+++++|.++++..+            .++.|++.||+|||+.   +++||||+|+||++++++.+|++|||+
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~~l~p~ni~~~~~~~~~l~d~~~  159 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHEN---KVIHRDIKGQNILLTKNAEVKLVDFGV  159 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEEccCCeEEECCCcc
Confidence            6899999999999998875322            2356899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHH
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPEL  863 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  863 (929)
                      +......      ........|+..|+|||++..     ..++.++||||+|++++++.....++..... .     ..+
T Consensus       160 ~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~-----~~~  227 (275)
T cd06608         160 SAQLDST------LGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDMHP-M-----RAL  227 (275)
T ss_pred             ceecccc------hhhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCccccch-H-----HHH
Confidence            8764321      111223468999999998754     3478899999999887776554444322111 0     011


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..... ...............+++++.+|++.||++|||+.|+++
T Consensus       228 ~~~~~-~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~  271 (275)
T cd06608         228 FKIPR-NPPPTLKSPENWSKKFNDFISECLIKNYEQRPFMEELLE  271 (275)
T ss_pred             HHhhc-cCCCCCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhc
Confidence            11100 000001111112223334777999999999999999975

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=2.6e-29  Score=272.96  Aligned_cols=231  Identities=21%  Similarity=0.292  Sum_probs=167.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||+||++....                 ..+.+.+|+++++.++||||+++++++...     ...+
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~   79 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNE-----NNIC   79 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecC-----CEEE
Confidence            467778899999999999977541                 135788999999999999999999998643     4589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++|+|.++++...        .++.+++.|+.|||+.+  +++||||||+||++++++.++|+|||+++.....
T Consensus        80 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~  157 (284)
T cd06620          80 MCMEFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVH--RIMHRDIKPSNILVNSRGQIKLCDFGVSGELINS  157 (284)
T ss_pred             EEEecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhc--CeeccCCCHHHEEECCCCcEEEccCCcccchhhh
Confidence            9999999999998876432        33678999999999742  7999999999999999999999999998754211


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch------hhhccChHHHHhhcc
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN------VLQVLDPELRQLMTS  869 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~  869 (929)
                              ......|+..|+|||++.+..++.++||||+|++++++.....++......      ..++.+ ....... 
T Consensus       158 --------~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~-  227 (284)
T cd06620         158 --------IADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILD-LLQQIVQ-  227 (284)
T ss_pred             --------ccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHH-HHHHHhh-
Confidence                    112347899999999998889999999999998877765444443321110      000000 1111110 


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .........+ ....+.+++.+|++.||++||++.|+++.
T Consensus       228 ~~~~~~~~~~-~~~~~~~li~~~l~~dp~~Rpt~~e~~~~  266 (284)
T cd06620         228 EPPPRLPSSD-FPEDLRDFVDACLLKDPTERPTPQQLCAM  266 (284)
T ss_pred             ccCCCCCchh-cCHHHHHHHHHHhcCCcccCcCHHHHhcC
Confidence            1111111111 22223348889999999999999999976

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.95  E-value=1.8e-29  Score=252.62  Aligned_cols=171  Identities=29%  Similarity=0.387  Sum_probs=137.6

Q ss_pred             CCCCCceeecccCceeEEeccccCc----------------------HHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS----------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~----------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..|+....||+|.||.||+|..+.+                      .....+|+..++.++|||||.+..++..-    
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~----   99 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSH----   99 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhcc----
Confidence            4678889999999999999965411                      12456899999999999999999998753    


Q ss_pred             cceEEEEEEecCCCCccccccccc-------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC----Cce
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER-------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE----MTA  781 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~-------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~----~~~  781 (929)
                      ...+++++||++. +|.+.++-.+             .+..||+.|+.|||++   -|+|||+||+|||+..+    |.+
T Consensus       100 d~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~N---WvlHRDLKPaNIlvmgdgperG~V  175 (438)
T KOG0666|consen  100 DKKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSN---WVLHRDLKPANILVMGDGPERGRV  175 (438)
T ss_pred             CceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhh---heeeccCCcceEEEeccCCccCee
Confidence            3458999999986 8888876322             2246899999999998   79999999999999877    899


Q ss_pred             EEeccccccccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcc
Q 002376          782 KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFN  842 (929)
Q Consensus       782 ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~  842 (929)
                      ||+|||+||.+.....   .......++-|++|+|||++.|.+ |+.+.|||+.||+..|+.
T Consensus       176 KIaDlGlaR~~~~plk---pl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElL  234 (438)
T KOG0666|consen  176 KIADLGLARLFNNPLK---PLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELL  234 (438)
T ss_pred             EeecccHHHHhhcccc---ccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHH
Confidence            9999999998753221   122334567899999999999876 899999999998765543

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.6e-28  Score=261.86  Aligned_cols=230  Identities=24%  Similarity=0.297  Sum_probs=166.8

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||.||++....                     ..+.+.+|++++++++||||+++++++...     
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----   76 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDD-----   76 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccC-----
Confidence            578889999999999999886431                     124678899999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++||||+++++|.+++....        .++.+++.|++|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        77 ~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nilv~~~~~~~l~dfg~~~~  153 (263)
T cd06625          77 ETLSIFMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKR  153 (263)
T ss_pred             CeEEEEEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccccee
Confidence            35899999999999999886432        3467899999999998   999999999999999999999999999976


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ......   .........|+..|+|||++.+..++.++||||+|++++++.....++..... ....     ........
T Consensus       154 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~~-----~~~~~~~~  224 (263)
T cd06625         154 LQTICS---SGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEFEA-MAAI-----FKIATQPT  224 (263)
T ss_pred             cccccc---ccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCccccch-HHHH-----HHHhccCC
Confidence            532111   01111234678899999999999999999999999887776554333221111 1000     00000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                        ....++.....+.+++.+||+.+|++|||++|+++.
T Consensus       225 --~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~  260 (263)
T cd06625         225 --NPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRH  260 (263)
T ss_pred             --CCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhC
Confidence              001111122223347779999999999999999763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=5.9e-29  Score=266.13  Aligned_cols=216  Identities=22%  Similarity=0.296  Sum_probs=157.0

Q ss_pred             eeecccCceeEEeccccC-------------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          667 NLIGSGSFGSVLHNERTG-------------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~-------------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +.||+|+||.||+|....                         ..+.|.+|+.++++++||||+++++++.. .     .
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~-----~   74 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKHLVKLYGVCVR-D-----E   74 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcchhheeeEEec-C-----C
Confidence            468999999999877631                         13568899999999999999999999865 2     2


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-------ceEEec
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-------TAKVGD  785 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-------~~ki~D  785 (929)
                      .++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++       .+|++|
T Consensus        75 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dlkp~Nill~~~~~~~~~~~~~kl~D  151 (259)
T cd05037          75 NIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDK---KLVHGNVCGKNILVARYGLNEGYVPFIKLSD  151 (259)
T ss_pred             cEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC---CeecccCccceEEEecCccccCCceeEEeCC
Confidence            699999999999999886432         2356999999999997   999999999999999888       799999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHH
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPEL  863 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  863 (929)
                      ||+++....          .....++..|+|||++.+.  .++.++||||+|++++++...    +..|.....  ....
T Consensus       152 fg~a~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~~~----~~~p~~~~~--~~~~  215 (259)
T cd05037         152 PGIPITVLS----------REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEICSN----GEEPLSTLS--SSEK  215 (259)
T ss_pred             CCccccccc----------ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHHhC----CCCCcccCC--chhH
Confidence            999986521          1223567789999999877  789999999999877764331    222210000  0000


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      ..............   ...+. +++.+||+.+|++||++.|+++.|+
T Consensus       216 ~~~~~~~~~~~~~~---~~~~~-~li~~~l~~~p~~Rpt~~~il~~l~  259 (259)
T cd05037         216 ERFYQDQHRLPMPD---CAELA-NLINQCWTYDPTKRPSFRAILRDLN  259 (259)
T ss_pred             HHHHhcCCCCCCCC---chHHH-HHHHHHhccChhhCCCHHHHHHhcC
Confidence            00000000000000   12233 3778999999999999999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.95  E-value=3.8e-29  Score=269.06  Aligned_cols=229  Identities=21%  Similarity=0.271  Sum_probs=162.5

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ++|+..+.||+|+||.||+|+...                ....+.+|+.+++.++||||+++++++...     ...++
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~-----~~~~l   83 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRR-----DKLWI   83 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeC-----CEEEE
Confidence            467777899999999999987541                224577899999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||||+++|+|.++++...        .++.|++.|++|||+.   +++||||||+||+++.++.+||+|||++...... 
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~-  159 (267)
T cd06645          84 CMEFCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSK---GKMHRDIKGANILLTDNGHVKLADFGVSAQITAT-  159 (267)
T ss_pred             EEeccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEECcceeeeEccCc-
Confidence            999999999999876332        3367899999999998   9999999999999999999999999998765321 


Q ss_pred             CCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                           ........|+..|+|||++.   ...++.++||||+|++++++.....++..... ...+...............
T Consensus       160 -----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~  233 (267)
T cd06645         160 -----IAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHP-MRALFLMTKSNFQPPKLKD  233 (267)
T ss_pred             -----ccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCCcccccc-hhhHHhhhccCCCCCcccc
Confidence                 11123347899999999874   45689999999999887775443332211111 0000000000000000000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....++    .+.+++.+|++.+|++||+++++++
T Consensus       234 ~~~~~~----~~~~li~~~l~~~P~~R~~~~~ll~  264 (267)
T cd06645         234 KMKWSN----SFHHFVKMALTKNPKKRPTAEKLLQ  264 (267)
T ss_pred             cCCCCH----HHHHHHHHHccCCchhCcCHHHHhc
Confidence            001112    2334777999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.95  E-value=3e-29  Score=274.19  Aligned_cols=227  Identities=22%  Similarity=0.239  Sum_probs=168.0

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ++|+..+.||+|+||.||++...                ...+.+.+|+.+++.++||||+++++++...     ...++
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~~~~l   93 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-----DELWV   93 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----CEEEE
Confidence            57888999999999999998753                1245678899999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++++|.+++.+..       .++.+++.||+|||+.   +++||||||+||+++.++.+||+|||+++...... 
T Consensus        94 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~-  169 (297)
T cd06656          94 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-  169 (297)
T ss_pred             eecccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEECcCccceEccCCc-
Confidence            999999999999886422       3356899999999998   99999999999999999999999999987653221 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......|++.|+|||.+.+..++.++||||+|++++++.....++..... ....... ...     .......
T Consensus       170 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~~~-~~~~~~~-~~~-----~~~~~~~  237 (297)
T cd06656         170 -----SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRALYLI-ATN-----GTPELQN  237 (297)
T ss_pred             -----cCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCc-chheeee-ccC-----CCCCCCC
Confidence                 111234688999999999998899999999999887776554433321111 0000000 000     0000011


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +..+...+++++.+||+.+|++||+++|+++
T Consensus       238 ~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (297)
T cd06656         238 PERLSAVFRDFLNRCLEMDVDRRGSAKELLQ  268 (297)
T ss_pred             ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            1223333445778999999999999999987

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=3.3e-29  Score=261.07  Aligned_cols=228  Identities=25%  Similarity=0.278  Sum_probs=170.8

Q ss_pred             CCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +|+..+.||.|.-|+||.++..+.                   ..+...|.+||+.++||.++.+|+.+.     ...+.
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fe-----t~~~~  152 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFE-----TDKYS  152 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheee-----cccee
Confidence            344568899999999999887632                   235567999999999999999999984     45568


Q ss_pred             EEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |+|||||+||+|....+++          |.++.+|..||+|||-.   |||.|||||+||||.++|++.++||-++...
T Consensus       153 cl~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHml---GivYRDLKPENILvredGHIMLsDFDLS~~~  229 (459)
T KOG0610|consen  153 CLVMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHML---GIVYRDLKPENILVREDGHIMLSDFDLSLRC  229 (459)
T ss_pred             EEEEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhh---ceeeccCCcceeEEecCCcEEeeeccccccC
Confidence            9999999999999887643          34467899999999998   9999999999999999999999999988643


Q ss_pred             cc-----------------------------c---cCC------------------CCCccccceeccccccccccccCC
Q 002376          793 LE-----------------------------R---VDN------------------QSSISSTHVFMGSIGYVPPEYGLG  822 (929)
Q Consensus       793 ~~-----------------------------~---~~~------------------~~~~~~~~~~~gt~~y~aPE~~~~  822 (929)
                      ..                             .   ...                  .........++||-.|+|||+++|
T Consensus       230 ~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G  309 (459)
T KOG0610|consen  230 PVSPTLVKSSSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRG  309 (459)
T ss_pred             CCCCeeeccCCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeec
Confidence            10                             0   000                  000122356789999999999999


Q ss_pred             CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCC
Q 002376          823 ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGR  900 (929)
Q Consensus       823 ~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  900 (929)
                      ...+.++|=|++|+++||+..+.-++.....  .+..++...+.-  +...        .++..++||+++.+..||.+|
T Consensus       310 ~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~~~Tl~NIv~~~l~F--p~~~--------~vs~~akDLIr~LLvKdP~kR  379 (459)
T KOG0610|consen  310 EGHGSAVDWWTFGIFLYEMLYGTTPFKGSNNKETLRNIVGQPLKF--PEEP--------EVSSAAKDLIRKLLVKDPSKR  379 (459)
T ss_pred             CCCCchhhHHHHHHHHHHHHhCCCCcCCCCchhhHHHHhcCCCcC--CCCC--------cchhHHHHHHHHHhccChhhh
Confidence            9999999999999888887655555443322  334444333221  1111        234455668889999999999


Q ss_pred             CC----HHHHH
Q 002376          901 IG----IREAL  907 (929)
Q Consensus       901 Ps----~~ev~  907 (929)
                      --    ++||-
T Consensus       380 lg~~rGA~eIK  390 (459)
T KOG0610|consen  380 LGSKRGAAEIK  390 (459)
T ss_pred             hccccchHHhh
Confidence            87    66664

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.2e-28  Score=273.79  Aligned_cols=212  Identities=25%  Similarity=0.250  Sum_probs=149.1

Q ss_pred             ecccCceeEEeccccCc-------------------HHHHHHHHHHHHcc---CCccccceeeecccCCCCCcceEEEEE
Q 002376          669 IGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNV---RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ||+|+||+||+|+....                   ...+..|..++.+.   +||||+++++++...     ...|+||
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~-----~~~~lv~   75 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTD-----SDLYLVT   75 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecC-----CeEEEEE
Confidence            69999999999876411                   12334566666655   699999999988543     3489999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....   
T Consensus        76 e~~~~g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~---~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~---  149 (330)
T cd05586          76 DYMSGGELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKY---DIVYRDLKPENILLDATGHIALCDFGLSKANLTD---  149 (330)
T ss_pred             cCCCCChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeEECCCCCEEEecCCcCcCCCCC---
Confidence            9999999998876432        2367899999999998   9999999999999999999999999998753211   


Q ss_pred             CCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                         .......+||+.|||||++.+.. ++.++||||+|+++|++..+..++....  ..+..    ............  
T Consensus       150 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~~Pf~~~~--~~~~~----~~i~~~~~~~~~--  218 (330)
T cd05586         150 ---NKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGWSPFYAED--TQQMY----RNIAFGKVRFPK--  218 (330)
T ss_pred             ---CCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCCCCCCCCC--HHHHH----HHHHcCCCCCCC--
Confidence               11123457999999999987654 8999999999999998766554432211  11111    100000000000  


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                       ..+...+++++.+|++.||++||++
T Consensus       219 -~~~~~~~~~li~~~L~~~P~~R~~~  243 (330)
T cd05586         219 -NVLSDEGRQFVKGLLNRNPQHRLGA  243 (330)
T ss_pred             -ccCCHHHHHHHHHHcCCCHHHCCCC
Confidence             0112222346779999999999954

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.95  E-value=1.2e-28  Score=268.81  Aligned_cols=227  Identities=20%  Similarity=0.274  Sum_probs=161.7

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|+..+.||+|+||.||+|+...                ..+.+.+|+++++.++||||+++++++...     ...++
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~l   86 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWD-----GKLWI   86 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeC-----CeEEE
Confidence            567888999999999999987642                235688899999999999999999988543     35899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||+++++|..++.+.         .....|++.|++|||+.   +++|||+||+||+++.++.+||+|||+++.....
T Consensus        87 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~  163 (292)
T cd06644          87 MIEFCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSM---KIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKT  163 (292)
T ss_pred             EEecCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeecCCCcceEEEcCCCCEEEccCccceecccc
Confidence            99999999998776432         12367899999999998   9999999999999999999999999998753211


Q ss_pred             cCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                            ........|++.|+|||++.     ...++.++||||+|+++|++.....++.....  .+    .........
T Consensus       164 ------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~--~~----~~~~~~~~~  231 (292)
T cd06644         164 ------LQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MR----VLLKIAKSE  231 (292)
T ss_pred             ------ccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcCCCCCccccH--HH----HHHHHhcCC
Confidence                  11123346889999999985     34478899999999887775544333221111  00    011111000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ............++. +++.+||+.+|++||++.|+++
T Consensus       232 ~~~~~~~~~~~~~~~-~li~~~l~~~p~~Rp~~~~il~  268 (292)
T cd06644         232 PPTLSQPSKWSMEFR-DFLKTALDKHPETRPSAAQLLE  268 (292)
T ss_pred             CccCCCCcccCHHHH-HHHHHHhcCCcccCcCHHHHhc
Confidence            000000001111223 3777999999999999999975

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=5.3e-29  Score=266.06  Aligned_cols=230  Identities=26%  Similarity=0.351  Sum_probs=164.3

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .+|+..+.||+|+||.||++.+.              ....+|.+|++++++++|||++++++++...     ...++||
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~~v~   78 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPKLVQLYGVCTER-----SPICLVF   78 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCCeeeEEEEEccC-----CceEEEE
Confidence            35677899999999999998653              1245799999999999999999999998543     3479999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.++++...         ..+.+++.|++|||+.   +++||||||+||+++.++.+||+|||+++...... 
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~-  154 (256)
T cd05112          79 EFMEHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESS---NVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQ-  154 (256)
T ss_pred             EcCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CccccccccceEEEcCCCeEEECCCcceeecccCc-
Confidence            9999999999886322         2356889999999998   89999999999999999999999999987653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          ........++.+|+|||++.++.++.++||||+|++++++..    .+..|...  .....+..........  ..
T Consensus       155 ----~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~----~g~~p~~~--~~~~~~~~~~~~~~~~--~~  222 (256)
T cd05112         155 ----YTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFS----EGKTPYEN--RSNSEVVETINAGFRL--YK  222 (256)
T ss_pred             ----ccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHc----CCCCCCCc--CCHHHHHHHHhCCCCC--CC
Confidence                011112245678999999998899999999999987766432    12222100  0000111111100000  00


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      +......+.+++.+||+.+|++||+|.|++++|.
T Consensus       223 ~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~l~  256 (256)
T cd05112         223 PRLASQSVYELMQHCWKERPEDRPSFSLLLHQLA  256 (256)
T ss_pred             CCCCCHHHHHHHHHHcccChhhCCCHHHHHHhhC
Confidence            0011123334888999999999999999998873

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>PTZ00284 protein kinase; Provisional

Probab=99.95  E-value=3.7e-29  Score=290.68  Aligned_cols=179  Identities=23%  Similarity=0.310  Sum_probs=139.6

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCc------cccceeeecc
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHR------NLVKLITSCS  712 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hp------niv~l~~~~~  712 (929)
                      +++...+++|+..++||+|+||+||+|++..               ..+.+..|++++++++|.      +++++++++.
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~  201 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQ  201 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEE
Confidence            3445567899999999999999999987641               123456788888877654      5888888875


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-----
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-----  779 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-----  779 (929)
                      ..    ..+.++|||++ +++|.+++.+..        .++.||+.||+|||+.  .+||||||||+|||++.++     
T Consensus       202 ~~----~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~--~gIiHrDlKP~NILl~~~~~~~~~  274 (467)
T PTZ00284        202 NE----TGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTE--LHLMHTDLKPENILMETSDTVVDP  274 (467)
T ss_pred             cC----CceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhc--CCeecCCCCHHHEEEecCCccccc
Confidence            32    34589999998 678888876432        3467999999999973  2899999999999998765     


Q ss_pred             -----------ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          780 -----------TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       780 -----------~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                                 .+||+|||.+....         ......+||+.|||||++.+..++.++||||+||++|++..+..++
T Consensus       275 ~~~~~~~~~~~~vkl~DfG~~~~~~---------~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf  345 (467)
T PTZ00284        275 VTNRALPPDPCRVRICDLGGCCDER---------HSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLY  345 (467)
T ss_pred             ccccccCCCCceEEECCCCccccCc---------cccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                       49999999876321         1123468999999999999999999999999999988876655544

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=3.1e-29  Score=291.22  Aligned_cols=239  Identities=24%  Similarity=0.278  Sum_probs=164.6

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCC---
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK---  717 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~---  717 (929)
                      +...+|+..++||+||||.|||++.+-                 ......+|++.+++++|||||+++..+.+...+   
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~  555 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTV  555 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccc
Confidence            345577778899999999999988761                 223567899999999999999988776643110   


Q ss_pred             --------------------------------------------------------------------------------
Q 002376          718 --------------------------------------------------------------------------------  717 (929)
Q Consensus       718 --------------------------------------------------------------------------------  717 (929)
                                                                                                      
T Consensus       556 ~ei~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~  635 (1351)
T KOG1035|consen  556 LEIVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSD  635 (1351)
T ss_pred             ccccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccc
Confidence                                                                                            


Q ss_pred             -------------------------------CcceEEEEEEecCCCCcccccccccc---------ccccHHHHHHHhhh
Q 002376          718 -------------------------------NMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHN  757 (929)
Q Consensus       718 -------------------------------~~~~~~lV~e~~~~gsL~~~l~~~~~---------~~~~ia~aL~yLH~  757 (929)
                                                     ....+|+-||||+...++++++....         ...+|+.||+|+|+
T Consensus       636 ~e~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~  715 (1351)
T KOG1035|consen  636 SEGSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHD  715 (1351)
T ss_pred             cCCccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHh
Confidence                                           00236788899988778777764332         25689999999999


Q ss_pred             CCCCCEEecCCCCCCeeecCCCceEEecccccccccc---c---------cCCCCCccccceeccccccccccccCCCC-
Q 002376          758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE---R---------VDNQSSISSTHVFMGSIGYVPPEYGLGER-  824 (929)
Q Consensus       758 ~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~---~---------~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-  824 (929)
                      .   +||||||||.||++|++..+||+|||+|.....   .         ..........+..+||.-|+|||++.+.. 
T Consensus       716 ~---giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~  792 (1351)
T KOG1035|consen  716 Q---GIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSS  792 (1351)
T ss_pred             C---ceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeeeecHHHhccccc
Confidence            8   899999999999999999999999999987320   0         00011122346679999999999998765 


Q ss_pred             --CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH-HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCC
Q 002376          825 --PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR-QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI  901 (929)
Q Consensus       825 --~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  901 (929)
                        |+.|+|+||+|++.+|+... +....  ++.. ++ ..++ ..++.......   +.+..-.+ ++.++++.||++||
T Consensus       793 ~~Yn~KiDmYSLGIVlFEM~yP-F~TsM--ERa~-iL-~~LR~g~iP~~~~f~~---~~~~~e~s-lI~~Ll~hdP~kRP  863 (1351)
T KOG1035|consen  793 NKYNSKIDMYSLGIVLFEMLYP-FGTSM--ERAS-IL-TNLRKGSIPEPADFFD---PEHPEEAS-LIRWLLSHDPSKRP  863 (1351)
T ss_pred             ccccchhhhHHHHHHHHHHhcc-CCchH--HHHH-HH-HhcccCCCCCCccccc---ccchHHHH-HHHHHhcCCCccCC
Confidence              99999999999887775322 11111  1110 00 1111 11111100000   11222223 77799999999999


Q ss_pred             CHHHHHH
Q 002376          902 GIREALR  908 (929)
Q Consensus       902 s~~ev~~  908 (929)
                      ||.|++.
T Consensus       864 tA~eLL~  870 (1351)
T KOG1035|consen  864 TATELLN  870 (1351)
T ss_pred             CHHHHhh
Confidence            9999874

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.95  E-value=1.6e-28  Score=272.87  Aligned_cols=175  Identities=24%  Similarity=0.259  Sum_probs=140.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..++||+|+||.||+++...                   ..+.|.+|+.++..++||+|+++++++.+     ...
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~   75 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQD-----ENN   75 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEec-----CCE
Confidence            478889999999999999987642                   12247789999999999999999998854     335


Q ss_pred             EEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .|+||||+++|+|.+++++.         +.++.|++.|++|||+.   +|+||||||+|||++.++.+||+|||+++.+
T Consensus        76 ~~lv~ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~---~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~  152 (332)
T cd05623          76 LYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFGSCLKL  152 (332)
T ss_pred             EEEEEeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCHHHEEECCCCCEEEeecchheec
Confidence            89999999999999998642         12356899999999998   9999999999999999999999999998754


Q ss_pred             ccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ....     .......+||+.|||||++.     ...++.++||||+|++++++..+..++
T Consensus       153 ~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf  208 (332)
T cd05623         153 MEDG-----TVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPF  208 (332)
T ss_pred             ccCC-----cceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCC
Confidence            2211     11122357999999999986     346899999999998887765554443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.95  E-value=1e-28  Score=264.35  Aligned_cols=224  Identities=24%  Similarity=0.364  Sum_probs=164.6

Q ss_pred             eeecccCceeEEeccccCc--------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTGS--------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~~--------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+|.....                    .+.+.+|++.++.++|+|++++++++..     ....++||
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~lv~   75 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTE-----EEPLYLVL   75 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecC-----CCceEEEE
Confidence            4699999999999876421                    4678899999999999999999999865     33489999


Q ss_pred             EecCCCCcccccccc---------c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          727 EFLSNGSLGDWIHGE---------R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       727 e~~~~gsL~~~l~~~---------~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ||+++|+|.+++...         .        .++.+++.|++|||+.   +++||||||+||++++++.+|++|||.+
T Consensus        76 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~di~p~nili~~~~~~~l~dfg~~  152 (262)
T cd00192          76 EYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHRDLAARNCLVGEDLVVKISDFGLS  152 (262)
T ss_pred             EeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccCccCcceEEECCCCcEEEcccccc
Confidence            999999999998754         1        2356899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh-HHhhhcCCchhhhccChHHHHhhc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV-KWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +.......    ........+++.|+|||.+.+..++.++||||+|++++++... ..++.....       ..+.....
T Consensus       153 ~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-------~~~~~~~~  221 (262)
T cd00192         153 RDVYDDDY----YRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLSN-------EEVLEYLR  221 (262)
T ss_pred             cccccccc----cccccCCCcCccccCHHHhccCCcchhhccHHHHHHHHHHHhcCCCCCCCCCH-------HHHHHHHH
Confidence            87643211    1112334678899999999988999999999999877765331 222221111       11111111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      ...  ....+...+..+.+++.+||+.+|++||++.|+++.|+
T Consensus       222 ~~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~l~  262 (262)
T cd00192         222 KGY--RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVERLE  262 (262)
T ss_pred             cCC--CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHhhC
Confidence            000  00111111222334777999999999999999998874

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.95  E-value=5.6e-29  Score=271.85  Aligned_cols=227  Identities=22%  Similarity=0.259  Sum_probs=166.2

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .+|+..+.||.|+||.||+|...                ...+.+.+|+.+++.++|||++++++++...     ...++
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~l   93 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVG-----DELFV   93 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecC-----ceEEE
Confidence            46888899999999999988643                2345788999999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++|+|.+++....       .+..+++.|++|||+.   +++||||||+||++++++.+||+|||+++.......
T Consensus        94 v~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~  170 (296)
T cd06655          94 VMEYLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHAN---QVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS  170 (296)
T ss_pred             EEEecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccchhcccccc
Confidence            999999999999876432       2356899999999998   999999999999999999999999999886532211


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                            ......|+..|+|||.+.+..++.++||||+|++++++.....++..... ..+     ....... .......
T Consensus       171 ------~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~~~-~~~-----~~~~~~~-~~~~~~~  237 (296)
T cd06655         171 ------KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRA-----LYLIATN-GTPELQN  237 (296)
T ss_pred             ------cCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-HHH-----HHHHHhc-CCcccCC
Confidence                  11234688999999999998899999999999887776544333221111 000     0000000 0000001


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +..+...+.+++.+||..||++||++.+++.
T Consensus       238 ~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~  268 (296)
T cd06655         238 PEKLSPIFRDFLNRCLEMDVEKRGSAKELLQ  268 (296)
T ss_pred             cccCCHHHHHHHHHHhhcChhhCCCHHHHhh
Confidence            1112223344778999999999999999974

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.95  E-value=8.5e-29  Score=246.78  Aligned_cols=235  Identities=21%  Similarity=0.212  Sum_probs=176.0

Q ss_pred             hCCCCCc-eeecccCceeEEeccccCcHHHH-----------HHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHE-NLIGSGSFGSVLHNERTGSWKSF-----------IAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~-~~iG~G~~g~Vy~~~~~~~~~~~-----------~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      |++|+.. ++||-|-.|+|..+..+.+.+.|           .+|++.--.. .|||||.++++|...- .+...+.+||
T Consensus        60 tedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds~KARrEVeLHw~~s~h~~iV~IidVyeNs~-~~rkcLLiVm  138 (400)
T KOG0604|consen   60 TEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLDSPKARREVELHWMASGHPHIVSIIDVYENSY-QGRKCLLIVM  138 (400)
T ss_pred             hhhheehhhhhccccCCceEEEEeccchhhhHHHHHhcCHHHHhHhhhhhhhcCCCceEEeehhhhhhc-cCceeeEeee
Confidence            4556544 58999999999988887655544           4788865555 6999999999985432 4567789999


Q ss_pred             EecCCCCcccccccccc----------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEeccccccccc
Q 002376          727 EFLSNGSLGDWIHGERK----------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLL  793 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~~----------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~  793 (929)
                      |+|+||.|+..+.+++.          +..||+.|++|||+.   +|.||||||+|+|...   +..+|++|||+|+.-.
T Consensus       139 E~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~---nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~  215 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSM---NIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ  215 (400)
T ss_pred             ecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhc---chhhccCChhheeeecCCCCcceEecccccccccC
Confidence            99999999999876553          356899999999998   9999999999999964   4579999999998532


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc-ccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT-SNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~  872 (929)
                      .       .......+-|+.|.|||++...+|+..+|+||.|+++|-+.-+.-++-.   .-...+.+.++..+. ....
T Consensus       216 ~-------~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS---~hg~aispgMk~rI~~gqy~  285 (400)
T KOG0604|consen  216 E-------PGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYS---NHGLAISPGMKRRIRTGQYE  285 (400)
T ss_pred             C-------CccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccc---cCCccCChhHHhHhhccCcc
Confidence            1       1223445779999999999999999999999999877654332222211   111233444433221 1223


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...+.|.|+++..+++++..+..+|.+|-|+.|++.
T Consensus       286 FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~  321 (400)
T KOG0604|consen  286 FPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMD  321 (400)
T ss_pred             CCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhc
Confidence            344567899999999999999999999999998864

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=8e-29  Score=269.40  Aligned_cols=227  Identities=18%  Similarity=0.278  Sum_probs=163.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||++....                 ..+.+.+|+.++++++||||+++++++...     ...+
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----~~~~   75 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIE-----GAVY   75 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecC-----CeEE
Confidence            357788999999999999987641                 134688999999999999999999988543     3589


Q ss_pred             EEEEecCCCCcccccccc-----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE-----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~-----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +||||+++++|.++++..           ..++.+++.|++|||+.+  +|+||||||+||+++.++.+||+|||+++.+
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  153 (286)
T cd06622          76 MCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL  153 (286)
T ss_pred             EEEeecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeCCCCHHHEEECCCCCEEEeecCCcccc
Confidence            999999999999887642           123568999999999642  8999999999999999999999999998765


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC------CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER------PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      ...        ......|++.|+|||++.+..      ++.++||||+|++++++.+...++.....  .... ..+...
T Consensus       154 ~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~-~~~~~~  222 (286)
T cd06622         154 VAS--------LAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMALGRYPYPPETY--ANIF-AQLSAI  222 (286)
T ss_pred             cCC--------ccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHHhCCCCCCCcch--hhHH-HHHHHH
Confidence            211        112236888999999986543      58899999999887776554444322111  1110 111111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....   ...+......+.+++.+||+.+|++||++++++.
T Consensus       223 ~~~~~---~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  261 (286)
T cd06622         223 VDGDP---PTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLE  261 (286)
T ss_pred             hhcCC---CCCCcccCHHHHHHHHHHcccCcccCCCHHHHhc
Confidence            11110   0111112223334777999999999999999886

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=4e-28  Score=261.00  Aligned_cols=230  Identities=21%  Similarity=0.294  Sum_probs=165.3

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------------cHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      +|...+.||+|+||.||+|....                         ..+.+.+|+.++++++||||+++++++...  
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~--   78 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDA--   78 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeC--
Confidence            35677899999999999986531                         014577899999999999999999998543  


Q ss_pred             CCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                         ...++||||+++++|.+++....        .++.+++.|++|||+.   +++||||||+||++++++.+||+|||.
T Consensus        79 ---~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~di~p~nil~~~~~~~~l~dfg~  152 (267)
T cd06628          79 ---DHLNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNR---GIIHRDIKGANILVDNKGGIKISDFGI  152 (267)
T ss_pred             ---CccEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhc---CcccccCCHHHEEEcCCCCEEecccCC
Confidence               34799999999999999886432        3467899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ++...................|+..|+|||++.+..++.++||||+|++++++.....++..... ...+.  ...... 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-~~~~~--~~~~~~-  228 (267)
T cd06628         153 SKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCTQ-LQAIF--KIGENA-  228 (267)
T ss_pred             CcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCccH-HHHHH--HHhccC-
Confidence            98764221111111112234688999999999998999999999999877775544333322111 10000  000000 


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ...    ........+.+++.+||+.||++||++.|+++
T Consensus       229 -~~~----~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  263 (267)
T cd06628         229 -SPE----IPSNISSEAIDFLEKTFEIDHNKRPTAAELLK  263 (267)
T ss_pred             -CCc----CCcccCHHHHHHHHHHccCCchhCcCHHHHhh
Confidence             000    11112222334777999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=9.3e-29  Score=269.04  Aligned_cols=232  Identities=21%  Similarity=0.217  Sum_probs=167.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||.|++|.||++....                 ..+++.+|++++++++||||++++++|...+   ....+
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~---~~~~~   77 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDES---SSSIG   77 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccC---CCeEE
Confidence            467888999999999999988641                 2356889999999999999999999986532   33579


Q ss_pred             EEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +||||+++++|.+++...            ..++.|++.||+|||+.   +++||||+|+||++++++.+||+|||++..
T Consensus        78 lv~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~  154 (287)
T cd06621          78 IAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHRDIKPSNILLTRKGQVKLCDFGVSGE  154 (287)
T ss_pred             EEEEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecCCeEEEeecccccc
Confidence            999999999998876421            12467899999999998   999999999999999999999999999875


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc-c
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS-N  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  870 (929)
                      ....        ......++..|+|||.+.+..++.++|||++|++++++..+..++......  ............. .
T Consensus       155 ~~~~--------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~  224 (287)
T cd06621         155 LVNS--------LAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPEGEP--PLGPIELLSYIVNMP  224 (287)
T ss_pred             cccc--------ccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcccCC--CCChHHHHHHHhcCC
Confidence            4221        112345788999999999999999999999998887766555443322110  0000111111000 0


Q ss_pred             -c--hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 -E--SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 -~--~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       .  ...........+.+.+++.+||+.+|++||||.|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~  265 (287)
T cd06621         225 NPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLE  265 (287)
T ss_pred             chhhccCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHh
Confidence             0  0000000112233445888999999999999999986

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.95  E-value=6.9e-29  Score=265.10  Aligned_cols=227  Identities=23%  Similarity=0.279  Sum_probs=167.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||+|....              ..+++.+|++++++++||||+++++++...     ...|+|+
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-----~~~~l~~   77 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKYYGSYFKN-----TDLWIVM   77 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC-----CcEEEEE
Confidence            578888999999999999987652              245789999999999999999999998653     4489999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++++|.+++....         .++.+++.|++|||+.   +++|||++|+||++++++.+||+|||++....... 
T Consensus        78 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~-  153 (256)
T cd06612          78 EYCGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSN---KKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTM-  153 (256)
T ss_pred             ecCCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEECCCCcEEEcccccchhcccCc-
Confidence            9999999999886322         3467899999999998   89999999999999999999999999998653221 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......|+..|+|||++.+..++.++||||+|++++++.....++..... ....     ... ..........
T Consensus       154 -----~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~~~-~~~~-----~~~-~~~~~~~~~~  221 (256)
T cd06612         154 -----AKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDIHP-MRAI-----FMI-PNKPPPTLSD  221 (256)
T ss_pred             -----cccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCcch-hhhh-----hhh-ccCCCCCCCc
Confidence                 112234588999999999998999999999999887776544333221111 0000     000 0000000000


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......+.+++.+||+.||++|||+.|+++
T Consensus       222 ~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~  252 (256)
T cd06612         222 PEKWSPEFNDFVKKCLVKDPEERPSAIQLLQ  252 (256)
T ss_pred             hhhcCHHHHHHHHHHHhcChhhCcCHHHHhc
Confidence            1111122233777999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=4.1e-29  Score=270.81  Aligned_cols=229  Identities=23%  Similarity=0.329  Sum_probs=165.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||++....                ..+.|.+|++++++++||||+++++++...     ...+
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   78 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYE-----NKLW   78 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecC-----CeEE
Confidence            3568888999999999999987641                235688999999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++|+|.+++....         .++.|++.|++|||+.   +|+||||||+||+++.++.+||+|||++.....
T Consensus        79 lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~  155 (280)
T cd06611          79 ILIEFCDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSH---KVIHRDLKAGNILLTLDGDVKLADFGVSAKNKS  155 (280)
T ss_pred             EEeeccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEECCCCCEEEccCccchhhcc
Confidence            9999999999999886422         2467899999999998   999999999999999999999999999875421


Q ss_pred             ccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .      ........|++.|+|||++.     +..++.++||||+|++++++.....++.....  .+.    +..... 
T Consensus       156 ~------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~~p~~~~~~--~~~----~~~~~~-  222 (280)
T cd06611         156 T------LQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQMEPPHHELNP--MRV----LLKILK-  222 (280)
T ss_pred             c------ccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCCCCcccCCH--HHH----HHHHhc-
Confidence            1      11123456899999999875     34578899999999887776544433322111  000    111000 


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ........++.....+.+++.+||+.+|++||++.++++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  262 (280)
T cd06611         223 SEPPTLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKH  262 (280)
T ss_pred             CCCCCcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcC
Confidence            0000000111112223347779999999999999999753

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-28  Score=291.12  Aligned_cols=238  Identities=23%  Similarity=0.378  Sum_probs=175.6

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeec
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSC  711 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~  711 (929)
                      +...++.+..+.+|+|+||.|++|...                        .+.+.+..|+++|..+ +|||||.++|+|
T Consensus       292 e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~  371 (609)
T KOG0200|consen  292 EIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGAC  371 (609)
T ss_pred             eechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeee
Confidence            333444555679999999999987633                        1356889999999998 599999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecC
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSD  767 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrD  767 (929)
                      ...     +..++|+||++.|+|.++++..+                        .++.|||.||+||++.   ++||||
T Consensus       372 t~~-----~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHRD  443 (609)
T KOG0200|consen  372 TQD-----GPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHRD  443 (609)
T ss_pred             ccC-----CceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---Cccchh
Confidence            763     34899999999999999998766                        1257999999999998   899999


Q ss_pred             CCCCCeeecCCCceEEeccccccccccccCCCCCccccceecc--ccccccccccCCCCCCCCCCCCCCcCCCCCcchhH
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG--SIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      +.++|||+.++..+||+|||+||.....     .........|  ...|||||.+....|+.|+||||||+.+||+  ..
T Consensus       444 LAaRNVLi~~~~~~kIaDFGlar~~~~~-----~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfGI~L~Ei--fs  516 (609)
T KOG0200|consen  444 LAARNVLITKNKVIKIADFGLARDHYNK-----DYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFGILLWEI--FT  516 (609)
T ss_pred             hhhhhEEecCCCEEEEccccceeccCCC-----CceEecCCCCccceeecCHHHhccCcccccchhhHHHHHHHHH--hh
Confidence            9999999999999999999999964321     1111111122  4469999999999999999999999988883  22


Q ss_pred             HhhhcCCchhhhcc-ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          846 WVESNLPENVLQVL-DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       846 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      +....+|.    +. ...+.+.+.... .......|..++.. +|..||+.+|++||++.|+++.++....
T Consensus       517 LG~~PYp~----~~~~~~l~~~l~~G~-r~~~P~~c~~eiY~-iM~~CW~~~p~~RP~F~~~~~~~~~~l~  581 (609)
T KOG0200|consen  517 LGGTPYPG----IPPTEELLEFLKEGN-RMEQPEHCSDEIYD-LMKSCWNADPEDRPTFSECVEFFEKHLQ  581 (609)
T ss_pred             CCCCCCCC----CCcHHHHHHHHhcCC-CCCCCCCCCHHHHH-HHHHHhCCCcccCCCHHHHHHHHHHHHH
Confidence            22233332    11 122222111111 11112234555665 8999999999999999999999999644

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.95  E-value=1.1e-28  Score=270.99  Aligned_cols=237  Identities=20%  Similarity=0.232  Sum_probs=166.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||++....                   ..+.+.+|+++++.++||||+++++++..     ...
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~   75 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFET-----KRH   75 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEec-----CCE
Confidence            368888999999999999886541                   13457789999999999999999998854     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+++|+|.++++...        .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++...
T Consensus        76 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~  152 (305)
T cd05609          76 LCMVMEYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKIGL  152 (305)
T ss_pred             EEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHEEECCCCCEEEeeCCCccccC
Confidence            899999999999999986432        2356899999999998   99999999999999999999999999987421


Q ss_pred             cccCC---------CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          794 ERVDN---------QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       794 ~~~~~---------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      .....         ...........|+..|+|||++.+..++.++||||+|++++++.++..++...  ...++......
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~--~~~~~~~~~~~  230 (305)
T cd05609         153 MSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD--TPEELFGQVIS  230 (305)
T ss_pred             cCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHh
Confidence            00000         00000112346788999999999889999999999998877765544333211  11111111111


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .... .....    ...+..+.+++.+||+.||++||++.++.+.++.
T Consensus       231 ~~~~-~~~~~----~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~  273 (305)
T cd05609         231 DDIE-WPEGD----EALPADAQDLISRLLRQNPLERLGTGGAFEVKQH  273 (305)
T ss_pred             cccC-CCCcc----ccCCHHHHHHHHHHhccChhhccCccCHHHHHhC
Confidence            1000 00000    0122223347779999999999997666666655

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=2.9e-28  Score=259.34  Aligned_cols=224  Identities=24%  Similarity=0.307  Sum_probs=158.9

Q ss_pred             eeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecC
Q 002376          667 NLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS  730 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~  730 (929)
                      ++||+|+||.||+|....                ....|.+|++++++++||||+++++++....     ..++||||++
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~e~~~   75 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQ-----PIYIVMELVP   75 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCC-----ccEEEEECCC
Confidence            368999999999986431                1236889999999999999999999985433     4799999999


Q ss_pred             CCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          731 NGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       731 ~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      +|+|.+++....         .+..+++.|+.|+|+.   +++||||||+||++++++.+|++|||+++.......    
T Consensus        76 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~----  148 (250)
T cd05085          76 GGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY----  148 (250)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccChheEEEcCCCeEEECCCccceecccccc----
Confidence            999999875321         2356899999999998   999999999999999999999999999875422111    


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL  881 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  881 (929)
                       .......+++.|+|||++.+..++.++||||+|++++++..    .+..|...  ..............  +...+...
T Consensus       149 -~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~----~g~~p~~~--~~~~~~~~~~~~~~--~~~~~~~~  219 (250)
T cd05085         149 -SSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFS----LGVCPYPG--MTNQQAREQVEKGY--RMSCPQKC  219 (250)
T ss_pred             -ccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhc----CCCCCCCC--CCHHHHHHHHHcCC--CCCCCCCC
Confidence             01111234678999999998899999999999987766432    12222100  00001111000000  00001112


Q ss_pred             HHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          882 ITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       882 ~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      ...+.+++.+|++.+|++||++.|++++|.
T Consensus       220 ~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~  249 (250)
T cd05085         220 PDDVYKVMQRCWDYKPENRPKFSELQKELA  249 (250)
T ss_pred             CHHHHHHHHHHcccCcccCCCHHHHHHHhc
Confidence            223334888999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.95  E-value=3.4e-28  Score=259.54  Aligned_cols=225  Identities=25%  Similarity=0.348  Sum_probs=164.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ++|+..+.||+|+||.||++...+            ..+.+.+|+.++++++|||++++++++...      ..++||||
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~------~~~~v~e~   79 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHN------GLYIVMEL   79 (254)
T ss_pred             HHceeeeeeccCCCCceEecccCCCceEEEeecCcchHHHHHHHHHHHHhCCCCCcCeEEEEEcCC------CcEEEEEC
Confidence            357788999999999999987652            245788999999999999999999998532      26999999


Q ss_pred             cCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          729 LSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       729 ~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      +++|+|.++++...          .++.|++.|++|||+.   +++||||||+||+++.++.+||+|||+++.....   
T Consensus        80 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~---  153 (254)
T cd05083          80 MSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESK---KLVHRDLAARNILVSEDGVAKVSDFGLARVGSMG---  153 (254)
T ss_pred             CCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccccCcceEEEcCCCcEEECCCccceecccc---
Confidence            99999999886322          2356899999999997   9999999999999999999999999998754211   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                            ......+..|+|||++.+..++.++||||+|++++++.. ...++...  ...+.     ..........  ..
T Consensus       154 ------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~--~~~~~-----~~~~~~~~~~--~~  218 (254)
T cd05083         154 ------VDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM--SLKEV-----KECVEKGYRM--EP  218 (254)
T ss_pred             ------CCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC--CHHHH-----HHHHhCCCCC--CC
Confidence                  111234568999999998899999999999987777532 22211111  11111     1111111000  00


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .+..+..+.+++.+||+.+|++||+++++++.|++
T Consensus       219 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~l~~  253 (254)
T cd05083         219 PEGCPADVYVLMTSCWETEPKKRPSFHKLREKLEK  253 (254)
T ss_pred             CCcCCHHHHHHHHHHcCCChhhCcCHHHHHHHHcc
Confidence            11122223347889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.95  E-value=1.4e-28  Score=269.28  Aligned_cols=223  Identities=26%  Similarity=0.339  Sum_probs=173.0

Q ss_pred             hhCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .+..|.....||+|.|++|..++..                  ...+.+.+|+++|..++|||||+++.+....     .
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~-----~  128 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETE-----A  128 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeec-----c
Confidence            4568889999999999999988765                  1234588999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .+|+||||+.+|.+++|+..        .+.+..|+.+|++|+|++   .|||||||++|||++.++.+||+|||++..+
T Consensus       129 ~lylV~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k---~ivHrdLk~eNilL~~~mnikIaDfgfS~~~  205 (596)
T KOG0586|consen  129 TLYLVMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSK---NIVHRDLKAENILLDENMNIKIADFGFSTFF  205 (596)
T ss_pred             eeEEEEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhc---ceeccccchhhcccccccceeeeccccceee
Confidence            48999999999999999963        234467999999999998   8999999999999999999999999999877


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCch---hhhccChHHHHhhc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPEN---VLQVLDPELRQLMT  868 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~  868 (929)
                      ..       ......++|++.|.|||++.+..| ++++|+|+.|+++|.+.     .+.+|..   +.+.-++-++..+.
T Consensus       206 ~~-------~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV-----~GsLPFDG~~lk~Lr~rvl~gk~r  273 (596)
T KOG0586|consen  206 DY-------GLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALV-----EGSLPFDGQNLKELRPRVLRGKYR  273 (596)
T ss_pred             cc-------cccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeee-----ecccccCCcccccccchheeeeec
Confidence            42       223455799999999999999886 89999999998877654     4444431   11111222222111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                              .+..+..-.++++++.+..+|.+|++++++.+.
T Consensus       274 --------Ip~~ms~dce~lLrk~lvl~Pskr~~~dqim~~  306 (596)
T KOG0586|consen  274 --------IPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKD  306 (596)
T ss_pred             --------ccceeechhHHHHHHhhccCccccCCHHHhhhh
Confidence                    112233334457779999999999999998753

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.95  E-value=6.4e-29  Score=270.79  Aligned_cols=224  Identities=25%  Similarity=0.283  Sum_probs=162.8

Q ss_pred             CCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          664 SHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .....||+|+||.||++...                ...+.+.+|+..++.++||||+++++++...     ...++|||
T Consensus        25 ~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~-----~~~~lv~e   99 (292)
T cd06658          25 DSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVG-----DELWVVME   99 (292)
T ss_pred             hhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecC-----CeEEEEEe
Confidence            33467999999999988653                1234688999999999999999999998543     34899999


Q ss_pred             ecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCC
Q 002376          728 FLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~  800 (929)
                      |+++++|.+++...+       .++.+++.|++|||+.   +|+||||||+||++++++.+||+|||++.......    
T Consensus       100 ~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~----  172 (292)
T cd06658         100 FLEGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQ---GVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEV----  172 (292)
T ss_pred             CCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEcCCCCEEEccCcchhhccccc----
Confidence            999999999875332       3367899999999998   99999999999999999999999999987553211    


Q ss_pred             CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHH
Q 002376          801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDC  880 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  880 (929)
                        .......|+..|+|||+..+..++.++||||+|++++++.+...++.....  .+.+ ..+..........    ...
T Consensus       173 --~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~~-~~~~~~~~~~~~~----~~~  243 (292)
T cd06658         173 --PKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFNEPP--LQAM-RRIRDNLPPRVKD----SHK  243 (292)
T ss_pred             --ccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHH-HHHHhcCCCcccc----ccc
Confidence              112234689999999999888899999999999887776554433321111  0000 0111111110000    011


Q ss_pred             HHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          881 LITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       881 ~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....+++++.+|++.||++|||++|+++
T Consensus       244 ~~~~~~~li~~~l~~~P~~Rpt~~~il~  271 (292)
T cd06658         244 VSSVLRGFLDLMLVREPSQRATAQELLQ  271 (292)
T ss_pred             cCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            2223344777999999999999999986

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.95  E-value=5.5e-29  Score=272.78  Aligned_cols=243  Identities=21%  Similarity=0.264  Sum_probs=168.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...+.||+|+||.||+|+...                 ....+.+|++++++++||||+++++++...     ...+
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~-----~~~~   80 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE-----KSLT   80 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecC-----CeEE
Confidence            578889999999999999986641                 124577899999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||++ ++|.+++....         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus        81 lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~  156 (301)
T cd07873          81 LVFEYLD-KDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRR---KVLHRDLKPQNLLINERGELKLADFGLARAKSI  156 (301)
T ss_pred             EEEeccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHHHEEECCCCcEEECcCcchhccCC
Confidence            9999997 68888775422         2357899999999998   999999999999999999999999999975421


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-h---hhcc----ChHHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-V---LQVL----DPELR  864 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~---~~~~----~~~l~  864 (929)
                      ..      .......+++.|+|||++.+. .++.++||||+|++++++.++..++..... . .   ...+    +....
T Consensus       157 ~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  230 (301)
T cd07873         157 PT------KTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWP  230 (301)
T ss_pred             CC------CcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChhhch
Confidence            11      111223578999999988764 478999999999888887665544322111 0 0   0000    00000


Q ss_pred             Hhhcccc-------hhh----hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHHHHh
Q 002376          865 QLMTSNE-------SQT----IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQEILL  918 (929)
Q Consensus       865 ~~~~~~~-------~~~----~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~~~~  918 (929)
                      .......       ...    ......+...+++++.+|++.||.+|||++|+++  .++...+.+.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~~~~~~~  297 (301)
T cd07873         231 GILSNEEFKSYNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCLGERIH  297 (301)
T ss_pred             hhhccccccccccCccccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccccchhh
Confidence            0000000       000    0000112223445888999999999999999986  4555554444

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=5.6e-28  Score=259.04  Aligned_cols=230  Identities=22%  Similarity=0.291  Sum_probs=167.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||++....                ..+.+.+|++++++++||||+++++++...     ...+
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~~~~   76 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRR-----DKLW   76 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeC-----CEEE
Confidence            3578889999999999999987541                246788999999999999999999988543     3489


Q ss_pred             EEEEecCCCCcccccccc-c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE-R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~-~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++++|.+++... .        .+..|++.|++|||+.   +++||||||+||++++++.+||+|||.+.....
T Consensus        77 l~~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~  153 (262)
T cd06613          77 IVMEYCGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHET---GKIHRDIKGANILLTEDGDVKLADFGVSAQLTA  153 (262)
T ss_pred             EEEeCCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CceecCCChhhEEECCCCCEEECccccchhhhh
Confidence            999999999999988644 1        2367899999999998   999999999999999999999999999876532


Q ss_pred             ccCCCCCccccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ..      .......|+..|+|||++.+.   .++.++||||+|++++++.....++..... ..... ......+.   
T Consensus       154 ~~------~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~~~-~~~~~-~~~~~~~~---  222 (262)
T cd06613         154 TI------AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDLHP-MRALF-LISKSNFP---  222 (262)
T ss_pred             hh------hccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCCCH-HHHHH-HHHhccCC---
Confidence            11      112234688999999999877   789999999999887776554433322211 00000 00000000   


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ............-+++++.+||..+|++|||+.|++.
T Consensus       223 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  259 (262)
T cd06613         223 PPKLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQ  259 (262)
T ss_pred             CccccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence            0000001111222334788999999999999999874

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.6e-28  Score=261.61  Aligned_cols=225  Identities=24%  Similarity=0.317  Sum_probs=161.6

Q ss_pred             eeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecC
Q 002376          667 NLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS  730 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~  730 (929)
                      ++||+|+||.||++....                ..+.|.+|++++++++||||+++++++....     ..++||||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~-----~~~~v~e~~~   75 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQ-----PIYIVMELVP   75 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCC-----CeEEEEEcCC
Confidence            468999999999886541                2457889999999999999999999985433     4799999999


Q ss_pred             CCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          731 NGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       731 ~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      +++|.++++...         ..+.+++.|++|||+.   +++||||||+||++++++.+||+|||+++......    .
T Consensus        76 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~----~  148 (251)
T cd05041          76 GGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESK---NCIHRDLAARNCLVGENNVLKISDFGMSREEEGGI----Y  148 (251)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEehhhcCcceEEEcCCCcEEEeeccccccccCCc----c
Confidence            999999885321         2246789999999998   89999999999999999999999999998653111    0


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDC  880 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  880 (929)
                      ........++..|+|||++.+..++.++||||+|++.+++.. ...++.....       ...........  ....++.
T Consensus       149 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~p~~~~~~-------~~~~~~~~~~~--~~~~~~~  219 (251)
T cd05041         149 TVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDTPYPGMSN-------QQTRERIESGY--RMPAPQL  219 (251)
T ss_pred             eeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCCCCccCCH-------HHHHHHHhcCC--CCCCCcc
Confidence            011111234667999999998899999999999987777543 2222211111       01111111100  0001111


Q ss_pred             HHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          881 LITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       881 ~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .+..+.+++.+|++.+|++||++.|+++.|++
T Consensus       220 ~~~~~~~li~~~l~~~p~~Rp~~~ell~~l~~  251 (251)
T cd05041         220 CPEEIYRLMLQCWAYDPENRPSFSEIYNELQI  251 (251)
T ss_pred             CCHHHHHHHHHHhccChhhCcCHHHHHHHhhC
Confidence            22234448889999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=1.2e-28  Score=266.38  Aligned_cols=226  Identities=24%  Similarity=0.289  Sum_probs=167.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||.|+||.||+|+...                 ....+.+|+++++.++||||+++++++.+.     ...+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   75 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKG-----SKLW   75 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEEC-----CeEE
Confidence            367788899999999999987641                 234688999999999999999999988543     3589


Q ss_pred             EEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      +|+||+++++|.++++..+       ..+.|++.|++|||+.   +++||||||+||++++++.++++|||+++.+....
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~  152 (274)
T cd06609          76 IIMEYCGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEE---GKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM  152 (274)
T ss_pred             EEEEeeCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEcccccceeecccc
Confidence            9999999999999987542       3367899999999998   89999999999999999999999999998764221


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            .......|++.|+|||++.+..++.++||||+|++++++..+..++.....  .+... .+..    .......
T Consensus       153 ------~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~~~~~--~~~~~-~~~~----~~~~~~~  219 (274)
T cd06609         153 ------SKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLSDLHP--MRVLF-LIPK----NNPPSLE  219 (274)
T ss_pred             ------cccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcccCch--HHHHH-Hhhh----cCCCCCc
Confidence                  112334688999999999998999999999999888876555444322211  00000 0000    0000000


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ... ....+.+++.+||+.+|++||+++++++
T Consensus       220 ~~~-~~~~~~~~l~~~l~~~p~~Rpt~~~il~  250 (274)
T cd06609         220 GNK-FSKPFKDFVSLCLNKDPKERPSAKELLK  250 (274)
T ss_pred             ccc-cCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence            000 1222334777999999999999999975

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.95  E-value=8.4e-29  Score=274.59  Aligned_cols=176  Identities=17%  Similarity=0.136  Sum_probs=134.3

Q ss_pred             ceeeccc--CceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          666 ENLIGSG--SFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       666 ~~~iG~G--~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++||+|  +||+||++....                  ..+.+.+|+++++.++|||||+++++|...     ...++|
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~-----~~~~lv   77 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD-----NELWVV   77 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEEC-----CEEEEE
Confidence            4689999  688999987651                  123566799999999999999999998643     348999


Q ss_pred             EEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++|+|.+++...          ..++.|++.||+|||+.   +|+||||||+||+++.++.++++|||.+......
T Consensus        78 ~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~  154 (327)
T cd08227          78 TSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMINH  154 (327)
T ss_pred             EeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCChhhEEEecCCcEEEcccchhhccccc
Confidence            9999999999988532          12367899999999998   9999999999999999999999999876543211


Q ss_pred             cCC-CCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcchhHHhhh
Q 002376          796 VDN-QSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFNIVKWVES  849 (929)
Q Consensus       796 ~~~-~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~~~~~~~~  849 (929)
                      ... ...........++..|||||++.+  ..++.++||||+|++++++.....++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  211 (327)
T cd08227         155 GQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFK  211 (327)
T ss_pred             cccccccccccccccceecccChHHhhcccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence            100 000011122357788999999876  358999999999998888766555443

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=2.6e-28  Score=263.29  Aligned_cols=229  Identities=22%  Similarity=0.305  Sum_probs=162.8

Q ss_pred             CCCCceeecccCceeEEeccccC--------------------------cHHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG--------------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~--------------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      +|...+.||+|+||.||+|....                          ..+.+.+|+.++++++|||++++++++... 
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-   80 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTE-   80 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccC-
Confidence            46677899999999999986431                          013577899999999999999999998543 


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                          ...++||||+++|+|.++++...        .++.+++.|++|||+.   +++||||||+||++++++.+|++|||
T Consensus        81 ----~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~~~nil~~~~~~~~l~d~~  153 (272)
T cd06629          81 ----EYLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSK---GILHRDLKADNLLVDADGICKISDFG  153 (272)
T ss_pred             ----CceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhC---CeeecCCChhhEEEcCCCeEEEeecc
Confidence                34899999999999999886432        2357899999999997   99999999999999999999999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHH
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPEL  863 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  863 (929)
                      +++......    .........|+..|+|||++....  ++.++||||+|++++++.....++.....  ...+......
T Consensus       154 ~~~~~~~~~----~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~  229 (272)
T cd06629         154 ISKKSDDIY----DNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEEAIAAMFKLGNKRS  229 (272)
T ss_pred             ccccccccc----cccccccccCCccccCHHHhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcchHHHHHHhhcccc
Confidence            997543211    111123346899999999987655  89999999999877775544433321111  0111000000


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....      ......+...+++++.+||+.+|++||+++||++
T Consensus       230 ~~~~~------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  268 (272)
T cd06629         230 APPIP------PDVSMNLSPVALDFLNACFTINPDNRPTARELLQ  268 (272)
T ss_pred             CCcCC------ccccccCCHHHHHHHHHHhcCChhhCCCHHHHhh
Confidence            00000      0000112233344777999999999999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.95  E-value=1.8e-28  Score=264.12  Aligned_cols=229  Identities=22%  Similarity=0.315  Sum_probs=163.8

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------------cHHHHHHHHHHHHc-cCCccccceeeeccc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------------SWKSFIAECETLRN-VRHRNLVKLITSCSS  713 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------------~~~~~~~E~~~l~~-l~Hpniv~l~~~~~~  713 (929)
                      +|+..+.||+|+||.||+|....                           ..+++.+|+.++.+ ++||||+++++++.+
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            47778899999999999887642                           12346678888865 799999999999854


Q ss_pred             CCCCCcceEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCce
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA  781 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~  781 (929)
                      .     ...++||||+++++|.+++...            ..++.|++.|+.|||+.  .+++||||||+||++++++.+
T Consensus        81 ~-----~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~--~~i~H~dl~~~nil~~~~~~~  153 (269)
T cd08528          81 N-----DRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKE--KRIVHRDLTPNNIMLGEDDKV  153 (269)
T ss_pred             C-----CeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccC--CceeecCCCHHHEEECCCCcE
Confidence            3     3589999999999999887421            12356899999999963  179999999999999999999


Q ss_pred             EEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          782 KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       782 ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      ||+|||.+.......       ......|+..|+|||++.+..++.++||||+|++++++.....++....  ..... .
T Consensus       154 ~l~dfg~~~~~~~~~-------~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~--~~~~~-~  223 (269)
T cd08528         154 TITDFGLAKQKQPES-------KLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN--MLSLA-T  223 (269)
T ss_pred             EEecccceeeccccc-------ccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC--HHHHH-H
Confidence            999999998653211       1233468999999999999889999999999987777544333221111  10000 0


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      .+...    ..... ........+.+++.+||+.||++||++.|+..++++
T Consensus       224 ~~~~~----~~~~~-~~~~~~~~l~~li~~cl~~~p~~Rp~~~e~~~~~~~  269 (269)
T cd08528         224 KIVEA----VYEPL-PEGMYSEDVTDVITSCLTPDAEARPDIIQVSAMISD  269 (269)
T ss_pred             HHhhc----cCCcC-CcccCCHHHHHHHHHHCCCCCccCCCHHHHHHHhcC
Confidence            11110    00000 000112223347779999999999999999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.95  E-value=8.4e-28  Score=256.81  Aligned_cols=225  Identities=22%  Similarity=0.290  Sum_probs=164.8

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||.++..                  ...+++.+|++++++++||||+++++++.+.     ...+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~~~~   75 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDD-----NTLL   75 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecC-----CeEE
Confidence            4788899999999988776543                  1235688999999999999999999998643     3589


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++|+|.+++....          .++.+++.|++|||+.   +++||||||+||++++++.+||+|||.++...
T Consensus        76 ~~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~  152 (256)
T cd08221          76 IEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKA---GILHRDIKTLNIFLTKAGLIKLGDFGISKILG  152 (256)
T ss_pred             EEEEecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChHhEEEeCCCCEEECcCcceEEcc
Confidence            9999999999999986531          2356899999999998   89999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ....      ......|++.|+|||++.+..++.++||||+|++++++.....++...  ...+.............   
T Consensus       153 ~~~~------~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~~--~~~~~~~~~~~~~~~~~---  221 (256)
T cd08221         153 SEYS------MAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRTFDAT--NPLNLVVKIVQGNYTPV---  221 (256)
T ss_pred             cccc------cccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCCCCCC--CHHHHHHHHHcCCCCCC---
Confidence            3211      122346899999999998888999999999998877764433222111  11111111111100000   


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .    ......+.+++.+||+.+|++||++.|+++.
T Consensus       222 ~----~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~  253 (256)
T cd08221         222 V----SVYSSELISLVHSLLQQDPEKRPTADEVLDQ  253 (256)
T ss_pred             c----cccCHHHHHHHHHHcccCcccCCCHHHHhhC
Confidence            0    1111222337779999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=6.6e-28  Score=258.39  Aligned_cols=231  Identities=24%  Similarity=0.342  Sum_probs=167.7

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|...+.||+|+||.||++...              ...+++.+|+.++++++||||+++++++...     ...++|
T Consensus         5 ~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~~v   79 (261)
T cd05034           5 RESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEE-----EPIYIV   79 (261)
T ss_pred             hhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCccCHHHHHHHHHHHhhCCCCCEeeeeeeeecC-----CceEEE
Confidence            457888999999999999987653              1246789999999999999999999998543     347999


Q ss_pred             EEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++++|.++++...          .++.+++.|++|||+.   +++||||||+||++++++.+|++|||.++.+...
T Consensus        80 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~  156 (261)
T cd05034          80 TEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESR---NYIHRDLAARNILVGENLVCKIADFGLARLIEDD  156 (261)
T ss_pred             EeccCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcchheEEEcCCCCEEECccccceeccch
Confidence            99999999999986432          2356899999999998   8999999999999999999999999999865321


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      .     ........++..|+|||.+.+..++.++||||+|++++++.. ...++....  ..+..+. +......  ...
T Consensus       157 ~-----~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~--~~~~~~~-~~~~~~~--~~~  226 (261)
T cd05034         157 E-----YTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGMT--NREVLEQ-VERGYRM--PRP  226 (261)
T ss_pred             h-----hhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCCC--HHHHHHH-HHcCCCC--CCC
Confidence            1     011112234678999999998899999999999977766443 222221111  1111111 1110000  000


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ...+.    .+.+++.+|++.+|++||+++|+.+.|++
T Consensus       227 ~~~~~----~~~~~i~~~l~~~p~~Rp~~~~l~~~l~~  260 (261)
T cd05034         227 PNCPE----ELYDLMLQCWDKDPEERPTFEYLQSFLED  260 (261)
T ss_pred             CCCCH----HHHHHHHHHcccCcccCCCHHHHHHHHhc
Confidence            11112    23337779999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.95  E-value=8.9e-28  Score=259.25  Aligned_cols=235  Identities=21%  Similarity=0.306  Sum_probs=165.2

Q ss_pred             CCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC-cc
Q 002376          663 FSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN-ME  720 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~-~~  720 (929)
                      |+..+.||+|+||.||+|.+.                     ...+++.+|++++++++||||+++++++......+ ..
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            456788999999999998642                     11346789999999999999999999886543222 22


Q ss_pred             eEEEEEEecCCCCcccccccc--------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE--------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~--------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                      ..++++||+++|+|.+++...              ..++.|++.|++|||+.   +|+||||||+||++++++.+|++||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~nili~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHRDLAARNCMLNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeecccchhhEEEcCCCCEEECcc
Confidence            358899999999998776421              12357899999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      |.++.......    ........+++.|++||.+.+..++.++||||+|++.+++.. ...++.....       ..+..
T Consensus       158 g~~~~~~~~~~----~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~~-------~~~~~  226 (273)
T cd05074         158 GLSKKIYSGDY----YRQGCASKLPVKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVEN-------SEIYN  226 (273)
T ss_pred             cccccccCCcc----eecCCCccCchhhcCHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCCH-------HHHHH
Confidence            99986532110    011122345678999999998889999999999988777533 1111111110       11111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .......... ...+...+. +++.+||+.+|++||++.|+++.|+++
T Consensus       227 ~~~~~~~~~~-~~~~~~~~~-~l~~~~l~~~p~~Rps~~~~~~~l~~~  272 (273)
T cd05074         227 YLIKGNRLKQ-PPDCLEDVY-ELMCQCWSPEPKCRPSFQHLRDQLELI  272 (273)
T ss_pred             HHHcCCcCCC-CCCCCHHHH-HHHHHHcCCChhhCcCHHHHHHHHHhh
Confidence            1100000000 001122333 388899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.95  E-value=2.3e-28  Score=272.25  Aligned_cols=247  Identities=21%  Similarity=0.263  Sum_probs=170.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +++|+..+.||+|+||.||+|....                 ....+.+|+.++++++||||+++++++...........
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            4689999999999999999986531                 23457789999999999999999998765543344568


Q ss_pred             EEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||++ +++.++++...       .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~  159 (336)
T cd07849          84 YIVQELME-TDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTNCDLKICDFGLARIADPE  159 (336)
T ss_pred             EEEehhcc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEECCCCCEEECcccceeecccc
Confidence            99999996 58877765322       3467899999999998   9999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCC-----------------chhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLP-----------------ENVLQ  857 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~-----------------~~~~~  857 (929)
                      ..   .........||+.|||||++.+ ..++.++||||+|++++++.++..++....                 +....
T Consensus       160 ~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (336)
T cd07849         160 HD---HTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPGKDYLHQLNLILGVLGTPSQEDLNC  236 (336)
T ss_pred             cc---ccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHH
Confidence            11   1111233578999999998755 468999999999998888765543332111                 01111


Q ss_pred             ccChHHHHhhcccch-hhhhhh---HHHHHHHHHHhccccCCCCCCCCCHHHHHHH--HHhh
Q 002376          858 VLDPELRQLMTSNES-QTIQLH---DCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSS  913 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~  913 (929)
                      +.+............ ......   .....-+.+++.+||+.||++|||+.|+++.  ++..
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~  298 (336)
T cd07849         237 IISLRARNYIKSLPFKPKVPWNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQY  298 (336)
T ss_pred             hhchhhhhHHhhcCcCCcccHHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCcccccc
Confidence            111111111100000 000000   0011223348889999999999999999875  5544

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.95  E-value=5e-28  Score=260.12  Aligned_cols=234  Identities=24%  Similarity=0.283  Sum_probs=168.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||+|....                 ..+.+.+|++.++.++||||+++++.+...     ...+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVG-----DELW   75 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeC-----CEEE
Confidence            478889999999999999987531                 245788999999999999999999988543     3489


Q ss_pred             EEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +||||+++++|.++++...           ....|++.|++|||+.   +++||||||+||++++++.+|++|||++..+
T Consensus        76 iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~  152 (267)
T cd06610          76 LVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSN---GQIHRDIKAGNILLGEDGSVKIADFGVSASL  152 (267)
T ss_pred             EEEeccCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHhEEEcCCCCEEEcccchHHHh
Confidence            9999999999999986421           2356899999999998   9999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .......  ........|+..|+|||++... .++.++||||+|++++++..+..++...+.  .+........ .....
T Consensus       153 ~~~~~~~--~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~--~~~~~~~~~~-~~~~~  227 (267)
T cd06610         153 ADGGDRT--RKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKYPP--MKVLMLTLQN-DPPSL  227 (267)
T ss_pred             ccCcccc--ccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCccccCh--hhhHHHHhcC-CCCCc
Confidence            4321111  0122345789999999998877 789999999999887776555444332221  0101011110 00000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..... ...+...+.+++.+||+.||++||++.|+++
T Consensus       228 ~~~~~-~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~  263 (267)
T cd06610         228 ETGAD-YKKYSKSFRKMISLCLQKDPSKRPTAEELLK  263 (267)
T ss_pred             CCccc-cccccHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            00000 0012223334778999999999999999875

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.95  E-value=1.2e-27  Score=255.82  Aligned_cols=225  Identities=22%  Similarity=0.314  Sum_probs=164.9

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++....                  ..+.+.+|++++++++|||++++++.+...    ....+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~----~~~~~   76 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGE----DGLLY   76 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCC----CCEEE
Confidence            47888999999999999876541                  134678899999999999999999876432    23479


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++++|.++++...          .++.+++.|++|||+.   +++||||||+||++++++.+||+|||+++...
T Consensus        77 lv~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~di~p~nil~~~~~~~~l~df~~~~~~~  153 (257)
T cd08223          77 IVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEK---HILHRDLKTQNVFLTRTNIIKVGDLGIARVLE  153 (257)
T ss_pred             EEecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCchhEEEecCCcEEEecccceEEec
Confidence            9999999999999886421          3357899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...      .......|++.|+|||+..+..++.++||||+|++++++.....++....  ..+...........     
T Consensus       154 ~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~~--~~~~~~~~~~~~~~-----  220 (257)
T cd08223         154 NQC------DMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKHAFNAKD--MNSLVYRIIEGKLP-----  220 (257)
T ss_pred             ccC------CccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHhcCCC-----
Confidence            211      11233468999999999999999999999999988777554333222111  11111111111110     


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        .........+.+++.+|++.+|++||++.|+++
T Consensus       221 --~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  253 (257)
T cd08223         221 --PMPKDYSPELGELIATMLSKRPEKRPSVKSILR  253 (257)
T ss_pred             --CCccccCHHHHHHHHHHhccCcccCCCHHHHhc
Confidence              011112233444788999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=2.2e-28  Score=266.75  Aligned_cols=228  Identities=23%  Similarity=0.259  Sum_probs=167.7

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ++|+..+.||+|+||.||++...                ...+.+.+|+.++++++||||+++++++...     ...|+
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~-----~~~~l   93 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVG-----DELWV   93 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeC-----CcEEE
Confidence            57888899999999999998643                1235678899999999999999999998543     34899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |+||+++|+|.+++.+..       .++.+++.|++|||+.   +++|||+||+||+++.++.+||+|||++....... 
T Consensus        94 v~e~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~---gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~-  169 (293)
T cd06647          94 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ-  169 (293)
T ss_pred             EEecCCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CEeeccCCHHHEEEcCCCCEEEccCcceecccccc-
Confidence            999999999999886432       2356899999999998   99999999999999999999999999987553211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......|++.|+|||++.+..++.++||||+|++++++.....++..... ..++. . ...    ........
T Consensus       170 -----~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~~~~~-~~~~~-~-~~~----~~~~~~~~  237 (293)
T cd06647         170 -----SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNENP-LRALY-L-IAT----NGTPELQN  237 (293)
T ss_pred             -----cccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh-hhhee-e-hhc----CCCCCCCC
Confidence                 111234688999999999888899999999999877775544333321111 01100 0 000    00001111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .+.+...+++++.+||+.+|++||++++++..
T Consensus       238 ~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h  269 (293)
T cd06647         238 PEKLSAIFRDFLNRCLEMDVEKRGSAKELLQH  269 (293)
T ss_pred             ccccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            12233344558889999999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.95  E-value=2e-28  Score=262.66  Aligned_cols=229  Identities=25%  Similarity=0.317  Sum_probs=165.3

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++....                  ..+++.+|++++++++||||+++++++...   .....+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~---~~~~~~   77 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDR---SNQTLY   77 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecC---CCCEEE
Confidence            47778999999999999886531                  234678899999999999999999987642   234579


Q ss_pred             EEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCC--CCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDC--EVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~--~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      +||||+++++|.+++...            ..++.+++.|++|||..+  ..+++||||||+||++++++.+|++|||++
T Consensus        78 ~~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~  157 (265)
T cd08217          78 IVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA  157 (265)
T ss_pred             EEehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEeccccc
Confidence            999999999999988532            123578999999999332  238999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +......      .......|++.|+|||++.+..++.++|||++|++++++.....++.....  .     .+.+....
T Consensus       158 ~~~~~~~------~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~-----~~~~~~~~  224 (265)
T cd08217         158 KILGHDS------SFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCALSPPFTARNQ--L-----QLASKIKE  224 (265)
T ss_pred             ccccCCc------ccccccccCCCccChhhhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcCH--H-----HHHHHHhc
Confidence            8763221      111234689999999999998899999999999877775544333322211  1     11111110


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...  ...+......+.+++.+|++.+|++||++.+|++
T Consensus       225 ~~~--~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~  261 (265)
T cd08217         225 GKF--RRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQ  261 (265)
T ss_pred             CCC--CCCccccCHHHHHHHHHHccCCcccCCCHHHHhh
Confidence            000  0011112222334777999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.95  E-value=1.1e-27  Score=257.86  Aligned_cols=231  Identities=20%  Similarity=0.317  Sum_probs=167.4

Q ss_pred             CCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +|+..+.||+|+||.||++....                      ..+.+.+|++++++++||||+++++++.+.     
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----   75 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCED-----   75 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccC-----
Confidence            47778999999999999876431                      135688999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~  790 (929)
                      +..++||||+++++|.+++....        .++.|++.||+|||+.   +++||||||+||+++.++ .+||+|||.++
T Consensus        76 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~---~i~H~~i~~~nil~~~~~~~~~l~dfg~~~  152 (268)
T cd06630          76 SHFNLFVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHEN---QIIHRDVKGANLLIDSTGQRLRIADFGAAA  152 (268)
T ss_pred             CeEEEEEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccccccc
Confidence            34899999999999999886432        2357899999999998   999999999999998776 69999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  869 (929)
                      .+.......  ........|+..|+|||++.+..++.++|||++|++++++.....++..... ....    ........
T Consensus       153 ~~~~~~~~~--~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~----~~~~~~~~  226 (268)
T cd06630         153 RLAAKGTGA--GEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLA----LIFKIASA  226 (268)
T ss_pred             ccccccccC--CccccccccccceeCHhHhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCcchHH----HHHHHhcc
Confidence            764321111  1112234689999999999888899999999999888776655444322111 0000    01110000


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .  .....++....-+.+++.+|++.+|++||++.|++.
T Consensus       227 ~--~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~  263 (268)
T cd06630         227 T--TAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLK  263 (268)
T ss_pred             C--CCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhc
Confidence            0  011112223333444788999999999999999874

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.95  E-value=1.4e-28  Score=268.78  Aligned_cols=223  Identities=24%  Similarity=0.263  Sum_probs=161.6

Q ss_pred             ceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ...||+|+||.||++...                ...+.+.+|+.+++.++||||+++++++...     ...++||||+
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~-----~~~~iv~e~~  100 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVG-----EELWVLMEFL  100 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeC-----CeEEEEEecC
Confidence            457999999999998653                1245688999999999999999999998543     3489999999


Q ss_pred             CCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCc
Q 002376          730 SNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI  802 (929)
Q Consensus       730 ~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~  802 (929)
                      ++++|.+++....       .++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++......      
T Consensus       101 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~------  171 (297)
T cd06659         101 QGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQ---GVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV------  171 (297)
T ss_pred             CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHeEEccCCcEEEeechhHhhccccc------
Confidence            9999998775422       2367899999999998   99999999999999999999999999987553211      


Q ss_pred             cccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHH
Q 002376          803 SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLI  882 (929)
Q Consensus       803 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  882 (929)
                      .......|+..|+|||++.+..++.++||||+|++++++.....++..... . +.+ ..+..    .............
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-~-~~~-~~~~~----~~~~~~~~~~~~~  244 (297)
T cd06659         172 PKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFSDSP-V-QAM-KRLRD----SPPPKLKNAHKIS  244 (297)
T ss_pred             ccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-H-HHH-HHHhc----cCCCCccccCCCC
Confidence            112235789999999999988999999999999887776544333221111 0 000 00110    0000000000111


Q ss_pred             HHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          883 TIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       883 ~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ..+.+++.+|++.+|++||+++|+++.
T Consensus       245 ~~l~~~i~~~l~~~P~~Rps~~~ll~~  271 (297)
T cd06659         245 PVLRDFLERMLTREPQERATAQELLDH  271 (297)
T ss_pred             HHHHHHHHHHhcCCcccCcCHHHHhhC
Confidence            223347779999999999999999874

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.95  E-value=1.4e-27  Score=256.64  Aligned_cols=230  Identities=22%  Similarity=0.240  Sum_probs=164.7

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+|+..+.||+|+||.||+|....                     ..+.+.+|++++++++||||+++++++.+..   .
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~   78 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPM---E   78 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCC---C
Confidence            468889999999999999886531                     1246778999999999999999999875422   2


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..+++||||+++|+|.+++....        ..+.+++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        79 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          79 RTLSIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSN---MIVHRDIKGANILRDSVGNVKLGDFGASKR  155 (265)
T ss_pred             ceEEEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEecCCCCEEECcCccccc
Confidence            35789999999999999885432        2467899999999998   899999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ......   .........|+..|+|||++.+..++.++||||+|++++++.....++...+. ...     ........ 
T Consensus       156 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~-~~~-----~~~~~~~~-  225 (265)
T cd06652         156 LQTICL---SGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEFEA-MAA-----IFKIATQP-  225 (265)
T ss_pred             cccccc---cccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCccch-HHH-----HHHHhcCC-
Confidence            532111   11112334689999999999888899999999999877775544333322211 100     01100000 


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       .....+......+.+++.+|+. +|++||+++|+++
T Consensus       226 -~~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~  260 (265)
T cd06652         226 -TNPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLR  260 (265)
T ss_pred             -CCCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhc
Confidence             0011112233333346668884 8999999999875

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.95  E-value=4.8e-28  Score=271.47  Aligned_cols=177  Identities=25%  Similarity=0.288  Sum_probs=141.2

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~  719 (929)
                      ..++|+..+.||+|+||.||++....                  ..+.+.+|+.++++++||||+++++++..... ...
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            34689999999999999999987541                  12456789999999999999999998864332 122


Q ss_pred             ceEEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ...|+||||++ ++|.+++...      ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        94 ~~~~lv~e~~~-~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  169 (353)
T cd07850          94 QDVYLVMELMD-ANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAG  169 (353)
T ss_pred             CcEEEEEeccC-CCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEccCccceeCC
Confidence            35799999996 5887766422      23467899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHH
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ..       .......|+..|+|||++.+..++.++||||+|++++++..+..
T Consensus       170 ~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~  215 (353)
T cd07850         170 TS-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTV  215 (353)
T ss_pred             CC-------CCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCC
Confidence            21       11223468899999999999999999999999988887655443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.95  E-value=1.6e-28  Score=266.94  Aligned_cols=169  Identities=28%  Similarity=0.386  Sum_probs=135.3

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|+...                  ..+.+.+|+.++++++||||+++++++...     ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   75 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQE-----SRLY   75 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeC-----CeEE
Confidence            47778999999999999987541                  135678999999999999999999998643     3489


Q ss_pred             EEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +||||++ |+|.+++....           .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        76 ~v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~  151 (285)
T cd07861          76 LIFEFLS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSR---RVLHRDLKPQNLLIDNKGVIKLADFGLARAF  151 (285)
T ss_pred             EEEecCC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCCHHHEEEcCCCcEEECcccceeec
Confidence            9999997 68887765321           2367899999999998   9999999999999999999999999999754


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhH
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ...      ........+++.|+|||++.+. .++.++||||+|++++++.+..
T Consensus       152 ~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~  199 (285)
T cd07861         152 GIP------VRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKK  199 (285)
T ss_pred             CCC------cccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCC
Confidence            221      1111223578899999988654 4789999999998887765543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.95  E-value=1.2e-27  Score=255.55  Aligned_cols=224  Identities=23%  Similarity=0.300  Sum_probs=164.9

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+++...                  ..+++.+|+.++++++||||+++++++..     ....+
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~   75 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEE-----NGNLY   75 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecC-----CCeEE
Confidence            47788999999999999876531                  23468899999999999999999999854     34589


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++++|.++++...          .++.|++.|++|||+.   +++|+||+|+||+++.++.+||+|||++....
T Consensus        76 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~  152 (256)
T cd08218          76 IVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTIKLGDFGIARVLN  152 (256)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEEeeccceeecC
Confidence            9999999999998886422          2357899999999998   99999999999999999999999999997653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...      .......|++.|+|||+..+..++.++||||+|++++++.....++..  ....+.++....+....   .
T Consensus       153 ~~~------~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~~~~--~~~~~~~~~~~~~~~~~---~  221 (256)
T cd08218         153 STV------ELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHAFEA--GNMKNLVLKIIRGSYPP---V  221 (256)
T ss_pred             cch------hhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCCccC--CCHHHHHHHHhcCCCCC---C
Confidence            211      111234688999999999998999999999999877765443322211  11111111111111100   0


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          ......-+.+++.+||+.+|++||+|+||++
T Consensus       222 ----~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~  252 (256)
T cd08218         222 ----SSHYSYDLRNLVSQLFKRNPRDRPSVNSILE  252 (256)
T ss_pred             ----cccCCHHHHHHHHHHhhCChhhCcCHHHHhh
Confidence                0111222334777999999999999999986

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.95  E-value=6.2e-28  Score=261.10  Aligned_cols=223  Identities=24%  Similarity=0.283  Sum_probs=163.6

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .|+..+.||+|+||.||+|....                 ..+.+.+|++++++++||||+++++++...     ...++
T Consensus         5 ~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~l   79 (277)
T cd06642           5 LFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKG-----TKLWI   79 (277)
T ss_pred             HHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccC-----CceEE
Confidence            35556789999999999986531                 124688999999999999999999998543     34899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++++|.+++....       ..+.+++.|++|||+.   +++|+||||+||++++++.+|++|||+++.+.... 
T Consensus        80 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~-  155 (277)
T cd06642          80 IMEYLGGGSALDLLKPGPLEETYIATILREILKGLDYLHSE---RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ-  155 (277)
T ss_pred             EEEccCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcC---CeeccCCChheEEEeCCCCEEEccccccccccCcc-
Confidence            999999999999876432       2367899999999997   99999999999999999999999999998653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                           .......|+..|+|||++.+..++.++||||+|++++++..+..++..... ....    .+..    ..  ...
T Consensus       156 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~----~~~~----~~--~~~  220 (277)
T cd06642         156 -----IKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLF----LIPK----NS--PPT  220 (277)
T ss_pred             -----hhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCcccchhhHHh----hhhc----CC--CCC
Confidence                 112234688999999999998999999999999887776544333221111 1000    0000    00  000


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......-+.+++.+||+.+|++||+|.|+++
T Consensus       221 ~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  252 (277)
T cd06642         221 LEGQYSKPFKEFVEACLNKDPRFRPTAKELLK  252 (277)
T ss_pred             CCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence            00111222334778999999999999999987

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.95  E-value=1.7e-28  Score=266.63  Aligned_cols=169  Identities=26%  Similarity=0.414  Sum_probs=135.0

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|+...                  ..+.+.+|++++++++||||+++++++.+.     ...+
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~-----~~~~   75 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSD-----KKLT   75 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccC-----CceE
Confidence            47778999999999999987641                  123577899999999999999999998543     3489


Q ss_pred             EEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +|+||++ ++|.+++...         ..++.||++||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        76 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~  151 (284)
T cd07839          76 LVFEYCD-QDLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSH---NVLHRDLKPQNLLINKNGELKLADFGLARAFGI  151 (284)
T ss_pred             EEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEcCCCcEEECccchhhccCC
Confidence            9999997 5787776532         23367899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ..      .......+++.|+|||++.+.. ++.++||||+|++++++....
T Consensus       152 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~  197 (284)
T cd07839         152 PV------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAG  197 (284)
T ss_pred             CC------CCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcC
Confidence            11      1112236789999999987754 799999999998888765443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.94  E-value=3.2e-28  Score=264.60  Aligned_cols=173  Identities=26%  Similarity=0.368  Sum_probs=139.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+|+...                  ..+.+.+|++++++++|||++++++++..     ....
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~   75 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRR-----KRKL   75 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEee-----CCEE
Confidence            468888999999999999987641                  12457899999999999999999999854     3358


Q ss_pred             EEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||++++.+..+.+..        ..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++.....
T Consensus        76 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07847          76 HLVFEYCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKH---NCIHRDVKPENILITKQGQIKLCDFGFARILTG  152 (286)
T ss_pred             EEEEeccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCChhhEEEcCCCcEEECccccceecCC
Confidence            9999999998888776432        23467899999999997   999999999999999999999999999986632


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ...      ......++..|+|||++.+ ..++.++||||+|++++++.+...+
T Consensus       153 ~~~------~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p  200 (286)
T cd07847         153 PGD------DYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPL  200 (286)
T ss_pred             Ccc------cccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCC
Confidence            211      1123357889999999876 4579999999999888876655433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=7.1e-28  Score=242.02  Aligned_cols=217  Identities=26%  Similarity=0.283  Sum_probs=164.0

Q ss_pred             hCCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      -++|+..+++|+|.||+|..++-+..                   ...-..|-++++..+||.+..+...|     +...
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsF-----Qt~d  241 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSF-----QTQD  241 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhh-----ccCc
Confidence            35788899999999999987765521                   11233588899999999999988776     3445


Q ss_pred             eEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++|+||||+.||.|+-++...        |.+..+|..||.|||++   +||.||+|.+|.|+|.+|.+||+|||+++.-
T Consensus       242 rlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~---~ivYRDlKLENLlLDkDGHIKitDFGLCKE~  318 (516)
T KOG0690|consen  242 RLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSR---NIVYRDLKLENLLLDKDGHIKITDFGLCKEE  318 (516)
T ss_pred             eEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhC---CeeeeechhhhheeccCCceEeeecccchhc
Confidence            699999999999999988743        34467899999999998   9999999999999999999999999999842


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                            -........++|||.|.|||++....|+.++|-|..|+++|||.-+.+++..-.. .+.+.+-..-..      
T Consensus       319 ------I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~ed~k------  386 (516)
T KOG0690|consen  319 ------IKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILMEDLK------  386 (516)
T ss_pred             ------ccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHhhhcc------
Confidence                  1223345678999999999999999999999999999999988776666554433 333332221111      


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCC
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRI  901 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP  901 (929)
                       .+-...+....    +....+..||.+|-
T Consensus       387 -FPr~ls~eAkt----LLsGLL~kdP~kRL  411 (516)
T KOG0690|consen  387 -FPRTLSPEAKT----LLSGLLKKDPKKRL  411 (516)
T ss_pred             -CCccCCHHHHH----HHHHHhhcChHhhc
Confidence             11111122233    44477889999995

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5.3e-28  Score=266.97  Aligned_cols=230  Identities=24%  Similarity=0.262  Sum_probs=165.5

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||++....                   ..+.+.+|+++++.++||||+++++++..     ...
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~   75 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQT-----ETY   75 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeec-----CCE
Confidence            368888999999999999987641                   23457889999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .++||||+++++|.+++....          .++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++..
T Consensus        76 ~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~~l~dfg~~~~  152 (316)
T cd05574          76 LCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLL---GIVYRDLKPENILLHESGHIMLSDFDLSKQ  152 (316)
T ss_pred             EEEEEEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChHHeEEcCCCCEEEeecchhhc
Confidence            899999999999999886431          1256899999999998   999999999999999999999999999876


Q ss_pred             cccccCCCC-----------------------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          792 LLERVDNQS-----------------------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       792 ~~~~~~~~~-----------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .........                       .........||..|+|||++.+..++.++||||+|++++++.....++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf  232 (316)
T cd05574         153 SDVEPPPVSKALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPF  232 (316)
T ss_pred             ccccccccccccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCC
Confidence            532111000                       000112357899999999999999999999999998877765544443


Q ss_pred             hcCCc--hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC----HHHHHH
Q 002376          849 SNLPE--NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG----IREALR  908 (929)
Q Consensus       849 ~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs----~~ev~~  908 (929)
                      .....  ...++.+..        ....  ....+...+.+++.+|++.||++||+    ++|++.
T Consensus       233 ~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~  288 (316)
T cd05574         233 KGSNRDETFSNILKKE--------VTFP--GSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQ  288 (316)
T ss_pred             CCCchHHHHHHHhcCC--------ccCC--CccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHc
Confidence            22211  111111110        0000  00002223334777999999999999    555554

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=5.2e-29  Score=242.15  Aligned_cols=174  Identities=25%  Similarity=0.435  Sum_probs=138.1

Q ss_pred             CCCCceeecccCceeEEeccccCcH------------------HHHHHHHHHHHccCCccccceeeecccCCCC---Ccc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITSCSSLDSK---NME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~~------------------~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~---~~~  720 (929)
                      .|....+||+|.||+||+|+.....                  ....+|+.++..++|+|++.+++.|.+.+..   ...
T Consensus        18 ~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~   97 (376)
T KOG0669|consen   18 KYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRA   97 (376)
T ss_pred             HHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccc
Confidence            4555678999999999999877332                  2345899999999999999999999876543   234


Q ss_pred             eEEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .+|+||++|+. +|.-.+...         ++...++..||.|+|+.   .|+|||+||+|+||+.+|.+||+|||+||.
T Consensus        98 t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~---kilHRDmKaaNvLIt~dgilklADFGlar~  173 (376)
T KOG0669|consen   98 TFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRN---KILHRDMKAANVLITKDGILKLADFGLARA  173 (376)
T ss_pred             eeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHh---hHHhhcccHhhEEEcCCceEEeeccccccc
Confidence            58999999975 777666533         23356789999999998   899999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEF  841 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~  841 (929)
                      +........  ...+..+-|.+|++||.+.|.+ |+++.|||..||++.++
T Consensus       174 fs~~~n~~k--prytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeM  222 (376)
T KOG0669|consen  174 FSTSKNVVK--PRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEM  222 (376)
T ss_pred             eecccccCC--CCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHH
Confidence            753322211  2234556799999999998865 89999999999987664

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.94  E-value=2.5e-28  Score=262.31  Aligned_cols=229  Identities=19%  Similarity=0.285  Sum_probs=165.6

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||++....                 ..+++.+|++++++++||||+++++++...     ...+
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----~~~~   75 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNN-----GDIS   75 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecC-----CEEE
Confidence            357778899999999999987651                 235688999999999999999999998543     4589


Q ss_pred             EEEEecCCCCcccccccc-c--------cccccHHHHHHHhhh-CCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE-R--------KNELDITSALDYLHN-DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~-~--------~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+||+++++|.+++... .        .++.+++.|++|||+ .   +++||||||+||++++++.+||+|||.+....
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~  152 (265)
T cd06605          76 ICMEYMDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKH---KIIHRDVKPSNILVNSRGQIKLCDFGVSGQLV  152 (265)
T ss_pred             EEEEecCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCC---CeecCCCCHHHEEECCCCCEEEeecccchhhH
Confidence            999999999999998743 1        235789999999999 6   99999999999999999999999999987653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...        .....|+..|+|||++.+..++.++||||+|++++++.....++........... ..+...... ...
T Consensus       153 ~~~--------~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~~~~~~-~~~~~~~~~-~~~  222 (265)
T cd06605         153 NSL--------AKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPPENDPPDGIF-ELLQYIVNE-PPP  222 (265)
T ss_pred             HHH--------hhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCccccccccHH-HHHHHHhcC-CCC
Confidence            211        1115788999999999999999999999999877775544333322210000000 011111110 000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...... ....+.+++.+||..||++|||+.|++.
T Consensus       223 ~~~~~~-~~~~~~~li~~~l~~~p~~Rpt~~~ll~  256 (265)
T cd06605         223 RLPSGK-FSPDFQDFVNLCLIKDPRERPSYKELLE  256 (265)
T ss_pred             CCChhh-cCHHHHHHHHHHcCCCchhCcCHHHHhh
Confidence            000000 2222334777999999999999999874

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.94  E-value=2e-28  Score=266.25  Aligned_cols=170  Identities=28%  Similarity=0.430  Sum_probs=137.9

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+|.+..                  ..+.+.+|+++++.++||||+++++++..     ....
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~   75 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRR-----KKRL   75 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhccc-----CCeE
Confidence            468888999999999999988641                  13467889999999999999999999853     3458


Q ss_pred             EEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||++++++.++....        ..++.||+.|++|||+.   +++|||+||+||++++++.+||+|||+++.+..
T Consensus        76 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~  152 (286)
T cd07846          76 YLVFEFVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAA  152 (286)
T ss_pred             EEEEecCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEECCCCcEEEEeeeeeeeccC
Confidence            9999999999888776432        13367899999999998   999999999999999999999999999886532


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ..      .......|+..|+|||++.+. .++.++||||+|++++++.++
T Consensus       153 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g  197 (286)
T cd07846         153 PG------EVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTG  197 (286)
T ss_pred             Cc------cccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcC
Confidence            21      112234678999999998764 478999999999888776554

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.94  E-value=8e-28  Score=262.09  Aligned_cols=220  Identities=25%  Similarity=0.309  Sum_probs=163.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||++....                   ..+.+.+|++++++++||||+++++++...     ..
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~   75 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDD-----SN   75 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcC-----Ce
Confidence            468888999999999999887641                   234577899999999999999999998543     34


Q ss_pred             EEEEEEecCCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+++|+|.++++....        ++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        76 ~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~---~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~  152 (290)
T cd05580          76 LYLVMEYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSL---DIVYRDLKPENLLLDSDGYIKITDFGFAKRVK  152 (290)
T ss_pred             EEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEeeCCCccccC
Confidence            8999999999999999864332        357899999999997   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..         .....|++.|+|||.+.+..++.++||||+|++++++.....++.....  .+.    .......... 
T Consensus       153 ~~---------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~----~~~~~~~~~~-  216 (290)
T cd05580         153 GR---------TYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDDNP--IQI----YEKILEGKVR-  216 (290)
T ss_pred             CC---------CCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HHH----HHHHhcCCcc-
Confidence            21         2234689999999999888899999999999877776554443322111  000    0000000000 


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREAL  907 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~  907 (929)
                         .+.....-+++++.+||+.||++||     +++|++
T Consensus       217 ---~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~  252 (290)
T cd05580         217 ---FPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIK  252 (290)
T ss_pred             ---CCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHH
Confidence               0111122233367799999999999     666665

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.94  E-value=7e-28  Score=262.22  Aligned_cols=173  Identities=27%  Similarity=0.373  Sum_probs=140.0

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+|....                  ..+.+.+|++++++++||||+++++++...     ...
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~   75 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRK-----GRL   75 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEEC-----CEE
Confidence            368888999999999999987641                  134688999999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||++++.+..+.....        .++.+|+.|++|||+.   +++|||+||+||++++++.+||+|||+++....
T Consensus        76 ~iv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~  152 (288)
T cd07833          76 YLVFEYVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSH---NIIHRDIKPENILVSESGVLKLCDFGFARALRA  152 (288)
T ss_pred             EEEEecCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEEeeecccccCC
Confidence            99999999877766554221        2367899999999998   999999999999999999999999999987643


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ...     .......++..|+|||++.+. .++.++||||+|++++++.....
T Consensus       153 ~~~-----~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~  200 (288)
T cd07833         153 RPA-----SPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEP  200 (288)
T ss_pred             Ccc-----ccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCC
Confidence            211     112234688999999999888 78999999999988877655443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.94  E-value=3.8e-28  Score=264.85  Aligned_cols=174  Identities=25%  Similarity=0.328  Sum_probs=137.1

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++++|...+.||+|+||.||+|....                 ....+.+|+.+++.++|+||+++++++...     ..
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~-----~~   77 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTK-----ET   77 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecC-----Ce
Confidence            46789999999999999999986531                 123577899999999999999999998543     34


Q ss_pred             EEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||++ +++.+++...         +.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        78 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~  153 (291)
T cd07870          78 LTFVFEYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQ---HILHRDLKPQNLLISYLGELKLADFGLARAK  153 (291)
T ss_pred             EEEEEeccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChHHEEEcCCCcEEEecccccccc
Confidence            899999995 6776665421         22367899999999998   9999999999999999999999999999754


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ....      .......+++.|+|||++.+. .++.++||||+|++++++.....+
T Consensus       154 ~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~  203 (291)
T cd07870         154 SIPS------QTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPA  203 (291)
T ss_pred             CCCC------CCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            2211      111223578999999998764 478999999999887776554433

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.94  E-value=1.6e-27  Score=257.94  Aligned_cols=225  Identities=24%  Similarity=0.297  Sum_probs=165.6

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .|+..+.||+|+||.||+|....                 ..+.+.+|++++++++||||+++++++...     ...++
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~l   79 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKG-----TKLWI   79 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-----CEEEE
Confidence            56677889999999999987541                 134688899999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++|+|.+++....       ..+.+++.|++|+|+.   +++|+||+|+||+++.++.++++|||+++...... 
T Consensus        80 v~e~~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~-  155 (277)
T cd06640          80 IMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSE---KKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ-  155 (277)
T ss_pred             EEecCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCcCCChhhEEEcCCCCEEEcccccceeccCCc-
Confidence            999999999999886432       2356899999999998   99999999999999999999999999997653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......++..|+|||++.+..++.++||||+|++++++.....++.....  .+     .........  ....
T Consensus       156 -----~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~--~~-----~~~~~~~~~--~~~~  221 (277)
T cd06640         156 -----IKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHP--MR-----VLFLIPKNN--PPTL  221 (277)
T ss_pred             -----cccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCCCCcCh--Hh-----HhhhhhcCC--CCCC
Confidence                 112234688899999999988999999999999887776544333221110  00     000000000  0111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ......-+.+++.+||+.+|++||++.|+++.
T Consensus       222 ~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  253 (277)
T cd06640         222 TGEFSKPFKEFIDACLNKDPSFRPTAKELLKH  253 (277)
T ss_pred             chhhhHHHHHHHHHHcccCcccCcCHHHHHhC
Confidence            11122233348889999999999999999754

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.94  E-value=2.4e-27  Score=253.20  Aligned_cols=223  Identities=23%  Similarity=0.354  Sum_probs=162.3

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++...                  ...+.+.+|++++++++||||+++++++..     ....+
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~   75 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLE-----DKALM   75 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEec-----CCEEE
Confidence            4778899999999999987653                  124578899999999999999999998743     33589


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfGla~~~  792 (929)
                      +||||+++++|.+++....          .++.+++.|++|||+.   +++||||||+||+++++ +.+|++|||+++..
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~  152 (256)
T cd08220          76 IVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTK---LILHRDLKTQNILLDKHKMVVKIGDFGISKIL  152 (256)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEEccCCCceec
Confidence            9999999999999986432          2246899999999998   99999999999999855 46899999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       .......|+..|+|||++.+..++.++||||+|++++++.....++....  ...........    ...
T Consensus       153 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~--~~~~~~~~~~~----~~~  219 (256)
T cd08220         153 SSK-------SKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFEAAN--LPALVLKIMSG----TFA  219 (256)
T ss_pred             CCC-------ccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcccCc--hHHHHHHHHhc----CCC
Confidence            321       11123468899999999998889999999999987777554433322111  11111010100    000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         +..+....-+++++.+||+.+|++|||++|+++
T Consensus       220 ---~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~  252 (256)
T cd08220         220 ---PISDRYSPDLRQLILSMLNLDPSKRPQLSQIMA  252 (256)
T ss_pred             ---CCCCCcCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence               001111222334777999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.94  E-value=1.1e-27  Score=263.35  Aligned_cols=221  Identities=27%  Similarity=0.338  Sum_probs=158.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +.|+..+.||+|+||.||+|....                   ..+++.+|+++++.++||||++++++|...+     .
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~-----~   89 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREH-----T   89 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCC-----e
Confidence            458888999999999999986531                   1246889999999999999999999996533     3


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||++ |++.+++....         .++.|++.||.|||+.   +|+||||+|+||++++++.+||+|||+++..
T Consensus        90 ~~lv~e~~~-g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~  165 (307)
T cd06607          90 AWLVMEYCL-GSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSH---ERIHRDIKAGNILLTEPGTVKLADFGSASLV  165 (307)
T ss_pred             EEEEHHhhC-CCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEECCCCCEEEeecCcceec
Confidence            799999996 57766554211         2357899999999998   9999999999999999999999999998754


Q ss_pred             ccccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ..          .....|+..|+|||++.   .+.++.++||||+|++++++..+..++..... . .    ..... ..
T Consensus       166 ~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~~~-~-~----~~~~~-~~  228 (307)
T cd06607         166 SP----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-M-S----ALYHI-AQ  228 (307)
T ss_pred             CC----------CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCccH-H-H----HHHHH-hc
Confidence            21          12346788999999874   45689999999999887775544322211110 0 0    00000 00


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........ ......+.+++.+||+.+|++||+|.+++.
T Consensus       229 ~~~~~~~~-~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  266 (307)
T cd06607         229 NDSPTLSS-NDWSDYFRNFVDSCLQKIPQDRPSSEELLK  266 (307)
T ss_pred             CCCCCCCc-hhhCHHHHHHHHHHhcCChhhCcCHHHHhc
Confidence            00000000 111222334778999999999999999986

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.94  E-value=8.5e-28  Score=267.40  Aligned_cols=242  Identities=21%  Similarity=0.277  Sum_probs=167.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|....                  ..+.+.+|+.++++++||||+++++++.... .....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~~   82 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPG-ADFKD   82 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccC-CCCce
Confidence            3688889999999999999886541                  2346778999999999999999999876533 23456


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+. |+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        83 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~  158 (334)
T cd07855          83 VYVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSA---NVIHRDLKPSNLLVNEDCELRIGDFGMARGLS  158 (334)
T ss_pred             EEEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEecccccceeec
Confidence            899999995 68988875332        2357899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc----------------h-h
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE----------------N-V  855 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~----------------~-~  855 (929)
                      .....  .........|+..|+|||++.+ ..++.++||||+|++++++.....++.....                . .
T Consensus       159 ~~~~~--~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~~~~~~~~~~~~~g~~~~~~~  236 (334)
T cd07855         159 SSPTE--HKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKNYVHQLKLILSVLGSPSEEVL  236 (334)
T ss_pred             ccCcC--CCcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCCCChHHHHHHHHHHhCCChhHhh
Confidence            22111  1111233478999999998765 4589999999999988887655544321110                0 0


Q ss_pred             hhccChHHHHhhcccchh-hhh---hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          856 LQVLDPELRQLMTSNESQ-TIQ---LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....+..+.......... ...   .......-+.+++.+|++.+|++||+++|++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~  293 (334)
T cd07855         237 NRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLLSQMLQFDPEERITVEQALQ  293 (334)
T ss_pred             hhhchhhHHHHHhhcccCCCCCHHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            011111111110000000 000   00011223344777999999999999999876

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.94  E-value=6.9e-28  Score=257.84  Aligned_cols=223  Identities=26%  Similarity=0.273  Sum_probs=164.5

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +|+..+.||+|+||.||+++...                   ..+.+.+|++++++++||||+++++++..     ....
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~   75 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQD-----EENM   75 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcC-----CCeE
Confidence            47788999999999999987651                   23578899999999999999999998853     3358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||+++++|.+++....        .++.++++||+|||+.   +++|+||||+||++++++.+||+|||.+.....
T Consensus        76 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~  152 (258)
T cd05578          76 YLVVDLLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSK---GIIHRDIKPDNILLDEQGHVHITDFNIATKVTP  152 (258)
T ss_pred             EEEEeCCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEEcCCCCEEEeecccccccCC
Confidence            99999999999999886441        2367899999999998   899999999999999999999999999876532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc-ccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT-SNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~  873 (929)
                      ..       ......|+..|+|||++.+..++.++||||+|++++++..+..++........    ..+..... .....
T Consensus       153 ~~-------~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~----~~~~~~~~~~~~~~  221 (258)
T cd05578         153 DT-------LTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIR----DQIRAKQETADVLY  221 (258)
T ss_pred             Cc-------cccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCCCCCCccHH----HHHHHHhccccccC
Confidence            11       12234688899999999988899999999999877776554444332221100    11111111 01111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCH--HHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGI--REAL  907 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~--~ev~  907 (929)
                      .    ...+..+.+++.+||+.||++||++  +|+.
T Consensus       222 ~----~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~  253 (258)
T cd05578         222 P----ATWSTEAIDAINKLLERDPQKRLGDNLKDLK  253 (258)
T ss_pred             c----ccCcHHHHHHHHHHccCChhHcCCccHHHHh
Confidence            1    1122233347779999999999999  5543

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.94  E-value=2.7e-27  Score=267.15  Aligned_cols=241  Identities=22%  Similarity=0.270  Sum_probs=177.6

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      +.++.+...++-|.+.++||+|.+|+||+++..               ...++...|.++++.. +|||++.++|++.-.
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~hpnv~~fyg~~~k~   88 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSHHPNVATFYGAFIKK   88 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccCCCCcceEEEEEEEe
Confidence            345555667788999999999999999998765               2346777888888887 699999999999887


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      +....+.+|+|||||.+||..|+++...          .+..++++|+.+||..   .++|||||-.|||++.++.+|+.
T Consensus        89 ~~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~n---kviHRDikG~NiLLT~e~~VKLv  165 (953)
T KOG0587|consen   89 DPGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNN---KVIHRDIKGQNVLLTENAEVKLV  165 (953)
T ss_pred             cCCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhc---ceeeecccCceEEEeccCcEEEe
Confidence            7777788999999999999999887432          2356789999999998   89999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCC-----CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-----RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL  859 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~  859 (929)
                      |||++..+..      .......++||+.|||||++...     .|+.++|+||+|+++.|+.-+.-+....- ++..  
T Consensus       166 DFGvSaQlds------T~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~DmH-Pmra--  236 (953)
T KOG0587|consen  166 DFGVSAQLDS------TVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDMH-PMRA--  236 (953)
T ss_pred             eeeeeeeeec------ccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCcc-hhhh--
Confidence            9999987742      22334557899999999998754     38899999999998888643332221110 0000  


Q ss_pred             ChHHHHhhcccchhhhhhhHH-HHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDC-LITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         +.. .+..+++....++. ..++.. ++..|+..|-++||++.++++
T Consensus       237 ---LF~-IpRNPPPkLkrp~kWs~~Fnd-FIs~cL~Kd~e~RP~~~~ll~  281 (953)
T KOG0587|consen  237 ---LFL-IPRNPPPKLKRPKKWSKKFND-FISTCLVKDYEQRPSTEELLK  281 (953)
T ss_pred             ---hcc-CCCCCCccccchhhHHHHHHH-HHHHHHhhccccCcchhhhcc
Confidence               000 00011111110111 122333 777999999999999988764

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.94  E-value=6.8e-28  Score=267.02  Aligned_cols=165  Identities=30%  Similarity=0.401  Sum_probs=137.1

Q ss_pred             CCCCceeecccCceeEEeccccCc---------------HHHHHHHHHHHHccC-Cc-----cccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGS---------------WKSFIAECETLRNVR-HR-----NLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~~~E~~~l~~l~-Hp-----niv~l~~~~~~~~~~~~~  720 (929)
                      +|.+.++||+|+||.|.||++.++               ..+-..|+.+|..++ |.     |+|++++||...+     
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~-----  261 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRN-----  261 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccc-----
Confidence            788899999999999999988742               234456999999996 43     7999999996544     


Q ss_pred             eEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC--ceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--TAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~--~~ki~DfGl  788 (929)
                      +.|||+|.++ .+|+++++..+          .++.||+.||.+||..   +|||+||||+|||+.+-.  .+||+|||.
T Consensus       262 HlciVfELL~-~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l---~IIHcDLKPENILL~~~~r~~vKVIDFGS  337 (586)
T KOG0667|consen  262 HLCIVFELLS-TNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHEL---GIIHCDLKPENILLKDPKRSRIKVIDFGS  337 (586)
T ss_pred             ceeeeehhhh-hhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCChhheeeccCCcCceeEEeccc
Confidence            4899999995 59999998543          4578999999999998   999999999999997544  799999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      |....+.         ....+-+..|+|||++.|.+|+.+.||||+||++.|+.++
T Consensus       338 Sc~~~q~---------vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG  384 (586)
T KOG0667|consen  338 SCFESQR---------VYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTG  384 (586)
T ss_pred             ccccCCc---------ceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcC
Confidence            9865321         1134568899999999999999999999999999887655

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.94  E-value=1.1e-27  Score=260.22  Aligned_cols=226  Identities=24%  Similarity=0.261  Sum_probs=163.4

Q ss_pred             CCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .|...+.||+|++|.||++....                ..+.+.+|+.+++.++||||+++++++...     .+.++|
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~-----~~~~~v   94 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVG-----DELWVV   94 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcC-----CeEEEE
Confidence            34456799999999999987541                234678999999999999999999988543     347999


Q ss_pred             EEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          726 YEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      +||+++++|.+++...+       .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++......  
T Consensus        95 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~--  169 (285)
T cd06648          95 MEFLEGGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQ---GVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEV--  169 (285)
T ss_pred             EeccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChhhEEEcCCCcEEEcccccchhhccCC--
Confidence            99999999999886532       2467899999999998   99999999999999999999999999987553211  


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                          .......|++.|+|||+..+..++.++||||+|++++++.....++....  ..+.. ..+...    ........
T Consensus       170 ----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~~~--~~~~~-~~~~~~----~~~~~~~~  238 (285)
T cd06648         170 ----PRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFNEP--PLQAM-KRIRDN----LPPKLKNL  238 (285)
T ss_pred             ----cccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcCCC--HHHHH-HHHHhc----CCCCCccc
Confidence                11123468999999999998889999999999987777554433221111  00000 011110    00000000


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......+.+++.+||+.+|++||++.|+++
T Consensus       239 ~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  268 (285)
T cd06648         239 HKVSPRLRSFLDRMLVRDPAQRATAAELLN  268 (285)
T ss_pred             ccCCHHHHHHHHHHcccChhhCcCHHHHcc
Confidence            001122334777999999999999999985

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.94  E-value=7.3e-28  Score=263.54  Aligned_cols=168  Identities=23%  Similarity=0.361  Sum_probs=135.8

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||.||+|....                     ....+..|++++++++||||+++++++.+     ..
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~   75 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGH-----KS   75 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeec-----CC
Confidence            47778899999999999987541                     12346689999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+ +|+|.++++...         .++.||++||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        76 ~~~lv~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nill~~~~~~~l~dfg~~~~  151 (298)
T cd07841          76 NINLVFEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSN---WILHRDLKPNNLLIASDGVLKLADFGLARS  151 (298)
T ss_pred             EEEEEEccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecCCChhhEEEcCCCCEEEccceeeee
Confidence            589999999 899999986433         2367899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchh
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      .....      .......+++.|+|||++.+ ..++.++||||+|++++++...
T Consensus       152 ~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g  199 (298)
T cd07841         152 FGSPN------RKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLR  199 (298)
T ss_pred             ccCCC------ccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcC
Confidence            53211      11122356888999998865 4579999999999888776544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.94  E-value=9.1e-28  Score=266.20  Aligned_cols=178  Identities=28%  Similarity=0.346  Sum_probs=142.9

Q ss_pred             CCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcceEEEE
Q 002376          664 SHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFLALV  725 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~~lV  725 (929)
                      ...+.||+||||.||+|+.+.                 ..+...+|+++|++++|||||+++++=.+... --.....+|
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            345789999999999999662                 23456689999999999999999987533220 003457899


Q ss_pred             EEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec--CCC--ceEEecccccc
Q 002376          726 YEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD--EEM--TAKVGDFGLAR  790 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~--~~~--~~ki~DfGla~  790 (929)
                      ||||++|||+..+.+..           ....+++.||.|||++   +|+||||||.||++-  ++|  ..||+|||.||
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLREN---GIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHc---CceeccCCCCcEEEeecCCCceEEeeecccccc
Confidence            99999999999997422           1245788999999988   999999999999983  334  57999999999


Q ss_pred             ccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcC
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNL  851 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~  851 (929)
                      .+.+.       .....++||..|.+||++.. +.|+..+|-||+|+++|+..++..++...
T Consensus       173 el~d~-------s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  173 ELDDN-------SLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             cCCCC-------CeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence            77432       24566899999999999984 88999999999999999988888877544

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.94  E-value=1.5e-27  Score=260.67  Aligned_cols=238  Identities=21%  Similarity=0.267  Sum_probs=163.2

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|....                  ..+.+.+|+.++++++ ||||+++++++...+......
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            468889999999999999987641                  1246788999999995 699999999987654434445


Q ss_pred             EEEEEEecCCCCccccccccc-------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEeccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFG  787 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfG  787 (929)
                      .|+||||+++ +|.+++....             .++.||+.||+|||+.   +|+||||||+||+++. ++.+||+|||
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~~~nil~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHRDLKPQNLLVDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEecCCCeEEEeecc
Confidence            7999999985 8888765321             2357899999999998   9999999999999998 8899999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhcc----C
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVL----D  860 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~----~  860 (929)
                      +++......      .......+++.|+|||++.+ ..++.++||||+|++++++.....++....+  ...+++    +
T Consensus       157 ~~~~~~~~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~  230 (295)
T cd07837         157 LGRAFSIPV------KSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDSELQQLLHIFKLLGT  230 (295)
T ss_pred             cceecCCCc------cccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHhCC
Confidence            988652210      11122357889999998865 4579999999999888876555443322211  000000    0


Q ss_pred             hH------H-----HHhhcccchhhh-hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 PE------L-----RQLMTSNESQTI-QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ~~------l-----~~~~~~~~~~~~-~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.      .     ............ .....+...+.+++.+|+++||++||+++|++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~  290 (295)
T cd07837         231 PTEQVWPGVSKLRDWHEFPQWKPQDLSRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALT  290 (295)
T ss_pred             CChhhCcchhhccchhhcCcccchhHHHhccccCHHHHHHHHHHccCChhhcCCHHHHhc
Confidence            00      0     000000000000 000112222334888999999999999999874

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-28  Score=240.28  Aligned_cols=222  Identities=22%  Similarity=0.242  Sum_probs=151.7

Q ss_pred             ceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEEE
Q 002376          666 ENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      ...||.|+.|.|++++...                 ..+++.+.+.++.+.+ .|.||+.+|||.....     +++.||
T Consensus        97 l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~d-----V~IcMe  171 (391)
T KOG0983|consen   97 LGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTD-----VFICME  171 (391)
T ss_pred             HHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCch-----HHHHHH
Confidence            4569999999999987662                 2355667777766665 8999999999976433     788899


Q ss_pred             ecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          728 FLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       728 ~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      .|. .-+...++..         .+....+..||.||...+  +|||||+||+|||+|+.|.+|+||||.+..+....  
T Consensus       172 lMs-~C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH--~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSk--  246 (391)
T KOG0983|consen  172 LMS-TCAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSK--  246 (391)
T ss_pred             HHH-HHHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhc--ceeecccCccceEEccCCCEEeecccccceeeccc--
Confidence            884 2333443321         123456789999999886  89999999999999999999999999998764221  


Q ss_pred             CCCccccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                           ..+..+|-+.|||||-+.-.   .|+.++||||+|+.++|+.++..++..-.-. .+++..-+    . ++++..
T Consensus       247 -----AhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yPy~~c~td-Fe~ltkvl----n-~ePP~L  315 (391)
T KOG0983|consen  247 -----AHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYPYKGCKTD-FEVLTKVL----N-EEPPLL  315 (391)
T ss_pred             -----ccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCCCCCCCcc-HHHHHHHH----h-cCCCCC
Confidence                 12334789999999988643   5999999999998777766555544331111 11111111    1 111111


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.....+...++++..|+..|+.+||...++++
T Consensus       316 ~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~  348 (391)
T KOG0983|consen  316 PGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLE  348 (391)
T ss_pred             CcccCcCHHHHHHHHHHhhcCcccCcchHHHhc
Confidence            111112222333666999999999999887654

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.94  E-value=9.3e-28  Score=260.56  Aligned_cols=226  Identities=19%  Similarity=0.275  Sum_probs=157.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHH-HHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECET-LRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~-l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+++...                 ...++..|+.. ++..+||||+++++++...     ...
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~-----~~~   75 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFRE-----GDV   75 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecC-----CcE
Confidence            468888999999999999987641                 12345566665 5667899999999998643     348


Q ss_pred             EEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      |+||||++ |+|.++++..            ..++.|++.|++|||+.+  +++||||||+||++++++.+||+|||+++
T Consensus        76 ~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~dlkp~nil~~~~~~~kl~dfg~~~  152 (283)
T cd06617          76 WICMEVMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKL--SVIHRDVKPSNVLINRNGQVKLCDFGISG  152 (283)
T ss_pred             EEEhhhhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeccccc
Confidence            99999996 6887766421            123678999999999853  79999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCC----CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLG----ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      .....       .......|+..|+|||++.+    ..++.++||||+|++++++.....++........     .+...
T Consensus       153 ~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~-----~~~~~  220 (283)
T cd06617         153 YLVDS-------VAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDSWKTPFQ-----QLKQV  220 (283)
T ss_pred             ccccc-------cccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCccccCHH-----HHHHH
Confidence            65321       11123468899999998865    4468999999999887776554443322211111     11111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ... ...... .+..+.-+.+++.+||+.+|++||++.++++
T Consensus       221 ~~~-~~~~~~-~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~  260 (283)
T cd06617         221 VEE-PSPQLP-AEKFSPEFQDFVNKCLKKNYKERPNYPELLQ  260 (283)
T ss_pred             Hhc-CCCCCC-ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            100 000000 0112222333777999999999999999986

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.94  E-value=4.6e-28  Score=264.44  Aligned_cols=172  Identities=24%  Similarity=0.333  Sum_probs=137.4

Q ss_pred             CCCCCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+|....+                  ...+.+|+.++++++||||+++++++...+   ....
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~---~~~~   81 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSN---LDKI   81 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecC---CCcE
Confidence            5788889999999999999887521                  224678999999999999999999986532   2458


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      |+||||++ ++|.+++....         .++.||+.||+|||+.   +++||||||+||++++++.+||+|||+++...
T Consensus        82 ~lv~e~~~-~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~  157 (293)
T cd07843          82 YMVMEYVE-HDLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDN---WILHRDLKTSNLLLNNRGILKICDFGLAREYG  157 (293)
T ss_pred             EEEehhcC-cCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCcEEEeecCceeecc
Confidence            99999997 58888775322         3467899999999998   89999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhH
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ...      .......+++.|+|||++.+.. ++.++||||+|++++++....
T Consensus       158 ~~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~  204 (293)
T cd07843         158 SPL------KPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKK  204 (293)
T ss_pred             CCc------cccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCC
Confidence            211      1112335788999999987654 689999999998877765543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.94  E-value=2.3e-27  Score=254.55  Aligned_cols=231  Identities=26%  Similarity=0.321  Sum_probs=165.5

Q ss_pred             CCCCceeecccCceeEEecccc---------------C---cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT---------------G---SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~---------------~---~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|...               .   ..+.+.+|+.++++++|+||+++++++...     ...+
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-----~~~~   75 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHR-----EKVY   75 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecC-----CEEE
Confidence            4777899999999999998643               1   346788999999999999999999987543     3489


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +|+||+++++|.++++...        .++.+++.|++|||+.   +|+||||||+||++++++.+||+|||.+......
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~  152 (264)
T cd06626          76 IFMEYCSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSH---GIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNN  152 (264)
T ss_pred             EEEecCCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEcccccccccCCC
Confidence            9999999999999986432        2357899999999998   8999999999999999999999999998865322


Q ss_pred             cCCCCCccccceeccccccccccccCCCC---CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGER---PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...  .........++..|+|||++.+..   ++.++|||++|++++++.....++.........     ..........
T Consensus       153 ~~~--~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~~~~~-----~~~~~~~~~~  225 (264)
T cd06626         153 TTT--MGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEMATGKRPWSELDNEFQI-----MFHVGAGHKP  225 (264)
T ss_pred             CCc--ccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHHHhCCCCccCCcchHHH-----HHHHhcCCCC
Confidence            111  001012346889999999998776   899999999998877765544433222111100     0000000000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..+.. ......+.+++.+||+.+|++||++.|++.
T Consensus       226 ~~~~~-~~~~~~~~~li~~~l~~~p~~R~~~~~i~~  260 (264)
T cd06626         226 PIPDS-LQLSPEGKDFLDRCLESDPKKRPTASELLQ  260 (264)
T ss_pred             CCCcc-cccCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence            00000 001222233777999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=6.7e-28  Score=255.17  Aligned_cols=221  Identities=23%  Similarity=0.278  Sum_probs=168.3

Q ss_pred             CCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +-|+.++.||+|.|.+|-.+++.                  .....+.+|++-|+-++|||||++|++.-     ....+
T Consensus        18 GLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViD-----TQTKl   92 (864)
T KOG4717|consen   18 GLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVID-----TQTKL   92 (864)
T ss_pred             eeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhc-----ccceE
Confidence            45777889999999998665543                  12345779999999999999999999973     33448


Q ss_pred             EEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~  792 (929)
                      |+|+|.-.+|+|+||+-++         +++..||..|+.|+|+.   .+||||+||+||.+- .-|.+|+.|||++..+
T Consensus        93 yLiLELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqL---HVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf  169 (864)
T KOG4717|consen   93 YLILELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQL---HVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF  169 (864)
T ss_pred             EEEEEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhh---hhhcccCCcceeEEeeecCceEeeeccccccC
Confidence            9999999999999998632         35578999999999998   799999999999874 5679999999999765


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHHHHhhcc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPELRQLMTS  869 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~  869 (929)
                      .++       ......+|+..|-|||++.|..| .+++||||+|+++|-+.-+..++....+  .+..++|...      
T Consensus       170 ~PG-------~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKY------  236 (864)
T KOG4717|consen  170 QPG-------KKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKY------  236 (864)
T ss_pred             CCc-------chhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccc------
Confidence            332       33456799999999999999988 5788999999766554444444433322  2223333221      


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                            ..+.-+.+-.++++..|+.+||.+|.+.+||+.
T Consensus       237 ------tvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s  269 (864)
T KOG4717|consen  237 ------TVPSHVSKECRDLIQSMLVRDPKKRASLEEIVS  269 (864)
T ss_pred             ------cCchhhhHHHHHHHHHHHhcCchhhccHHHHhc
Confidence                  122334555666888999999999999998864

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=1.3e-27  Score=266.22  Aligned_cols=245  Identities=24%  Similarity=0.296  Sum_probs=169.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|...+.||+|+||.||+++...                  ..+.+.+|+.+++.++||||+++++++..........
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            3578889999999999999887531                  2345778999999999999999999886544333345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+. ++|.+++....        .++.|++.||+|||+.   +++||||||+||+++.++.+||+|||+++...
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~  159 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSA---NVLHRDLKPSNLLLNANCDLKICDFGLARTTS  159 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECcCccccccC
Confidence            899999995 68888775432        2367899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCC-----------------chh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLP-----------------ENV  855 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~-----------------~~~  855 (929)
                      ...      .......|+..|+|||++.+ ..++.++||||+|++++++..+..++....                 +..
T Consensus       160 ~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  233 (337)
T cd07858         160 EKG------DFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLITELLGSPSEEDL  233 (337)
T ss_pred             CCc------ccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHHHHhCCCChHHh
Confidence            211      11223467899999998765 468999999999988877655443332110                 001


Q ss_pred             hhccChHHHHhhcc---cchhh-hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH--HHhhH
Q 002376          856 LQVLDPELRQLMTS---NESQT-IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSSQ  914 (929)
Q Consensus       856 ~~~~~~~l~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~~  914 (929)
                      ..+.+.........   ..... ......+...+.+++.+|++.+|++|||++|+++.  ++.+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~  298 (337)
T cd07858         234 GFIRNEKARRYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLH  298 (337)
T ss_pred             hhcCchhhhHHHHhcCcccccCHHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhc
Confidence            11111111111000   00000 00000112223348889999999999999999865  65543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.94  E-value=3.4e-27  Score=252.21  Aligned_cols=224  Identities=27%  Similarity=0.320  Sum_probs=164.1

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||+||+|....                     ..+.+.+|++++++++||||+++++++...     .
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~-----~   75 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREE-----D   75 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecC-----C
Confidence            36677899999999999987541                     235688999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++++|.++++...        .++.+++.|++|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        76 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~  152 (258)
T cd06632          76 NLYIFLELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDR---NTVHRDIKGANILVDTNGVVKLADFGMAKQV  152 (258)
T ss_pred             eEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEccCccceec
Confidence            4899999999999999886433        2356899999999998   9999999999999999999999999998765


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....       ......|+..|+|||.+.... ++.++||||+|++++++.....++..... ....     .....  .
T Consensus       153 ~~~~-------~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~~pf~~~~~-~~~~-----~~~~~--~  217 (258)
T cd06632         153 VEFS-------FAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGKPPWSQLEG-VAAV-----FKIGR--S  217 (258)
T ss_pred             cccc-------cccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcccCcH-HHHH-----HHHHh--c
Confidence            3211       122346889999999987776 89999999999877776554433322221 0000     00000  0


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......++.....+++++.+||+.+|++||++.|++.
T Consensus       218 ~~~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  254 (258)
T cd06632         218 KELPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLE  254 (258)
T ss_pred             ccCCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhc
Confidence            0000111112223334777999999999999999875

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.94  E-value=9.7e-28  Score=260.59  Aligned_cols=170  Identities=30%  Similarity=0.410  Sum_probs=135.6

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|+...                  ..+.+.+|++++++++||||+++++++...     ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~   75 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-----NKLY   75 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccC-----CcEE
Confidence            47788999999999999987541                  124688999999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||++ ++|.+++....          .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++...
T Consensus        76 ~v~e~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~  151 (284)
T cd07860          76 LVFEFLH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFG  151 (284)
T ss_pred             EEeeccc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEeeccchhhcc
Confidence            9999995 68888775321          2356899999999998   89999999999999999999999999987653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHH
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ...      .......+++.|+|||++.+.. ++.++||||+|++++++.+...
T Consensus       152 ~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~  199 (284)
T cd07860         152 VPV------RTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRA  199 (284)
T ss_pred             cCc------cccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCC
Confidence            211      1112235788999999887655 6899999999988887655543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.94  E-value=1.4e-28  Score=241.33  Aligned_cols=231  Identities=22%  Similarity=0.265  Sum_probs=162.2

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHH-ccCCccccceeeec
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLR-NVRHRNLVKLITSC  711 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~-~l~Hpniv~l~~~~  711 (929)
                      .|+-++++.       ...||.|+||+|+|..++                 ++.+++..|.++.. .-+.||||+++|.+
T Consensus        60 ~F~~~~Lqd-------lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~  132 (361)
T KOG1006|consen   60 TFTSDNLQD-------LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGAL  132 (361)
T ss_pred             ccccchHHH-------HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhh
Confidence            355455544       356999999999987665                 34567888887644 45789999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCcccccc---c--c--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIH---G--E--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~---~--~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                      +..+     ..|+.||.|. -|+..+.+   .  .        .++......||.||....  .|||||+||+|||+|..
T Consensus       133 F~EG-----dcWiCMELMd-~SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHRDvKPSNILldr~  204 (361)
T KOG1006|consen  133 FSEG-----DCWICMELMD-ISLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEEL--KIIHRDVKPSNILLDRH  204 (361)
T ss_pred             hcCC-----ceeeeHHHHh-hhHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhccCChhheEEecC
Confidence            6544     3899999994 46655433   1  1        133455678999999865  89999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPENVL  856 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~  856 (929)
                      |.+|+||||.+..+...       ...+..+|...|||||-+...  .|+.++||||+|++++|+.++.++...+..   
T Consensus       205 G~vKLCDFGIcGqLv~S-------iAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s---  274 (361)
T KOG1006|consen  205 GDVKLCDFGICGQLVDS-------IAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS---  274 (361)
T ss_pred             CCEeeecccchHhHHHH-------HHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH---
Confidence            99999999999876321       234456889999999988643  489999999999999998776666554443   


Q ss_pred             hccChHHHHhhcccchhhhhhhH---HHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          857 QVLDPELRQLMTSNESQTIQLHD---CLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       857 ~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ++++ +......+++.-....+   .-.++++ .+.-|+-.|-.+||...++.+
T Consensus       275 -vfeq-l~~Vv~gdpp~l~~~~~~~~~s~~~~~-fintCl~Kd~~~Rpky~~Lk~  326 (361)
T KOG1006|consen  275 -VFEQ-LCQVVIGDPPILLFDKECVHYSFSMVR-FINTCLIKDRSDRPKYDDLKK  326 (361)
T ss_pred             -HHHH-HHHHHcCCCCeecCcccccccCHHHHH-HHHHHhhcccccCcchhhhhc
Confidence             2221 11111111111111111   1123444 666999999999999988754

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.94  E-value=2.1e-27  Score=258.32  Aligned_cols=230  Identities=22%  Similarity=0.271  Sum_probs=169.1

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ..++.|+..+.||+|+||.||++.+..               ..+.+.+|++.+++++|||++++++++...     ...
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~   90 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLVG-----DEL   90 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCCeeEEEEEEEEC-----CEE
Confidence            356678888999999999999987751               145788999999999999999999998653     358


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++|+||+++++|.+++....         .++.+++.||+|||+.   +++|+|+||+||+++.++.+||+|||++....
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~  167 (286)
T cd06614          91 WVVMEYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQ---NVIHRDIKSDNILLSKDGSVKLADFGFAAQLT  167 (286)
T ss_pred             EEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCChhhEEEcCCCCEEECccchhhhhc
Confidence            99999999999999987542         2367899999999997   99999999999999999999999999987543


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...      .......++..|+|||++.+..++.++||||+|++++++.....++..... . .    .......... .
T Consensus       168 ~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~~~-~-~----~~~~~~~~~~-~  234 (286)
T cd06614         168 KEK------SKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLREPP-L-R----ALFLITTKGI-P  234 (286)
T ss_pred             cch------hhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCCCH-H-H----HHHHHHhcCC-C
Confidence            211      111233578899999999988899999999999887776544433322211 0 0    0000000000 0


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....+.+...+++++.+|++.+|.+||++.++++
T Consensus       235 ~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~  269 (286)
T cd06614         235 PLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQ  269 (286)
T ss_pred             CCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            00001112223334777999999999999999975

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.94  E-value=1e-27  Score=267.15  Aligned_cols=181  Identities=28%  Similarity=0.385  Sum_probs=141.2

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ..++|+..+.||+|+||.||+|.+..                  ..+.+.+|+.+++++ +||||++++++|...+   .
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~---~   81 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAEN---D   81 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCC---C
Confidence            34678888999999999999987541                  123467899999999 9999999999985422   2


Q ss_pred             ceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ...++||||++ ++|.++++...       .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        82 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~dl~p~nill~~~~~~kl~d~g~~~~~  157 (337)
T cd07852          82 KDIYLVFEYME-TDLHAVIRANILEDVHKRYIMYQLLKALKYIHSG---NVIHRDLKPSNILLNSDCRVKLADFGLARSL  157 (337)
T ss_pred             ceEEEEecccc-cCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCcEEEeeccchhcc
Confidence            35799999997 58988775421       2467899999999997   9999999999999999999999999999866


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ....... .........||..|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       158 ~~~~~~~-~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~el~tg~~p  212 (337)
T cd07852         158 SELEENP-ENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGEMLLGKPL  212 (337)
T ss_pred             ccccccc-cCcchhcccccccccCceeeeccccccccchHHHHHHHHHHHHhCCCC
Confidence            4321110 1112334578999999998765 4578999999999888876655433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.94  E-value=5.2e-27  Score=253.92  Aligned_cols=225  Identities=24%  Similarity=0.294  Sum_probs=164.3

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      -|+..+.||+|+||.||+|....                 ..+.+.+|+.++++++||||+++++++...     ...++
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~l   79 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-----TKLWI   79 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeC-----CeEEE
Confidence            35677899999999999986531                 124688899999999999999999998543     34899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||||+++|+|.+++....       ..+.+++.|++|||+.   +++|+||||+||+++.++.++|+|||+++.+.... 
T Consensus        80 v~e~~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~-  155 (277)
T cd06641          80 IMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQ-  155 (277)
T ss_pred             EEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccC---CeecCCCCHHhEEECCCCCEEEeecccceecccch-
Confidence            999999999999886422       3367899999999998   99999999999999999999999999987653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           .......|+..|+|||++.+..++.++||||+|++++++.+...++.....  .     ..........  ....
T Consensus       156 -----~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~--~-----~~~~~~~~~~--~~~~  221 (277)
T cd06641         156 -----IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPHSELHP--M-----KVLFLIPKNN--PPTL  221 (277)
T ss_pred             -----hhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCCCccch--H-----HHHHHHhcCC--CCCC
Confidence                 111234688999999999888899999999999877776544333322111  0     0000000000  0001


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ......-+.+++.+||+.+|++||+|.++++.
T Consensus       222 ~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~  253 (277)
T cd06641         222 EGNYSKPLKEFVEACLNKEPSFRPTAKELLKH  253 (277)
T ss_pred             CcccCHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence            11112223347779999999999999999873

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.94  E-value=1.9e-27  Score=261.74  Aligned_cols=179  Identities=26%  Similarity=0.386  Sum_probs=138.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC---C
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK---N  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~---~  718 (929)
                      .++|+..+.||+|+||.||+|....                  ....+.+|++++++++||||++++++|...+..   .
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            4578999999999999999987641                  123456899999999999999999998654321   2


Q ss_pred             cceEEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ....++||||++ +++.+++...         ..++.|++.||+|||+.   +++||||||+||+++.++.+||+|||++
T Consensus        91 ~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~  166 (310)
T cd07865          91 KGSFYLVFEFCE-HDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRN---KILHRDMKAANILITKDGILKLADFGLA  166 (310)
T ss_pred             CceEEEEEcCCC-cCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEECCCCcEEECcCCCc
Confidence            345799999996 5787766532         13367899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~  844 (929)
                      +.........  ........++..|+|||++.+.. ++.++||||+|++++++...
T Consensus       167 ~~~~~~~~~~--~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~  220 (310)
T cd07865         167 RAFSLSKNSK--PNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTR  220 (310)
T ss_pred             ccccCCcccC--CCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhC
Confidence            8664321111  11122346788999999887654 78999999999888776443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.94  E-value=1.6e-27  Score=279.05  Aligned_cols=177  Identities=21%  Similarity=0.219  Sum_probs=122.9

Q ss_pred             hhCCCCCceeecccCceeEEeccccCc----H---------HHHHHHHHHHHcc---CCccccceeeecccCC-CCCcce
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGS----W---------KSFIAECETLRNV---RHRNLVKLITSCSSLD-SKNMEF  721 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~----~---------~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~-~~~~~~  721 (929)
                      ..++|+..+.||+|+||.||+|++...    .         +.-..|+....++   .+.+++.+...+.... ......
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~~e~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGAVEIWMNERVRRACPNSCADFVYGFLEPVSSKKEDE  209 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccchhHHHHHHHHHhhchhhHHHHHHhhhcccccccCCc
Confidence            567899999999999999999987533    0         0111233333333   2333443333222111 123445


Q ss_pred             EEEEEEecCCCCccccccccc----------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCe
Q 002376          722 LALVYEFLSNGSLGDWIHGER----------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNI  773 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~----------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NI  773 (929)
                      .++||||+++++|.++++...                            .++.|++.||+|||+.   +|+||||||+||
T Consensus       210 ~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHRDLKP~NI  286 (566)
T PLN03225        210 YWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHRDVKPQNI  286 (566)
T ss_pred             eEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeCcCCHHHE
Confidence            899999999999988875321                            2456889999999998   999999999999


Q ss_pred             eecC-CCceEEeccccccccccccCCCCCccccceeccccccccccccCCC----------------------CCCCCCC
Q 002376          774 LLDE-EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE----------------------RPSTAGD  830 (929)
Q Consensus       774 Ll~~-~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----------------------~~~~~~D  830 (929)
                      |+++ ++.+||+|||+|+.+....     ......+.||+.|||||.+...                      .++.++|
T Consensus       287 Ll~~~~~~~KL~DFGlA~~l~~~~-----~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~D  361 (566)
T PLN03225        287 IFSEGSGSFKIIDLGAAADLRVGI-----NYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFD  361 (566)
T ss_pred             EEeCCCCcEEEEeCCCcccccccc-----ccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcc
Confidence            9985 6799999999998653221     1122446789999999965322                      2345679


Q ss_pred             CCCCcCCCCCcch
Q 002376          831 VPTSESFAGEFNI  843 (929)
Q Consensus       831 V~s~g~~~~~~~~  843 (929)
                      |||+||+++++..
T Consensus       362 VwSlGviL~el~~  374 (566)
T PLN03225        362 IYSAGLIFLQMAF  374 (566)
T ss_pred             cHHHHHHHHHHHh
Confidence            9999998887654

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.94  E-value=6.4e-27  Score=255.12  Aligned_cols=172  Identities=26%  Similarity=0.353  Sum_probs=136.7

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||+|....                 ....+.+|++++++++||||+++++++.+.     ...+
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~   79 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTK-----KTLT   79 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecC-----CeEE
Confidence            578889999999999999987641                 123567899999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||++ ++|.+++....         ..+.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus        80 lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  155 (291)
T cd07844          80 LVFEYLD-TDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQR---RVLHRDLKPQNLLISERGELKLADFGLARAKSV  155 (291)
T ss_pred             EEEecCC-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccCCHHHEEEcCCCCEEECccccccccCC
Confidence            9999997 58988875322         2256899999999998   999999999999999999999999999875321


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      .      ........++..|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       156 ~------~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~  203 (291)
T cd07844         156 P------SKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPL  203 (291)
T ss_pred             C------CccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCC
Confidence            1      011122356889999999876 4589999999999888876554433

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.94  E-value=8.1e-27  Score=249.25  Aligned_cols=225  Identities=24%  Similarity=0.358  Sum_probs=162.5

Q ss_pred             CCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          664 SHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +..+.||+|+||.||+++...                     ..+.+.+|++.++.++||||+++++++.+.     ...
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~   76 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEE-----EPL   76 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCC-----Cee
Confidence            456889999999999876642                     345788999999999999999999998653     348


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++||||+++++|.+++....          .++.|++.|++|||+.   +++||||||+||++++++.+|++|||+++..
T Consensus        77 ~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~  153 (258)
T smart00219       77 MIVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK---NFIHRDLAARNCLVGENLVVKISDFGLSRDL  153 (258)
T ss_pred             EEEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcC---CeeecccccceEEEccCCeEEEcccCCceec
Confidence            99999999999999886432          2356899999999998   9999999999999999999999999999866


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .......     .....+++.|+|||.+.+..++.++|||++|++++++.. ...++....  .     ..+........
T Consensus       154 ~~~~~~~-----~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~~g~~p~~~~~--~-----~~~~~~~~~~~  221 (258)
T smart00219      154 YDDDYYK-----KKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGESPYPGMS--N-----EEVLEYLKKGY  221 (258)
T ss_pred             ccccccc-----cccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHhCCCCCCCCCC--H-----HHHHHHHhcCC
Confidence            4321111     111236789999999988889999999999987776533 111111111  0     11111000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      ..  ........-+.+++.+|+..||++|||+.|+++.|
T Consensus       222 ~~--~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~l  258 (258)
T smart00219      222 RL--PKPENCPPEIYKLMLQCWAEDPEDRPTFSELVEIL  258 (258)
T ss_pred             CC--CCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHhhC
Confidence            00  00011122233377799999999999999998764

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.94  E-value=5.3e-27  Score=250.68  Aligned_cols=224  Identities=23%  Similarity=0.284  Sum_probs=163.1

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++....                  ..+.+.+|++++++++||||+++++++...     ...+
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~-----~~~~   75 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQEN-----GRLF   75 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccC-----CeEE
Confidence            47778999999999999987641                  234678999999999999999999988543     3589


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~  792 (929)
                      +|+||+++++|.+++....          .++.+++.|++|||+.   +++|||+||+||++++++ .+|++|||.+...
T Consensus        76 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~  152 (257)
T cd08225          76 IVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDR---KILHRDIKSQNIFLSKNGMVAKLGDFGIARQL  152 (257)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEcCCCCeEEecccccchhc
Confidence            9999999999999886422          2356899999999998   899999999999999886 5699999998865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ....      .......|++.|+|||+..+..++.++||||+|++++++.....++....  ..+.+.........   .
T Consensus       153 ~~~~------~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~--~~~~~~~~~~~~~~---~  221 (257)
T cd08225         153 NDSM------ELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPFEGNN--LHQLVLKICQGYFA---P  221 (257)
T ss_pred             cCCc------ccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHhcccCC---C
Confidence            3211      11122468999999999988889999999999988777654443332111  11111000000000   0


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    ...-+++++.+|++.+|++|||+.|+++
T Consensus       222 ~~~~----~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  253 (257)
T cd08225         222 ISPN----FSRDLRSLISQLFKVSPRDRPSITSILK  253 (257)
T ss_pred             CCCC----CCHHHHHHHHHHhccChhhCcCHHHHhh
Confidence            0011    1122333777999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=1.7e-27  Score=257.76  Aligned_cols=225  Identities=22%  Similarity=0.316  Sum_probs=161.9

Q ss_pred             CCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccC---CccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVR---HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~---Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .|+..+.||+|+||.||+|...                 ...+++.+|++++++++   |||++++++++..     ...
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~-----~~~   76 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLK-----GPR   76 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeee-----CCE
Confidence            4677789999999999998753                 12346888999999997   9999999999854     235


Q ss_pred             EEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      .++||||+++++|.++++...       .++.+++.|++|||+.   +|+||||+|+||++++++.++++|||.+.....
T Consensus        77 ~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~  153 (277)
T cd06917          77 LWIIMEYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKV---GVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ  153 (277)
T ss_pred             EEEEEecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCcCHHHEEEcCCCCEEEccCCceeecCC
Confidence            899999999999999886432       2356899999999998   999999999999999999999999999986642


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      .......|+..|+|||++.++ .++.++||||+|++++++..+..++.....  .+...     ........
T Consensus       154 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~--~~~~~-----~~~~~~~~  220 (277)
T cd06917         154 NS------SKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATGNPPYSDVDA--FRAMM-----LIPKSKPP  220 (277)
T ss_pred             Cc------cccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhCCCCCCCCCh--hhhhh-----ccccCCCC
Confidence            21      112234689999999988754 479999999999877776544433322111  00000     00000000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .... +.....+.+++.+||+.||++||++.|++.
T Consensus       221 ~~~~-~~~~~~~~~~i~~~l~~~p~~R~~~~~il~  254 (277)
T cd06917         221 RLED-NGYSKLLREFVAACLDEEPKERLSAEELLK  254 (277)
T ss_pred             CCCc-ccCCHHHHHHHHHHcCCCcccCcCHHHHhh
Confidence            0000 001122334778999999999999999975

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=2.7e-27  Score=264.10  Aligned_cols=250  Identities=22%  Similarity=0.278  Sum_probs=170.5

Q ss_pred             hHHHHHh----hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeee
Q 002376          653 YDELRRA----TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITS  710 (929)
Q Consensus       653 ~~~l~~~----~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~  710 (929)
                      .+|+.++    .++|...+.||+|+||.||+|....                  ..+.+.+|++++++++||||++++++
T Consensus         3 ~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~   82 (342)
T cd07879           3 REEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDV   82 (342)
T ss_pred             hhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhhe
Confidence            3455544    3789999999999999999987531                  12357789999999999999999999


Q ss_pred             cccCCC-CCcceEEEEEEecCCCCccccccc------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          711 CSSLDS-KNMEFLALVYEFLSNGSLGDWIHG------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       711 ~~~~~~-~~~~~~~lV~e~~~~gsL~~~l~~------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                      +..... ......++|+||+. +++.++...      ...++.|++.||+|||+.   +|+||||||+||+++.++.+|+
T Consensus        83 ~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dlkp~NIll~~~~~~kL  158 (342)
T cd07879          83 FTSAVSGDEFQDFYLVMPYMQ-TDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSA---GIIHRDLKPGNLAVNEDCELKI  158 (342)
T ss_pred             ecccccCCCCceEEEEecccc-cCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEE
Confidence            865332 12234699999996 467665431      123467899999999998   8999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhcc-
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVL-  859 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~-  859 (929)
                      +|||+++....         ......|+..|+|||++.+ ..++.++||||+|++++++..+..++.....  .+..++ 
T Consensus       159 ~dfg~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~~~~~~~~~~~~  229 (342)
T cd07879         159 LDFGLARHADA---------EMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILK  229 (342)
T ss_pred             eeCCCCcCCCC---------CCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            99999875421         1123467889999999876 4589999999999988886655544332111  000000 


Q ss_pred             -----ChHHHH---------hhcccch-hhhhh----hHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHHH
Q 002376          860 -----DPELRQ---------LMTSNES-QTIQL----HDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQEI  916 (929)
Q Consensus       860 -----~~~l~~---------~~~~~~~-~~~~~----~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~~  916 (929)
                           .+....         ....... .....    +..-..+. +++.+||+.||++||+++|++.  .+++.++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~~  306 (342)
T cd07879         230 VTGVPGPEFVQKLEDKAAKSYIKSLPKYPRKDFSTLFPKASPQAV-DLLEKMLELDVDKRLTATEALEHPYFDSFRDA  306 (342)
T ss_pred             hcCCCCHHHHHHhcccchHHHHhhcCCcccchHHHHhcCCCHHHH-HHHHHHcCCChhhCcCHHHHhcCcchhhcccc
Confidence                 000000         0000000 00000    00111233 4888999999999999999984  47776553

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.94  E-value=1.2e-27  Score=260.48  Aligned_cols=228  Identities=20%  Similarity=0.221  Sum_probs=155.4

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|...+.||+|+||.||++....                 ....+.+|+.++.++. ||||+++++++...     ...+
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~-----~~~~   79 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFRE-----GDCW   79 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecC-----CcEE
Confidence            34456789999999999877641                 2346788999999996 99999999988643     3379


Q ss_pred             EEEEecCCCCccccc---cc----------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          724 LVYEFLSNGSLGDWI---HG----------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       724 lV~e~~~~gsL~~~l---~~----------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      +||||++. ++.++.   ..          ...++.+++.||+|||+..  +++||||||+||+++.++.+||+|||+++
T Consensus        80 ~~~e~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~  156 (288)
T cd06616          80 ICMELMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEEL--KIIHRDVKPSNILLDRNGNIKLCDFGISG  156 (288)
T ss_pred             EEEecccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcC--CeeccCCCHHHEEEccCCcEEEeecchhH
Confidence            99999864 544432   11          1234678999999999742  89999999999999999999999999997


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhh
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      .....       .......|++.|+|||++.+.   .++.++||||+|++++++..+..++..... ..+    .+....
T Consensus       157 ~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~-~~~----~~~~~~  224 (288)
T cd06616         157 QLVDS-------IAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNS-VFD----QLTQVV  224 (288)
T ss_pred             HhccC-------CccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHhCCCCchhcch-HHH----HHhhhc
Confidence            65321       111233688999999998876   689999999999877775444333322211 000    111110


Q ss_pred             cccc-hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          868 TSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       868 ~~~~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .... .........+...+.+++.+||+.+|++|||++||+..
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~  267 (288)
T cd06616         225 KGDPPILSNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEH  267 (288)
T ss_pred             CCCCCcCCCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence            0000 00000000122223337889999999999999998763

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.94  E-value=3.9e-27  Score=252.74  Aligned_cols=229  Identities=23%  Similarity=0.364  Sum_probs=169.4

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|++|.||++....                 ..+.+.+|++.+++++|||++++++++...     ...+
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKE-----GEIS   75 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccC-----CeEE
Confidence            367888999999999999987652                 246788999999999999999999998643     4589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhh-CCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHN-DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++++|.+++....        .++.|+++|++|||+ .   +++||||+|+||+++.++.+|++|||.++....
T Consensus        76 lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~  152 (264)
T cd06623          76 IVLEYMDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKR---HIIHRDIKPSNLLINSKGEVKIADFGISKVLEN  152 (264)
T ss_pred             EEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccC---CCccCCCCHHHEEECCCCCEEEccCccceeccc
Confidence            9999999999999986422        346789999999999 7   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...      ......++..|+|||.+.+..++.++|||++|++++++.+...++..... ...+......     .....
T Consensus       153 ~~~------~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~~~~~~~~~~~~~-----~~~~~  221 (264)
T cd06623         153 TLD------QCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPGQPSFFELMQAIC-----DGPPP  221 (264)
T ss_pred             CCC------cccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCccccccCHHHHHHHHh-----cCCCC
Confidence            211      11234688999999999999999999999999888776655544433321 1111111100     00000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ... ....+..+.+++.+|++.+|++||++.|+++.
T Consensus       222 ~~~-~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~  256 (264)
T cd06623         222 SLP-AEEFSPEFRDFISACLQKDPKKRPSAAELLQH  256 (264)
T ss_pred             CCC-cccCCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence            000 01011223337779999999999999999863

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.94  E-value=2.5e-27  Score=257.90  Aligned_cols=232  Identities=23%  Similarity=0.248  Sum_probs=165.7

Q ss_pred             CCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~  717 (929)
                      +|+..+.||+|+||.||+++..                       ...+.+.+|++++.++ +||||+++++++..    
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~----   76 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQT----   76 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeec----
Confidence            3677899999999999987532                       0124577899999999 59999999988743    


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                       ....++||||+++|+|.+++....        .++.|+++||+|||+.   +++||||||+||++++++.+|++|||++
T Consensus        77 -~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~dl~p~nil~~~~~~~~l~dfg~~  152 (288)
T cd05583          77 -DTKLHLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQL---GIIYRDIKLENILLDSEGHVVLTDFGLS  152 (288)
T ss_pred             -CCEEEEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHeEECCCCCEEEEECccc
Confidence             234799999999999998876432        2356899999999997   9999999999999999999999999998


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQL  866 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~  866 (929)
                      +.......     .......|+..|+|||.+.+..  .+.++||||+|++++++.....++..... .....+...... 
T Consensus       153 ~~~~~~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~~-  226 (288)
T cd05583         153 KEFLAEEE-----ERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILK-  226 (288)
T ss_pred             cccccccc-----cccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHHHHHhCCCCcccCcccchHHHHHHHHHc-
Confidence            86532211     1112346899999999987765  78999999999887776555444321111 000001111111 


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                        ....    .+..+...+++++.+||+.||++|||+++|.+.|+..
T Consensus       227 --~~~~----~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~  267 (288)
T cd05583         227 --SKPP----FPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHP  267 (288)
T ss_pred             --cCCC----CCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCc
Confidence              1111    1111222334477799999999999999888776653

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.94  E-value=1.7e-27  Score=257.89  Aligned_cols=219  Identities=21%  Similarity=0.252  Sum_probs=151.3

Q ss_pred             eecccCceeEEeccccC-------------------cHHHHHHHHHHHHc---cCCccccceeeecccCCCCCcceEEEE
Q 002376          668 LIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRN---VRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~---l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .||+|+||.||++....                   ..+.+.+|..+++.   .+||||+.+++++...     +..++|
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~lv   75 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTP-----DKLCFI   75 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecC-----CeEEEE
Confidence            48999999999877541                   01234445444433   4799999999988543     348999


Q ss_pred             EEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          726 YEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+|++|||+++.....  
T Consensus        76 ~e~~~~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~--  150 (279)
T cd05633          76 LDLMNGGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--  150 (279)
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCCCCCHHHEEECCCCCEEEccCCcceecccc--
Confidence            99999999998876432        3467899999999998   8999999999999999999999999998754211  


Q ss_pred             CCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            ......||..|+|||.+.+ ..++.++||||+|++++++.+...++........+    .+.....   .....
T Consensus       151 ------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~----~~~~~~~---~~~~~  217 (279)
T cd05633         151 ------KPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKH----EIDRMTL---TVNVE  217 (279)
T ss_pred             ------CccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcCCCCCcCHH----HHHHHhh---cCCcC
Confidence                  1122368999999999864 56899999999998887765544443322111101    1111000   00001


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRI-----GIREALRR  909 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~~  909 (929)
                      .++....-+.+++.+|++.||++||     +++|+++.
T Consensus       218 ~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h  255 (279)
T cd05633         218 LPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEH  255 (279)
T ss_pred             CccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhC
Confidence            1111222233367799999999999     59988773

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=9.8e-28  Score=249.63  Aligned_cols=236  Identities=22%  Similarity=0.253  Sum_probs=170.4

Q ss_pred             CCCCCceeecccCceeEEecccc--------------C---------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------G---------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~---------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      ++|-..+++|+|||++||++-+-              +         ..+...+|.++-+.++||.||++++|+.-... 
T Consensus       463 ~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtd-  541 (775)
T KOG1151|consen  463 DRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTD-  541 (775)
T ss_pred             HHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccc-
Confidence            45667789999999999987653              1         12456789999999999999999999965332 


Q ss_pred             CcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec---CCCceEEecc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDF  786 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~---~~~~~ki~Df  786 (929)
                         .+|-|+|||+|.+|.-|++..        |.+..||..||.||... .++|||-|+||.|||+.   ..|.+||.||
T Consensus       542 ---sFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEi-kpPIIHYDLKPgNILLv~GtacGeIKITDF  617 (775)
T KOG1151|consen  542 ---SFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEI-KPPIIHYDLKPGNILLVNGTACGEIKITDF  617 (775)
T ss_pred             ---cceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc-CCCeeeeccCCccEEEecCcccceeEeeec
Confidence               379999999999999999743        45578999999999987 67999999999999995   4578999999


Q ss_pred             ccccccccccCCCC-CccccceeccccccccccccCCC----CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          787 GLARFLLERVDNQS-SISSTHVFMGSIGYVPPEYGLGE----RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       787 Gla~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      |+++.+..+..... ....+...+||.+|++||.+.-+    +++.|+||||.|++.|....+.-+++.-.. ..+++..
T Consensus       618 GLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqs-QQdILqe  696 (775)
T KOG1151|consen  618 GLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQS-QQDILQE  696 (775)
T ss_pred             chhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCchh-HHHHHhh
Confidence            99999865433322 22334567899999999977644    479999999999988887666555554322 1111111


Q ss_pred             H--HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          862 E--LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       862 ~--l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      .  +...-...+ ..+    -+....++++++|++..-++|....++.
T Consensus       697 NTIlkAtEVqFP-~KP----vVsseAkaFIRRCLaYRKeDR~DV~qLA  739 (775)
T KOG1151|consen  697 NTILKATEVQFP-PKP----VVSSEAKAFIRRCLAYRKEDRIDVQQLA  739 (775)
T ss_pred             hchhcceeccCC-CCC----ccCHHHHHHHHHHHHhhhhhhhhHHHHc
Confidence            1  111000000 111    1222233477799999999998877664

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.94  E-value=4.5e-27  Score=252.17  Aligned_cols=219  Identities=22%  Similarity=0.315  Sum_probs=158.5

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||.||+++...                   ..+.+.+|++++++++||||+++++++.+.     ...++||||+
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~lv~e~~   75 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDK-----KYIYMLMEYC   75 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcC-----CccEEEEecC
Confidence            6999999999987751                   134688899999999999999999988543     3479999999


Q ss_pred             CCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          730 SNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       730 ~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      ++|+|.++++....        .+.+++.||+|+|+.   +++|+||||+||+++.++.+|++|||+++......     
T Consensus        76 ~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~-----  147 (262)
T cd05572          76 LGGELWTILRDRGLFDEYTARFYIACVVLAFEYLHNR---GIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ-----  147 (262)
T ss_pred             CCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc-----
Confidence            99999999875432        356899999999997   99999999999999999999999999998663221     


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL  881 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  881 (929)
                        ......|+..|+|||++.+..++.++|||++|+++|++.....++....+...+..    ......  ......+...
T Consensus       148 --~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~  219 (262)
T cd05572         148 --KTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGEDDEDPMEIY----NDILKG--NGKLEFPNYI  219 (262)
T ss_pred             --ccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCCCCCCHHHHH----HHHhcc--CCCCCCCccc
Confidence              12234688999999999888899999999999887776554444332221011111    111100  0000111111


Q ss_pred             HHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          882 ITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       882 ~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ..-+.+++.+||+.+|++||+     ++|+++
T Consensus       220 ~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~  251 (262)
T cd05572         220 DKAAKDLIKQLLRRNPEERLGNLKGGIKDIKK  251 (262)
T ss_pred             CHHHHHHHHHHccCChhhCcCCcccCHHHHhc
Confidence            222334777999999999999     555543

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.94  E-value=1.7e-27  Score=258.84  Aligned_cols=169  Identities=24%  Similarity=0.344  Sum_probs=137.6

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|++..                  ..+.+.+|+.++++++||||+++++++..     ....+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-----~~~~~   75 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPH-----GSGFV   75 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEec-----CCeeE
Confidence            47788999999999999987541                  13578899999999999999999999854     33589


Q ss_pred             EEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+ +++|.+++...         +.++.||+.||+|||+.   +++|+||||+||++++++.+|++|||+++....
T Consensus        76 ~v~e~~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~  151 (286)
T cd07832          76 LVMEYM-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHAN---GIMHRDLKPANLLISADGVLKIADFGLARLFSE  151 (286)
T ss_pred             EEeccc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCHHHEEEcCCCcEEEeeeeecccccC
Confidence            999999 99999987532         23367899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ...     .......|+..|+|||++.+.. ++.++||||+|++++++...
T Consensus       152 ~~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg  197 (286)
T cd07832         152 EEP-----RLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNG  197 (286)
T ss_pred             CCC-----CccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcC
Confidence            211     1122346899999999987654 68999999999888776554

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.94  E-value=2.3e-26  Score=236.84  Aligned_cols=245  Identities=19%  Similarity=0.201  Sum_probs=187.0

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeec
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSC  711 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~  711 (929)
                      +|+.....+++...++-+|.||.||+|.+..                      +...|..|...+..+.|||+.++.+++
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            4555556678888899999999999996541                      123466788888888999999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc----------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER----------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl  775 (929)
                      .+..    ...+++|.++.-|+|..++...|                ..+.|++.|++|||.+   +|||.||.++|.+|
T Consensus       357 ie~~----~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHkDiAaRNCvI  429 (563)
T KOG1024|consen  357 IEDY----ATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHKDIAARNCVI  429 (563)
T ss_pred             eecc----CcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccchhhhhccee
Confidence            7633    34789999999999999997322                1256899999999998   99999999999999


Q ss_pred             cCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchh
Q 002376          776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENV  855 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~  855 (929)
                      |+..++|++|=.++|.+.+.+-.--    ....-....||+||.+....|+.++||||||+.+||+.+    -+..|   
T Consensus       430 dd~LqVkltDsaLSRDLFP~DYhcL----GDnEnRPvkWMslEal~n~~yssasDvWsfGVllWELmt----lg~~P---  498 (563)
T KOG1024|consen  430 DDQLQVKLTDSALSRDLFPGDYHCL----GDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLWELMT----LGKLP---  498 (563)
T ss_pred             hhheeEEeccchhccccCccccccc----CCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHHHHHh----cCCCC---
Confidence            9999999999999998754322110    011123568999999999999999999999988777432    11222   


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ..-+||.-...+-+++..-.+...|..++.. ++..||+.+|++||++++++.-|.+...+.
T Consensus       499 yaeIDPfEm~~ylkdGyRlaQP~NCPDeLf~-vMacCWallpeeRPsf~Qlv~cLseF~~ql  559 (563)
T KOG1024|consen  499 YAEIDPFEMEHYLKDGYRLAQPFNCPDELFT-VMACCWALLPEERPSFSQLVICLSEFHTQL  559 (563)
T ss_pred             ccccCHHHHHHHHhccceecCCCCCcHHHHH-HHHHHHhcCcccCCCHHHHHHHHHHHHHHH
Confidence            2234554444444444444455577778888 999999999999999999999999877654

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.93  E-value=3.4e-27  Score=256.14  Aligned_cols=168  Identities=29%  Similarity=0.408  Sum_probs=134.6

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|++|.||+|....                  ..+.+.+|++++++++|||++++++++.+.     ...++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~-----~~~~i   75 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSE-----NKLYL   75 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccC-----CeEEE
Confidence            5667899999999999987541                  124688999999999999999999998543     45899


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||++ ++|.+++....          .++.|+++||+|||+.   +++||||+|+||++++++.+||+|||+++....
T Consensus        76 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~  151 (283)
T cd07835          76 VFEFLD-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSH---RVLHRDLKPQNLLIDREGALKLADFGLARAFGV  151 (283)
T ss_pred             EEeccC-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCcEEEeecccccccCC
Confidence            999995 68998876433          2357899999999997   999999999999999999999999999976532


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ..      .......++..|+|||++.+. .++.++||||+|++++++....
T Consensus       152 ~~------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~  197 (283)
T cd07835         152 PV------RTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRR  197 (283)
T ss_pred             Cc------cccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCC
Confidence            11      111223568899999988665 4799999999998887765544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.93  E-value=1.1e-26  Score=252.50  Aligned_cols=235  Identities=23%  Similarity=0.289  Sum_probs=162.1

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHcc---CCccccceeeecccCCCCCcce
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNV---RHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      |+..+.||+|+||.||+|+...                  ....+.+|+.+++++   +|||++++++++...+......
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            5677899999999999998651                  123466788777666   5999999999997655433345


Q ss_pred             EEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .++||||++ ++|.+++....          .++.|++.||+|||+.   +++|+|+||+||++++++.+||+|||.++.
T Consensus        81 ~~l~~e~~~-~~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~~l~~~nili~~~~~~~l~dfg~~~~  156 (287)
T cd07838          81 LTLVFEHVD-QDLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSH---RIVHRDLKPQNILVTSDGQVKIADFGLARI  156 (287)
T ss_pred             eEEEehhcc-cCHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhEEEccCCCEEEeccCccee
Confidence            899999996 58888775321          2367899999999998   899999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChH----H--
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPE----L--  863 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~----l--  863 (929)
                      ....       .......++..|+|||++.+..++.++||||+|++++++.....++.....  ....+.+..    .  
T Consensus       157 ~~~~-------~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (287)
T cd07838         157 YSFE-------MALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELFRRRPLFRGTSEADQLDKIFDVIGLPSEEE  229 (287)
T ss_pred             ccCC-------cccccccccccccChHHhccCCCCCcchhhhHHHHHHHHHhCCCcccCCChHHHHHHHHHHcCCCChHh
Confidence            5321       111223578899999999999999999999999888876544333221111  011111000    0  


Q ss_pred             --------HHhhcccchhh-hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          864 --------RQLMTSNESQT-IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       864 --------~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                              ........... ......+...+.+++.+||+.||++||+++|++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~  283 (287)
T cd07838         230 WPRNVSLPRSSFPSYTPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQ  283 (287)
T ss_pred             cCCCcccchhhcccccccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhc
Confidence                    00000000000 0000112233344888999999999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.93  E-value=7.7e-27  Score=259.48  Aligned_cols=177  Identities=27%  Similarity=0.355  Sum_probs=136.8

Q ss_pred             CCCCceeecccCceeEEeccccCc--------------------HHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGS--------------------WKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~--------------------~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||.||+++....                    .+.+.+|+++++++ +||||+++++++.... ....
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~-~~~~   79 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFP-GNFN   79 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeecc-ccCC
Confidence            477789999999999999886522                    24577899999999 5999999998764322 2233


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++++||++ ++|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.+
T Consensus        80 ~~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givH~dlkp~Nili~~~~~~kl~Dfg~a~~~  155 (332)
T cd07857          80 ELYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSA---NVLHRDLKPGNLLVNADCELKICDFGLARGF  155 (332)
T ss_pred             cEEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHeEEcCCCCEEeCcCCCceec
Confidence            4789999986 68988875332        3467899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhH
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ......  .........||..|+|||++.+ ..++.++||||+|++++++....
T Consensus       156 ~~~~~~--~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~l~~l~~g~  207 (332)
T cd07857         156 SENPGE--NAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILAELLGRK  207 (332)
T ss_pred             cccccc--ccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            432111  1111234578999999998766 46899999999998877764443

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.93  E-value=2.9e-27  Score=260.37  Aligned_cols=183  Identities=25%  Similarity=0.359  Sum_probs=140.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC---CC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS---KN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~---~~  718 (929)
                      .++|+..+.||+|+||.||+|....                  ....+.+|++++++++||||+++++++.+...   ..
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            5689999999999999999987641                  12357789999999999999999998765432   12


Q ss_pred             cceEEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ....++||||+++ ++...+...         ..++.|+++||+|||+.   +|+||||||+||++++++.+||+|||++
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~  162 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHEN---HILHRDIKAANILIDNQGILKIADFGLA  162 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECcCccc
Confidence            3457999999964 666655422         13467899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCC-----CccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHH
Q 002376          790 RFLLERVDNQS-----SISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       790 ~~~~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      +..........     .........|++.|+|||++.+. .++.++||||+|++++++.++..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~  225 (311)
T cd07866         163 RPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRP  225 (311)
T ss_pred             hhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCC
Confidence            86543221111     11112345678999999987654 58999999999998888765543

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.93  E-value=3.7e-27  Score=256.82  Aligned_cols=221  Identities=23%  Similarity=0.259  Sum_probs=159.9

Q ss_pred             eeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecC
Q 002376          667 NLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS  730 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~  730 (929)
                      .+||+|+||.||++....                ..+.+.+|+.+++.++|||++++++++...     ...++||||++
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv~e~~~  100 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-----DELWVVMEFLE  100 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeC-----CEEEEEEecCC
Confidence            579999999999886641                234688899999999999999999998543     34899999999


Q ss_pred             CCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCcc
Q 002376          731 NGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS  803 (929)
Q Consensus       731 ~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~  803 (929)
                      +++|.+++...+       .++.|++.|++|||+.   +++||||||+||++++++.++|+|||++.......      .
T Consensus       101 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~------~  171 (292)
T cd06657         101 GGALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV------P  171 (292)
T ss_pred             CCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEECCCCCEEEcccccceeccccc------c
Confidence            999998875322       3467899999999998   99999999999999999999999999987553211      1


Q ss_pred             ccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHH
Q 002376          804 STHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLIT  883 (929)
Q Consensus       804 ~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  883 (929)
                      ......|+++|+|||++.+..++.++||||+|++++++.+...++.....  .+.+ ..+....+........    ...
T Consensus       172 ~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~~~~--~~~~-~~~~~~~~~~~~~~~~----~~~  244 (292)
T cd06657         172 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAM-KMIRDNLPPKLKNLHK----VSP  244 (292)
T ss_pred             cccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHH-HHHHhhCCcccCCccc----CCH
Confidence            12234689999999999888899999999999877775543333221111  0000 0111111110000001    111


Q ss_pred             HHHHHhccccCCCCCCCCCHHHHHH
Q 002376          884 IIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       884 ~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+.+++.+||+.+|++||++.|+++
T Consensus       245 ~l~~li~~~l~~~P~~R~~~~~ll~  269 (292)
T cd06657         245 SLKGFLDRLLVRDPAQRATAAELLK  269 (292)
T ss_pred             HHHHHHHHHHhCCcccCcCHHHHhc
Confidence            2233777999999999999999887

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.93  E-value=6.1e-27  Score=258.49  Aligned_cols=220  Identities=25%  Similarity=0.333  Sum_probs=157.6

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      |+..+.||+|+||.||+++...                   ..+.+.+|++++++++|||++++++++.+..     ..+
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-----~~~  101 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREH-----TAW  101 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCC-----eEE
Confidence            5667889999999999987531                   1246888999999999999999999986533     479


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||++ |++.+.+....         .++.+++.|+.|||+.   +|+||||||+||++++++.+||+|||++.....
T Consensus       102 lv~e~~~-g~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~  177 (317)
T cd06635         102 LVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASIASP  177 (317)
T ss_pred             EEEeCCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcccEEECCCCCEEEecCCCccccCC
Confidence            9999996 57777664211         2357899999999998   999999999999999999999999999875421


Q ss_pred             ccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                                .....|++.|+|||++.   .+.++.++||||+|++++++.....++.....  .+.    .........
T Consensus       178 ----------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~~~~--~~~----~~~~~~~~~  241 (317)
T cd06635         178 ----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSA----LYHIAQNES  241 (317)
T ss_pred             ----------cccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCCCCccH--HHH----HHHHHhccC
Confidence                      12346889999999974   45689999999999877765443322211110  000    011000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                       ... ..+.....+++++.+||+.+|++||++.|+++.
T Consensus       242 -~~~-~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~  277 (317)
T cd06635         242 -PTL-QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKH  277 (317)
T ss_pred             -CCC-CCccccHHHHHHHHHHccCCcccCcCHHHHHhC
Confidence             000 011122334458889999999999999999874

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.2e-26  Score=247.14  Aligned_cols=230  Identities=22%  Similarity=0.263  Sum_probs=166.0

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+|+..+.||+|+||.||+|....                     ..+.+.+|++++++++||||+++++++.+.+   .
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~---~   78 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPE---E   78 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCC---C
Confidence            468889999999999999986531                     1246788999999999999999999885432   2


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++||||+++++|.+++....        .++.+++.|++|||+.   +++||||||+||+++.++.+||+|||+++.
T Consensus        79 ~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~---~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~  155 (264)
T cd06653          79 KKLSIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSN---MIVHRDIKGANILRDSAGNVKLGDFGASKR  155 (264)
T ss_pred             CEEEEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCEEECccccccc
Confidence            35789999999999998876322        2357899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ......   .........|+..|+|||++.+..++.++||||+|++++++.....++..... ...     +......  
T Consensus       156 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-~~~-----~~~~~~~--  224 (264)
T cd06653         156 IQTICM---SGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEYEA-MAA-----IFKIATQ--  224 (264)
T ss_pred             cccccc---cCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCccCH-HHH-----HHHHHcC--
Confidence            532111   11112335689999999999988899999999999877775544333322111 111     1111100  


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......++.+.+.+++++.+|++ +|.+||++.+++.
T Consensus       225 ~~~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~  260 (264)
T cd06653         225 PTKPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLR  260 (264)
T ss_pred             CCCCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhc
Confidence            00111222344445557779999 5799999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.93  E-value=9.1e-27  Score=248.76  Aligned_cols=230  Identities=26%  Similarity=0.327  Sum_probs=168.3

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|++|.||+|....                  ..+.+.+|+.++++++||||+++++++....   ....+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~---~~~~~   77 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEE---KNTLN   77 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCC---CCeEE
Confidence            46778999999999999987641                  1457889999999999999999999986531   24589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++++|.+++....        .++.+++.|++|||+.   +++|+|++|+||++++++.+||+|||.+......
T Consensus        78 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  154 (260)
T cd06606          78 IFLEYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSN---GIVHRDIKGANILVDSDGVVKLADFGCAKRLGDI  154 (260)
T ss_pred             EEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEcCCCCEEEcccccEEecccc
Confidence            9999999999999886442        2367899999999997   9999999999999999999999999999876432


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      ...    .......++..|+|||...+..++.++|||++|++++++.....++.........     ......  .....
T Consensus       155 ~~~----~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~-----~~~~~~--~~~~~  223 (260)
T cd06606         155 ETG----EGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATGKPPWSELGNPMAA-----LYKIGS--SGEPP  223 (260)
T ss_pred             ccc----ccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHH-----HHhccc--cCCCc
Confidence            110    0123346889999999999888999999999998776654433333222211000     011000  00001


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..++.....+.+++.+|++.+|++||++.|+++
T Consensus       224 ~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~  256 (260)
T cd06606         224 EIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQ  256 (260)
T ss_pred             CCCcccCHHHHHHHHHhCcCChhhCCCHHHHhh
Confidence            111122333444777999999999999999975

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.93  E-value=8.1e-27  Score=258.45  Aligned_cols=177  Identities=27%  Similarity=0.318  Sum_probs=142.1

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      ++...+++|+..+.||+|+||.||++....                  ..+.+.+|++++++++||||+++++++.... 
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-   82 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPL-   82 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC-
Confidence            345678899999999999999999986441                  2356788999999999999999999885422 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                         ...++||||+ +++|.++++...       .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||.+
T Consensus        83 ---~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~dl~p~Nili~~~~~~~l~dfg~~  155 (328)
T cd07856          83 ---EDIYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSA---GVVHRDLKPSNILINENCDLKICDFGLA  155 (328)
T ss_pred             ---CcEEEEeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEeECCCCCEEeCccccc
Confidence               2479999999 568888775322       2367899999999998   9999999999999999999999999998


Q ss_pred             cccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      +.....         .....++..|+|||++.+ ..++.++||||+|++++++.++..++
T Consensus       156 ~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f  206 (328)
T cd07856         156 RIQDPQ---------MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLF  206 (328)
T ss_pred             cccCCC---------cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCC
Confidence            754211         122367889999998766 56899999999998888876554433

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.93  E-value=8e-27  Score=259.29  Aligned_cols=247  Identities=24%  Similarity=0.268  Sum_probs=171.6

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+|+...                  ..+.+.+|+.+++.++||||+++.+++...+.......|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            47788999999999999987541                  235788999999999999999999998765432334589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||++ ++|.++++...        .++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||++......
T Consensus        81 lv~e~~~-~~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~  156 (330)
T cd07834          81 IVTELME-TDLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSA---NVIHRDLKPSNILVNSNCDLKICDFGLARGVDPD  156 (330)
T ss_pred             EEecchh-hhHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccCceEeeccc
Confidence            9999997 58888876432        2467899999999998   9999999999999999999999999999876432


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhh---------------
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQ---------------  857 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~---------------  857 (929)
                      ...   ........++..|+|||++.+. .++.++||||+|++++++.....++..... . ...               
T Consensus       157 ~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~  233 (330)
T cd07834         157 EDE---KGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAELLTRKPLFPGRDYIDQLNLIVEVLGTPSEEDLKF  233 (330)
T ss_pred             ccc---cccccccccccCcCCceeeecccCCCcchhHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHhcCCCChhHhhh
Confidence            110   0112334678999999999888 799999999999887776555443322111 0 000               


Q ss_pred             ccChHHHHhhcccc-hhhhhh---hHHHHHHHHHHhccccCCCCCCCCCHHHHHHH--HHhhHH
Q 002376          858 VLDPELRQLMTSNE-SQTIQL---HDCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSSQE  915 (929)
Q Consensus       858 ~~~~~l~~~~~~~~-~~~~~~---~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~~~  915 (929)
                      .............. ......   ...+...+.+++.+||+.+|++||+++++++.  ++++..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         234 ITSEKARNYLKSLPKKPKKPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             ccccchhhHHhhcccCCcchhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            00000000000000 000000   00112223348889999999999999999863  655443

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.93  E-value=6.6e-27  Score=258.22  Aligned_cols=174  Identities=27%  Similarity=0.405  Sum_probs=135.9

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|+..+.||+|+||.||+|....                     ..+.+.+|+.++++++||||+++++++...   ...
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~   77 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEH---ADK   77 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCC---CCc
Confidence            46778899999999999988642                     124567899999999999999999999653   224


Q ss_pred             eEEEEEEecCCCCcccccccc-------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC----CCceEE
Q 002376          721 FLALVYEFLSNGSLGDWIHGE-------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE----EMTAKV  783 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~-------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~----~~~~ki  783 (929)
                      ..++||||+++ ++.+++...             ..++.|++.|++|||+.   +|+||||||+||+++.    ++.+||
T Consensus        78 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~dlkp~Nil~~~~~~~~~~~kl  153 (316)
T cd07842          78 SVYLLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHRDLKPANILVMGEGPERGVVKI  153 (316)
T ss_pred             eEEEEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCCHHHEEEcCCCCccceEEE
Confidence            58999999974 666655311             12357899999999998   8999999999999999    999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhH
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      +|||+++.......   .........+++.|+|||++.+. .++.++||||+|++++++....
T Consensus       154 ~Dfg~~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~  213 (316)
T cd07842         154 GDLGLARLFNAPLK---PLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCIFAELLTLE  213 (316)
T ss_pred             CCCccccccCCCcc---cccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence            99999986532211   11122345789999999988764 5899999999998887765443

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.93  E-value=5e-27  Score=258.32  Aligned_cols=175  Identities=29%  Similarity=0.361  Sum_probs=137.8

Q ss_pred             hCCCCCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|.....                  ...+.+|+.++++++||||+++++++....   ...
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~~~   82 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKH---LDS   82 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCC---CCe
Confidence            46789999999999999999876410                  124668999999999999999999986422   235


Q ss_pred             EEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||++ ++|.+++...         ..++.|++.|++|||+.   +++||||||+||++++++.+||+|||+++..
T Consensus        83 ~~lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~  158 (309)
T cd07845          83 IFLVMEYCE-QDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHEN---FIIHRDLKVSNLLLTDKGCLKIADFGLARTY  158 (309)
T ss_pred             EEEEEecCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCEEECccceeeec
Confidence            799999996 4787776532         23467899999999998   8999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ....      .......+++.|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       159 ~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~  208 (309)
T cd07845         159 GLPA------KPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPL  208 (309)
T ss_pred             CCcc------CCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCC
Confidence            3211      11122345788999999876 4579999999999888886555433

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.93  E-value=7.5e-27  Score=256.64  Aligned_cols=221  Identities=28%  Similarity=0.353  Sum_probs=156.7

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .|+..+.||+|+||.||+|+...                   ..+++.+|+++++.++|||++++.+++...     ...
T Consensus        16 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~   90 (308)
T cd06634          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-----HTA   90 (308)
T ss_pred             HHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcC-----Cee
Confidence            36667889999999999887531                   124677899999999999999999998653     347


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++||||+. |++.+++....         ..+.+++.|++|||+.   +++||||||+||+++.++.+|++|||++....
T Consensus        91 ~lv~e~~~-~~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~  166 (308)
T cd06634          91 WLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMA  166 (308)
T ss_pred             EEEEEccC-CCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHhEEECCCCcEEECCcccceeec
Confidence            99999996 68777664211         2356899999999998   99999999999999999999999999987542


Q ss_pred             cccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .          .....|++.|+|||++.   ...++.++||||+|++++++.....++.....  .    ........ .
T Consensus       167 ~----------~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--~----~~~~~~~~-~  229 (308)
T cd06634         167 P----------ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--M----SALYHIAQ-N  229 (308)
T ss_pred             C----------cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCCccccH--H----HHHHHHhh-c
Confidence            1          12346889999999974   35688999999999887765443322211110  0    00010000 0


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...... .......+.+++.+||+.+|++||++.+++..
T Consensus       230 ~~~~~~-~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~  267 (308)
T cd06634         230 ESPALQ-SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH  267 (308)
T ss_pred             CCCCcC-cccccHHHHHHHHHHhhCCcccCCCHHHHhhC
Confidence            000000 01122233347779999999999999998754

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.93  E-value=1.8e-26  Score=247.14  Aligned_cols=223  Identities=22%  Similarity=0.308  Sum_probs=158.9

Q ss_pred             CCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      +|...+.||+|+||.||+++...                     ...++..|+.++++++||||+++++++.+.+     
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   75 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERD-----   75 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCC-----
Confidence            47778999999999999875531                     1224667999999999999999999985433     


Q ss_pred             eEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ..++||||+++++|.+++...            ..++.|++.|++|||+.   +++|+|+||+||++++ +.+|++|||+
T Consensus        76 ~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~~l~~~nili~~-~~~~l~d~g~  151 (260)
T cd08222          76 AFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR---RILHRDLKAKNIFLKN-NLLKIGDFGV  151 (260)
T ss_pred             ceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc---CccccCCChhheEeec-CCEeecccCc
Confidence            379999999999999887531            12356899999999998   9999999999999986 5699999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ++......      .......|++.|+|||...+..++.++||||+|++++++.....++...  ...+..    .....
T Consensus       152 ~~~~~~~~------~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~~~~~~~--~~~~~~----~~~~~  219 (260)
T cd08222         152 SRLLMGSC------DLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLAHAFEGQ--NFLSVV----LRIVE  219 (260)
T ss_pred             eeecCCCc------ccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCc--cHHHHH----HHHHc
Confidence            88653211      1112346789999999998888999999999998776654433322111  111100    01000


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ..  ...........+.+++.+||+.+|++||++.|+++
T Consensus       220 -~~--~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~  256 (260)
T cd08222         220 -GP--TPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILR  256 (260)
T ss_pred             -CC--CCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhh
Confidence             00  00111122223334777999999999999999975

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.93  E-value=8.8e-27  Score=252.10  Aligned_cols=218  Identities=24%  Similarity=0.254  Sum_probs=154.6

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||+||++....                   ..+.+.+|++++++++||||+++++++..     ....|+||||+
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-----~~~~~lv~e~~   75 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFET-----KDDLCLVMTLM   75 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEec-----CCeEEEEEecC
Confidence            6999999999886441                   12356789999999999999999998854     33589999999


Q ss_pred             CCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          730 SNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       730 ~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      ++++|.+++....          .++.|++.|+.|||+.   +++||||||+||++++++.+|++|||.++.....    
T Consensus        76 ~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~----  148 (277)
T cd05577          76 NGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQR---RIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG----  148 (277)
T ss_pred             CCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEECCCCCEEEccCcchhhhccC----
Confidence            9999998886432          1256899999999998   9999999999999999999999999998765321    


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                         .......|+..|+|||++.+..++.++||||+|++++++.....++......   .....+........   ...+.
T Consensus       149 ---~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~---~~~~~  219 (277)
T cd05577         149 ---KKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQRKEK---VEKEELKRRTLEMA---VEYPD  219 (277)
T ss_pred             ---CccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCCCccc---ccHHHHHhcccccc---ccCCc
Confidence               1112346788999999998888999999999998777765444433222110   00111111000000   00111


Q ss_pred             HHHHHHHHHhccccCCCCCCCC-----CHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRI-----GIREAL  907 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~  907 (929)
                      ....-+.+++.+||+.||++||     ++.+++
T Consensus       220 ~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll  252 (277)
T cd05577         220 KFSPEAKDLCEALLQKDPEKRLGCRGGSADEVR  252 (277)
T ss_pred             cCCHHHHHHHHHHccCChhHccCCCcccHHHHH
Confidence            1122233477799999999999     555554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.93  E-value=8.7e-27  Score=258.58  Aligned_cols=173  Identities=17%  Similarity=0.206  Sum_probs=130.2

Q ss_pred             eeeccc--CceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSG--SFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G--~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ..||+|  +||+||++++..                  ..+.+.+|+.+++.++||||+++++++...     ...++||
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-----~~~~~v~   78 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTG-----SWLWVIS   78 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecC-----CceEEEE
Confidence            356666  999999987641                  135678899999999999999999999653     3479999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||+++|++.+++....          .++.|++.||+|||+.   +|+||||||+||+++.++.+|++|||.+.......
T Consensus        79 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~  155 (328)
T cd08226          79 PFMAYGSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQN---GYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNG  155 (328)
T ss_pred             ecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEeCCCcEEEechHHHhhhhccC
Confidence            9999999999886421          2367899999999987   99999999999999999999999998654332111


Q ss_pred             CCCC-CccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          797 DNQS-SISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       797 ~~~~-~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      .... .........++..|||||++.+.  .++.++||||+|++++++.....+
T Consensus       156 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~l~el~~g~~p  209 (328)
T cd08226         156 QKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGITACELATGRVP  209 (328)
T ss_pred             ccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence            1100 00011122456779999998764  478999999999888776544333

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.93  E-value=9.8e-27  Score=253.56  Aligned_cols=226  Identities=20%  Similarity=0.257  Sum_probs=160.5

Q ss_pred             CCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~  717 (929)
                      +|+..+.||+|+||.||+++..                       ...+.+.+|+++++++ +||||+++++++..    
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----   76 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQT----   76 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeec----
Confidence            4677899999999999987642                       1124577899999999 59999999988743    


Q ss_pred             CcceEEEEEEecCCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                       ....++||||+++|+|.+++.....        ++.|++.||+|||+.   +++||||||+||++++++.+||+|||++
T Consensus        77 -~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~i~H~dl~p~nil~~~~~~~kl~dfg~~  152 (290)
T cd05613          77 -DTKLHLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS  152 (290)
T ss_pred             -CCeEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeEECCCCCEEEeeCccc
Confidence             2347999999999999998864322        245899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHHHH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPELRQ  865 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~  865 (929)
                      +......     ........|+..|+|||++.+.  .++.++||||+|++++++.....++.....  ...++.+. .. 
T Consensus       153 ~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~~~~~~~~~~-~~-  225 (290)
T cd05613         153 KEFHEDE-----VERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRR-IL-  225 (290)
T ss_pred             eeccccc-----ccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHHHHhcCCCCCCcCCccccHHHHHHH-hh-
Confidence            8653211     1112235689999999998753  468899999999888776655444321111  11111110 00 


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                        .....    .+..+...+.+++.+|++.||++||     ++++++.
T Consensus       226 --~~~~~----~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~  267 (290)
T cd05613         226 --KSEPP----YPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKK  267 (290)
T ss_pred             --ccCCC----CCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHc
Confidence              00111    1111223344477799999999997     6666654

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.93  E-value=2.5e-26  Score=246.94  Aligned_cols=230  Identities=21%  Similarity=0.240  Sum_probs=160.1

Q ss_pred             HHHHHhhCCCCCceee--cccCceeEEeccccCc----------HHHH-HHHHHHHHcc-CCccccceeeecccCCCCCc
Q 002376          654 DELRRATGNFSHENLI--GSGSFGSVLHNERTGS----------WKSF-IAECETLRNV-RHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~i--G~G~~g~Vy~~~~~~~----------~~~~-~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+.....++|+..+.+  |+|+||.||++.....          .+.+ ..|+.....+ +||||+++++++...+    
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~----   82 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAIEPMVHQLMKDNPNFIKLYYSVTTLK----   82 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchhhHHHHHHhhcCCCEEEEEEEEecCC----
Confidence            4445555677777766  9999999999876521          1111 1133333323 7999999999986533    


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~  790 (929)
                       ..++||||+++|+|.++++...        .++.|+++|++|||+.   +++||||||+||+++.++ .++|+|||+++
T Consensus        83 -~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~nil~~~~~~~~~l~dfg~~~  158 (267)
T PHA03390         83 -GHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKH---NIIHNDIKLENVLYDRAKDRIYLCDYGLCK  158 (267)
T ss_pred             -eeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEeCCCCeEEEecCccce
Confidence             4899999999999999986542        2367899999999998   899999999999999998 99999999987


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChH-HHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPE-LRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~  869 (929)
                      ....          .....|+..|+|||++.+..++.++||||+|++++++.....++.....   +.++.. +......
T Consensus       159 ~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~  225 (267)
T PHA03390        159 IIGT----------PSCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDED---EELDLESLLKRQQK  225 (267)
T ss_pred             ecCC----------CccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCc---chhhHHHHHHhhcc
Confidence            5421          1123688999999999998999999999999887776555444332111   111111 1111111


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-HHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-IREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~ev~~  908 (929)
                          .....+.....+.+++.+|++.+|++||+ ++|+++
T Consensus       226 ----~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l~  261 (267)
T PHA03390        226 ----KLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEIIK  261 (267)
T ss_pred             ----cCCcccccCHHHHHHHHHHhccChhhCCchHHHHhc
Confidence                01111112233344777999999999996 588763

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.93  E-value=1e-26  Score=253.99  Aligned_cols=171  Identities=28%  Similarity=0.370  Sum_probs=134.4

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|++|.||+|....                  ..+.+.+|++++++++||||+++++++...     ...
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~   76 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSE-----KRL   76 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecC-----CeE
Confidence            578889999999999999987541                  124678899999999999999999998543     358


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEeccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARF  791 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~  791 (929)
                      ++||||++ +++.+++....          ..+.||+.||+|||+.   +++||||||+||++++ ++.+||+|||+++.
T Consensus        77 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~dl~p~nill~~~~~~~kl~dfg~~~~  152 (294)
T PLN00009         77 YLVFEYLD-LDLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSH---RVLHRDLKPQNLLIDRRTNALKLADFGLARA  152 (294)
T ss_pred             EEEEeccc-ccHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCcceEEEECCCCEEEEcccccccc
Confidence            99999996 57877664221          2356899999999998   9999999999999985 55799999999975


Q ss_pred             cccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ....      ........|++.|+|||++.+. .++.++||||+|++++++.....
T Consensus       153 ~~~~------~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~  202 (294)
T PLN00009        153 FGIP------VRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKP  202 (294)
T ss_pred             cCCC------ccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCC
Confidence            4221      1111233678999999988764 57999999999988777655433

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.93  E-value=6.8e-27  Score=256.39  Aligned_cols=178  Identities=29%  Similarity=0.411  Sum_probs=138.2

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC---
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS---  716 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~---  716 (929)
                      .+.++|+..+.||+|+||.||+|....                  ....+.+|++++++++||||+++++++.+...   
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            456789999999999999999988641                  12456789999999999999999999865431   


Q ss_pred             --CCcceEEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEec
Q 002376          717 --KNMEFLALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       717 --~~~~~~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                        ......++|+||+++ ++.+.+...         ..++.|++.||+|||+.   +|+||||||+||++++++.+||+|
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~dl~p~nili~~~~~~kl~d  159 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKK---NFLHRDIKCSNILLNNKGQIKLAD  159 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCcEEeCc
Confidence              112368999999975 666655432         13357899999999998   999999999999999999999999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchh
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ||.++.......     .......++..|+|||++.+. .++.++||||+|++++++...
T Consensus       160 fg~~~~~~~~~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g  214 (302)
T cd07864         160 FGLARLYNSEES-----RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTK  214 (302)
T ss_pred             ccccccccCCcc-----cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhC
Confidence            999986532211     111223567889999988654 578999999999887776543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.93  E-value=4.7e-27  Score=217.21  Aligned_cols=165  Identities=28%  Similarity=0.459  Sum_probs=134.6

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .|+..++||+|.||+||+|+..                  +......+|+.+++.++|.|||+++++..+     .....
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhs-----dkklt   77 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHS-----DKKLT   77 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhcc-----CceeE
Confidence            4667789999999999999865                  223567899999999999999999999854     33489


Q ss_pred             EEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +|+|||. .+|..+...         .+....|+.+|+.|+|++   .+.|||+||.|.||+.+|+.|++|||+||.+.-
T Consensus        78 lvfe~cd-qdlkkyfdslng~~d~~~~rsfmlqllrgl~fchsh---nvlhrdlkpqnllin~ngelkladfglarafgi  153 (292)
T KOG0662|consen   78 LVFEFCD-QDLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSH---NVLHRDLKPQNLLINRNGELKLADFGLARAFGI  153 (292)
T ss_pred             EeHHHhh-HHHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhh---hhhhccCCcceEEeccCCcEEecccchhhhcCC
Confidence            9999995 466665542         234578999999999998   899999999999999999999999999997632


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEF  841 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~  841 (929)
                      .      .......+-|.+|++|.++.|.+ |+++.|+||.||+..|+
T Consensus       154 p------vrcysaevvtlwyrppdvlfgakly~tsidmwsagcifael  195 (292)
T KOG0662|consen  154 P------VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAEL  195 (292)
T ss_pred             c------eEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHH
Confidence            1      22223346799999999998876 89999999999876554

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.93  E-value=2.1e-26  Score=249.78  Aligned_cols=231  Identities=23%  Similarity=0.294  Sum_probs=156.7

Q ss_pred             CCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|+||.||+|....                 ......+|+.+++++. |||++++++++.+..   .+..++
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~---~~~~~l   77 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRK---TGRLAL   77 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCC---CCcEEE
Confidence            5667899999999999987541                 1123457888999885 999999999986531   235899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||++ |++.+++....         .++.|++.||+|||+.   +++||||||+||++++ +.+||+|||+++.+...
T Consensus        78 v~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~  152 (282)
T cd07831          78 VFELMD-MNLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRN---GIFHRDIKPENILIKD-DILKLADFGSCRGIYSK  152 (282)
T ss_pred             EEecCC-ccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEcC-CCeEEEecccccccccC
Confidence            999996 58877775322         2367899999999998   9999999999999999 99999999999865321


Q ss_pred             cCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hh---hhcc---ChHHHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NV---LQVL---DPELRQL  866 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~---~~~~---~~~l~~~  866 (929)
                             .......++..|+|||++.. ..++.++||||+|++++++.....++.....  .+   .+..   .+.+...
T Consensus       153 -------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (282)
T cd07831         153 -------PPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPLFPGTNELDQIAKIHDVLGTPDAEVLKK  225 (282)
T ss_pred             -------CCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCcCCCCCCHHHHHHHHHHHcCCCCHHHHHh
Confidence                   11122457899999997654 5578999999999888876554333321110  00   0000   0000000


Q ss_pred             hcccchhhh-----------hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNESQTI-----------QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~~~~~-----------~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .........           ......+..+.+++.+||+.+|++||+++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~  278 (282)
T cd07831         226 FRKSRHMNYNFPSKKGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALR  278 (282)
T ss_pred             hcccccccccCcccccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhh
Confidence            000000000           000111233334888999999999999999875

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.93  E-value=7.1e-27  Score=260.72  Aligned_cols=181  Identities=24%  Similarity=0.337  Sum_probs=138.0

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC------
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN------  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~------  718 (929)
                      .+|...+.||+|+||.||+|....                ..+.+.+|++++++++||||+++++++.......      
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            578889999999999999987641                2456889999999999999999998876533211      


Q ss_pred             ---cceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEeccc
Q 002376          719 ---MEFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFG  787 (929)
Q Consensus       719 ---~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfG  787 (929)
                         ....++||||++ ++|.+++...       +.++.|++.||+|||+.   +|+||||||+||+++ +++.+|++|||
T Consensus        85 ~~~~~~~~lv~e~~~-~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givH~dikp~Nili~~~~~~~kl~dfg  160 (342)
T cd07854          85 LTELNSVYIVQEYME-TDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANVFINTEDLVLKIGDFG  160 (342)
T ss_pred             ccccceEEEEeeccc-ccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCceEEECCcc
Confidence               135799999997 5888776532       23467999999999998   999999999999997 45678999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .++.+......   ........|+..|+|||++.+ ..++.++||||+|++++++.....++
T Consensus       161 ~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf  219 (342)
T cd07854         161 LARIVDPHYSH---KGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLF  219 (342)
T ss_pred             cceecCCcccc---ccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCC
Confidence            99865321111   111122367889999998654 45889999999998888765544433

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.93  E-value=1.2e-26  Score=252.12  Aligned_cols=169  Identities=24%  Similarity=0.402  Sum_probs=135.3

Q ss_pred             CCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +|+..+.||+|++|.||+|+...                 ..+.+.+|++++++++||||+++++++...+     ..++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~~~l   75 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTEN-----KLML   75 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCC-----cEEE
Confidence            47888999999999999988641                 1346778999999999999999999986533     4799


Q ss_pred             EEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ||||++ |+|.+++....           .++.|++.||+|||+.   +++||||||+||++++++.+|++|||+++...
T Consensus        76 v~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~  151 (284)
T cd07836          76 VFEYMD-KDLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHEN---RVLHRDLKPQNLLINKRGELKLADFGLARAFG  151 (284)
T ss_pred             EEecCC-ccHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEECCCCcEEEeecchhhhhc
Confidence            999998 48888765321           2357899999999987   99999999999999999999999999997653


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhH
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ...      .......++..|+|||++.+. .++.++|||++|++++++....
T Consensus       152 ~~~------~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~  198 (284)
T cd07836         152 IPV------NTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGR  198 (284)
T ss_pred             CCc------cccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            211      111223578899999988664 4789999999998877765443

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.93  E-value=1.4e-26  Score=255.53  Aligned_cols=235  Identities=17%  Similarity=0.186  Sum_probs=158.5

Q ss_pred             ceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      .+.+|.|+++.||+++..                ...+.+.+|++++++++||||+++++++...     ...+++|||+
T Consensus         7 ~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~-----~~~~~~~e~~   81 (314)
T cd08216           7 GKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVD-----SELYVVSPLM   81 (314)
T ss_pred             hHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecC-----CeEEEEEecc
Confidence            445566677777766553                1235788999999999999999999988543     3489999999


Q ss_pred             CCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC
Q 002376          730 SNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ  799 (929)
Q Consensus       730 ~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~  799 (929)
                      ++|+|.++++..          ..++.|++.||+|||+.   +|+||||||+||++++++.+|++|||.+..+.......
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~  158 (314)
T cd08216          82 AYGSCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSK---GFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQ  158 (314)
T ss_pred             CCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEecCCceEEecCccceeeccccccc
Confidence            999999988642          12367899999999998   99999999999999999999999999987653221110


Q ss_pred             -CCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCch--hhhc--------cChHHHHh
Q 002376          800 -SSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPEN--VLQV--------LDPELRQL  866 (929)
Q Consensus       800 -~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~l~~~  866 (929)
                       ..........++..|+|||++.+.  .++.++||||+|++++++.....++...+..  ..+.        ++......
T Consensus       159 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (314)
T cd08216         159 RVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPL  238 (314)
T ss_pred             cccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCccccccCchhh
Confidence             011112334678899999998764  5889999999998887765544443322210  0000        00000000


Q ss_pred             h----c----------ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 M----T----------SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~----~----------~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    .          ............+...+.+++.+||+.||++|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~  294 (314)
T cd08216         239 YEDSMSQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLN  294 (314)
T ss_pred             hcCCcCcccccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhc
Confidence            0    0          0000000011112223344888999999999999999985

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.93  E-value=1.7e-26  Score=250.67  Aligned_cols=231  Identities=24%  Similarity=0.311  Sum_probs=162.1

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|++|.||++....                  ..+.+.+|++++++++||||+++++++...     ...++
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~~   75 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHK-----GDLYL   75 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccC-----CCEEE
Confidence            5567899999999999987641                  134678899999999999999999998653     34899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||+++ ++.+++...         ..++.+++.|++|||+.   +|+||||||+||++++++.+||+|||.+......
T Consensus        76 v~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~  151 (283)
T cd05118          76 VFEFMDT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSH---GILHRDLKPENLLINTEGVLKLADFGLARSFGSP  151 (283)
T ss_pred             EEeccCC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHC---CeeecCcCHHHEEECCCCcEEEeeeeeeEecCCC
Confidence            9999975 888777542         12367899999999998   9999999999999999999999999999866432


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc----cC--hHHHH-
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV----LD--PELRQ-  865 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~----~~--~~l~~-  865 (929)
                      .      .......++..|+|||.+.+. .++.++||||+|++++++.....++.....  ....+    .+  +.... 
T Consensus       152 ~------~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (283)
T cd05118         152 V------RPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPK  225 (283)
T ss_pred             c------ccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCchHhccc
Confidence            1      111224578899999998877 789999999999888776555433221110  00000    00  00000 


Q ss_pred             ----------hhcccch-hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 ----------LMTSNES-QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ----------~~~~~~~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                                ....... ........+...+.+++.+||++||.+||++.|++.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~  279 (283)
T cd05118         226 FTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALA  279 (283)
T ss_pred             chhhhhhhhhhhccccccCHHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhh
Confidence                      0000000 000011122333445888999999999999999875

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.93  E-value=1.1e-26  Score=251.41  Aligned_cols=218  Identities=21%  Similarity=0.229  Sum_probs=151.4

Q ss_pred             eecccCceeEEeccccCc-------------------HHHHHHHHH---HHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          668 LIGSGSFGSVLHNERTGS-------------------WKSFIAECE---TLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~---~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .||+|+||.||+++....                   ...+..|..   .++..+||+|+++.+++.+.     ...++|
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~v   75 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP-----DKLSFI   75 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecC-----CEEEEE
Confidence            489999999998765310                   112344443   34445799999999988543     358999


Q ss_pred             EEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          726 YEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||+++|+|.+++....        .++.|+++|++|||+.   +|+||||||+||++++++.+||+|||+++.....  
T Consensus        76 ~e~~~g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~--  150 (278)
T cd05606          76 LDLMNGGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACDFSKK--  150 (278)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCCCCHHHEEECCCCCEEEccCcCccccCcc--
Confidence            99999999998875332        3467899999999997   8999999999999999999999999998754211  


Q ss_pred             CCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            ......|+..|+|||++.++ .++.++||||+|++++++.....++...........+....   .....    
T Consensus       151 ------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~p~~~~~~~~~~~~~~~~~---~~~~~----  217 (278)
T cd05606         151 ------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTL---TMAVE----  217 (278)
T ss_pred             ------CCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCCCCCCCCccchHHHHHHhh---ccCCC----
Confidence                  11234689999999998755 58999999999988877665554443221100010111110   00011    


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      .+...+.-+.+++.+|+..+|++||     ++.|+++
T Consensus       218 ~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~  254 (278)
T cd05606         218 LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  254 (278)
T ss_pred             CCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHh
Confidence            1111122233477799999999999     9999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.93  E-value=5.9e-26  Score=242.39  Aligned_cols=224  Identities=24%  Similarity=0.354  Sum_probs=164.3

Q ss_pred             CCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||++...                  ...+.+.+|+++++.++|||++++.+.+...     ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~-----~~~~   75 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEK-----GKLC   75 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecC-----CEEE
Confidence            4777899999999999988765                  1235688999999999999999999988543     4589


Q ss_pred             EEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +|+||+++++|.++++...            .++.+++.|++|||+.   +++|+||+|+||++++++.+||+|||++..
T Consensus        76 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~dl~~~nil~~~~~~~~l~d~~~~~~  152 (258)
T cd08215          76 IVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSR---KILHRDIKPQNIFLTSNGLVKLGDFGISKV  152 (258)
T ss_pred             EEEEecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHHeEEcCCCcEEECCccceee
Confidence            9999999999999886532            2356899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .....      .......|++.|+|||...+..++.++|||++|++++++.....++...  ...++..........   
T Consensus       153 ~~~~~------~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~--~~~~~~~~~~~~~~~---  221 (258)
T cd08215         153 LSSTV------DLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKHPFEGE--NLLELALKILKGQYP---  221 (258)
T ss_pred             cccCc------ceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCCCCCCC--cHHHHHHHHhcCCCC---
Confidence            53221      1122346889999999999989999999999997766644333222111  111111111110000   


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          ..+......+.+++.+||+.+|++||++.|+++
T Consensus       222 ----~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~  254 (258)
T cd08215         222 ----PIPSQYSSELRNLVSSLLQKDPEERPSIAQILQ  254 (258)
T ss_pred             ----CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence                001111222334777999999999999999875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.93  E-value=1.3e-26  Score=251.94  Aligned_cols=173  Identities=26%  Similarity=0.393  Sum_probs=136.8

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|+||.||+|....                  ..+.+.+|++++++++|||++++++++...+   ....++
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~---~~~~~l   77 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKG---KGSIYM   77 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCC---CCcEEE
Confidence            5667899999999999987642                  1346889999999999999999999986531   245899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||++ ++|.+++...         ..++.+++.|++|||+.   +++|+||||+||++++++.+||+|||+++.....
T Consensus        78 v~e~~~-~~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~  153 (287)
T cd07840          78 VFEYMD-HDLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSN---GILHRDIKGSNILINNDGVLKLADFGLARPYTKR  153 (287)
T ss_pred             Eecccc-ccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEEcCCCCEEEccccceeeccCC
Confidence            999997 4888877543         13367899999999998   8999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ..     .......++..|+|||.+.+. .++.++|||++|++++++.....+
T Consensus       154 ~~-----~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~~~p  201 (287)
T cd07840         154 NS-----ADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLGKPI  201 (287)
T ss_pred             Cc-----ccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhCCCC
Confidence            11     112233568899999987654 579999999999888876554433

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=1.9e-26  Score=246.98  Aligned_cols=221  Identities=24%  Similarity=0.267  Sum_probs=154.6

Q ss_pred             eeecccCceeEEeccccCc-------------------HHHHHHHHHHH-HccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERTGS-------------------WKSFIAECETL-RNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l-~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||.||+|.....                   ...+..|..++ ...+|||++++++++...     ...|+||
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-----~~~~lv~   76 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSK-----DYLYLVM   76 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcC-----CeEEEEE
Confidence            4689999999999876410                   11234454443 445899999999998543     3589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      ||+++|+|.++++...        .++.|++.||+|||+.   +++||||||+||++++++.+||+|||+++....    
T Consensus        77 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~----  149 (260)
T cd05611          77 EYLNGGDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQR---GIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE----  149 (260)
T ss_pred             eccCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCcEEEeecccceeccc----
Confidence            9999999999886422        3367899999999998   999999999999999999999999999875421    


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                            .....|++.|+|||.+.+..++.++||||+|++++++.++..++.....  .+..........    .......
T Consensus       150 ------~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~----~~~~~~~  217 (260)
T cd05611         150 ------NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFHAETP--DAVFDNILSRRI----NWPEEVK  217 (260)
T ss_pred             ------cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhccc----CCCCccc
Confidence                  1234688999999999888899999999999888776555544322211  111111111000    0000011


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      +.+..-+.+++.+||+.+|++||++.++.+.+.
T Consensus       218 ~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~  250 (260)
T cd05611         218 EFCSPEAVDLINRLLCMDPAKRLGANGYQEIKS  250 (260)
T ss_pred             ccCCHHHHHHHHHHccCCHHHccCCCcHHHHHc
Confidence            112222334777999999999998876655543

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=6.4e-27  Score=269.89  Aligned_cols=183  Identities=26%  Similarity=0.314  Sum_probs=149.2

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      ..+++...++|.+.++||+|+||.|..++.+.                   +...|..|-.+|..-+.+.||+++..|  
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAF--  144 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAF--  144 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHh--
Confidence            35666677899999999999999998877752                   234577899999999999999999888  


Q ss_pred             CCCCCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEec
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                         ++..++|+|||||+||+|-..+.+.        +.+...|..||.-+|+.   |+|||||||.|||+|..|++|++|
T Consensus       145 ---QD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~m---gyVHRDiKPDNvLld~~GHikLAD  218 (1317)
T KOG0612|consen  145 ---QDERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSM---GYVHRDIKPDNVLLDKSGHIKLAD  218 (1317)
T ss_pred             ---cCccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhc---cceeccCCcceeEecccCcEeecc
Confidence               4456699999999999998877643        34466788999999997   999999999999999999999999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccC----C-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL----G-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ||.+-.+...     ........+|||-|++||++.    + +.|+..+|-||+|+++|||..+.-++
T Consensus       219 FGsClkm~~d-----G~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPF  281 (1317)
T KOG0612|consen  219 FGSCLKMDAD-----GTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPF  281 (1317)
T ss_pred             chhHHhcCCC-----CcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcc
Confidence            9988766432     112334568999999999875    3 56999999999999888876555443

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.93  E-value=1.1e-26  Score=259.18  Aligned_cols=177  Identities=24%  Similarity=0.346  Sum_probs=139.7

Q ss_pred             HHHhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      +....++|+..+.||+|+||.||++....                  ..+.+.+|++++++++||||+++++++......
T Consensus        10 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   89 (343)
T cd07880          10 IWEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSL   89 (343)
T ss_pred             hhccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCccc
Confidence            33456789999999999999999986531                  124577899999999999999999988653321


Q ss_pred             -CcceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          718 -NMEFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       718 -~~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                       .....++||||+ +++|.+++...       +.++.|++.|++|||+.   +|+||||||+||++++++.+|++|||++
T Consensus        90 ~~~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---gi~H~dlkp~Nill~~~~~~kl~dfg~~  165 (343)
T cd07880          90 DRFHDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA  165 (343)
T ss_pred             cccceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccc
Confidence             123469999999 67888877532       23467999999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      +.....         .....+++.|+|||++.+ ..++.++||||+|++++++....
T Consensus       166 ~~~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~  213 (343)
T cd07880         166 RQTDSE---------MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK  213 (343)
T ss_pred             cccccC---------ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            854211         123467899999999876 45899999999998877765443

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.93  E-value=3.3e-26  Score=248.38  Aligned_cols=167  Identities=26%  Similarity=0.395  Sum_probs=133.6

Q ss_pred             CCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|+||+||+|....                 ......+|+..+++++ |||++++++++...     ...++
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~-----~~~~l   75 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFREN-----DELYF   75 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcC-----CcEEE
Confidence            5667899999999999998642                 1123457999999999 99999999998653     34899


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||+ +|+|.+++....          ..+.|++.||+|||+.   +++|+||||+||++++++.+||+|||.++....
T Consensus        76 v~e~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~  151 (283)
T cd07830          76 VFEYM-EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKH---GFFHRDLKPENLLVSGPEVVKIADFGLAREIRS  151 (283)
T ss_pred             EEecC-CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCCEEEeecccceeccC
Confidence            99999 889988876432          2356899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      .       .......|+..|+|||++.+ ..++.++||||+|++++++....
T Consensus       152 ~-------~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~  196 (283)
T cd07830         152 R-------PPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLR  196 (283)
T ss_pred             C-------CCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCC
Confidence            1       11123467889999998754 45799999999998887765544

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.93  E-value=2.1e-26  Score=249.41  Aligned_cols=230  Identities=26%  Similarity=0.334  Sum_probs=164.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|...+.||+|+||.||++....                   ..+.+.+|++++++++ ||||+++++++...     .
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~-----~   75 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDE-----E   75 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCC-----c
Confidence            468888999999999999987641                   1245778999999998 99999999988543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++++|.+++....        .++.|++.||+|||+.   +++|+||||+||+++.++.++++|||++...
T Consensus        76 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~  152 (280)
T cd05581          76 NLYFVLEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSK---GIIHRDLKPENILLDKDMHIKITDFGTAKVL  152 (280)
T ss_pred             eEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHeEECCCCCEEecCCcccccc
Confidence            4899999999999999987542        2367899999999998   9999999999999999999999999999866


Q ss_pred             ccccCCCC--------------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc
Q 002376          793 LERVDNQS--------------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV  858 (929)
Q Consensus       793 ~~~~~~~~--------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~  858 (929)
                      ........              .........|+..|+|||+..+..++.++|||++|++++++.....++.....  .+ 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~-  229 (280)
T cd05581         153 DPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSNE--YL-  229 (280)
T ss_pred             CCccccccCCCCCccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCccH--HH-
Confidence            43221100              01122345688999999999888899999999999776665433332222111  00 


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCH----HHHHH
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI----REALR  908 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~----~ev~~  908 (929)
                         .............    ....+.+.+++.+|++.+|++||++    +|+++
T Consensus       230 ---~~~~~~~~~~~~~----~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~  276 (280)
T cd05581         230 ---TFQKILKLEYSFP----PNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKA  276 (280)
T ss_pred             ---HHHHHHhcCCCCC----CccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhc
Confidence               0111100011111    1112223337779999999999999    66653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.93  E-value=8.8e-26  Score=240.06  Aligned_cols=225  Identities=25%  Similarity=0.313  Sum_probs=164.6

Q ss_pred             CCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      +|+..+.||+|++|.||++....                ..+.+.+|++.+++++||+++++++++...     ...++|
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~l~   75 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKK-----DELWIV   75 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----CeEEEE
Confidence            46778999999999999987641                245788999999999999999999998543     348999


Q ss_pred             EEecCCCCcccccccc-c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGE-R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~-~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      +||+++++|.+++... +        .++.+++.|++|||+.   +++||||+|+||++++++.+||+|||.+.......
T Consensus        76 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~  152 (253)
T cd05122          76 MEFCSGGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSN---GIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTK  152 (253)
T ss_pred             EecCCCCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcC---CEecCCCCHHHEEEccCCeEEEeeccccccccccc
Confidence            9999999999988654 1        2357899999999997   99999999999999999999999999988654221


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                      .       .....|+..|+|||++.+..++.++|||++|++++++.....++.....  .+............ ....  
T Consensus       153 ~-------~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~--~~~~~~~~~~~~~~-~~~~--  220 (253)
T cd05122         153 A-------RNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPP--MKALFKIATNGPPG-LRNP--  220 (253)
T ss_pred             c-------ccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCch--HHHHHHHHhcCCCC-cCcc--
Confidence            1       2345688999999999988899999999999877765444333222211  00000000000000 0000  


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        .....-+.+++.+||+.||++|||+.|+++
T Consensus       221 --~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~  250 (253)
T cd05122         221 --EKWSDEFKDFLKKCLQKNPEKRPTAEQLLK  250 (253)
T ss_pred             --cccCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence              000122333777999999999999999875

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.93  E-value=1.7e-26  Score=245.10  Aligned_cols=218  Identities=23%  Similarity=0.275  Sum_probs=157.7

Q ss_pred             ceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          666 ENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .+++|+|-||+||-|+++                  +...+..+|+++|+.++||.||.+...|.+     .+.+++|||
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET-----~ervFVVME  643 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFET-----PERVFVVME  643 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecC-----CceEEEEeh
Confidence            478999999999988776                  234678899999999999999999988854     445999999


Q ss_pred             ecCCCCccccc-ccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEEecccccccccc
Q 002376          728 FLSNGSLGDWI-HGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLE  794 (929)
Q Consensus       728 ~~~~gsL~~~l-~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki~DfGla~~~~~  794 (929)
                      -+ +|+..+++ ...         +....||+.||.|||..   +|+|+|+||+|||+.+.   -.+|+||||+||.+.+
T Consensus       644 Kl-~GDMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~k---nIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgE  719 (888)
T KOG4236|consen  644 KL-HGDMLEMILSSEKGRLPERITKFLVTQILVALRYLHFK---NIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGE  719 (888)
T ss_pred             hh-cchHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhc---ceeeccCCchheeeccCCCCCceeeccccceeecch
Confidence            99 45655544 211         12257999999999998   99999999999999643   3799999999998864


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      .       .....++||+.|.|||+++.+.|...-|+||.|++.|--.     .+.+|....+-+...+....   ....
T Consensus       720 k-------sFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsL-----SGTFPFNEdEdIndQIQNAa---FMyP  784 (888)
T KOG4236|consen  720 K-------SFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSL-----SGTFPFNEDEDINDQIQNAA---FMYP  784 (888)
T ss_pred             h-------hhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEe-----cccccCCCccchhHHhhccc---cccC
Confidence            3       2345579999999999999999999999999998776533     34444422222222222111   1111


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      +..|..+....-+++...++..-.+|-+.+..+
T Consensus       785 p~PW~eis~~AidlIn~LLqVkm~kRysvdk~l  817 (888)
T KOG4236|consen  785 PNPWSEISPEAIDLINNLLQVKMRKRYSVDKSL  817 (888)
T ss_pred             CCchhhcCHHHHHHHHHHHHHHHHHhcchHhhc
Confidence            222223332222377788888888888877654

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.93  E-value=1e-26  Score=256.19  Aligned_cols=221  Identities=25%  Similarity=0.261  Sum_probs=171.4

Q ss_pred             hCCCCCceeecccCceeEEeccccCcHH------------HHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGSWK------------SFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~~------------~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++.|.....+|.|+|+.|-++....+.+            +-.+|+.++... +||||+++.++|.+     ..+.|+||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~~~~~~e~~~~~~~~~h~niv~~~~v~~~-----~~~~~~v~  395 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRADDNQDEIPISLLVRDHPNIVKSHDVYED-----GKEIYLVM  395 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccccccccccchhhhhcCCCcceeecceecC-----Cceeeeee
Confidence            5567777889999999998877663322            233577665555 79999999999943     44589999


Q ss_pred             EecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee-cCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL-DEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl-~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      |++.+|-+.+.+...+       .++.+++.|+.|||++   +|||||+||+|||+ ++.+.++|+|||.++.....   
T Consensus       396 e~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~---gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~---  469 (612)
T KOG0603|consen  396 ELLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQ---GVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS---  469 (612)
T ss_pred             hhccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhc---CeeecCCChhheeecCCCCcEEEEEechhhhCchh---
Confidence            9999998877665322       3567889999999998   99999999999999 58999999999999976432   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                            ....+-|..|.|||++....|++++|+||+|+++|+|..+.-++...|..      ..+...+.     .....
T Consensus       470 ------~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~------~ei~~~i~-----~~~~s  532 (612)
T KOG0603|consen  470 ------CDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG------IEIHTRIQ-----MPKFS  532 (612)
T ss_pred             ------hcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch------HHHHHhhc-----CCccc
Confidence                  22335688999999999999999999999999988888777777766653      12222111     11122


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ++++...++|+..|++.||.+||+|.++..
T Consensus       533 ~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~~  562 (612)
T KOG0603|consen  533 ECVSDEAKDLLQQLLQVDPALRLGADEIGA  562 (612)
T ss_pred             cccCHHHHHHHHHhccCChhhCcChhhhcc
Confidence            566677777888999999999999999863

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.93  E-value=6.3e-26  Score=242.12  Aligned_cols=222  Identities=22%  Similarity=0.273  Sum_probs=163.4

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|+||.||+++...                  ...++.+|++++++++||||+++++++...     ...+
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDG-----NKLC   75 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccC-----CEEE
Confidence            47778999999999999986541                  134677899999999999999999998643     4589


Q ss_pred             EEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +||||+++++|.+++....            .++.+++.|++|||+.   +++||||||+||++++++.+|++|||+++.
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~  152 (256)
T cd08530          76 IVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHRDLKSANILLVANDLVKIGDLGISKV  152 (256)
T ss_pred             EEehhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCcceEEEecCCcEEEeeccchhh
Confidence            9999999999999886411            2356899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....        ......|++.|+|||.+.+..++.++||||+|++++++.....++.....  .     .+........
T Consensus       153 ~~~~--------~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~-----~~~~~~~~~~  217 (256)
T cd08530         153 LKKN--------MAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPPFEARSM--Q-----DLRYKVQRGK  217 (256)
T ss_pred             hccC--------CcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--H-----HHHHHHhcCC
Confidence            6432        11123578899999999999999999999999877775443333221111  0     1111000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .  ..........+.+++.+|++.+|++||++.|+++
T Consensus       218 ~--~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~  252 (256)
T cd08530         218 Y--PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILA  252 (256)
T ss_pred             C--CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0  0011112223344778999999999999999875

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.92  E-value=1.9e-26  Score=257.49  Aligned_cols=181  Identities=23%  Similarity=0.350  Sum_probs=143.5

Q ss_pred             ChHHHHHhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       652 ~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      ...++..++++|...+.||+|+||.||++....                  ..+.+.+|+.++++++||||+++++++..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            446677788999999999999999999986431                  13457789999999999999999998754


Q ss_pred             CCC-CCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEec
Q 002376          714 LDS-KNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       714 ~~~-~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                      ... ......++|+|++ +++|.++++..+       .++.|+++|++|||+.   +|+||||||+||++++++.+||+|
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIll~~~~~~kl~d  163 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILD  163 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChHHEEEcCCCCEEEec
Confidence            321 1223468888887 788987765322       3467899999999998   999999999999999999999999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhH
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                      ||+++....         ......|+..|+|||++.+ ..++.++||||+|++++++..+.
T Consensus       164 fg~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~  215 (345)
T cd07877         164 FGLARHTDD---------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  215 (345)
T ss_pred             ccccccccc---------cccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCC
Confidence            999875421         1123468899999999876 46899999999998887765443

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.2e-25  Score=239.47  Aligned_cols=224  Identities=26%  Similarity=0.356  Sum_probs=164.2

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      +|+..+.||+|++|.||++....                  ..+.+.+|++++++++|||++++++++...     ...+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~-----~~~~   75 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETS-----DSLY   75 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeC-----CEEE
Confidence            46778999999999999986531                  235688999999999999999999998542     4589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++++|.+++....        .++.+++.|++|||+.   +|+||||||+||+++.++.+||+|||.++.....
T Consensus        76 ~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~  152 (254)
T cd06627          76 IILEYAENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQ---GVIHRDIKAANILTTKDGVVKLADFGVATKLNDV  152 (254)
T ss_pred             EEEecCCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhC---CcccCCCCHHHEEECCCCCEEEeccccceecCCC
Confidence            9999999999999886432        2367899999999998   9999999999999999999999999999866432


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      ..      ......|+..|+|||+..+..++.++|||++|++++++.....++..... ...     ........   ..
T Consensus       153 ~~------~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~~~~~~-~~~-----~~~~~~~~---~~  217 (254)
T cd06627         153 SK------DDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPYYDLNP-MAA-----LFRIVQDD---HP  217 (254)
T ss_pred             cc------cccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCCCCccH-HHH-----HHHHhccC---CC
Confidence            11      12234688999999999888899999999999877765443322221111 000     01100000   00


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..+..+...+.+++.+|++.+|++||++.|++.
T Consensus       218 ~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~  250 (254)
T cd06627         218 PLPEGISPELKDFLMQCFQKDPNLRPTAKQLLK  250 (254)
T ss_pred             CCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhc
Confidence            111112223334777999999999999999874

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.5e-27  Score=244.83  Aligned_cols=433  Identities=23%  Similarity=0.237  Sum_probs=241.4

Q ss_pred             EcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccc-ccc
Q 002376           77 NLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA-NKI  155 (929)
Q Consensus        77 ~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l  155 (929)
                      |-++.+|+ .||..+-  ..-+.++|..|+|+...|.+|+.+++||.||||+|+|+.+-|..|.++.+|.+|-+-+ |+|
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            33444455 5555443  3458899999999988888999999999999999999999999999999987766555 999


Q ss_pred             CCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       156 ~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      + .+|.+.|++|.+|+.|.+.-|++.-        +....|..|++|..|.|..|.+..+--.+|..+.+++++.+..|.
T Consensus       129 ~-~l~k~~F~gL~slqrLllNan~i~C--------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  129 T-DLPKGAFGGLSSLQRLLLNANHINC--------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             h-hhhhhHhhhHHHHHHHhcChhhhcc--------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence            8 8999999999999999999888733        344577888999999999999996666699999999999999887


Q ss_pred             CCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCC-CccceeccccccccCCCC
Q 002376          236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNL-PFLRTYNIGFNKIVSSGD  314 (929)
Q Consensus       236 l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~i~~~~~  314 (929)
                      +--.     . .++.+....       ...|.+++...-..-..+.++++..+-+..|..- ..+..=..+........ 
T Consensus       200 ~icd-----C-nL~wla~~~-------a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~c-  265 (498)
T KOG4237|consen  200 FICD-----C-NLPWLADDL-------AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSIC-  265 (498)
T ss_pred             cccc-----c-ccchhhhHH-------hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcC-
Confidence            4310     0 011111100       0122223333333333333333332222222111 00000000000000000 


Q ss_pred             CCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccC
Q 002376          315 DEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIP  394 (929)
Q Consensus       315 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  394 (929)
                           ....|..+++|+.|+|++|++++.-+.+|.... .+++|+|..|+|...-...|.++..|+.|+|.+|+|+..-|
T Consensus       266 -----P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~  339 (498)
T KOG4237|consen  266 -----PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP  339 (498)
T ss_pred             -----hHHHHhhcccceEeccCCCccchhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec
Confidence                 012344455555555555555544444444444 45555555555554444455555555555555555555555


Q ss_pred             ccccCCCCCCEEEecCCcCCCCCcccccCCCCCcee--cccCcccccccCcccccccccceecccCCcCCCCCCCCcccC
Q 002376          395 IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQI--DLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP  472 (929)
Q Consensus       395 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L--~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~  472 (929)
                      ..|..+.+|.+|+|-.|.+--       ++ .|.+|  .|..+.-.|..|-  +.-..++.++++.+.+...--.     
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~C-------nC-~l~wl~~Wlr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~-----  404 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFNC-------NC-RLAWLGEWLRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCG-----  404 (498)
T ss_pred             ccccccceeeeeehccCcccC-------cc-chHHHHHHHhhCCCCCCCCC--CCCchhccccchhccccccccC-----
Confidence            555555555555555544320       00 00000  0111111111111  1111233444444433211000     


Q ss_pred             Cchhhh---------cccCcc-EEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCC
Q 002376          473 LPEEIS---------RLENVV-TIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       473 ~p~~~~---------~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  542 (929)
                      .|++.+         ..+-+. +..-|++.+. .+|..+-  ..-.+|++.+|.++ .+|..  .+.+| .+|+|+|+++
T Consensus       405 ~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  405 GPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             CccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence            011111         011111 1223333333 4443321  23467888888888 55655  56777 8899999888


Q ss_pred             CcCCcccccCCCCCeEeCCCC
Q 002376          543 GSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       543 ~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      -.--..|.++++|.+|-||+|
T Consensus       478 ~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  478 SLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhhcccccchhhhheeEEecC
Confidence            666678888999999988886

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.92  E-value=6e-26  Score=248.12  Aligned_cols=228  Identities=22%  Similarity=0.254  Sum_probs=157.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|++..                 ..+++.+|+.++.+.. ||||++++++|.+.     ..
T Consensus        14 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~-----~~   88 (296)
T cd06618          14 LNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITD-----SD   88 (296)
T ss_pred             cchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecC-----Ce
Confidence            3567888999999999999988751                 1234667887777775 99999999998643     34


Q ss_pred             EEEEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .|+||||++ +++.++...         ...++.+++.|++|||+.  .+|+||||||+||++++++.+||+|||+++.+
T Consensus        89 ~~~v~e~~~-~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~  165 (296)
T cd06618          89 VFICMELMS-TCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEK--HGVIHRDVKPSNILLDASGNVKLCDFGISGRL  165 (296)
T ss_pred             EEEEeeccC-cCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhh--CCEecCCCcHHHEEEcCCCCEEECccccchhc
Confidence            899999985 466555432         123577899999999973  28999999999999999999999999998765


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC----CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER----PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ....       ......|+..|+|||++.+..    ++.++||||+|++++++.....++...... .+.    +.....
T Consensus       166 ~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~----~~~~~~  233 (296)
T cd06618         166 VDSK-------AKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKNCKTE-FEV----LTKILQ  233 (296)
T ss_pred             cCCC-------cccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCcchhH-HHH----HHHHhc
Confidence            3211       112235788999999987654    889999999998777765443333211110 000    111111


Q ss_pred             ccchhhhhhh-HHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          869 SNESQTIQLH-DCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       869 ~~~~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ... ...... .+..++. +++.+||+.||++||++.++++.
T Consensus       234 ~~~-~~~~~~~~~~~~l~-~li~~~l~~~p~~Rp~~~~il~~  273 (296)
T cd06618         234 EEP-PSLPPNEGFSPDFC-SFVDLCLTKDHRKRPKYRELLQH  273 (296)
T ss_pred             CCC-CCCCCCCCCCHHHH-HHHHHHccCChhhCCCHHHHhcC
Confidence            100 000000 0112233 37779999999999999999754

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.92  E-value=3.4e-26  Score=245.36  Aligned_cols=227  Identities=23%  Similarity=0.292  Sum_probs=159.4

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||.||+++...                   ..+.+.+|++++++++||||+++++.+..     ....|+||||+
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-----~~~~~lv~e~~   75 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQG-----KKNLYLVMEYL   75 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheec-----CcEEEEEEecC
Confidence            6899999999988651                   13467889999999999999999988743     33589999999


Q ss_pred             CCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCC--
Q 002376          730 SNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ--  799 (929)
Q Consensus       730 ~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~--  799 (929)
                      ++++|.++++...        .++.|++.||+|||+.   +++||||+|+||++++++.+||+|||++..........  
T Consensus        76 ~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~  152 (265)
T cd05579          76 PGGDLASLLENVGSLDEDVARIYIAEIVLALEYLHSN---GIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN  152 (265)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHc---CeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccc
Confidence            9999999886432        2367899999999998   99999999999999999999999999987543211100  


Q ss_pred             CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH
Q 002376          800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD  879 (929)
Q Consensus       800 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  879 (929)
                      ..........++..|+|||+..+..++.++||||+|++++++.....++.....  .+..+. ...   ..... +....
T Consensus       153 ~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~~--~~~~~~-~~~---~~~~~-~~~~~  225 (265)
T cd05579         153 DDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEFLVGIPPFHGETP--EEIFQN-ILN---GKIEW-PEDVE  225 (265)
T ss_pred             cccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCH--HHHHHH-Hhc---CCcCC-Ccccc
Confidence            001122334688899999999888899999999999887776544333322111  111111 110   00000 00000


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                       ....+.+++.+||+.+|++|||+.++.+.|+
T Consensus       226 -~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~  256 (265)
T cd05579         226 -VSDEAIDLISKLLVPDPEKRLGAKSIEEIKN  256 (265)
T ss_pred             -CCHHHHHHHHHHhcCCHhhcCCCccHHHHhc
Confidence             1222233777999999999999966655554

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.92  E-value=2.2e-26  Score=256.83  Aligned_cols=176  Identities=24%  Similarity=0.355  Sum_probs=140.1

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KN  718 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~  718 (929)
                      ...++|+..+.||+|+||.||+|+...                  ..+.+.+|+.++++++|||++++++++...+. ..
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            346789999999999999999987641                  12456689999999999999999998765432 22


Q ss_pred             cceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ....++|+||+ +++|.+++...+       .++.|++.|++|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~dlkp~Nill~~~~~~kL~dfg~~~~  167 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSA---GIIHRDLKPSNIAVNEDCELKILDFGLARH  167 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEECCCCCEEEcccccccc
Confidence            23479999999 679988875422       3467899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ....         .....++..|+|||++.+. .++.++||||+|++++++..+..
T Consensus       168 ~~~~---------~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~  214 (343)
T cd07851         168 TDDE---------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKT  214 (343)
T ss_pred             cccc---------ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCC
Confidence            5211         2234678899999998653 67899999999988887655443

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-26  Score=235.74  Aligned_cols=173  Identities=27%  Similarity=0.315  Sum_probs=142.2

Q ss_pred             CCCCceeecccCceeEEeccccCcHHHH-------------------HHHHHHHHcc-CCccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNV-RHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~~~~~-------------------~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +|....+||+|+||+|..+..+++.+-+                   +.|-++|+-- +-|.+|+++.++.     ....
T Consensus       350 DFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQ-----TmDR  424 (683)
T KOG0696|consen  350 DFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQ-----TMDR  424 (683)
T ss_pred             ccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhh-----hhhh
Confidence            7888999999999999999888654432                   2466666665 4678999998884     4555


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+||||+.||+|.-++++..        .++.+||-||-|||++   +||.||+|..|||+|.+|.+||+|||+++.- 
T Consensus       425 LyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~k---gIiYRDLKLDNvmLd~eGHiKi~DFGmcKEn-  500 (683)
T KOG0696|consen  425 LYFVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN-  500 (683)
T ss_pred             eeeEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcC---CeeeeeccccceEeccCCceEeeeccccccc-
Confidence            999999999999998887433        3477899999999998   9999999999999999999999999999832 


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                           ......+..++||+-|+|||++...+|+.++|-|++|+.+||+..+.-++
T Consensus       501 -----i~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpPF  550 (683)
T KOG0696|consen  501 -----IFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPF  550 (683)
T ss_pred             -----ccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCCC
Confidence                 22233456789999999999999999999999999998877765544443

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.92  E-value=3.2e-25  Score=244.22  Aligned_cols=219  Identities=26%  Similarity=0.324  Sum_probs=154.6

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      |...+.||+|+||+||+|+...                   ..+.+.+|+++++.++|||++++++++.+.     ...|
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   97 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKE-----HTAW   97 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC-----CEEE
Confidence            4556789999999999987531                   124678899999999999999999998653     3479


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+. |++.+++....         .++.|++.|++|||+.   +++||||||+||++++++.+||+|||++.... 
T Consensus        98 lv~e~~~-~~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~-  172 (313)
T cd06633          98 LVMEYCL-GSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSH---NMIHRDIKAGNILLTEPGQVKLADFGSASKSS-  172 (313)
T ss_pred             EEEecCC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChhhEEECCCCCEEEeecCCCcccC-
Confidence            9999995 57777664321         2356899999999998   99999999999999999999999999986421 


Q ss_pred             ccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                               ......|+..|+|||++.   ...++.++||||+|++++++.....++..... ...     +........
T Consensus       173 ---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~~~~~~-~~~-----~~~~~~~~~  237 (313)
T cd06633         173 ---------PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA-MSA-----LYHIAQNDS  237 (313)
T ss_pred             ---------CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCh-HHH-----HHHHHhcCC
Confidence                     112346899999999974   45689999999999877765433222111110 000     000000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      . ... .......+++++.+||+.+|++||++.|++.
T Consensus       238 ~-~~~-~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~  272 (313)
T cd06633         238 P-TLQ-SNEWTDSFRGFVDYCLQKIPQERPASAELLR  272 (313)
T ss_pred             C-CCC-ccccCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            0 000 0011122334777999999999999999985

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=1e-26  Score=246.40  Aligned_cols=225  Identities=20%  Similarity=0.274  Sum_probs=169.9

Q ss_pred             cCCCCChHHHHHhhCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccce
Q 002376          647 CHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKL  707 (929)
Q Consensus       647 ~~~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l  707 (929)
                      ....+.++++++       ...+|-|+||.|-..+..                   ++.+....|-.+|...+.|.||++
T Consensus       413 e~a~v~l~dl~~-------iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrL  485 (732)
T KOG0614|consen  413 EFAQVKLSDLKR-------IATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRL  485 (732)
T ss_pred             hhcccchhhhhh-------hhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHH
Confidence            334455555544       467999999999655443                   234456689999999999999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM  779 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~  779 (929)
                      |..|     ++.+++|+.||-|-||.+...++++.        .++..|.+|++|||+.   +||.||+||+|.++|.+|
T Consensus       486 YrTf-----rd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k---~iIYRDLKPENllLd~~G  557 (732)
T KOG0614|consen  486 YRTF-----RDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRK---GIIYRDLKPENLLLDNRG  557 (732)
T ss_pred             HHHh-----ccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhc---CceeccCChhheeeccCC
Confidence            9998     45567999999999999999998554        3456788999999998   999999999999999999


Q ss_pred             ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhc
Q 002376          780 TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQV  858 (929)
Q Consensus       780 ~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~  858 (929)
                      .+|+.|||+|+.+..       ...+..++||+.|.|||++..+..+.++|.|++|+++||+.++.-+++.... .....
T Consensus       558 y~KLVDFGFAKki~~-------g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs~~dpmktYn~  630 (732)
T KOG0614|consen  558 YLKLVDFGFAKKIGS-------GRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFSGVDPMKTYNL  630 (732)
T ss_pred             ceEEeehhhHHHhcc-------CCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCCCCchHHHHHH
Confidence            999999999998742       2345678999999999999999999999999999888887666655554433 22222


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG  902 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs  902 (929)
                      +-..+..+         ..+..+.+-..+++.+.+..+|.+|--
T Consensus       631 ILkGid~i---------~~Pr~I~k~a~~Lik~LCr~~P~ERLG  665 (732)
T KOG0614|consen  631 ILKGIDKI---------EFPRRITKTATDLIKKLCRDNPTERLG  665 (732)
T ss_pred             HHhhhhhh---------hcccccchhHHHHHHHHHhcCcHhhhc
Confidence            22222111         111122222333777888999999975

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-25  Score=231.44  Aligned_cols=175  Identities=26%  Similarity=0.338  Sum_probs=140.4

Q ss_pred             hCCCCCceeecccCceeEEeccccCc---------------HHHHHHHHHHHHccC--Ccc----ccceeeecccCCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS---------------WKSFIAECETLRNVR--HRN----LVKLITSCSSLDSKN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~~~E~~~l~~l~--Hpn----iv~l~~~~~~~~~~~  718 (929)
                      +++|.....+|+|+||+|.++++...               .++.+-|+++++++.  -|+    +|++.+++     .-
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wF-----dy  162 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWF-----DY  162 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhh-----hc
Confidence            67899999999999999998877632               334556999999993  233    77887777     44


Q ss_pred             cceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-----------
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----------  777 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-----------  777 (929)
                      .++.|+|+|.+ |-|++++++..          +.++.|++++++|||+.   +++|-|+||+|||+.+           
T Consensus       163 rghiCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~---kl~HTDLKPENILfvss~~~~~~~~k~  238 (415)
T KOG0671|consen  163 RGHICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDL---KLTHTDLKPENILFVSSEYFKTYNPKK  238 (415)
T ss_pred             cCceEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhc---ceeecCCChheEEEeccceEEEeccCC
Confidence            55689999998 56999999753          34467999999999998   9999999999999832           


Q ss_pred             ---------CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          778 ---------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       778 ---------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                               +..+||.|||-|+.-.+.         ...++.|..|+|||++.+-.++.++||||+||++.|+.++...+
T Consensus       239 ~~~~~r~~ks~~I~vIDFGsAtf~~e~---------hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LF  309 (415)
T KOG0671|consen  239 KVCFIRPLKSTAIKVIDFGSATFDHEH---------HSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLF  309 (415)
T ss_pred             ccceeccCCCcceEEEecCCcceeccC---------cceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceec
Confidence                     235899999999864221         24467899999999999999999999999999999987777666


Q ss_pred             hcCC
Q 002376          849 SNLP  852 (929)
Q Consensus       849 ~~~~  852 (929)
                      ...+
T Consensus       310 qtHe  313 (415)
T KOG0671|consen  310 QTHE  313 (415)
T ss_pred             ccCC
Confidence            5544

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.92  E-value=8.2e-26  Score=245.05  Aligned_cols=167  Identities=26%  Similarity=0.391  Sum_probs=135.3

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      |+..+.||+|+||.||+|+...                  ..+.+.+|+.++++++|||++++++++.+.     ...++
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-----~~~~~   75 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTE-----RKLYL   75 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcC-----CceEE
Confidence            4566789999999999987652                  124677899999999999999999998643     34899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||++ ++|.+++...         ..++.+++.|++|||+.   +|+||||+|+||++++++.+||+|||.++.....
T Consensus        76 v~e~~~-~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~  151 (282)
T cd07829          76 VFEYCD-MDLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSH---RILHRDLKPQNILINRDGVLKLADFGLARAFGIP  151 (282)
T ss_pred             EecCcC-cCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChheEEEcCCCCEEEecCCcccccCCC
Confidence            999997 5899988654         12367899999999998   9999999999999999999999999999865321


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ..      ......++..|+|||++.+. .++.++|||++|++++++...
T Consensus       152 ~~------~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~  195 (282)
T cd07829         152 LR------TYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITG  195 (282)
T ss_pred             cc------ccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhC
Confidence            11      11223567889999998777 789999999999888776544

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.92  E-value=6.1e-26  Score=252.67  Aligned_cols=178  Identities=22%  Similarity=0.293  Sum_probs=135.2

Q ss_pred             CCCCC-ceeecccCceeEEeccccCc------------------------------HHHHHHHHHHHHccCCccccceee
Q 002376          661 GNFSH-ENLIGSGSFGSVLHNERTGS------------------------------WKSFIAECETLRNVRHRNLVKLIT  709 (929)
Q Consensus       661 ~~~~~-~~~iG~G~~g~Vy~~~~~~~------------------------------~~~~~~E~~~l~~l~Hpniv~l~~  709 (929)
                      ++|.. .+.||+|+||+||+|.....                              ...+.+|++++++++||||+++++
T Consensus         8 ~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~   87 (335)
T PTZ00024          8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVD   87 (335)
T ss_pred             cchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeE
Confidence            34543 46799999999999975410                              014678999999999999999999


Q ss_pred             ecccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCce
Q 002376          710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA  781 (929)
Q Consensus       710 ~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~  781 (929)
                      ++...     ...++||||++ |+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+
T Consensus        88 ~~~~~-----~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~dl~~~nill~~~~~~  158 (335)
T PTZ00024         88 VYVEG-----DFINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKW---YFMHRDLSPANIFINSKGIC  158 (335)
T ss_pred             EEecC-----CcEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHeEECCCCCE
Confidence            98543     35899999996 68988875322        2367899999999997   99999999999999999999


Q ss_pred             EEeccccccccccccCCC--------CCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHh
Q 002376          782 KVGDFGLARFLLERVDNQ--------SSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       782 ki~DfGla~~~~~~~~~~--------~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      |++|||+++.........        ..........+++.|+|||++.+.. ++.++||||+|++++++.....+
T Consensus       159 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p  233 (335)
T PTZ00024        159 KIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPL  233 (335)
T ss_pred             EECCccceeecccccccccccccccccccccccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            999999998653110000        0011112335788999999987654 79999999999888876554433

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.92  E-value=9.2e-26  Score=271.27  Aligned_cols=122  Identities=32%  Similarity=0.465  Sum_probs=105.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|...++||+|+||.||+|++..                   ..+.+.+|+.+++.++||||+++++++..     ...
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~~~   78 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQS-----ANN   78 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEE-----CCE
Confidence            578889999999999999987651                   12567889999999999999999988743     345


Q ss_pred             EEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      .|+||||+++|+|.++++..        +.++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+++
T Consensus        79 ~~lVmEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~---gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610          79 VYLVMEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRH---GIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             EEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            89999999999999988632        23467899999999998   99999999999999999999999999986

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.92  E-value=9.7e-26  Score=226.53  Aligned_cols=244  Identities=21%  Similarity=0.207  Sum_probs=168.4

Q ss_pred             ChHHHHHhhCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccC-CccccceeeecccC
Q 002376          652 SYDELRRATGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSL  714 (929)
Q Consensus       652 ~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~  714 (929)
                      +++|+-+-|+     +.+|+|+|+.|-.+...                -.+.+..+|++++.+.+ |+||++++++|.+ 
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd-  147 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFED-  147 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc-
Confidence            4677777663     78999999999654432                13567889999999995 9999999999954 


Q ss_pred             CCCCcceEEEEEEecCCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC---ceEE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---TAKV  783 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~---~~ki  783 (929)
                          ...+|+|||-|.||.|..++++++.        +..+||.||.|||..   +|.|||+||+|||..+..   -+||
T Consensus       148 ----d~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~k---gIAHRDlKPENiLC~~pn~vsPvKi  220 (463)
T KOG0607|consen  148 ----DTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTK---GIAHRDLKPENILCESPNKVSPVKI  220 (463)
T ss_pred             ----cceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhc---CcccccCCccceeecCCCCcCceee
Confidence                3348999999999999999976553        357899999999998   999999999999996543   4799


Q ss_pred             eccccccccccccCC-CCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc---h
Q 002376          784 GDFGLARFLLERVDN-QSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPE---N  854 (929)
Q Consensus       784 ~DfGla~~~~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~  854 (929)
                      +||-++.-+....+- ..........+|+..|||||+..     ...|+.++|.||+|+++|-|.-+..++...-.   .
T Consensus       221 CDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCG  300 (463)
T KOG0607|consen  221 CDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCG  300 (463)
T ss_pred             eccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCC
Confidence            999887654322111 11112234568999999999753     23589999999999887765444443322211   1


Q ss_pred             hh-----hccChHHHHhhcc-cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 VL-----QVLDPELRQLMTS-NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 ~~-----~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.     .+-...+.+.+.+ ..+.+...|.-++...++++...+..|+.+|-++.+++.
T Consensus       301 WdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vln  360 (463)
T KOG0607|consen  301 WDRGEVCRVCQNKLFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLN  360 (463)
T ss_pred             ccCCCccHHHHHHHHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccC
Confidence            11     1111112211111 111222233445666666788888899999999988876

>PLN03210 Resistant to P

Probab=99.92  E-value=1.4e-23  Score=266.63  Aligned_cols=344  Identities=22%  Similarity=0.318  Sum_probs=228.1

Q ss_pred             CCCCCCCCCCEEEeecCC------CCCCCCcCCCCCC-CCcEEeCCCCCCCCCcccccccccccceecccccccCCCCCh
Q 002376           89 PHIGNLSFLRSIQLQNNK------LSGNLPREIGNLF-RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTD  161 (929)
Q Consensus        89 ~~l~~L~~L~~L~Ls~N~------l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~  161 (929)
                      ..|..+++|+.|.+..+.      +...+|..|..++ +|+.|++.+|.+. .+|..| ...+|++|+|++|++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            458889999999997764      3446788887764 6999999999987 678777 5789999999999997 6766


Q ss_pred             hhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCC
Q 002376          162 DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP  241 (929)
Q Consensus       162 ~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip  241 (929)
                      . +..+++|+.|+|++|...+.+|         .++.+++|+.|+|++|..-..+|..+.++++|++|++++|..-+.+|
T Consensus       629 ~-~~~l~~Lk~L~Ls~~~~l~~ip---------~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        629 G-VHSLTGLRNIDLRGSKNLKEIP---------DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             c-cccCCCCCEEECCCCCCcCcCC---------ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            6 7889999999999876544444         35678999999999988777889999999999999999976555788


Q ss_pred             cccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccc
Q 002376          242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFI  321 (929)
Q Consensus       242 ~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~  321 (929)
                      ..+  .+++|+.|++++|...+.+|..   ..+|+.|++++|.++ .+|..+ .+++|+.|++..+.......       
T Consensus       699 ~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~-------  764 (1153)
T PLN03210        699 TGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWE-------  764 (1153)
T ss_pred             CcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccc-------
Confidence            765  4788888888888766666643   357788888888876 455544 46667777665533211100       


Q ss_pred             cccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCC
Q 002376          322 TSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQ  401 (929)
Q Consensus       322 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  401 (929)
                                       .+. .++......+.+|+.|+|++|...+.+|.+++++++|+.|+|++|..-+.+|..+ .++
T Consensus       765 -----------------~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~  825 (1153)
T PLN03210        765 -----------------RVQ-PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE  825 (1153)
T ss_pred             -----------------ccc-ccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence                             000 0111111122246666666665555556666666666666666554333455444 456


Q ss_pred             CCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccC-CcCCCCCCCCcccCCchhhhcc
Q 002376          402 GLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSN-NRINGNIPKGILRPLPEEISRL  480 (929)
Q Consensus       402 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~i~~~~~~~~p~~~~~l  480 (929)
                      +|+.|++++|..-..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++ |+++ .+        |..+..+
T Consensus       826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l--------~~~~~~L  892 (1153)
T PLN03210        826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RV--------SLNISKL  892 (1153)
T ss_pred             ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-cc--------Ccccccc
Confidence            6666666665433333332   245666666666665 4566666666666666665 3333 12        3444556


Q ss_pred             cCccEEEecCC
Q 002376          481 ENVVTIDLSDN  491 (929)
Q Consensus       481 ~~L~~LdLs~N  491 (929)
                      +.|+.++++++
T Consensus       893 ~~L~~L~l~~C  903 (1153)
T PLN03210        893 KHLETVDFSDC  903 (1153)
T ss_pred             cCCCeeecCCC
Confidence            66666666665

syringae 6; Provisional

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.91  E-value=3.2e-25  Score=235.81  Aligned_cols=213  Identities=28%  Similarity=0.329  Sum_probs=155.0

Q ss_pred             ecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          669 IGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ||+|+||.||++....                   ..+.+..|+.++++++||||+++++++..     ....++||||+
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~~v~e~~   75 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQT-----EEKLYLVLEYA   75 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeec-----CCeeEEEEecC
Confidence            6999999999887541                   23368889999999999999999998843     34589999999


Q ss_pred             CCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          730 SNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       730 ~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      ++++|.+++....        ....|++.|+.|+|+.   +++|+||||+||++++++.++|+|||++.......     
T Consensus        76 ~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~-----  147 (250)
T cd05123          76 PGGELFSHLSKEGRFSEERARFYAAEIVLALEYLHSL---GIIYRDLKPENILLDADGHIKLTDFGLAKELSSEG-----  147 (250)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcceEEEcCCCcEEEeecCcceecccCC-----
Confidence            9999999886432        2256899999999997   99999999999999999999999999988653211     


Q ss_pred             ccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL  881 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  881 (929)
                       .......|+..|+|||...+...+.++|||++|++++++.....++.....  .+.    ..........    .+...
T Consensus       148 -~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~~~~~--~~~----~~~~~~~~~~----~~~~~  216 (250)
T cd05123         148 -SRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFYAEDR--KEI----YEKILKDPLR----FPEFL  216 (250)
T ss_pred             -CcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHH----HHHHhcCCCC----CCCCC
Confidence             112334688999999999888899999999999877665443333221111  000    1111111111    11111


Q ss_pred             HHHHHHHhccccCCCCCCCCCHHH
Q 002376          882 ITIIGSVGLSCTTESPGGRIGIRE  905 (929)
Q Consensus       882 ~~~~~~l~~~Cl~~dP~~RPs~~e  905 (929)
                      ...+.+++.+||..||++||++++
T Consensus       217 ~~~l~~~i~~~l~~~p~~R~~~~~  240 (250)
T cd05123         217 SPEARDLISGLLQKDPTKRLGSGG  240 (250)
T ss_pred             CHHHHHHHHHHhcCCHhhCCCccc
Confidence            222233777999999999999955

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.91  E-value=3.1e-25  Score=252.95  Aligned_cols=243  Identities=21%  Similarity=0.258  Sum_probs=153.4

Q ss_pred             HhhCCCCCceeecccCceeEEecccc--------------------------------CcHHHH--------------HH
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT--------------------------------GSWKSF--------------IA  691 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------------------------~~~~~~--------------~~  691 (929)
                      ...++|+..++||+|+||.||+|...                                +..++|              ..
T Consensus       142 ~~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~v  221 (507)
T PLN03224        142 WSSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMV  221 (507)
T ss_pred             ccccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHH
Confidence            35779999999999999999998531                                011223              34


Q ss_pred             HHHHHHccCCccc-----cceeeecccCCC---CCcceEEEEEEecCCCCccccccccc---------------------
Q 002376          692 ECETLRNVRHRNL-----VKLITSCSSLDS---KNMEFLALVYEFLSNGSLGDWIHGER---------------------  742 (929)
Q Consensus       692 E~~~l~~l~Hpni-----v~l~~~~~~~~~---~~~~~~~lV~e~~~~gsL~~~l~~~~---------------------  742 (929)
                      |+.++.+++|.++     ++++++|.....   ...+..++||||+++|+|.++++...                     
T Consensus       222 E~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~  301 (507)
T PLN03224        222 EAYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNM  301 (507)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhc
Confidence            6667777766554     678888764321   12345799999999999998886311                     


Q ss_pred             -----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccc
Q 002376          743 -----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS  811 (929)
Q Consensus       743 -----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt  811 (929)
                                 .++.|++.||+|+|+.   +|+||||||+||+++.++.+||+|||+++.+....     ........+|
T Consensus       302 ~~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~-----~~~~~~g~~t  373 (507)
T PLN03224        302 PQDKRDINVIKGVMRQVLTGLRKLHRI---GIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGI-----NFNPLYGMLD  373 (507)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCchHhEEECCCCcEEEEeCcCccccccCC-----ccCccccCCC
Confidence                       1245789999999998   89999999999999999999999999997653211     0111123458


Q ss_pred             cccccccccCCCCC----------------------CCCCCCCCCcCCCCCcchhHH-hhhcCCc--hhhhccChHHHHh
Q 002376          812 IGYVPPEYGLGERP----------------------STAGDVPTSESFAGEFNIVKW-VESNLPE--NVLQVLDPELRQL  866 (929)
Q Consensus       812 ~~y~aPE~~~~~~~----------------------~~~~DV~s~g~~~~~~~~~~~-~~~~~~~--~~~~~~~~~l~~~  866 (929)
                      +.|+|||.+.....                      ..+.||||+|++++++..... ++.....  ...+..+..+..+
T Consensus       374 p~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~~~~f~~~~~~~~~~~~~~  453 (507)
T PLN03224        374 PRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVANIRLFNTELRQYDNDLNRW  453 (507)
T ss_pred             cceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccchhhhhhHHhhccchHHHH
Confidence            89999998764321                      234799999988777654332 1110000  0000011111100


Q ss_pred             h-cccchhhhhhhHHHHHHHHHHhccccCCCC---CCCCCHHHHHH
Q 002376          867 M-TSNESQTIQLHDCLITIIGSVGLSCTTESP---GGRIGIREALR  908 (929)
Q Consensus       867 ~-~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP---~~RPs~~ev~~  908 (929)
                      . ...........+.......+++.+++..+|   .+|+|++|+++
T Consensus       454 r~~~~~~~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~  499 (507)
T PLN03224        454 RMYKGQKYDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALS  499 (507)
T ss_pred             HhhcccCCCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhC
Confidence            0 000111111112233344457778888766   68999999974

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.91  E-value=1e-25  Score=246.64  Aligned_cols=227  Identities=24%  Similarity=0.309  Sum_probs=162.7

Q ss_pred             hhCCCCCceeecccCceeEEeccccCc----------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGS----------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~----------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ..++|....++|+|+||.|||+++...                .+-...|+-+++..+|||||.++|.|...+.     .
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dk-----l   87 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDK-----L   87 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcC-----c
Confidence            346788899999999999999998732                2334579999999999999999999865443     7


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+.||||.+|+|++..+...        ....+..+|++|||+.   +=+|||||-.|||+.+.|.+|++|||.+..+..
T Consensus        88 wicMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~---gk~hRdiKGanilltd~gDvklaDfgvsaqita  164 (829)
T KOG0576|consen   88 WICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQ---GKIHRDIKGANILLTDEGDVKLADFGVSAQITA  164 (829)
T ss_pred             EEEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcC---CcccccccccceeecccCceeecccCchhhhhh
Confidence            99999999999999877433        2245677899999998   889999999999999999999999999886632


Q ss_pred             ccCCCCCccccceecccccccccccc---CCCCCCCCCCCCCCcCCCCCcchhHHh-hhcCCchhhhccChHHHHhhccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYG---LGERPSTAGDVPTSESFAGEFNIVKWV-ESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DV~s~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                            .......+.||+.|||||+.   +.+.|..++|||+.|+.+.|..-.+-+ +...|......+..        .
T Consensus       165 ------ti~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmTk--------S  230 (829)
T KOG0576|consen  165 ------TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMTK--------S  230 (829)
T ss_pred             ------hhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhhc--------c
Confidence                  23344568999999999975   345699999999999887763211100 11111111111111        1


Q ss_pred             chhhhhhhH--HHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          871 ESQTIQLHD--CLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       871 ~~~~~~~~~--~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      ..+.+...+  .-.+...++++.|+..+|++||++.-.+
T Consensus       231 ~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL  269 (829)
T KOG0576|consen  231 GFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLL  269 (829)
T ss_pred             CCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhhe
Confidence            111111000  0122333466699999999999987654

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.91  E-value=5.5e-26  Score=215.34  Aligned_cols=175  Identities=22%  Similarity=0.309  Sum_probs=133.9

Q ss_pred             CCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHc-cCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRN-VRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~-l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ......||+|+||.|-+.++.                 +..++..+|+.+..+ ...|.+|.++|.++...     .+++
T Consensus        48 L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~reg-----dvwI  122 (282)
T KOG0984|consen   48 LVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREG-----DVWI  122 (282)
T ss_pred             hhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccc-----cEEE
Confidence            334577999999998554433                 234567788887555 47999999999875433     3899


Q ss_pred             EEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .||.|. .||..+.++.            .+++..|..||.|||++.  .+||||+||+||||+.+|++||||||.+..+
T Consensus       123 cME~M~-tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L  199 (282)
T KOG0984|consen  123 CMELMD-TSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHRDVKPSNILINYDGQVKICDFGISGYL  199 (282)
T ss_pred             eHHHhh-hhHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhccCCcceEEEccCCcEEEcccccceee
Confidence            999995 5777665421            244677899999999975  8999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC----CCCCCCCCCCCcCCCCCcchhHHhhhcCC
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE----RPSTAGDVPTSESFAGEFNIVKWVESNLP  852 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~  852 (929)
                      ...       ...+...|.-.|||||.+..+    .|+.|+||||+|+.+.|+.+..++.....
T Consensus       200 ~dS-------iAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~lr~PY~~w~  256 (282)
T KOG0984|consen  200 VDS-------IAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAILRFPYESWG  256 (282)
T ss_pred             hhh-------hHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhhccccccccC
Confidence            422       122334688899999987643    59999999999999888877766655443

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=5.1e-26  Score=223.54  Aligned_cols=177  Identities=27%  Similarity=0.355  Sum_probs=138.6

Q ss_pred             CCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .+..+.||-|+||+||...++.                  ..+.+.+|++++..++|.||+..+++..-.....-+++|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            3456889999999999776652                  2356789999999999999999988875544333456799


Q ss_pred             EEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      |+|.|. .+|.+.+-..        +.+..||.+||.|||+.   +|.||||||.|.|++.+...||||||+||....+ 
T Consensus       135 ~TELmQ-SDLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA---~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d-  209 (449)
T KOG0664|consen  135 LTELMQ-SDLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTA---NILHRDIKPGNLLVNSNCILKICDFGLARTWDQR-  209 (449)
T ss_pred             HHHHHH-hhhhheeccCCCCCcchhhhhHHHHHhhhHHHhhc---chhhccCCCccEEeccCceEEecccccccccchh-
Confidence            999994 5787766422        23467999999999998   9999999999999999999999999999975432 


Q ss_pred             CCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                          .....+..+-|..|+|||+++|.+ |+.+.||||.||+..|+.-....+
T Consensus       210 ----~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELLgRrILF  258 (449)
T KOG0664|consen  210 ----DRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELLQRKILF  258 (449)
T ss_pred             ----hhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHHhhhhhh
Confidence                112234456789999999999865 899999999998866654444433

>PLN03210 Resistant to P

Probab=99.91  E-value=4.3e-23  Score=262.08  Aligned_cols=345  Identities=22%  Similarity=0.273  Sum_probs=218.6

Q ss_pred             CChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCC-CcccEEEeecccCCCccCCccccCCCCceEEeeecCCC
Q 002376          159 VTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRL-ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG  237 (929)
Q Consensus       159 i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  237 (929)
                      +...+|.++++|+.|.+.++.....  ..+..-+|..|..+ .+|+.|++.+|.+. .+|..| ...+|++|+|++|++.
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~--~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~  624 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQK--KEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE  624 (1153)
T ss_pred             ecHHHHhcCccccEEEEeccccccc--ccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc
Confidence            4556688888888888876643210  01111244555555 35888888888886 556666 5688889999988887


Q ss_pred             CcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecccccc-ccCCCCCC
Q 002376          238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNK-IVSSGDDE  316 (929)
Q Consensus       238 ~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-i~~~~~~~  316 (929)
                       .+|..+.. +++|+.++++++...+.+|. +..+++|+.|+|++|..-..+|..++++++|+.|++++|. +..++.  
T Consensus       625 -~L~~~~~~-l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~--  699 (1153)
T PLN03210        625 -KLWDGVHS-LTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT--  699 (1153)
T ss_pred             -cccccccc-CCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC--
Confidence             67766644 88888888888766566664 7788888899998877666788888888888888888753 433321  


Q ss_pred             CCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCC------
Q 002376          317 GLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS------  390 (929)
Q Consensus       317 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~------  390 (929)
                             ..++++|++|+|++|...+.+|..    ..+|+.|+|++|.+. .+|..+ .+++|+.|++.++...      
T Consensus       700 -------~i~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~  766 (1153)
T PLN03210        700 -------GINLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERV  766 (1153)
T ss_pred             -------cCCCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccc
Confidence                   125778888888888665555542    236888888888876 455554 5677777777764321      


Q ss_pred             -cccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCc
Q 002376          391 -GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI  469 (929)
Q Consensus       391 -~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~  469 (929)
                       ...+..+...++|+.|+|++|...+.+|..+.++++|+.|+|++|..-+.+|..+ ++++|+.|++++|..-..+    
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~----  841 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF----  841 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc----
Confidence             1112222234566666666666555666666666666666666654333455544 5666666666665432222    


Q ss_pred             ccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccc-ccccccCCccccCCCCCCEEECCCC
Q 002376          470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY-NQFSGPIPNIVAELKGLEVLDLSSN  539 (929)
Q Consensus       470 ~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N  539 (929)
                          |.   ..++|+.|+|++|.++ .+|.++..+++|+.|+|++ |+++ .+|..+..+++|+.|+++++
T Consensus       842 ----p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C  903 (1153)
T PLN03210        842 ----PD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDC  903 (1153)
T ss_pred             ----cc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCC
Confidence                21   1235666666666665 4555666666666666665 3344 34445555666666666555

syringae 6; Provisional

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.91  E-value=2.9e-25  Score=234.27  Aligned_cols=204  Identities=22%  Similarity=0.135  Sum_probs=146.9

Q ss_pred             cCceeEEeccccCc-----------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccc
Q 002376          672 GSFGSVLHNERTGS-----------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG  740 (929)
Q Consensus       672 G~~g~Vy~~~~~~~-----------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~  740 (929)
                      |.||+||++++..+           ...+.+|...+....||||+++++++.+.     ...++||||+++|+|.+++..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHCVPNMVCLHKYIVSE-----DSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchhhhhhHHHHHHhcCCCceeehhhheecC-----CeEEEEEecCCCCCHHHHHHH
Confidence            78999998877522           22455676666667899999999998543     358999999999999998754


Q ss_pred             cc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceecccc
Q 002376          741 ER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI  812 (929)
Q Consensus       741 ~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~  812 (929)
                      ..        .++.|++.||+|+|+.   +|+||||||+||+++.++.+|++|||.+......         .....++.
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~---------~~~~~~~~  146 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDALHRE---GIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS---------CDGEAVEN  146 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHEEEcCCCCEEEecccchhccccc---------cccCCcCc
Confidence            32        2357899999999997   9999999999999999999999999988754321         11234577


Q ss_pred             ccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccc
Q 002376          813 GYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSC  892 (929)
Q Consensus       813 ~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~C  892 (929)
                      .|+|||+..+..++.++||||+|++++++.....+....+..........              .+..+..-+++++.+|
T Consensus       147 ~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~li~~~  212 (237)
T cd05576         147 MYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECHPSGINTHTTLN--------------IPEWVSEEARSLLQQL  212 (237)
T ss_pred             cccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcCchhcccccccC--------------CcccCCHHHHHHHHHH
Confidence            89999999888899999999999888876554433322221110000000              0001112223377799


Q ss_pred             cCCCCCCCCCHHHH
Q 002376          893 TTESPGGRIGIREA  906 (929)
Q Consensus       893 l~~dP~~RPs~~ev  906 (929)
                      ++.||++||++.+.
T Consensus       213 l~~dp~~R~~~~~~  226 (237)
T cd05576         213 LQFNPTERLGAGVA  226 (237)
T ss_pred             ccCCHHHhcCCCcc
Confidence            99999999997443

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-25  Score=232.54  Aligned_cols=405  Identities=21%  Similarity=0.229  Sum_probs=244.0

Q ss_pred             ceeeCCCCC---------cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCC-CCCC
Q 002376           63 GVICNNFGN---------RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISF-NNLQ  132 (929)
Q Consensus        63 gv~c~~~~~---------~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~  132 (929)
                      -|.|+..+-         ..++++|..|+++...|.+|..+++|+.||||+|+|+.+-|++|.+|.+|..|-+-+ |+|+
T Consensus        50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            367887542         567999999999966566899999999999999999999999999999998886665 9999


Q ss_pred             CCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccC
Q 002376          133 GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL  212 (929)
Q Consensus       133 ~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l  212 (929)
                      ...-..|++|..|+.|.+.-|++. -++.++|..|++|..|.+..|.+.        .+.-..|..+..++.+.+..|.+
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q--------~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ--------SICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhh--------hhccccccchhccchHhhhcCcc
Confidence            777789999999999999999998 788899999999999999999862        22334788999999999999983


Q ss_pred             C------------CccCCccccCCCCceEEeeecCCCCcCCc-ccccCCCCcceeeccCCcCCCCCC-CcccccccccEE
Q 002376          213 A------------GTVPSTIYNMTSLVHLRLASNQLGGEIPY-DVRDTLPNLLDFIYCFNRFTGKIP-GSLHNLTNIQII  278 (929)
Q Consensus       213 ~------------~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~-~~~~~l~~L~~l~l~~N~l~~~~p-~~~~~l~~L~~L  278 (929)
                      .            -..|..++...-..-..|.++++. .++. .+...+..+..-..+.+..-++-| ..|..+++|+.|
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~-q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l  279 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRIN-QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL  279 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhc-ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence            2            223333444333333334444443 1221 111111111111111222222222 235555566666


Q ss_pred             eccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEE
Q 002376          279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL  358 (929)
Q Consensus       279 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L  358 (929)
                      +|++|+|+++-+.+|..+..++.|.|..|+|..+..       ..|.++.                         .|+.|
T Consensus       280 nlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~-------~~f~~ls-------------------------~L~tL  327 (498)
T KOG4237|consen  280 NLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSS-------GMFQGLS-------------------------GLKTL  327 (498)
T ss_pred             ccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHH-------Hhhhccc-------------------------cceee
Confidence            666666655555555555555555555555443322       2233333                         45556


Q ss_pred             EecCCccccccCCCCCCCCcccEEEeeCCCCCccc-Ccccc---------------CCCCCCEEEecCCcCCCC---Ccc
Q 002376          359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEI-PIEIG---------------QLQGLQVLGLAGNEIPGG---IPN  419 (929)
Q Consensus       359 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~---------------~l~~L~~L~L~~N~l~~~---~p~  419 (929)
                      +|.+|+|+..-|.+|..+.+|.+|+|-.|.+.-.- -.|++               .-..++.+.++.+.+...   .|+
T Consensus       328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~e  407 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPE  407 (498)
T ss_pred             eecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcc
Confidence            66666665555666666666666666555443110 00111               111233333333332210   111


Q ss_pred             cccCCCCCceecccCcccccccCccccccccccee-cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCC
Q 002376          420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI-DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP  498 (929)
Q Consensus       420 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  498 (929)
                      ..+..            -++.-|   ..++.+.+. .-|++.+ ..+|+++    |.      ..++|++.+|.++ .+|
T Consensus       408 e~~~~------------~s~~cP---~~c~c~~tVvRcSnk~l-k~lp~~i----P~------d~telyl~gn~~~-~vp  460 (498)
T KOG4237|consen  408 ELGCL------------TSSPCP---PPCTCLDTVVRCSNKLL-KLLPRGI----PV------DVTELYLDGNAIT-SVP  460 (498)
T ss_pred             ccCCC------------CCCCCC---CCcchhhhhHhhcccch-hhcCCCC----Cc------hhHHHhcccchhc-ccC
Confidence            10000            000011   123334333 3333333 3555443    43      3456778888887 566


Q ss_pred             cchhcCcCcceeecccccccccCCccccCCCCCCEEECCCC
Q 002376          499 NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN  539 (929)
Q Consensus       499 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  539 (929)
                      ..  .+++| .+|+++|+++..-...|.+++.|.+|-||+|
T Consensus       461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             HH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            65  56677 8888888888777778888888888888876

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.90  E-value=2e-24  Score=242.95  Aligned_cols=224  Identities=26%  Similarity=0.293  Sum_probs=157.7

Q ss_pred             CCCceeecccCcee-EEeccccCc---HH--------HHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEEEec
Q 002376          663 FSHENLIGSGSFGS-VLHNERTGS---WK--------SFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       663 ~~~~~~iG~G~~g~-Vy~~~~~~~---~~--------~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      |...+++|.|+.|. ||+|.+.+.   .+        ...+|+..++.- +|||||++++.-     +..++.|+..|.|
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~~~A~rEi~lL~eSD~H~NviRyyc~E-----~d~qF~YIalELC  585 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFFDFAQREIQLLQESDEHPNVIRYYCSE-----QDRQFLYIALELC  585 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhHHHHHHHHHHHHhccCCCceEEEEeec-----cCCceEEEEehHh
Confidence            44557889998875 588887643   12        234799998888 599999988764     4556799999999


Q ss_pred             CCCCcccccccc-c-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---C--CceEEecccccccc
Q 002376          730 SNGSLGDWIHGE-R-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---E--MTAKVGDFGLARFL  792 (929)
Q Consensus       730 ~~gsL~~~l~~~-~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~--~~~ki~DfGla~~~  792 (929)
                      . .+|.++++.. .           ....|++.|+++||+.   +|||||+||.||||+.   +  .+++|+|||+++.+
T Consensus       586 ~-~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl---~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl  661 (903)
T KOG1027|consen  586 A-CSLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSL---KIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKL  661 (903)
T ss_pred             h-hhHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhc---ccccccCCCceEEEEccCCCcceeEEeccccccccc
Confidence            5 5999998752 1           1245799999999997   9999999999999975   3  47999999999988


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh-HHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV-KWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ..+..+-   .......||-||+|||++...+-+.++||+|+||+.|..... .-+++..-++-..++.-. ...   ..
T Consensus       662 ~~~~sS~---~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R~~NIl~~~-~~L---~~  734 (903)
T KOG1027|consen  662 AGGKSSF---SRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLERQANILTGN-YTL---VH  734 (903)
T ss_pred             CCCcchh---hcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHhhhhhhcCc-cce---ee
Confidence            6543322   224556899999999999999999999999999987764332 222221111111111100 000   00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      -  ....++   ..++|+.++++++|..||++.+|+
T Consensus       735 L--~~~~d~---eA~dLI~~ml~~dP~~RPsa~~VL  765 (903)
T KOG1027|consen  735 L--EPLPDC---EAKDLISRMLNPDPQLRPSATDVL  765 (903)
T ss_pred             e--ccCchH---HHHHHHHHhcCCCcccCCCHHHHh
Confidence            0  001112   233488899999999999999986

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=1.5e-24  Score=235.07  Aligned_cols=189  Identities=24%  Similarity=0.310  Sum_probs=146.1

Q ss_pred             ChHHHHHhh---CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceee
Q 002376          652 SYDELRRAT---GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLIT  709 (929)
Q Consensus       652 ~~~~l~~~~---~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~  709 (929)
                      .|-.|++|.   .-|...+.||-|+||+|..++...                   .....++|-.+|+.-+.+.||+|+.
T Consensus       617 nYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyy  696 (1034)
T KOG0608|consen  617 NYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYY  696 (1034)
T ss_pred             hHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEE
Confidence            344555554   347788999999999998765431                   2234567999999999999999999


Q ss_pred             ecccCCCCCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCce
Q 002376          710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA  781 (929)
Q Consensus       710 ~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~  781 (929)
                      .|.+.+     .+|+||||++||++..+|-+.        |.+..+++.|+++.|..   |+|||||||.|||||.+|.+
T Consensus       697 SFQDkd-----nLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkm---GFIHRDiKPDNILIDrdGHI  768 (1034)
T KOG0608|consen  697 SFQDKD-----NLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKM---GFIHRDIKPDNILIDRDGHI  768 (1034)
T ss_pred             EeccCC-----ceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc---cceecccCccceEEccCCce
Confidence            885544     499999999999999887532        34456788999999987   99999999999999999999


Q ss_pred             EEeccccccccc---------cccCCCC---------------------------CccccceeccccccccccccCCCCC
Q 002376          782 KVGDFGLARFLL---------ERVDNQS---------------------------SISSTHVFMGSIGYVPPEYGLGERP  825 (929)
Q Consensus       782 ki~DfGla~~~~---------~~~~~~~---------------------------~~~~~~~~~gt~~y~aPE~~~~~~~  825 (929)
                      |+.|||++.-+.         +......                           ........+||+.|+|||++....|
T Consensus       769 KLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~  848 (1034)
T KOG0608|consen  769 KLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGY  848 (1034)
T ss_pred             eeeeccccccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCc
Confidence            999999986321         0000000                           0001234579999999999999999


Q ss_pred             CCCCCCCCCcCCCCCcchhHHhh
Q 002376          826 STAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       826 ~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      +..+|-||.|+++|||.++.-++
T Consensus       849 ~q~cdwws~gvil~em~~g~~pf  871 (1034)
T KOG0608|consen  849 TQLCDWWSVGVILYEMLVGQPPF  871 (1034)
T ss_pred             cccchhhHhhHHHHHHhhCCCCc
Confidence            99999999999988876665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=3.6e-23  Score=243.63  Aligned_cols=265  Identities=25%  Similarity=0.328  Sum_probs=152.8

Q ss_pred             CCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEcc
Q 002376           97 LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG  176 (929)
Q Consensus        97 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls  176 (929)
                      -..|+|++|.|+ .+|+.+.  .+|+.|++++|+|+. +|..   +++|++|+|++|+|+ .+|..    .++|+.|+|+
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPAL---PPELRTLEVSGNQLT-SLPVL----PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCCC---CCCCcEEEecCCccC-cccCc----ccccceeecc
Confidence            456666666666 5666554  356666666666663 4432   356666666666666 44431    2456666666


Q ss_pred             ccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeec
Q 002376          177 KNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY  256 (929)
Q Consensus       177 ~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l  256 (929)
                      +|.++. +|        .   ..++|+.|+|++|+|+. +|..   .++|++|+|++|+|+ .+|..    ..+|..|++
T Consensus       271 ~N~L~~-Lp--------~---lp~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~L  329 (788)
T PRK15387        271 SNPLTH-LP--------A---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPAL----PSELCKLWA  329 (788)
T ss_pred             CCchhh-hh--------h---chhhcCEEECcCCcccc-cccc---ccccceeECCCCccc-cCCCC----ccccccccc
Confidence            665532 11        1   11345566666666653 2321   345666666666665 23321    123444444


Q ss_pred             cCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEcc
Q 002376          257 CFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD  336 (929)
Q Consensus       257 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls  336 (929)
                      ++|++++ +|..   ..+|+.|+|++|+|++ +|..                                  ..+|+.|+++
T Consensus       330 s~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l----------------------------------p~~L~~L~Ls  370 (788)
T PRK15387        330 YNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL----------------------------------PSELYKLWAY  370 (788)
T ss_pred             ccCcccc-cccc---ccccceEecCCCccCC-CCCC----------------------------------Ccccceehhh
Confidence            4444443 2221   1244555555555542 2211                                  1345566666


Q ss_pred             CCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCC
Q 002376          337 GNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGG  416 (929)
Q Consensus       337 ~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  416 (929)
                      +|+|+ .+|...    .+|+.|+|++|+|++ +|..   .++|+.|++++|+|++ +|..   ..+|+.|++++|+|+ .
T Consensus       371 ~N~L~-~LP~l~----~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~  436 (788)
T PRK15387        371 NNRLT-SLPALP----SGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-R  436 (788)
T ss_pred             ccccc-cCcccc----cccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-c
Confidence            66666 355422    257777777777774 4433   2567788888888874 5543   245777888888887 5


Q ss_pred             CcccccCCCCCceecccCcccccccCccccc
Q 002376          417 IPNSLANLKKLNQIDLSGNELTGEIPISFGN  447 (929)
Q Consensus       417 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  447 (929)
                      +|..+.++++|+.|+|++|+|++..+..+..
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~  467 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLSERTLQALRE  467 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence            7888888888888888888888776665533

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.90  E-value=2.6e-24  Score=217.02  Aligned_cols=175  Identities=25%  Similarity=0.291  Sum_probs=141.8

Q ss_pred             hCCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHcc-CCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..++||+|+|.+|..++.+++                   ..-...|..+..+. +||.+|.++.+|.     ..
T Consensus       249 l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfq-----te  323 (593)
T KOG0695|consen  249 LQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQ-----TE  323 (593)
T ss_pred             cccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhc-----cc
Confidence            45788999999999999988776532                   12234566566554 7999999998883     44


Q ss_pred             ceEEEEEEecCCCCcccccccccc--------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~~--------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..+++|.||+++|+|.-+++++|+        +..+|+.||.|||++   +||.||+|..|||+|..|.+|+.|+|+++.
T Consensus       324 srlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~r---giiyrdlkldnvlldaeghikltdygmcke  400 (593)
T KOG0695|consen  324 SRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHER---GIIYRDLKLDNVLLDAEGHIKLTDYGMCKE  400 (593)
T ss_pred             ceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhc---CeeeeeccccceEEccCCceeecccchhhc
Confidence            458999999999999988875553        356799999999998   999999999999999999999999999984


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      -      -.....+..++|||.|+|||++++..|+.++|-|++|+.++||....-++
T Consensus       401 ~------l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspf  451 (593)
T KOG0695|consen  401 G------LGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPF  451 (593)
T ss_pred             C------CCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCc
Confidence            2      12233456789999999999999999999999999998877765554444

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.89  E-value=4.3e-24  Score=230.19  Aligned_cols=168  Identities=22%  Similarity=0.321  Sum_probs=139.5

Q ss_pred             hCCCCCceeecccCceeEEeccccCcH------------------------HHHHHHHHHHHccC---Cccccceeeecc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGSW------------------------KSFIAECETLRNVR---HRNLVKLITSCS  712 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~------------------------~~~~~E~~~l~~l~---Hpniv~l~~~~~  712 (929)
                      ..+|...+.+|+|+||.|+.|.++...                        -..-.|+++|+.++   |+||++++++| 
T Consensus       560 ~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfF-  638 (772)
T KOG1152|consen  560 FSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFF-  638 (772)
T ss_pred             cccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhee-
Confidence            346888999999999999988876221                        12336999999997   99999999999 


Q ss_pred             cCCCCCcceEEEEEEec-CCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          713 SLDSKNMEFLALVYEFL-SNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~-~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                          ++.+++|++||-- ++-+|++++..        .+.+..||+.|+++||++   +|||||||-+||.+|.+|-+|+
T Consensus       639 ----Eddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~---~ivhrdikdenvivd~~g~~kl  711 (772)
T KOG1152|consen  639 ----EDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQ---GIVHRDIKDENVIVDSNGFVKL  711 (772)
T ss_pred             ----ecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhcccccccc---CceecccccccEEEecCCeEEE
Confidence                4455689999964 55689999863        234568999999999998   9999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcch
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNI  843 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~  843 (929)
                      .|||.|....        ......++||.+|.|||++.|.+| +..-|||++|+.+|.+..
T Consensus       712 idfgsaa~~k--------sgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivy  764 (772)
T KOG1152|consen  712 IDFGSAAYTK--------SGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVY  764 (772)
T ss_pred             eeccchhhhc--------CCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEe
Confidence            9999987652        123456899999999999999987 888999999998887543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.89  E-value=1.1e-22  Score=239.65  Aligned_cols=264  Identities=25%  Similarity=0.316  Sum_probs=120.7

Q ss_pred             cccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEec
Q 002376          201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRM  280 (929)
Q Consensus       201 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~L  280 (929)
                      +-..|+|+.|.|+ .+|..+.  ++|+.|++++|+|+ .+|..    .++                        |++|+|
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~------------------------Lk~LdL  249 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPE------------------------LRTLEV  249 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCC------------------------CcEEEe
Confidence            4567788888887 4566554  36777888887776 34431    234                        444444


Q ss_pred             cCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEe
Q 002376          281 THNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL  360 (929)
Q Consensus       281 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  360 (929)
                      ++|+|+. +|..   .++|+.|++++|.+..++.           ..++|+.|+|++|+++ .+|..    +++|+.|+|
T Consensus       250 s~N~Lts-LP~l---p~sL~~L~Ls~N~L~~Lp~-----------lp~~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdL  309 (788)
T PRK15387        250 SGNQLTS-LPVL---PPGLLELSIFSNPLTHLPA-----------LPSGLCKLWIFGNQLT-SLPVL----PPGLQELSV  309 (788)
T ss_pred             cCCccCc-ccCc---ccccceeeccCCchhhhhh-----------chhhcCEEECcCCccc-ccccc----ccccceeEC
Confidence            4444442 2321   1233333444443332211           0123444555555554 23321    124555555


Q ss_pred             cCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccc
Q 002376          361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE  440 (929)
Q Consensus       361 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  440 (929)
                      ++|+|++ +|...   .+|+.|++++|+|++ +|..   ..+|++|+|++|+|++ +|..   ..+|+.|++++|+|++ 
T Consensus       310 S~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-  376 (788)
T PRK15387        310 SDNQLAS-LPALP---SELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-  376 (788)
T ss_pred             CCCcccc-CCCCc---ccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-
Confidence            5555543 22211   234445555555542 3321   1245555555555543 2221   1234445555555542 


Q ss_pred             cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccccccc
Q 002376          441 IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP  520 (929)
Q Consensus       441 ~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  520 (929)
                      +|..   ..+|+.|++++|+|++ +|        ..   .++|+.||+++|+|++ +|..+   .+|+.|++++|+|+ .
T Consensus       377 LP~l---~~~L~~LdLs~N~Lt~-LP--------~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~  436 (788)
T PRK15387        377 LPAL---PSGLKELIVSGNRLTS-LP--------VL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-R  436 (788)
T ss_pred             Cccc---ccccceEEecCCcccC-CC--------Cc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-c
Confidence            3322   1345555555555542 21        11   1244555555555542 33322   23444555555554 3


Q ss_pred             CCccccCCCCCCEEECCCCcCCCcCCccc
Q 002376          521 IPNIVAELKGLEVLDLSSNKLSGSIPSDL  549 (929)
Q Consensus       521 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  549 (929)
                      +|..+..+++|+.|+|++|+|++.+|..+
T Consensus       437 LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        437 LPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            44445555555555555555555444433

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.88  E-value=4.3e-22  Score=236.41  Aligned_cols=356  Identities=19%  Similarity=0.288  Sum_probs=190.3

Q ss_pred             CChhhHHHHHHHHhhcCCCCCCCCCCC----CCCCCCCCCCcc----------------eeeCCCCCcEEEEEcCCCCCc
Q 002376           25 GINTDKEALMSFKSQISQESPSSPLSY----WNPSSSPCTWPG----------------VICNNFGNRVIGLNLSSFGLE   84 (929)
Q Consensus        25 ~~~~~~~aLl~~k~~~~~~~~~~~l~~----w~~~~~~c~w~g----------------v~c~~~~~~v~~l~l~~~~l~   84 (929)
                      ..++|.+.+++..+.+..   .+.+.+    |+.+.+.|.-..                |.|..  +.|+.+...+....
T Consensus        60 ~~~~~~~~~~~~~~~l~~---p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~~~  134 (754)
T PRK15370         60 ASPEEIKSKFECLRMLAF---PAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESEQA  134 (754)
T ss_pred             CCHHHHHHHHHHHHHhcC---CchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccccc
Confidence            357899999999999854   345555    998889996554                55653  45666554442211


Q ss_pred             cccCC--CC-------------------------------CCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCC
Q 002376           85 GTISP--HI-------------------------------GNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL  131 (929)
Q Consensus        85 g~i~~--~l-------------------------------~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  131 (929)
                      .....  +.                               +--.+.+.|+|++++++ .+|..+.  ++|+.|+|++|+|
T Consensus       135 ~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~L  211 (754)
T PRK15370        135 SSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNEL  211 (754)
T ss_pred             ccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCC
Confidence            11100  00                               00123444555554444 3343332  2444555555554


Q ss_pred             CCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeeccc
Q 002376          132 QGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR  211 (929)
Q Consensus       132 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~  211 (929)
                      + .+|..+.  ++|++|+|++|+|+ .+|.. +.  .+|                                +.|+|++|+
T Consensus       212 t-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l~--~~L--------------------------------~~L~Ls~N~  252 (754)
T PRK15370        212 K-SLPENLQ--GNIKTLYANSNQLT-SIPAT-LP--DTI--------------------------------QEMELSINR  252 (754)
T ss_pred             C-cCChhhc--cCCCEEECCCCccc-cCChh-hh--ccc--------------------------------cEEECcCCc
Confidence            4 2333222  24455555555444 33332 11  234                                444555554


Q ss_pred             CCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccC
Q 002376          212 LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPP  291 (929)
Q Consensus       212 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  291 (929)
                      +. .+|..+.  ++|+.|+|++|+|+ .+|..+.   ++|+.|++++|++++ +|..+.  ++|+.|++++|.++. +|.
T Consensus       253 L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~  321 (754)
T PRK15370        253 IT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPE  321 (754)
T ss_pred             cC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCc
Confidence            44 2333332  24455555555554 3443332   244555555555543 233222  356666666666663 343


Q ss_pred             CCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCC
Q 002376          292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA  371 (929)
Q Consensus       292 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~  371 (929)
                      .+.  ++|+.|++++|.+..++.        .+  .++|+.|+|++|+|+ .+|..+.   ..|+.|+|++|+|+. +|.
T Consensus       322 ~l~--~sL~~L~Ls~N~Lt~LP~--------~l--~~sL~~L~Ls~N~L~-~LP~~lp---~~L~~LdLs~N~Lt~-LP~  384 (754)
T PRK15370        322 TLP--PGLKTLEAGENALTSLPA--------SL--PPELQVLDVSKNQIT-VLPETLP---PTITTLDVSRNALTN-LPE  384 (754)
T ss_pred             ccc--ccceeccccCCccccCCh--------hh--cCcccEEECCCCCCC-cCChhhc---CCcCEEECCCCcCCC-CCH
Confidence            322  466666777776655432        11  257888888888887 5676543   368888888888874 454


Q ss_pred             CCCCCCcccEEEeeCCCCCcccCccc----cCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCccccc-ccCcccc
Q 002376          372 SIGRLRSLTLLDLSYNSISGEIPIEI----GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG-EIPISFG  446 (929)
Q Consensus       372 ~~~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~  446 (929)
                      .+.  .+|+.|++++|+|+ .+|..+    +.++++..|++.+|.++.      ..+.+|+.| ++.+.+.| .++...+
T Consensus       385 ~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~  454 (754)
T PRK15370        385 NLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMG  454 (754)
T ss_pred             hHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCccccccc
Confidence            443  36888888888887 445443    445778889999998862      334455555 44455543 3344445


Q ss_pred             cccccceecccCCcCCCCC
Q 002376          447 NFQSLLSIDLSNNRINGNI  465 (929)
Q Consensus       447 ~l~~L~~L~Ls~N~l~g~i  465 (929)
                      .+.+++....-.+.+++.+
T Consensus       455 ~~~~l~~~~~l~~a~~~Wl  473 (754)
T PRK15370        455 DFSIVRVTRPLHQAVQGWL  473 (754)
T ss_pred             ccccccccchHHHHHhccC
Confidence            5555555444444444433

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.88  E-value=6.5e-23  Score=216.44  Aligned_cols=201  Identities=29%  Similarity=0.317  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhh
Q 002376          686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHN  757 (929)
Q Consensus       686 ~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~  757 (929)
                      .+.+.+|++.+++++|+|++++++++...     ...++||||+++++|.+++....        ....++++|++|||+
T Consensus        31 ~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-----~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~  105 (244)
T smart00220       31 RERILREISILKKLKHPNIVRLYDVFEDE-----DKLYLVMEYCDGGDLFDLLKKRGRLSEDEARFYARQILSALEYLHS  105 (244)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHhheeeC-----CEEEEEEeCCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999998643     34899999999999999886433        235689999999999


Q ss_pred             CCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCC
Q 002376          758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESF  837 (929)
Q Consensus       758 ~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~  837 (929)
                      .   +++|+||+|+||++++++.++++|||.+.......       ......|+..|+|||...+..++.++|||++|++
T Consensus       106 ~---~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~-------~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~  175 (244)
T smart00220      106 N---GIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG-------LLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVI  175 (244)
T ss_pred             c---CeecCCcCHHHeEECCCCcEEEccccceeeecccc-------ccccccCCcCCCCHHHHccCCCCchhhHHHHHHH
Confidence            8   99999999999999999999999999998764321       1233468889999999988889999999999977


Q ss_pred             CCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH-HHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          838 AGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD-CLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       838 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ++++.....++....+ .     ................... ...++.. ++.+|+..+|++||++.++++
T Consensus       176 l~~l~~~~~p~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~~~p~~Rp~~~~~~~  240 (244)
T smart00220      176 LYELLTGKPPFPGDDQ-L-----LELFKKIGKPKPPFPPPEWKISPEAKD-LIRKLLVKDPEKRLTAEEALQ  240 (244)
T ss_pred             HHHHHhCCCCCCCCCc-H-----HHHHHHHhccCCCCccccccCCHHHHH-HHHHHccCCchhccCHHHHhh
Confidence            6664433222211110 0     0111111111100000000 1122333 777999999999999999986

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.87  E-value=2.2e-23  Score=210.84  Aligned_cols=213  Identities=22%  Similarity=0.300  Sum_probs=150.6

Q ss_pred             cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcceEEEEEEecCCCCcccccc------ccccccccHHHHHHHhhh
Q 002376          685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFLALVYEFLSNGSLGDWIH------GERKNELDITSALDYLHN  757 (929)
Q Consensus       685 ~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~~lV~e~~~~gsL~~~l~------~~~~~~~~ia~aL~yLH~  757 (929)
                      ..++..+|...+..+.|+||++++.++.-... .....+|+|||||. ++|...+.      ..+.+..|++.|++|||+
T Consensus        58 ~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~-~nl~~vi~~elDH~tis~i~yq~~~~ik~lhs  136 (369)
T KOG0665|consen   58 HAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMD-ANLCQVILMELDHETISYILYQMLCGIKHLHS  136 (369)
T ss_pred             cchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhh-hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Confidence            34566789999999999999999999865332 12345799999994 68877765      123457899999999999


Q ss_pred             CCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCC
Q 002376          758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESF  837 (929)
Q Consensus       758 ~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~  837 (929)
                      .   +|+||||||+||++..++.+||.|||+|+.-.      .. ...+..+.|..|.|||++.+..+.+.+||||.||+
T Consensus       137 ~---~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~------~~-~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci  206 (369)
T KOG0665|consen  137 A---GIIHRDLKPSNIVVNSDCTLKILDFGLARTED------TD-FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCI  206 (369)
T ss_pred             c---ceeecccCcccceecchhheeeccchhhcccC------cc-cccCchhheeeccCchheeccCCcccchhhhhhhH
Confidence            8   99999999999999999999999999998431      11 23455678999999999999999999999999998


Q ss_pred             CCCcchhHHhhhc---------------CCc-hhhhccChHHHHhhcccch--------------hhh--hhhHHHHHHH
Q 002376          838 AGEFNIVKWVESN---------------LPE-NVLQVLDPELRQLMTSNES--------------QTI--QLHDCLITII  885 (929)
Q Consensus       838 ~~~~~~~~~~~~~---------------~~~-~~~~~~~~~l~~~~~~~~~--------------~~~--~~~~~~~~~~  885 (929)
                      ..|+......+..               .|+ .+.+.+.+..+-.....+.              ...  +....-..+.
T Consensus       207 ~gEli~~~Vlf~g~d~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~a  286 (369)
T KOG0665|consen  207 MGELILGTVLFPGKDHIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLA  286 (369)
T ss_pred             HHHHhhceEEecCchHHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHH
Confidence            8776544332211               011 1211111111111110000              000  0000113466


Q ss_pred             HHHhccccCCCCCCCCCHHHHHH
Q 002376          886 GSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       886 ~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ++++.+++..||++|.+++++++
T Consensus       287 rdll~~MLvi~pe~Risv~daL~  309 (369)
T KOG0665|consen  287 RDLLSKMLVIDPEKRISVDDALR  309 (369)
T ss_pred             HHHHHHhhccChhhcccHHHHhc
Confidence            77899999999999999999875

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.87  E-value=1.1e-23  Score=202.40  Aligned_cols=170  Identities=23%  Similarity=0.345  Sum_probs=137.5

Q ss_pred             hhCCCCCceeecccCceeEEecccc-------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT-------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~-------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+++|+|-|++||.|...             ...+...+|+.+++.+. ||||++++++..++.++   ...+
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkkkKIkREikIL~nL~gg~NIi~L~DiV~Dp~Sk---tpaL  112 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKKKKIKREIKILQNLRGGPNIIKLLDIVKDPESK---TPSL  112 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHHHHHHHHHHHHHhccCCCCeeehhhhhcCcccc---Cchh
Confidence            3568888999999999999998743             23567899999999997 99999999999876553   3689


Q ss_pred             EEEecCCCCcccccc-----ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEeccccccccccccCC
Q 002376          725 VYEFLSNGSLGDWIH-----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       725 V~e~~~~gsL~~~l~-----~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfGla~~~~~~~~~  798 (929)
                      |+||+.+.+......     +.+....+++.||.|+|+.   ||+|||+||.||+||.. -..++.|+|+|.+..++.  
T Consensus       113 iFE~v~n~Dfk~ly~tl~d~dIryY~~elLkALdyCHS~---GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~--  187 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLTDYDIRYYIYELLKALDYCHSM---GIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGK--  187 (338)
T ss_pred             HhhhhccccHHHHhhhhchhhHHHHHHHHHHHHhHHHhc---CcccccCCcceeeechhhceeeeeecchHhhcCCCc--
Confidence            999999887765543     3455678999999999998   99999999999999965 479999999999875331  


Q ss_pred             CCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCc
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEF  841 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~  841 (929)
                           .....+.+..|--||.+..-+ |+.+-|+||+||.+.++
T Consensus       188 -----eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~m  226 (338)
T KOG0668|consen  188 -----EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASM  226 (338)
T ss_pred             -----eeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHH
Confidence                 123346678889999987654 88999999999765443

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=3.2e-22  Score=197.29  Aligned_cols=229  Identities=20%  Similarity=0.210  Sum_probs=158.4

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|.+.+.+|+|.||++..+++++               ..++|.+|...--.+ .|.||+.-+++-++    ..+++++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFq----t~d~YvF   99 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQ----TSDAYVF   99 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeeccchhhhHHHHHHhh----cCceEEE
Confidence            467788999999999999888763               357888888765555 58999998887654    4456889


Q ss_pred             EEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee-c-CCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL-D-EEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl-~-~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||+|.|+|..-+...       ++++.|++.|++|||+.   .+||||||.+|||| + +..++|+||||..+.... 
T Consensus       100 ~qE~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsk---nlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~-  175 (378)
T KOG1345|consen  100 VQEFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSK---NLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT-  175 (378)
T ss_pred             eeccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhcc---chhhcccccceEEEecCCccEEEeeecccccccCc-
Confidence            99999999999887632       34578999999999998   99999999999999 3 344899999999875421 


Q ss_pred             cCCCCCccccceeccccccccccccCCC-----CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-----RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                              .-.....+..|-|||.....     ...+..|||.||++.+.+.++..+|..     ..+.|+....+..-.
T Consensus       176 --------tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PWQk-----a~~~d~~Y~~~~~w~  242 (378)
T KOG1345|consen  176 --------TVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPWQK-----ASIMDKPYWEWEQWL  242 (378)
T ss_pred             --------eehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcchh-----hhccCchHHHHHHHh
Confidence                    11112345679999976432     257889999999888777666555542     223344333322111


Q ss_pred             chhhhhhh----HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          871 ESQTIQLH----DCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       871 ~~~~~~~~----~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      .......+    ..-.++++ +..+-+.++|++|-...++.++..
T Consensus       243 ~rk~~~~P~~F~~fs~~a~r-~Fkk~lt~~~~drcki~~~kk~rk  286 (378)
T KOG1345|consen  243 KRKNPALPKKFNPFSEKALR-LFKKSLTPRFKDRCKIWTAKKMRK  286 (378)
T ss_pred             cccCccCchhhcccCHHHHH-HHHHhcCCcccccchhHHHHHHHH
Confidence            11111111    11233444 666889999999966666655543

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.85  E-value=3.6e-22  Score=209.92  Aligned_cols=183  Identities=24%  Similarity=0.298  Sum_probs=138.7

Q ss_pred             HHHhhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC-CccccceeeecccCCCC
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSK  717 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~  717 (929)
                      +....+.|..+++||+|.|++||++....                 ......+|++.|..+. +.||+++.+++     +
T Consensus        31 ~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~p~ri~~El~~L~~~gG~~ni~~~~~~~-----r  105 (418)
T KOG1167|consen   31 IPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSSPSRILNELEMLYRLGGSDNIIKLNGCF-----R  105 (418)
T ss_pred             hhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccCchHHHHHHHHHHHhccchhhhcchhhh-----c
Confidence            33445678899999999999999987642                 3456889999999995 99999999998     4


Q ss_pred             CcceEEEEEEecCCCCccccccc-----cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEeccccccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARF  791 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~-----~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~  791 (929)
                      ......+|+||++.-+..++...     .+.+......||+|+|..   |||||||||+|+|.+. .+.-.|.|||+|..
T Consensus       106 nnd~v~ivlp~~~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~---GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  106 NNDQVAIVLPYFEHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKN---GIVHRDIKPSNFLYNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             cCCeeEEEecccCccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhcc---CccccCCCccccccccccCCceEEechhHHH
Confidence            45568999999999888777653     345567889999999998   9999999999999975 45789999999983


Q ss_pred             ccccc------C------C--------------------------CCCccccceeccccccccccccCCCC-CCCCCCCC
Q 002376          792 LLERV------D------N--------------------------QSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVP  832 (929)
Q Consensus       792 ~~~~~------~------~--------------------------~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~  832 (929)
                      ...+.      .      .                          ..........+||+||+|||++...+ .++++|||
T Consensus       183 ~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiw  262 (418)
T KOG1167|consen  183 YDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIW  262 (418)
T ss_pred             HHhhhhhhhhhhhhcccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCcccee
Confidence            21100      0      0                          00000112346999999999987654 79999999


Q ss_pred             CCcCCCCCcchhHH
Q 002376          833 TSESFAGEFNIVKW  846 (929)
Q Consensus       833 s~g~~~~~~~~~~~  846 (929)
                      |.|++...+.....
T Consensus       263 s~GVI~Lslls~~~  276 (418)
T KOG1167|consen  263 SAGVILLSLLSRRY  276 (418)
T ss_pred             eccceeehhhcccc
Confidence            99988665443333

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.85  E-value=1.1e-21  Score=201.92  Aligned_cols=186  Identities=31%  Similarity=0.470  Sum_probs=150.6

Q ss_pred             ecccCceeEEeccccC-------------c----HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCC
Q 002376          669 IGSGSFGSVLHNERTG-------------S----WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSN  731 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~-------------~----~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~  731 (929)
                      ||+|++|.||++....             .    .+.+.+|++.++.++|++++++++++...     ...++||||+++
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~-----~~~~~~~e~~~~   75 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDE-----NHLYLVMEYCEG   75 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecC-----CeEEEEEecCCC
Confidence            6899999999987651             1    25789999999999999999999998543     458999999999


Q ss_pred             CCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEeccccccccccccCCCCC
Q 002376          732 GSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       732 gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      ++|.+++...         .....+++++++|||+.   +++|+||+|.||+++. ++.++|+|||.+........    
T Consensus        76 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~----  148 (215)
T cd00180          76 GSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSN---GIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS----  148 (215)
T ss_pred             CcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc----
Confidence            9999998643         12356899999999998   9999999999999999 89999999999986532210    


Q ss_pred             ccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHH
Q 002376          802 ISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDC  880 (929)
Q Consensus       802 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  880 (929)
                        ......+...|++||..... .++.+.|+|++|++++++                                     ..
T Consensus       149 --~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l-------------------------------------~~  189 (215)
T cd00180         149 --LLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL-------------------------------------PE  189 (215)
T ss_pred             --hhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH-------------------------------------HH
Confidence              12234578899999999887 789999999999766553                                     01


Q ss_pred             HHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          881 LITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       881 ~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      +.+    ++.+|++.+|++||+++++++.
T Consensus       190 ~~~----~l~~~l~~~p~~R~~~~~l~~~  214 (215)
T cd00180         190 LKD----LIRKMLQKDPEKRPSAKEILEH  214 (215)
T ss_pred             HHH----HHHHHhhCCcccCcCHHHHhhC
Confidence            222    6669999999999999999864

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.83  E-value=1e-20  Score=224.78  Aligned_cols=118  Identities=25%  Similarity=0.478  Sum_probs=56.0

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      +|++|+|++|+|+ .+|..+.   .+|+.|++++|+++. +|..+.  ++|+.|++++|.+++ +|..+.  ++|+.|++
T Consensus       284 sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~L  353 (754)
T PRK15370        284 ELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDV  353 (754)
T ss_pred             CCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCcccc--ccceeccccCCcccc-CChhhc--CcccEEEC
Confidence            4555555555555 2443322   245555666665553 233221  355555555555553 343332  45555555


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCC
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  462 (929)
                      ++|+|+ .+|..+.  ++|+.|+|++|+|+. +|..+.  .+|+.|++++|+|+
T Consensus       354 s~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~  401 (754)
T PRK15370        354 SKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV  401 (754)
T ss_pred             CCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc
Confidence            555554 2333332  345555555555552 333322  23555555555554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.83  E-value=4e-22  Score=246.07  Aligned_cols=196  Identities=16%  Similarity=0.150  Sum_probs=125.3

Q ss_pred             HccCC-ccccceeeecccCCCC--CcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEE
Q 002376          697 RNVRH-RNLVKLITSCSSLDSK--NMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVV  764 (929)
Q Consensus       697 ~~l~H-pniv~l~~~~~~~~~~--~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~ii  764 (929)
                      +.++| +||++++++|......  ....++.++||+ +++|.++++...         .++.||++||+|||++   +|+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---gIv  102 (793)
T PLN00181         27 KSLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQ---GIV  102 (793)
T ss_pred             chhhHHHHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence            45567 6899999987433211  123467889988 569999996422         2367999999999998   999


Q ss_pred             ecCCCCCCeeecC-------------------CCceEEeccccccccccccCC----------CCCccccceeccccccc
Q 002376          765 HSDLKPGNILLDE-------------------EMTAKVGDFGLARFLLERVDN----------QSSISSTHVFMGSIGYV  815 (929)
Q Consensus       765 HrDlk~~NILl~~-------------------~~~~ki~DfGla~~~~~~~~~----------~~~~~~~~~~~gt~~y~  815 (929)
                      ||||||+|||++.                   ++.+|++|||+++........          ..........+||+.||
T Consensus       103 HrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~  182 (793)
T PLN00181        103 VHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYT  182 (793)
T ss_pred             eccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceE
Confidence            9999999999954                   445667777776542110000          00000112246899999


Q ss_pred             cccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch-hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccC
Q 002376          816 PPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN-VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTT  894 (929)
Q Consensus       816 aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~  894 (929)
                      |||++.+..++.++||||+||++||+....     .+.. ....+........+.      .......+... ++.+||+
T Consensus       183 APE~~~~~~~~~~sDVwSlGviL~ELl~~~-----~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-~~~~~L~  250 (793)
T PLN00181        183 SPEEDNGSSSNCASDVYRLGVLLFELFCPV-----SSREEKSRTMSSLRHRVLPP------QILLNWPKEAS-FCLWLLH  250 (793)
T ss_pred             ChhhhccCCCCchhhhhhHHHHHHHHhhCC-----CchhhHHHHHHHHHHhhcCh------hhhhcCHHHHH-HHHHhCC
Confidence            999999999999999999999888864321     1211 001111000111100      00011222333 7779999


Q ss_pred             CCCCCCCCHHHHHH
Q 002376          895 ESPGGRIGIREALR  908 (929)
Q Consensus       895 ~dP~~RPs~~ev~~  908 (929)
                      ++|.+||+|+|+++
T Consensus       251 ~~P~~Rps~~eil~  264 (793)
T PLN00181        251 PEPSCRPSMSELLQ  264 (793)
T ss_pred             CChhhCcChHHHhh
Confidence            99999999999975

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=6.1e-21  Score=208.77  Aligned_cols=158  Identities=20%  Similarity=0.178  Sum_probs=119.7

Q ss_pred             HHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      .....++|...+.||+|+||+||+|.+..                      ..+.|.+|++++++++|+|+++.+..+  
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~--   90 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT--   90 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc--
Confidence            34456789999999999999999986531                      023588999999999999998633222  


Q ss_pred             CCCCCcceEEEEEEecCCCCcccccc-ccccccccHHHHHHHhhhCCCCCEEecCC-CCCCeeecCCCceEEeccccccc
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIH-GERKNELDITSALDYLHNDCEVPVVHSDL-KPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~-~~~~~~~~ia~aL~yLH~~~~~~iiHrDl-k~~NILl~~~~~~ki~DfGla~~  791 (929)
                            +..|+||||+++++|..... ....+..++++||+|||+.   +|+|||| ||+|||++.++.+||+|||+|+.
T Consensus        91 ------~~~~LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~---gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~  161 (365)
T PRK09188         91 ------GKDGLVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRA---GITHNDLAKPQNWLMGPDGEAAVIDFQLASV  161 (365)
T ss_pred             ------CCcEEEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHC---CCeeCCCCCcceEEEcCCCCEEEEECcccee
Confidence                  12699999999999974321 1234567899999999998   9999999 99999999999999999999997


Q ss_pred             cccccCCCC--CccccceeccccccccccccCCCC
Q 002376          792 LLERVDNQS--SISSTHVFMGSIGYVPPEYGLGER  824 (929)
Q Consensus       792 ~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~  824 (929)
                      +........  .....+...|++.|+|||++.-+.
T Consensus       162 ~~~~~~~~~~~~~~d~~~~~~~~~~~~pe~~~~~~  196 (365)
T PRK09188        162 FRRRGALYRIAAYEDLRHLLKHKRTYAPDALTPRE  196 (365)
T ss_pred             cccCcchhhhhhhhhhhhhhccCccCCcccCChhh
Confidence            753321111  011124567899999999987554

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=5.6e-21  Score=203.04  Aligned_cols=113  Identities=28%  Similarity=0.468  Sum_probs=93.6

Q ss_pred             hCCCCCceeecccCceeEEeccccCc---------------HHHHHHHHHHHHccC-----Cc---cccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS---------------WKSFIAECETLRNVR-----HR---NLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~~~E~~~l~~l~-----Hp---niv~l~~~~~~~~~  716 (929)
                      ..+|...++||-|.|++||.+++.+.               .+....||++|++++     |+   .||+++++|...+ 
T Consensus        77 ~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG-  155 (590)
T KOG1290|consen   77 GGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG-  155 (590)
T ss_pred             CceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC-
Confidence            35888999999999999999988632               345668999999983     43   5999999998766 


Q ss_pred             CCcceEEEEEEecCCCCccccccc----------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHG----------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~----------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                      .+..++|||+|+. |-+|..+|..          .+.++.||+.||.|||+.|  +|||-||||+|||+.
T Consensus       156 pNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ec--gIIHTDlKPENvLl~  222 (590)
T KOG1290|consen  156 PNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHREC--GIIHTDLKPENVLLC  222 (590)
T ss_pred             CCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhc--CccccCCCcceeeee
Confidence            4667899999999 6688888763          2345789999999999987  999999999999983

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.80  E-value=4.5e-21  Score=188.85  Aligned_cols=220  Identities=20%  Similarity=0.258  Sum_probs=164.9

Q ss_pred             ceeecccCceeEEeccccCc----------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEec
Q 002376          666 ENLIGSGSFGSVLHNERTGS----------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL  729 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~~----------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~  729 (929)
                      ..+|.+...|+.|+|++++.                .++|..|.-.++.+.||||.+++|.|.++     ....++..||
T Consensus       195 ~tkl~e~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsp-----pnlv~isq~m  269 (448)
T KOG0195|consen  195 ITKLAESHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSP-----PNLVIISQYM  269 (448)
T ss_pred             hhhhccCCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCC-----CCceEeeeec
Confidence            34688888999999999842                35788899999999999999999999543     4589999999


Q ss_pred             CCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe--ccccccccccccC
Q 002376          730 SNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG--DFGLARFLLERVD  797 (929)
Q Consensus       730 ~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~--DfGla~~~~~~~~  797 (929)
                      +.|+|+..+++..          +++++||+|++|||+. ++-|..--+.+..|+||++.+++|+  |--++-.      
T Consensus       270 p~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl-ep~ipr~~lns~hvmidedltarismad~kfsfq------  342 (448)
T KOG0195|consen  270 PFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL-EPMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ------  342 (448)
T ss_pred             cchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc-chhhhhhhcccceEEecchhhhheecccceeeee------
Confidence            9999999998543          4578999999999997 4344445688999999999998875  2222111      


Q ss_pred             CCCCccccceeccccccccccccCCCCC---CCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhhccChHHHHhhcccch
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERP---STAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQVLDPELRQLMTSNES  872 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~  872 (929)
                             .......+.||+||.++..+.   -.++|+|||.+.++|+.+.+.++..++. + -.++.-..++-.++    
T Consensus       343 -------e~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspmecgmkialeglrv~ip----  411 (448)
T KOG0195|consen  343 -------EVGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPMECGMKIALEGLRVHIP----  411 (448)
T ss_pred             -------ccccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchhhhhhhhhccccccCC----
Confidence                   112245789999999987763   4679999999999998888888877765 1 22222223332222    


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                            ..+..-+.+++.-|++.||.+||.++.|+-.||++.
T Consensus       412 ------pgis~hm~klm~icmnedpgkrpkfdmivpilekm~  447 (448)
T KOG0195|consen  412 ------PGISRHMNKLMNICMNEDPGKRPKFDMIVPILEKMI  447 (448)
T ss_pred             ------CCccHHHHHHHHHHhcCCCCcCCCcceehhhHHHhc
Confidence                  223333344777999999999999999999999874

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.78  E-value=4.9e-20  Score=196.55  Aligned_cols=171  Identities=26%  Similarity=0.319  Sum_probs=134.2

Q ss_pred             hCCCCCceeecccCceeEEeccccCc---------------HHHHHHHHHHHHccC------CccccceeeecccCCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS---------------WKSFIAECETLRNVR------HRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------~~~~~~E~~~l~~l~------Hpniv~l~~~~~~~~~~~  718 (929)
                      ..+|.+....|+|-|+.|.+|.+...               .+.=.+|+++|.++.      --++++++..|..     
T Consensus       431 D~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~h-----  505 (752)
T KOG0670|consen  431 DSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKH-----  505 (752)
T ss_pred             cceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhh-----
Confidence            35788888899999999999987622               123347999999994      3378999888854     


Q ss_pred             cceEEEEEEecCCCCcccccccc-----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE-----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~-----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~Df  786 (929)
                      ..++|||+|-.. -+|.+++++.           +.++.|+.-||..|...   +|+|.||||.|||+.+.- ..|||||
T Consensus       506 knHLClVFE~Ls-lNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c---~vlHaDIKPDNiLVNE~k~iLKLCDf  581 (752)
T KOG0670|consen  506 KNHLCLVFEPLS-LNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKC---GVLHADIKPDNILVNESKNILKLCDF  581 (752)
T ss_pred             cceeEEEehhhh-chHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhc---CeeecccCccceEeccCcceeeeccC
Confidence            345999999874 5888887632           34467889999999987   999999999999998765 6899999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      |.|....+.        ..+.+.-+..|.|||++.|.+|+...|+||.||.+||+.++...
T Consensus       582 GSA~~~~en--------eitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIl  634 (752)
T KOG0670|consen  582 GSASFASEN--------EITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKIL  634 (752)
T ss_pred             ccccccccc--------cccHHHHHHhccCcceeecCcccCCccceeeceeeEEeecccee
Confidence            998765321        11122346679999999999999999999999999998665543

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.78  E-value=1.2e-19  Score=189.27  Aligned_cols=168  Identities=32%  Similarity=0.455  Sum_probs=137.2

Q ss_pred             CCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      |+..+.||+|++|.||++....                 ..+.+.+|++.+++++|+|++++++++...     ...++|
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~-----~~~~~v   75 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDP-----EPLYLV   75 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecC-----CceEEE
Confidence            4567899999999999987642                 356788999999999999999999998543     347999


Q ss_pred             EEecCCCCcccccccccc---------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~~---------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      +||+++++|.+++...+.         ...+++.++.|||+.   +++|+|++|+||+++.++.++|+|||.+.......
T Consensus        76 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~  152 (225)
T smart00221       76 MEYCEGGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSL---GIVHRDLKPENILLGMDGLVKLADFGLARFIHRDL  152 (225)
T ss_pred             EeccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcc
Confidence            999999999999875432         256789999999998   99999999999999999999999999998764321


Q ss_pred             CCCCCccccceecccccccccccc-CCCCCCCCCCCCCCcCCCCCcch
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYG-LGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                           ........++..|++||.. ....++.++|||++|++++++..
T Consensus       153 -----~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~  195 (225)
T smart00221      153 -----AALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLW  195 (225)
T ss_pred             -----cccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHH
Confidence                 0012335678899999998 66678889999999976666443

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=4.2e-20  Score=204.22  Aligned_cols=160  Identities=24%  Similarity=0.352  Sum_probs=72.0

Q ss_pred             CCCCEEEecCCcCCCC----CcccccCCCCCceecccCcccccc----cCcccccccccceecccCCcCCCCCCCCcccC
Q 002376          401 QGLQVLGLAGNEIPGG----IPNSLANLKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRP  472 (929)
Q Consensus       401 ~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~  472 (929)
                      ++|+.|++++|.+++.    ++..+..+++|++|++++|.+++.    ++..+..+++|+.|++++|.+++.-    ...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~----~~~  212 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEG----ASA  212 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHH----HHH
Confidence            4455555555554421    222344444555555555555421    1222333345555555555554211    011


Q ss_pred             CchhhhcccCccEEEecCCCCCCCCCcchhc-----CcCcceeeccccccc----ccCCccccCCCCCCEEECCCCcCCC
Q 002376          473 LPEEISRLENVVTIDLSDNSLSGNLPNSLKN-----CKSLEELLMAYNQFS----GPIPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       473 ~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      ++..+..+++|++||+++|.+++.....+..     .+.|+.|++++|.++    ..+...+..+++|+++|+++|.++.
T Consensus       213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            1223334455555555555555322222211     245566666666554    1223334444566666666666653


Q ss_pred             c----CCcccccC-CCCCeEeCCCCc
Q 002376          544 S----IPSDLQNL-QALRSLNLTFNN  564 (929)
Q Consensus       544 ~----~p~~~~~l-~~L~~L~Ls~N~  564 (929)
                      .    ....+... +.|+++++.+|.
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         293 EGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHHHHHHHHhhcCCchhhcccCCCC
Confidence            3    22222223 455555555554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.75  E-value=2.2e-19  Score=180.00  Aligned_cols=161  Identities=18%  Similarity=0.106  Sum_probs=108.0

Q ss_pred             CCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCc
Q 002376          732 GSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI  802 (929)
Q Consensus       732 gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~  802 (929)
                      |+|.++++..         ..++.||+.||+|||+.   +      ||+||++++++.+|+  ||+++.....       
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~------kp~Nil~~~~~~~~~--fG~~~~~~~~-------   62 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQ---A------KSGNILLTWDGLLKL--DGSVAFKTPE-------   62 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhc---C------CcccEeEcCccceee--ccceEeeccc-------
Confidence            5667766532         23467999999999997   4      999999999999999  9999865321       


Q ss_pred             cccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHH
Q 002376          803 SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLI  882 (929)
Q Consensus       803 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  882 (929)
                          ...||+.|||||++.+..++.++||||+|+++|++..+..++..... ....+..............+ .......
T Consensus        63 ----~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~  136 (176)
T smart00750       63 ----QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE-LSAILEILLNGMPADDPRDR-SNLESVS  136 (176)
T ss_pred             ----cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch-hcHHHHHHHHHhccCCcccc-ccHHHHH
Confidence                12589999999999999999999999999888887655544322111 11111111111111100000 0111122


Q ss_pred             H--HHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          883 T--IIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       883 ~--~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .  -+++++.+||+.+|++||++.|+++.+..+...
T Consensus       137 ~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~~~  172 (176)
T smart00750      137 AARSFADFMRVCASRLPQRREAANHYLAHCRALFAE  172 (176)
T ss_pred             hhhhHHHHHHHHHhcccccccCHHHHHHHHHHHHHH
Confidence            2  234488899999999999999999988776544

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=1.6e-19  Score=199.55  Aligned_cols=209  Identities=23%  Similarity=0.304  Sum_probs=121.6

Q ss_pred             CCCCCCCEEEccCCccccccCchhhhccc--cccEEEecCCcccc----ccCCCCCCC-CcccEEEeeCCCCCcc----c
Q 002376          325 TNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYG----KIPASIGRL-RSLTLLDLSYNSISGE----I  393 (929)
Q Consensus       325 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~L~~L~Ls~N~l~~----~~p~~~~~l-~~L~~L~Ls~N~l~~~----~  393 (929)
                      ..+++|+.|++++|.+.+..+..+..+..  +|++|++++|++.+    .+...+..+ ++|+.|+|++|.+++.    +
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            34455555555555555444444443331  26666666665552    222333444 6667777777766632    2


Q ss_pred             CccccCCCCCCEEEecCCcCCCC----CcccccCCCCCceecccCcccccc----cCcccccccccceecccCCcCCCCC
Q 002376          394 PIEIGQLQGLQVLGLAGNEIPGG----IPNSLANLKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNI  465 (929)
Q Consensus       394 p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~i  465 (929)
                      +..+..+++|++|++++|.+++.    ++..+..+++|++|+|++|.+++.    ++..+..+++|++|++++|.+++..
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~  237 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG  237 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHH
Confidence            33455556677777777776632    233344556777777777776533    2334556677777777777776421


Q ss_pred             CCCcccCCchhhh-----cccCccEEEecCCCCCC----CCCcchhcCcCcceeeccccccccc----CCccccCC-CCC
Q 002376          466 PKGILRPLPEEIS-----RLENVVTIDLSDNSLSG----NLPNSLKNCKSLEELLMAYNQFSGP----IPNIVAEL-KGL  531 (929)
Q Consensus       466 ~~~~~~~~p~~~~-----~l~~L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l-~~L  531 (929)
                              ...+.     ..+.|+.|++++|.++.    .+...+..+++|+++++++|.++..    ....+... +.|
T Consensus       238 --------~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~  309 (319)
T cd00116         238 --------AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNEL  309 (319)
T ss_pred             --------HHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCch
Confidence                    11111     13577888888887762    2334555667888888888888744    34444445 678


Q ss_pred             CEEECCCCcC
Q 002376          532 EVLDLSSNKL  541 (929)
Q Consensus       532 ~~L~Ls~N~l  541 (929)
                      +.||+.+|.+
T Consensus       310 ~~~~~~~~~~  319 (319)
T cd00116         310 ESLWVKDDSF  319 (319)
T ss_pred             hhcccCCCCC
Confidence            8888888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=1.3e-19  Score=167.05  Aligned_cols=178  Identities=32%  Similarity=0.540  Sum_probs=120.8

Q ss_pred             CCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccccccee
Q 002376          375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI  454 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  454 (929)
                      ++++.+.|.||+|+++ .+|..+..+.+|++|++++|+|. .+|..+..+++|+.|+++-|++. ..|..|+.++.|++|
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl  107 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL  107 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence            4556666777777776 55666777777777777777776 56677777777777777777776 677788888888888


Q ss_pred             cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEE
Q 002376          455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL  534 (929)
Q Consensus       455 ~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  534 (929)
                      ||.+|+++..                               .+|..|..+..|+.|+|+.|.+. .+|..++.+++|+.|
T Consensus       108 dltynnl~e~-------------------------------~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil  155 (264)
T KOG0617|consen  108 DLTYNNLNEN-------------------------------SLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQIL  155 (264)
T ss_pred             hccccccccc-------------------------------cCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEE
Confidence            8887776521                               34555556666666666666666 556666777777777


Q ss_pred             ECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCC---CCCCcccccCCCC
Q 002376          535 DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIF---RNMSNVHLKGNPK  588 (929)
Q Consensus       535 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~l~~l~l~~N~~  588 (929)
                      .+..|.+- ..|..++.+++|+.|.+.+|+++-.+|+.+.+   .+-+......|||
T Consensus       156 ~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  156 SLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPW  211 (264)
T ss_pred             eeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCC
Confidence            77777665 46777777777777777777777666654432   2224456677776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.72  E-value=1.8e-19  Score=166.10  Aligned_cols=165  Identities=32%  Similarity=0.496  Sum_probs=84.9

Q ss_pred             CCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCC
Q 002376           91 IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL  170 (929)
Q Consensus        91 l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L  170 (929)
                      +.++++.+.|-||+|+++ .+|+.+..|.+|+.|++++|+|. ..|.+++.+++|+.|+++-|++. .+|.+ |+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprg-fgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRG-FGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccc-cCCCchh
Confidence            344555555566666655 55555555555555555555555 45555555555555555555554 33333 5555555


Q ss_pred             cEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCC
Q 002376          171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPN  250 (929)
Q Consensus       171 ~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  250 (929)
                      ++|||.+|++..                               ...|+.|+.|+.|+-|+|++|.+. .+|.++.. +.+
T Consensus       105 evldltynnl~e-------------------------------~~lpgnff~m~tlralyl~dndfe-~lp~dvg~-lt~  151 (264)
T KOG0617|consen  105 EVLDLTYNNLNE-------------------------------NSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGK-LTN  151 (264)
T ss_pred             hhhhcccccccc-------------------------------ccCCcchhHHHHHHHHHhcCCCcc-cCChhhhh-hcc
Confidence            555555444422                               234555555555555555555554 34444433 344


Q ss_pred             cceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCC
Q 002376          251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLG  294 (929)
Q Consensus       251 L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  294 (929)
                      |+.|.+..|.+- .+|..++.++.|+.|.+.+|+++ .+|+.++
T Consensus       152 lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~  193 (264)
T KOG0617|consen  152 LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA  193 (264)
T ss_pred             eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence            444444333332 34555555566666666666665 3443333

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=4.2e-18  Score=199.00  Aligned_cols=232  Identities=20%  Similarity=0.197  Sum_probs=155.3

Q ss_pred             CceeecccCceeEEeccccCc-----HH-----------------HHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          665 HENLIGSGSFGSVLHNERTGS-----WK-----------------SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       665 ~~~~iG~G~~g~Vy~~~~~~~-----~~-----------------~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ..+++|.|++|.|+.......     .+                 .+..|..+-..++|||++..+..+.+...     .
T Consensus       322 ~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~-----~  396 (601)
T KOG0590|consen  322 PGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDG-----I  396 (601)
T ss_pred             ccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhccc-----c
Confidence            457899999996654332211     11                 13345555666899999988887765432     3


Q ss_pred             EEEEEecCCCCcccccccc-c-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE-R-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~-~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +-+||||++ +|+..+... +       ....|+..|++|+|+.   +|.|||+|++|++++.+|.+||+|||.+....-
T Consensus       397 ~~~mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~---GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~  472 (601)
T KOG0590|consen  397 LQSMEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSM---GLAHRDLKLENLLVTENGILKIIDFGAASVFRY  472 (601)
T ss_pred             hhhhhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhc---CceeccCccccEEEecCCceEEeecCcceeecc
Confidence            344999999 999888653 1       2357899999999998   999999999999999999999999999876532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...  ........++|+..|+|||++.+..| ....||||.|++...|.+...+|......-.+..+........ ....
T Consensus       473 ~~e--~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~~~~~~~~~~~~-~~~~  549 (601)
T KOG0590|consen  473 PWE--KNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNSFKTNNYSDQRN-IFEG  549 (601)
T ss_pred             Ccc--hhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccchhhhccccccc-cccC
Confidence            211  11233456789999999999999888 4668999999887776666555543322100000000000000 0111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......++.-.+.++.+++++||.+|.||++|++
T Consensus       550 ~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~  584 (601)
T KOG0590|consen  550 PNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILN  584 (601)
T ss_pred             hHHHHHhchhhHHHHHHHHccCChhheecHHHHhh
Confidence            11122334444455777999999999999999985

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.71  E-value=7.5e-18  Score=171.23  Aligned_cols=157  Identities=13%  Similarity=0.124  Sum_probs=119.8

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------cHH---------HHHHHHHHHHccCCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------SWK---------SFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~---------~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+++|+|+||.||......              ..+         .|.+|++.+.+++||+|..+..++...+.
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~~  109 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAER  109 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeeccc
Confidence            5789999999999999999865421              111         26799999999999999999888654321


Q ss_pred             C---CcceEEEEEEecCCCCccccccccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          717 K---NMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       717 ~---~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .   .....++||||++|.+|.++.........+++.+++.+|+.   +++|||+||+||++++++ ++++|||..+...
T Consensus       110 ~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~---gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~  185 (232)
T PRK10359        110 KTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQH---GMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTA  185 (232)
T ss_pred             ccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHc---CCccCCCChHHEEEeCCC-EEEEECCCccccc
Confidence            1   12347999999999999887543333456899999999998   999999999999999998 9999999887542


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCC
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFA  838 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~  838 (929)
                      +.     ...             ..+.....|..++|+|++|++.
T Consensus       186 e~-----~a~-------------d~~vler~y~~~~di~~lg~~~  212 (232)
T PRK10359        186 QR-----KAK-------------DRIDLERHYGIKNEIKDLGYYL  212 (232)
T ss_pred             ch-----hhH-------------HHHHHHhHhcccccccceeEee
Confidence            11     000             1144455677899999999754

>PLN03150 hypothetical protein; Provisional

Probab=99.68  E-value=1.1e-16  Score=190.01  Aligned_cols=151  Identities=34%  Similarity=0.606  Sum_probs=126.4

Q ss_pred             CcCChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC-----CCcceeeCC--CC--CcEEEEEcCCCCCccccCCCCCC
Q 002376           23 SVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPC-----TWPGVICNN--FG--NRVIGLNLSSFGLEGTISPHIGN   93 (929)
Q Consensus        23 ~~~~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~~c-----~w~gv~c~~--~~--~~v~~l~l~~~~l~g~i~~~l~~   93 (929)
                      ..+.++|.+||++||+++..  +..  .+|+.  ++|     .|.||.|+.  ..  .+|+.|+|+++++.|.+|+.++.
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~--~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~  440 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGL--PLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISK  440 (623)
T ss_pred             cccCchHHHHHHHHHHhcCC--ccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhC
Confidence            34567899999999999853  222  48973  344     799999953  22  25899999999999999999999


Q ss_pred             CCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhcc-CCCCcE
Q 002376           94 LSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRN-LRSLQV  172 (929)
Q Consensus        94 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~-l~~L~~  172 (929)
                      |++|+.|+|++|++.|.+|..++.+++|+.|||++|+++|.+|..++++++|++|+|++|+++|.+|.. ++. +.++..
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~  519 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRAS  519 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH-HhhccccCce
Confidence            999999999999999999999999999999999999999999999999999999999999999988877 554 356677


Q ss_pred             EEcccccc
Q 002376          173 LNFGKNLL  180 (929)
Q Consensus       173 L~Ls~N~l  180 (929)
                      +++++|..
T Consensus       520 l~~~~N~~  527 (623)
T PLN03150        520 FNFTDNAG  527 (623)
T ss_pred             EEecCCcc
Confidence            77777754

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.67  E-value=1.8e-16  Score=174.57  Aligned_cols=241  Identities=18%  Similarity=0.252  Sum_probs=160.3

Q ss_pred             CCCCceeecccCceeEEeccccCc-----------------HHHHHHHHHHHHccCC----ccccceeeecccCCCCCcc
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGS-----------------WKSFIAECETLRNVRH----RNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~-----------------~~~~~~E~~~l~~l~H----pniv~l~~~~~~~~~~~~~  720 (929)
                      +|...+.||+|+||.||++.....                 ...+..|+.++..+..    +++.++++...    ....
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~----~~~~   94 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGR----STED   94 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEecc----CCCc
Confidence            799999999999999999875421                 1157789999999873    57777777763    1234


Q ss_pred             eEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-----CceEEec
Q 002376          721 FLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-----MTAKVGD  785 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-----~~~ki~D  785 (929)
                      +.|+||+.+ |.+|.++.+...          .++.|+..||+++|+.   +++||||||.|+++...     ..+.+.|
T Consensus        95 ~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHRDiKp~N~~~g~~~~~~~~~~~llD  170 (322)
T KOG1164|consen   95 FNFIVMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSK---GFIHRDIKPENFVVGQSSRSEVRTLYLLD  170 (322)
T ss_pred             eeEEEEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhc---CcccCCcCHHHeeecCCCCcccceEEEEe
Confidence            579999988 779988764221          2367899999999998   99999999999999754     4689999


Q ss_pred             cccccccc--cccCC--CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc--
Q 002376          786 FGLARFLL--ERVDN--QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL--  859 (929)
Q Consensus       786 fGla~~~~--~~~~~--~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~--  859 (929)
                      ||+|+...  .....  .........+.||..|+++..-.+...+.+.|+||+.     ..+.++..+.+|....+..  
T Consensus       171 fGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~-----Y~l~el~~g~LPW~~~~~~~~  245 (322)
T KOG1164|consen  171 FGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLF-----YMLLELLKGSLPWEALEMTDL  245 (322)
T ss_pred             cCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHH-----HHHHHHhcCCCCCccccccch
Confidence            99998332  11111  1111112346799999999999999999999999966     3344555454554111111  


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ...+...........  ...+.+....++...+-..+..++|....+...+++.....
T Consensus       246 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Pdy~~~~~~l~~~~~~~  301 (322)
T KOG1164|consen  246 KSKFEKDPRKLLTDR--FGDLKPEEFAKILEYIDSLDYEDKPDYEKLAELLKDVFDSE  301 (322)
T ss_pred             HHHHHHHhhhhcccc--ccCCChHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHhc
Confidence            111111100000000  00111112222445666689999999999999988876654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.65  E-value=1.6e-16  Score=157.73  Aligned_cols=117  Identities=23%  Similarity=0.208  Sum_probs=95.1

Q ss_pred             CCceeecccCceeEEeccccCc------------------HHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEE
Q 002376          664 SHENLIGSGSFGSVLHNERTGS------------------WKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~~------------------~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .....|++|+||+||.+...+.                  ...|.+|+++|++++ |+++.+++++.     .    .++
T Consensus         5 ~~~~~l~~~~f~~v~~~~~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~-----~----~~l   75 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRGGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWD-----G----RHL   75 (218)
T ss_pred             ccceeecCCCcceEEEeecCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEc-----C----EEE
Confidence            3457899999999997655411                  125789999999995 58899998863     1    599


Q ss_pred             EEEecCCCCccccccc-cccccccHHHHHHHhhhCCCCCEEecCC-CCCCeeecCCCceEEecccccccc
Q 002376          725 VYEFLSNGSLGDWIHG-ERKNELDITSALDYLHNDCEVPVVHSDL-KPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~-~~~~~~~ia~aL~yLH~~~~~~iiHrDl-k~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ||||++|.+|.+.+.. ......+++.+++|+|+.   +|+|||| ||+|||++.++.++|+|||+|...
T Consensus        76 vmeyI~G~~L~~~~~~~~~~~~~qi~~~L~~lH~~---GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~  142 (218)
T PRK12274         76 DRSYLAGAAMYQRPPRGDLAYFRAARRLLQQLHRC---GVAHNDLAKEANWLVQEDGSPAVIDFQLAVRG  142 (218)
T ss_pred             EEeeecCccHHhhhhhhhHHHHHHHHHHHHHHHHC---cCccCCCCCcceEEEcCCCCEEEEECCCceec
Confidence            9999999999766532 223467889999999998   9999999 799999999999999999999854

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=3.6e-17  Score=169.83  Aligned_cols=198  Identities=22%  Similarity=0.165  Sum_probs=125.8

Q ss_pred             CCccccceeeecccCCC----------------------CCcceEEEEEEecCCCCcccccccc-------ccccccHHH
Q 002376          700 RHRNLVKLITSCSSLDS----------------------KNMEFLALVYEFLSNGSLGDWIHGE-------RKNELDITS  750 (929)
Q Consensus       700 ~Hpniv~l~~~~~~~~~----------------------~~~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~  750 (929)
                      +|||||++.++|.+.-.                      ......|+||.-.+ -+|.+++..+       +.+..|+.+
T Consensus       274 ~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~-~tLr~yl~~~~~s~r~~~~~laQlLE  352 (598)
T KOG4158|consen  274 KHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYR-QTLREYLWTRHRSYRTGRVILAQLLE  352 (598)
T ss_pred             CCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcch-hhHHHHHhcCCCchHHHHHHHHHHHH
Confidence            69999999998876421                      11234788888775 4788877532       233678999


Q ss_pred             HHHHhhhCCCCCEEecCCCCCCeee--cCCC--ceEEeccccccccccccCCCCCccccceeccccccccccccCCCC--
Q 002376          751 ALDYLHNDCEVPVVHSDLKPGNILL--DEEM--TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--  824 (929)
Q Consensus       751 aL~yLH~~~~~~iiHrDlk~~NILl--~~~~--~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--  824 (929)
                      |+.|||.+   +|.|||+|+.|||+  |+|+  ...|+|||++-.-....-.-...+..-..-|...-||||+....+  
T Consensus       353 av~hL~~h---gvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp  429 (598)
T KOG4158|consen  353 AVTHLHKH---GVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGP  429 (598)
T ss_pred             HHHHHHHc---cchhhcccccceEEEecCCCCcEEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCC
Confidence            99999998   99999999999999  4555  578999998753211000001111111224677899999876432  


Q ss_pred             ----CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCC
Q 002376          825 ----PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGR  900 (929)
Q Consensus       825 ----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  900 (929)
                          -..|+|.|+.|.++||+....-++..-.   ....+.+-.+     +.+-+..++....++++++...+++||++|
T Consensus       430 ~avvny~kAD~WA~GalaYEIfg~~NPFY~rG---em~L~~r~Yq-----e~qLPalp~~vpp~~rqlV~~lL~r~pskR  501 (598)
T KOG4158|consen  430 NAVVNYEKADTWAAGALAYEIFGRSNPFYKRG---EMLLDTRTYQ-----ESQLPALPSRVPPVARQLVFDLLKRDPSKR  501 (598)
T ss_pred             ceeeccchhhhhhhhhhHHHHhccCCcccccc---hheechhhhh-----hhhCCCCcccCChHHHHHHHHHhcCCcccc
Confidence                3578999999998888533222222111   1112222111     122223344455667778889999999999


Q ss_pred             CCHHHHHHH
Q 002376          901 IGIREALRR  909 (929)
Q Consensus       901 Ps~~ev~~~  909 (929)
                      |+..-+...
T Consensus       502 vsp~iAANv  510 (598)
T KOG4158|consen  502 VSPNIAANV  510 (598)
T ss_pred             CCccHHHhH
Confidence            986654443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.63  E-value=3e-16  Score=173.66  Aligned_cols=234  Identities=26%  Similarity=0.346  Sum_probs=159.3

Q ss_pred             CCCceeecccCceeEEecccc--------------C--cHHHHHHHHHHHHccCCc-cccceeeecccCCCCCcceEEEE
Q 002376          663 FSHENLIGSGSFGSVLHNERT--------------G--SWKSFIAECETLRNVRHR-NLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~--------------~--~~~~~~~E~~~l~~l~Hp-niv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      |...+.||.|+||.||++...              .  ..+.|.+|+.+++.+.|+ +++++.+++....     ..+++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~   76 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEG-----SLYLV   76 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEeccEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCC-----EEEEE
Confidence            566788999999999998765              1  256789999999999988 7999999984322     27999


Q ss_pred             EEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEeccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLL  793 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~  793 (929)
                      +||+.++++.+++....           .+..+++.+++|+|+.   +++|||+||+||+++..+ .+|++|||.++...
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~  153 (384)
T COG0515          77 MEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSK---GIIHRDIKPENILLDRDGRVVKLIDFGLAKLLP  153 (384)
T ss_pred             EecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeecCCCCeEEEeccCcceecC
Confidence            99999999997765432           2256889999999998   899999999999999988 79999999998553


Q ss_pred             cccCCCCCccccceeccccccccccccCC---CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc--cChHHHHhhc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG---ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV--LDPELRQLMT  868 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~  868 (929)
                      ................||..|+|||.+.+   ..++...|+|++|+..++     ...+..|......  ..........
T Consensus       154 ~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~~  228 (384)
T COG0515         154 DPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGITLYE-----LLTGLPPFEGEKNSSATSQTLKIIL  228 (384)
T ss_pred             CCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHHHHHHH-----HHhCCCCCCCCCccccHHHHHHHHH
Confidence            32111100012345689999999999988   578999999999854444     2333322110000  0011111111


Q ss_pred             ccchh--hhhhhHH----HHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          869 SNESQ--TIQLHDC----LITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       869 ~~~~~--~~~~~~~----~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      .....  .......    ....+.++..+|+..+|..|.++.+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  275 (384)
T COG0515         229 ELPTPSLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSH  275 (384)
T ss_pred             hcCCcccccccCccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhc
Confidence            11100  0000000    01233347779999999999998887664

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.63  E-value=1.1e-16  Score=178.18  Aligned_cols=204  Identities=24%  Similarity=0.303  Sum_probs=142.5

Q ss_pred             HHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCE-Ee
Q 002376          696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPV-VH  765 (929)
Q Consensus       696 l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~i-iH  765 (929)
                      |+.+.|.|+.+++|.+...     ...+.|.+||+.|+|.|.+....         ....+|+.||+|+|+-   +| .|
T Consensus         1 l~~l~h~n~~~f~g~~~~~-----~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s---~i~~h   72 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDG-----PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNS---PIGYH   72 (484)
T ss_pred             CcccchhhhhhheeeEecC-----CceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcC---cceee
Confidence            4578999999999999765     34899999999999999987422         1256899999999986   44 99


Q ss_pred             cCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCC-------CCCCCCCCCCcCCC
Q 002376          766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-------PSTAGDVPTSESFA  838 (929)
Q Consensus       766 rDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-------~~~~~DV~s~g~~~  838 (929)
                      +.++++|.++|..+.+|++|||+.........    ........-..-|.|||.+++..       .+.++||||+|+++
T Consensus        73 g~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~----~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~  148 (484)
T KOG1023|consen   73 GALKSSNCLVDSRWVLKLTDFGLNSLLEETAE----PEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIM  148 (484)
T ss_pred             eeeccccceeeeeEEEEechhhhccccccccc----ccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHH
Confidence            99999999999999999999999887642100    01111122355699999988742       47789999999988


Q ss_pred             CCcchhHHhhhcCCc--hhhhccChHHHHhhcccchhhhhhh---HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          839 GEFNIVKWVESNLPE--NVLQVLDPELRQLMTSNESQTIQLH---DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       839 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      +|+....-++.....  ...+++.. +..  ......++...   +....++. ++.+||..+|++||+++.|-..++.+
T Consensus       149 ~ei~~r~~~~~~~~~~~~~~eii~~-~~~--~~~~~~rP~i~~~~e~~~~l~~-l~~~cw~e~P~~rPs~~~i~~~~~~~  224 (484)
T KOG1023|consen  149 YEILFRSGPFDLRNLVEDPDEIILR-VKK--GGSNPFRPSIELLNELPPELLL-LVARCWEEIPEKRPSIEQIRSKLLTI  224 (484)
T ss_pred             HHHHhccCccccccccCChHHHHHH-HHh--cCCCCcCcchhhhhhcchHHHH-HHHHhcccChhhCccHHHHHhhhhhh
Confidence            887666655544332  11222222 111  01111122111   12223455 78899999999999999998888776


Q ss_pred             HH
Q 002376          914 QE  915 (929)
Q Consensus       914 ~~  915 (929)
                      ..
T Consensus       225 ~~  226 (484)
T KOG1023|consen  225 NK  226 (484)
T ss_pred             cc
Confidence            54

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.61  E-value=4.5e-16  Score=183.19  Aligned_cols=132  Identities=20%  Similarity=0.293  Sum_probs=107.3

Q ss_pred             ChHHHHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceee
Q 002376          652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLIT  709 (929)
Q Consensus       652 ~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~  709 (929)
                      ++.........|...+.||+|+||.||+|.+.+                      ..+++.+|++++++++|++++....
T Consensus       324 ~~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~  403 (535)
T PRK09605        324 TWIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVI  403 (535)
T ss_pred             eeccccccccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEE
Confidence            333334445556778999999999999965431                      0235788999999999999988777


Q ss_pred             ecccCCCCCcceEEEEEEecCCCCccccccccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       710 ~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ++...+     ..++||||+++++|.+++.....++.+++++++|||+.   +++|||+||+|||+ +++.++|+|||++
T Consensus       404 ~~~~~~-----~~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~---giiHrDlkp~NILl-~~~~~~liDFGla  474 (535)
T PRK09605        404 YDVDPE-----EKTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKA---GIVHGDLTTSNFIV-RDDRLYLIDFGLG  474 (535)
T ss_pred             EEEeCC-----CCEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhC---CCccCCCChHHEEE-ECCcEEEEeCccc
Confidence            665432     25899999999999999876667788999999999998   99999999999999 5779999999999


Q ss_pred             ccc
Q 002376          790 RFL  792 (929)
Q Consensus       790 ~~~  792 (929)
                      +..
T Consensus       475 ~~~  477 (535)
T PRK09605        475 KYS  477 (535)
T ss_pred             ccC
Confidence            854

>PRK10345 hypothetical protein; Provisional

Probab=99.60  E-value=2e-15  Score=153.46  Aligned_cols=122  Identities=18%  Similarity=0.249  Sum_probs=92.7

Q ss_pred             CCCceeecccCceeEEecccc-------------CcHHHHHHHHHHHHcc-----CCccccceeeecccCCCCCcce-EE
Q 002376          663 FSHENLIGSGSFGSVLHNERT-------------GSWKSFIAECETLRNV-----RHRNLVKLITSCSSLDSKNMEF-LA  723 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~-------------~~~~~~~~E~~~l~~l-----~Hpniv~l~~~~~~~~~~~~~~-~~  723 (929)
                      ++..+.||+|+||.||.-...             ...+.+.+|+.+++.+     .||||++++|++.+..  +.+. +.
T Consensus         4 L~~~~~LG~G~~~~Vy~hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~--g~g~v~~   81 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDC--GTGYVYD   81 (210)
T ss_pred             cCCcceecCCCceEEEECCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCC--CCeEEEE
Confidence            345678999999999962211             1356789999999999     5799999999986543  2234 34


Q ss_pred             EEEEe--cCCCCcccccccccc-----ccccHHHHH-HHhhhCCCCCEEecCCCCCCeeecC----CCceEEeccccc
Q 002376          724 LVYEF--LSNGSLGDWIHGERK-----NELDITSAL-DYLHNDCEVPVVHSDLKPGNILLDE----EMTAKVGDFGLA  789 (929)
Q Consensus       724 lV~e~--~~~gsL~~~l~~~~~-----~~~~ia~aL-~yLH~~~~~~iiHrDlk~~NILl~~----~~~~ki~DfGla  789 (929)
                      +|+||  +++|+|.+++.+.+.     ...+++.++ +|||+.   +|+||||||+|||++.    ++.++|+||+-+
T Consensus        82 ~I~e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~---~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345         82 VIADFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDN---RIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             EEecCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHC---CEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            89999  558999999964321     235667677 999998   9999999999999974    348999995444

>PLN03150 hypothetical protein; Provisional

Probab=99.55  E-value=1e-14  Score=173.38  Aligned_cols=115  Identities=33%  Similarity=0.533  Sum_probs=100.9

Q ss_pred             CccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCC
Q 002376          482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT  561 (929)
Q Consensus       482 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  561 (929)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+|+|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCcccCCCCC--CCCCCCcccccCCCCCcCCC---CCC
Q 002376          562 FNNLEGVVPSEG--IFRNMSNVHLKGNPKLCLQL---GCE  596 (929)
Q Consensus       562 ~N~l~~~~p~~~--~~~~l~~l~l~~N~~~c~~~---~c~  596 (929)
                      +|+++|.+|..-  .+.++..+++.+|+.+|+.+   .|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999998752  23455678899999999875   575

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.55  E-value=4.2e-15  Score=149.82  Aligned_cols=116  Identities=19%  Similarity=0.188  Sum_probs=84.4

Q ss_pred             ceeecccCceeEEeccccC-----------c-------------HHHH-----------------HHHHHHHHccCCccc
Q 002376          666 ENLIGSGSFGSVLHNERTG-----------S-------------WKSF-----------------IAECETLRNVRHRNL  704 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~-----------~-------------~~~~-----------------~~E~~~l~~l~Hpni  704 (929)
                      ...||+|+||.||+|....           .             ...|                 .+|++.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            3579999999999997641           0             0122                 239999999988876


Q ss_pred             cceeeecccCCCCCcceEEEEEEecCCCCcccc-ccc-------cccccccHHHHHHHh-hhCCCCCEEecCCCCCCeee
Q 002376          705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW-IHG-------ERKNELDITSALDYL-HNDCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       705 v~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~-l~~-------~~~~~~~ia~aL~yL-H~~~~~~iiHrDlk~~NILl  775 (929)
                      .....+..  .     ..++||||++++++... +..       ...++.|++.||+|+ |+.   +|+||||||+||++
T Consensus        82 ~~p~~~~~--~-----~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~---giiHrDlkP~NIli  151 (190)
T cd05147          82 PCPEPILL--K-----SHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDC---RLVHADLSEYNLLY  151 (190)
T ss_pred             CCCcEEEe--c-----CCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEE
Confidence            43332211  1     13899999998877544 222       123367899999999 576   89999999999999


Q ss_pred             cCCCceEEecccccccc
Q 002376          776 DEEMTAKVGDFGLARFL  792 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~  792 (929)
                      + ++.++++|||+|...
T Consensus       152 ~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         152 H-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             E-CCcEEEEEccccccC
Confidence            8 478999999999743

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.54  E-value=5.8e-16  Score=171.73  Aligned_cols=161  Identities=27%  Similarity=0.240  Sum_probs=126.5

Q ss_pred             ecccCceeEEecccc---------------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEE
Q 002376          669 IGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +|+|+||+|+.++..                     +.......|..++..++ ||.+|++...+..     ....++++
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt-----~~kl~l~l   76 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQT-----DGKLYLIL   76 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeecc-----ccchhHhh
Confidence            688999998654321                     11224556888899997 9999999887744     33489999


Q ss_pred             EecCCCCccccccccccc--------cccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGERKN--------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~~~--------~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      +|..+|++...+......        ...++-|++++|..   +|+|||+|++||+++.+|.+|+.|||+++..-+.   
T Consensus        77 d~~rgg~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l---~iiyrd~k~enilld~~Ghi~~tdfglske~v~~---  150 (612)
T KOG0603|consen   77 DFLRGGDLFTRLSKEVMFDELDVAFYLAELALALDHLHKL---GIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKE---  150 (612)
T ss_pred             hhcccchhhhccccCCchHHHHHHHHHHHHHHHHhhcchh---HHHHhcccccceeecccCccccCCchhhhHhHhh---
Confidence            999999999888755433        34678899999998   9999999999999999999999999999865321   


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVES  849 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~  849 (929)
                             ...+||..|||||++.  .....+|-||+|+.++++.+...++.
T Consensus       151 -------~~~cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~  192 (612)
T KOG0603|consen  151 -------KIACGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFG  192 (612)
T ss_pred             -------hhcccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCc
Confidence                   1128999999999987  57788999999988887665544443

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.54  E-value=1.1e-14  Score=147.57  Aligned_cols=116  Identities=20%  Similarity=0.172  Sum_probs=87.8

Q ss_pred             ceeecccCceeEEecccc-C----------c------------------------------HHHHHHHHHHHHccCCccc
Q 002376          666 ENLIGSGSFGSVLHNERT-G----------S------------------------------WKSFIAECETLRNVRHRNL  704 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~-~----------~------------------------------~~~~~~E~~~l~~l~Hpni  704 (929)
                      ...||+|+||.||+|... +          .                              ...+.+|.+.+.++.|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            367999999999998764 0          0                              0113578899999999987


Q ss_pred             cceeeecccCCCCCcceEEEEEEecCCCCcccc-ccc-------cccccccHHHHHHHhhh-CCCCCEEecCCCCCCeee
Q 002376          705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW-IHG-------ERKNELDITSALDYLHN-DCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       705 v~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~-l~~-------~~~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl  775 (929)
                      .....+...       ..++||||++++++... +..       ...++.+++.|+.|+|+ .   +|+||||||+||++
T Consensus        82 ~~p~~~~~~-------~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~---givHrDlkP~NIll  151 (190)
T cd05145          82 PVPEPILLK-------KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEA---GLVHGDLSEYNILY  151 (190)
T ss_pred             CCceEEEec-------CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhC---CEecCCCChhhEEE
Confidence            544443321       13899999998755332 322       12346789999999999 7   99999999999999


Q ss_pred             cCCCceEEecccccccc
Q 002376          776 DEEMTAKVGDFGLARFL  792 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~  792 (929)
                      + ++.++|+|||+|+.+
T Consensus       152 ~-~~~~~liDFG~a~~~  167 (190)
T cd05145         152 H-DGKPYIIDVSQAVEL  167 (190)
T ss_pred             E-CCCEEEEEcccceec
Confidence            9 789999999999865

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.54  E-value=1e-15  Score=177.55  Aligned_cols=211  Identities=22%  Similarity=0.300  Sum_probs=141.2

Q ss_pred             CCCCCceeecccCceeEEeccccCcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG  740 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~  740 (929)
                      .+|..++.|-.|+||.||..+++...+.|...+.. +.+--+||..+.+.           .+.|      |+-...++.
T Consensus        83 ~df~~IklisngAygavylvrh~~trqrfa~kiNk-q~lilRnilt~a~n-----------pfvv------gDc~tllk~  144 (1205)
T KOG0606|consen   83 SDFNTIKLISNGAYGAVYLVRHKETRQRFAMKINK-QNLILRNILTFAGN-----------PFVV------GDCATLLKN  144 (1205)
T ss_pred             cccceeEeeccCCCCceeeeeccccccchhhcccc-cchhhhccccccCC-----------ccee------chhhhhccc
Confidence            47888999999999999999999888888752210 11112233333222           2334      555555655


Q ss_pred             cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc---------cCCCCCccccceeccc
Q 002376          741 ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER---------VDNQSSISSTHVFMGS  811 (929)
Q Consensus       741 ~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~---------~~~~~~~~~~~~~~gt  811 (929)
                      ....-.+.+.|++|+|+.   +|+|||+||+|.+|+.-|.+|+.|||+++..-..         ............++||
T Consensus       145 ~g~lPvdmvla~Eylh~y---givhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgT  221 (1205)
T KOG0606|consen  145 IGPLPVDMVLAVEYLHSY---GIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGT  221 (1205)
T ss_pred             CCCCcchhhHHhHhhccC---CeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCC
Confidence            555556668999999998   9999999999999999999999999999864211         1111111233567999


Q ss_pred             cccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh-hcCCchh-hhccChHHHHhhcccchhhhhhhHHHHHHHHHHh
Q 002376          812 IGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE-SNLPENV-LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVG  889 (929)
Q Consensus       812 ~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~  889 (929)
                      +.|+|||++....|+..+|=|++|++.|++.+...++ +..|+.+ .+++... ..+..+++.        ...-+++++
T Consensus       222 PeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~-i~wpE~dea--------~p~Ea~dli  292 (1205)
T KOG0606|consen  222 PEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDD-IEWPEEDEA--------LPPEAQDLI  292 (1205)
T ss_pred             ccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhh-ccccccCcC--------CCHHHHHHH
Confidence            9999999999999999999999999999876665543 3334432 2222221 122211111        112223366


Q ss_pred             ccccCCCCCCCC
Q 002376          890 LSCTTESPGGRI  901 (929)
Q Consensus       890 ~~Cl~~dP~~RP  901 (929)
                      .+.++.+|..|-
T Consensus       293 ~~LL~qnp~~Rl  304 (1205)
T KOG0606|consen  293 EQLLRQNPLCRL  304 (1205)
T ss_pred             HHHHHhChHhhc
Confidence            688889999985

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.50  E-value=3.5e-14  Score=138.63  Aligned_cols=189  Identities=23%  Similarity=0.289  Sum_probs=135.6

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccCc--------------HHHHHHHHHHHHccCCc-cccceeeecccCCCC
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTGS--------------WKSFIAECETLRNVRHR-NLVKLITSCSSLDSK  717 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~--------------~~~~~~E~~~l~~l~Hp-niv~l~~~~~~~~~~  717 (929)
                      .+++.+ .+.|...++||+|+||.+|.|..-..              .-+...|.++.+.++|- .|..+..|..+    
T Consensus         8 ~~~~iv-~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e----   82 (341)
T KOG1163|consen    8 LEELIV-GGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKHPQLLYESKVYRILQGGVGIPHIRHYGTE----   82 (341)
T ss_pred             hhhhee-ccceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCCcchhHHHHHHHHhccCCCCchhhhhccc----
Confidence            344444 35899999999999999999876522              22466799999999874 44444444432    


Q ss_pred             CcceEEEEEEecCCCCccccccc--cc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEEec
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHG--ER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGD  785 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~--~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki~D  785 (929)
                       ..+-.+|||.. |.+|.+...-  ++       ..+-|+..-++|+|.+   ++|||||||+|.|..-+   ..+.+.|
T Consensus        83 -~~ynvlVMdLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r---~fiHRDIKPdNFLMGlgrh~~kl~LID  157 (341)
T KOG1163|consen   83 -KDYNVLVMDLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLR---NFIHRDIKPDNFLMGLGRHCNKLYLID  157 (341)
T ss_pred             -cccceeeeecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhh---ccccccCCccceeeccccccceEEEEe
Confidence             33458999998 7899887652  11       2256888899999998   89999999999998633   3688999


Q ss_pred             cccccccccccC-CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcC
Q 002376          786 FGLARFLLERVD-NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNL  851 (929)
Q Consensus       786 fGla~~~~~~~~-~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~  851 (929)
                      ||+|+.+..-.. .+..........||.+|.+--...+...+.+.|+-|.|-++..+.-..++|..+
T Consensus       158 FGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQgl  224 (341)
T KOG1163|consen  158 FGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGL  224 (341)
T ss_pred             ccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCccccc
Confidence            999997643211 122223345678999999987777777889999999997766665555565544

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.49  E-value=3.5e-14  Score=145.32  Aligned_cols=115  Identities=23%  Similarity=0.313  Sum_probs=93.0

Q ss_pred             eecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          668 LIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       668 ~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .||+|+||.||+|.+.+                      ..+++.+|+++++.++|+++.....++...+     ..++|
T Consensus         1 ~ig~G~~~~vy~~~~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~-----~~~lv   75 (199)
T TIGR03724         1 LIAKGAEAIIYLGDFLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPD-----NKTIV   75 (199)
T ss_pred             CCCCCceEEEEEeecCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC-----CCEEE
Confidence            48999999999998441                      0145668999999999887554444443222     25899


Q ss_pred             EEecCCCCccccccccc-cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          726 YEFLSNGSLGDWIHGER-KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~-~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      |||+++++|.+++.... ..+.+++.+++++|+.   +++|||+||.||+++ ++.+++.|||+++.
T Consensus        76 ~e~~~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~---gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        76 MEYIEGKPLKDVIEEGNDELLREIGRLVGKLHKA---GIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             EEEECCccHHHHHhhcHHHHHHHHHHHHHHHHHC---CeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            99999999999876544 5688999999999998   999999999999999 78999999999874

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=1.8e-15  Score=164.65  Aligned_cols=116  Identities=26%  Similarity=0.428  Sum_probs=94.3

Q ss_pred             ceEEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      .+.|+.|++|...+|.+|+...+           .+..|++.|++|   +   +.+|||+||.||....+..+||.|||+
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k---~~ihrdlkp~nif~~~d~q~kIgDFgl  402 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---K---GLIHRDLKPSNIFFSDDDQLKIGDFGL  402 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---c---cchhhhccccccccccchhhhhhhhhh
Confidence            35899999999999999996433           225678889999   4   899999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEF  841 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~  841 (929)
                      .................+..+||..||+||.+.+..|+.|+|||++|.+++|+
T Consensus       403 ~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL  455 (516)
T KOG1033|consen  403 VTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAEL  455 (516)
T ss_pred             eeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHH
Confidence            87664332111222234556899999999999999999999999999887774

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.48  E-value=4.8e-14  Score=145.74  Aligned_cols=116  Identities=22%  Similarity=0.322  Sum_probs=95.1

Q ss_pred             eeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          667 NLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.||+|++|.||+|...+                      ....+.+|++++..++|+++.....++...+     ..++
T Consensus         2 ~~l~~G~~~~vy~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~-----~~~l   76 (211)
T PRK14879          2 KLIKRGAEAEIYLGDFLGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPE-----NFII   76 (211)
T ss_pred             cccccCceEEEEEEeeCCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCC-----CCEE
Confidence            579999999999985431                      0135778999999999999877766654322     2689


Q ss_pred             EEEecCCCCccccccccc----cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ||||+++++|.+++....    .++.+++.+++++|+.   +++|||++|.||+++ ++.++++|||.++.
T Consensus        77 v~e~~~G~~L~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         77 VMEYIEGEPLKDLINSNGMEELELSREIGRLVGKLHSA---GIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             EEEEeCCcCHHHHHHhccHHHHHHHHHHHHHHHHHHhC---CcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            999999999999886432    4567899999999998   999999999999999 78999999999874

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.47  E-value=4.6e-15  Score=161.18  Aligned_cols=196  Identities=30%  Similarity=0.503  Sum_probs=161.8

Q ss_pred             CCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCE
Q 002376          326 NSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV  405 (929)
Q Consensus       326 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  405 (929)
                      .++.-...||+.|++. .+|..+..+. .|+.+.|..|.|. .+|..+.++..|++|||+.|+++ .+|..++.|+ |++
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3455567899999998 8999988887 7999999999998 78999999999999999999998 7888888886 999


Q ss_pred             EEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccE
Q 002376          406 LGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT  485 (929)
Q Consensus       406 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~  485 (929)
                      |-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..++++.+|+.|.+..|++.         .+|+++..| .|..
T Consensus       148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~---------~lp~El~~L-pLi~  215 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE---------DLPEELCSL-PLIR  215 (722)
T ss_pred             EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh---------hCCHHHhCC-ceee
Confidence            999999997 67888888899999999999998 67888899999999999999986         236666654 4888


Q ss_pred             EEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCC---CCCCEEECCCCc
Q 002376          486 IDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAEL---KGLEVLDLSSNK  540 (929)
Q Consensus       486 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~  540 (929)
                      ||+|.|+++ .+|-.|.+|+.|++|-|.+|.++ .+|..+...   .-.++|+..-++
T Consensus       216 lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  216 LDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            999999998 78888999999999999999888 455554332   224556655553

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.47  E-value=8.8e-14  Score=142.07  Aligned_cols=127  Identities=19%  Similarity=0.104  Sum_probs=97.0

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccCc-------------------------------------HHHHHHHHHHH
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTGS-------------------------------------WKSFIAECETL  696 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------------------------~~~~~~E~~~l  696 (929)
                      +++.+....|...+.||+|+||.||++.....                                     ...+..|...+
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            34444444477789999999999999876310                                     01256788889


Q ss_pred             HccCCcc--ccceeeecccCCCCCcceEEEEEEecCCCCcccccc--ccccccccHHHHHHHhhhCCCCCEEecCCCCCC
Q 002376          697 RNVRHRN--LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKNELDITSALDYLHNDCEVPVVHSDLKPGN  772 (929)
Q Consensus       697 ~~l~Hpn--iv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~--~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~N  772 (929)
                      .++.|++  +.+.++.+         ..++||||+++++|.+...  .....+.+++.++.++|+.   +|+||||||+|
T Consensus        88 ~~l~~~~i~v~~~~~~~---------~~~lv~e~~~g~~L~~~~~~~~~~~~~~~i~~~l~~lh~~---gi~H~Dl~p~N  155 (198)
T cd05144          88 KALYEEGFPVPKPIDWN---------RHAVVMEYIDGVELYRVRVLEDPEEVLDEILEEIVKAYKH---GIIHGDLSEFN  155 (198)
T ss_pred             HHHHHcCCCCCceeecC---------CceEEEEEeCCcchhhccccccHHHHHHHHHHHHHHHHHC---CCCcCCCCccc
Confidence            9888874  44444321         2489999999999987653  1223467899999999997   99999999999


Q ss_pred             eeecCCCceEEecccccccc
Q 002376          773 ILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       773 ILl~~~~~~ki~DfGla~~~  792 (929)
                      |++++++.++|+|||++...
T Consensus       156 ill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         156 ILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             EEEcCCCcEEEEECCccccC
Confidence            99999999999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.46  E-value=1.3e-13  Score=140.70  Aligned_cols=180  Identities=18%  Similarity=0.254  Sum_probs=131.5

Q ss_pred             CCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +|++.++||+|+||+++.|+.-              ...-+..-|.+..+.+. .+.|..++.|-     +...+-.||+
T Consensus        29 hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrkS~APQLrdEYr~YKlL~g~~GIP~vYYFG-----qeG~~NiLVi  103 (449)
T KOG1165|consen   29 HYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLGGTEGIPQVYYFG-----QEGKYNILVI  103 (449)
T ss_pred             cceeccccccCcceeeecccccccCceEEEEeccccCCcchHHHHHHHHHHHcCCCCCCceeeec-----cccchhhhhh
Confidence            7888999999999999998753              22345677888888875 57777766553     2233458999


Q ss_pred             EecCCCCccccccc--c-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-----ceEEecccccccc
Q 002376          727 EFLSNGSLGDWIHG--E-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-----TAKVGDFGLARFL  792 (929)
Q Consensus       727 e~~~~gsL~~~l~~--~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-----~~ki~DfGla~~~  792 (929)
                      |.. |.||.|...-  +       ..++.|+..-++|+|++   ..|.|||||+|.||..-+     .+.|.|||+|+.+
T Consensus       104 dLL-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k---~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~Y  179 (449)
T KOG1165|consen  104 DLL-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEK---DLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEY  179 (449)
T ss_pred             hhh-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhc---ceeecccCccceeecCCCCCCCceEEEEeccchhhh
Confidence            998 7788877652  1       23467888899999998   899999999999997543     5899999999987


Q ss_pred             ccccCC-CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhc
Q 002376          793 LERVDN-QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESN  850 (929)
Q Consensus       793 ~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~  850 (929)
                      ...... +..........||.+||+----.|+.-+.+-|.-++|-+.+.+.-+.++|..
T Consensus       180 rDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQG  238 (449)
T KOG1165|consen  180 RDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQG  238 (449)
T ss_pred             cCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCCCcccc
Confidence            543222 2222334556899999999888899999999999988543333334444433

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.41  E-value=8.1e-15  Score=159.29  Aligned_cols=169  Identities=30%  Similarity=0.463  Sum_probs=82.6

Q ss_pred             EEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcc
Q 002376          357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE  436 (929)
Q Consensus       357 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  436 (929)
                      ..||+.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|.+|||+.|+++ ..|..++.|+ |+.|-+++|+
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk  154 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK  154 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence            4455555554 44444455555555555555554 44555555555555555555554 3444444443 4555555555


Q ss_pred             cccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccc
Q 002376          437 LTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQ  516 (929)
Q Consensus       437 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~  516 (929)
                      ++ .+|..++.+..|..||.+.|.+.         .+|..++.+..|+.|.+..|++. .+|..+..| .|..||+|.|+
T Consensus       155 l~-~lp~~ig~~~tl~~ld~s~nei~---------slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNk  222 (722)
T KOG0532|consen  155 LT-SLPEEIGLLPTLAHLDVSKNEIQ---------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNK  222 (722)
T ss_pred             cc-cCCcccccchhHHHhhhhhhhhh---------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCc
Confidence            54 34444444445555555555442         22444555555555555555554 333344422 34455555555


Q ss_pred             ccccCCccccCCCCCCEEECCCCcCC
Q 002376          517 FSGPIPNIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       517 l~~~~p~~~~~l~~L~~L~Ls~N~l~  542 (929)
                      ++ .+|-.|.+|+.|++|-|.+|.|.
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq  247 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ  247 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC
Confidence            54 44445555555555555555554

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.39  E-value=2.1e-13  Score=162.34  Aligned_cols=235  Identities=15%  Similarity=0.116  Sum_probs=151.7

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccCcHH------------HHHHHHHHHHccC---CccccceeeecccCCCCCc
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWK------------SFIAECETLRNVR---HRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~------------~~~~E~~~l~~l~---Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.+...+.|.+.+.||+|+||+||+|.......            +|--=.+++.+++   -+-|..+...+.-.+.   
T Consensus       692 ~~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~---  768 (974)
T KOG1166|consen  692 EFEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLKPQMLPSIMHISSAHVFQNA---  768 (974)
T ss_pred             eeeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhchhhhcchHHHHHHHccCCc---
Confidence            444556678888999999999999998763110            1111223444444   1234444433322222   


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-------CCCceEEe
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-------EEMTAKVG  784 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-------~~~~~ki~  784 (929)
                        -++|+||.+.|+|.+++...+        .+..++++-+++||..   +|||+||||.|.||.       +...++|+
T Consensus       769 --S~lv~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~---~IIHgDiKPDNfll~~~~~~~~~~~~l~lI  843 (974)
T KOG1166|consen  769 --SVLVSEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAM---GIIHGDIKPDNFLLRREICADSDSKGLYLI  843 (974)
T ss_pred             --ceeeeeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhc---ceecccCCcceeEeecccCCCCcccceEEE
Confidence              489999999999999987433        2357899999999998   999999999999994       23468999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |||.+..+.-    .........+++|-++-.+|+..|++++..+|-|.+..+++-|..+..+. .... ....++..+.
T Consensus       844 DfG~siDm~l----fp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~q-~~~g-~~~~~~~~~~  917 (974)
T KOG1166|consen  844 DFGRSIDMKL----FPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYME-VKNG-SSWMVKTNFP  917 (974)
T ss_pred             ecccceeeeE----cCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHHH-hcCC-cceeccccch
Confidence            9999976532    12223445678999999999999999999999987765544444444443 1111 1111222222


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ...             -..+..++....+++|-..=|...++...++++...
T Consensus       918 Ry~-------------~~~~W~~~F~~lLN~~~~~~p~l~~lr~~~~~~~~~  956 (974)
T KOG1166|consen  918 RYW-------------KRDMWNKFFDLLLNPDCDTLPNLQELRTELEEVLAE  956 (974)
T ss_pred             hhh-------------hHHHHHHHHHHHhCcCcccchhHHHHHHHHHHHHHH
Confidence            211             011222355567775555567777777777776554

>smart00090 RIO RIO-like kinase

Probab=99.39  E-value=5.5e-13  Score=139.19  Aligned_cols=118  Identities=23%  Similarity=0.143  Sum_probs=89.3

Q ss_pred             CCCCceeecccCceeEEecc-cc-------------Cc---------------------------HHHHHHHHHHHHccC
Q 002376          662 NFSHENLIGSGSFGSVLHNE-RT-------------GS---------------------------WKSFIAECETLRNVR  700 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~-~~-------------~~---------------------------~~~~~~E~~~l~~l~  700 (929)
                      .|+..+.||+|+||.||+|. ..             ..                           ...+.+|++.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46677899999999999997 21             00                           012457999999997


Q ss_pred             Ccc--ccceeeecccCCCCCcceEEEEEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCC-EEecCCC
Q 002376          701 HRN--LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVP-VVHSDLK  769 (929)
Q Consensus       701 Hpn--iv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~-iiHrDlk  769 (929)
                      +..  +.+.+++.         ..++||||++++++..+...        ...++.+++.|++|||+.   + |+|||+|
T Consensus       109 ~~~i~~p~~~~~~---------~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~Dik  176 (237)
T smart00090      109 EAGVPVPKPIAWR---------RNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKE---GELVHGDLS  176 (237)
T ss_pred             hcCCCCCeeeEec---------CceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhc---CCEEeCCCC
Confidence            632  33333321         14899999999888765421        124567899999999998   8 9999999


Q ss_pred             CCCeeecCCCceEEecccccccc
Q 002376          770 PGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       770 ~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |+||+++ ++.++++|||.|...
T Consensus       177 p~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      177 EYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             hhhEEEE-CCCEEEEEChhhhcc
Confidence            9999999 889999999998754

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=99.38  E-value=1.5e-13  Score=140.15  Aligned_cols=197  Identities=23%  Similarity=0.288  Sum_probs=135.3

Q ss_pred             HHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCC
Q 002376          695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVP  762 (929)
Q Consensus       695 ~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~  762 (929)
                      -+-++.|-|+|+++.|+.+....+..+..++.|||+.|++.++|++.+            ++..||..||.|||+. .|+
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~-~Pp  198 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSC-DPP  198 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhcc-CCc
Confidence            345567999999999998876656677899999999999999998543            3467899999999994 789


Q ss_pred             EEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcc
Q 002376          763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFN  842 (929)
Q Consensus       763 iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~  842 (929)
                      |+|+++..+-|.+..+|-+||.--.-..... . ...........-.|-++|-|||+-.....+..+|||+||+.+.++.
T Consensus       199 iihgnlTc~tifiq~ngLIkig~~ap~s~h~-s-~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlema  276 (458)
T KOG1266|consen  199 IIHGNLTCDTIFIQHNGLIKIGSVAPDSTHP-S-VNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMA  276 (458)
T ss_pred             cccCCcchhheeecCCceEEecccCccccch-h-hhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHH
Confidence            9999999999999999999985322111000 0 0000011122345788999999988888899999999998777766


Q ss_pred             hhHHhhhcCCc--hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          843 IVKWVESNLPE--NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       843 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.+.-......  ...+-+...+..  .....+            ++.+..|++.+|..||+|++.+.
T Consensus       277 ilEiq~tnseS~~~~ee~ia~~i~~--len~lq------------r~~i~kcl~~eP~~rp~ar~llf  330 (458)
T KOG1266|consen  277 ILEIQSTNSESKVEVEENIANVIIG--LENGLQ------------RGSITKCLEGEPNGRPDARLLLF  330 (458)
T ss_pred             HheeccCCCcceeehhhhhhhheee--ccCccc------------cCcCcccccCCCCCCcchhhhhc
Confidence            55544322221  111111111111  011111            12667999999999999998753

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.34  E-value=4.2e-14  Score=164.31  Aligned_cols=225  Identities=19%  Similarity=0.182  Sum_probs=143.2

Q ss_pred             CCCCceeecccCceeEEeccccC---------------cHHHHHHHHHH--HHccCCccccceeeecccCCCCCcceEEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECET--LRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~--l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +|...+.+|++.|=+|.+|++..               ..+.|.++++-  ....+|||++++..+-..     ....||
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t-----~kAAyl   98 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGLVVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVT-----DKAAYL   98 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCceEEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHh-----hHHHHH
Confidence            45667889999998888887662               23455554443  445689999998776432     233688


Q ss_pred             EEEecCCCCccccccc--------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~--------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      |=+|..+ +|+|.+..        .+.++.|+..|+.-+|..   +|+|+|||.+||||+.--.+.++||.--|...-..
T Consensus        99 vRqyvkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~---gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPe  174 (1431)
T KOG1240|consen   99 VRQYVKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKL---GVCHGDIKSENILITSWNWLYLTDFASFKPTYLPE  174 (1431)
T ss_pred             HHHHHhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHc---CccccccccceEEEeeechhhhhcccccCCccCCC
Confidence            8888854 89888763        345688999999999998   99999999999999999999999998766432111


Q ss_pred             CCCCC-ccccceeccccccccccccCCC----------C-CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHH-
Q 002376          797 DNQSS-ISSTHVFMGSIGYVPPEYGLGE----------R-PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPEL-  863 (929)
Q Consensus       797 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~----------~-~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l-  863 (929)
                      ++... ......-.--..|+|||-+...          . .+++-||+|.||+..|+.+    .+.-+....+.+.-+- 
T Consensus       175 DNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~----Eg~PlF~LSQL~aYr~~  250 (1431)
T KOG1240|consen  175 DNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFL----EGRPLFTLSQLLAYRSG  250 (1431)
T ss_pred             CCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHh----cCCCcccHHHHHhHhcc
Confidence            11110 0000001112369999965431          1 5678899999987655322    2222222222111100 


Q ss_pred             -----HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          864 -----RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       864 -----~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                           ...+.+-+..          -++.++..|++.||++|-++++.++.
T Consensus       251 ~~~~~e~~Le~Ied~----------~~Rnlil~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  251 NADDPEQLLEKIEDV----------SLRNLILSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             CccCHHHHHHhCcCc----------cHHHHHHHHHccCchhccCHHHHHHh
Confidence                 0001111110          12336669999999999999999987

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.33  E-value=1.4e-12  Score=148.46  Aligned_cols=180  Identities=41%  Similarity=0.628  Sum_probs=99.4

Q ss_pred             CcccEEEeeCCCCCcccCccccCCC-CCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceec
Q 002376          377 RSLTLLDLSYNSISGEIPIEIGQLQ-GLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID  455 (929)
Q Consensus       377 ~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  455 (929)
                      +.++.|++.+|.++ .+|.....+. +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+..+.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhee
Confidence            44555555555554 3333444442 5555555555554 33344555555666666666655 3343333555566666


Q ss_pred             ccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEE
Q 002376          456 LSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD  535 (929)
Q Consensus       456 Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  535 (929)
                      +++|+++ .+        |..+.....|++|++++|++. .++..+.++..+..|.+++|++.. ++..++.+++|++|+
T Consensus       193 ls~N~i~-~l--------~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~  261 (394)
T COG4886         193 LSGNKIS-DL--------PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLD  261 (394)
T ss_pred             ccCCccc-cC--------chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceec
Confidence            6666654 22        443344445666666666433 344556666666666666666652 355566666677777


Q ss_pred             CCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC
Q 002376          536 LSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE  572 (929)
Q Consensus       536 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  572 (929)
                      +++|.++. ++. +..+.+|+.|++++|.++..+|..
T Consensus       262 ~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         262 LSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             cccccccc-ccc-ccccCccCEEeccCccccccchhh
Confidence            77776663 333 666666777777777666655543

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.31  E-value=4.1e-12  Score=132.91  Aligned_cols=101  Identities=20%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHccCCccc--cceeeecccCCCCCcceEEEEEEecCC-CCccccccccc---cccccHHHHHHHhhhCCC
Q 002376          687 KSFIAECETLRNVRHRNL--VKLITSCSSLDSKNMEFLALVYEFLSN-GSLGDWIHGER---KNELDITSALDYLHNDCE  760 (929)
Q Consensus       687 ~~~~~E~~~l~~l~Hpni--v~l~~~~~~~~~~~~~~~~lV~e~~~~-gsL~~~l~~~~---~~~~~ia~aL~yLH~~~~  760 (929)
                      ..+.+|++++.+++|+++  ++.+++..... ......++||||+++ .+|.+++....   ....+++.++.+||+.  
T Consensus        85 ~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~-~~~~~~~lV~e~l~G~~~L~~~l~~~~l~~~~~~~i~~~l~~lH~~--  161 (239)
T PRK01723         85 TRAFAEFRLLAQLYEAGLPVPRPIAARVVRH-GLFYRADILIERIEGARDLVALLQEAPLSEEQWQAIGQLIARFHDA--  161 (239)
T ss_pred             hHHHHHHHHHHHHHhCCCCCceeEeeeeeec-CcceeeeEEEEecCCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHC--
Confidence            356789999999998875  66676644322 112224699999997 68888875432   2256799999999998  


Q ss_pred             CCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                       +|+|||+||.|||++.++.++|+|||.++.
T Consensus       162 -GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        162 -GVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             -CCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence             999999999999999989999999999874

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.29  E-value=3.8e-12  Score=123.58  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=97.1

Q ss_pred             ceeecccCceeEEeccccC----------c--HHHHHHHHHHHHccCC--ccccceeeecccCCCCCcceEEEEEEecCC
Q 002376          666 ENLIGSGSFGSVLHNERTG----------S--WKSFIAECETLRNVRH--RNLVKLITSCSSLDSKNMEFLALVYEFLSN  731 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~----------~--~~~~~~E~~~l~~l~H--pniv~l~~~~~~~~~~~~~~~~lV~e~~~~  731 (929)
                      .+.||+|.++.||++...+          .  ...+.+|+..++.++|  +.+.++++++...     ...+++|||+++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~~~~~iK~~~~~~~~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~-----~~~~~v~e~~~g   77 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADREREVAILQLLARKGLPVPKVLASGESD-----GWSYLLMEWIEG   77 (155)
T ss_pred             ceecccccccceEEEEecCCeEEEEecCCCCchhHHHHHHHHHHHHHHcCCCCCeEEEEcCCC-----CccEEEEEecCC
Confidence            4679999999999887631          1  2478999999999987  4888888877432     347999999998


Q ss_pred             CCccccc-cccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          732 GSLGDWI-HGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       732 gsL~~~l-~~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +.+..+- ........+++++++++|.....+++|||+||+||++++.+.+++.|||.++..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120          78 ETLDEVSEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             eecccCCHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            8887541 112234678999999999865557999999999999999899999999998753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.29  E-value=4.8e-12  Score=144.15  Aligned_cols=201  Identities=37%  Similarity=0.545  Sum_probs=157.2

Q ss_pred             EEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC-cccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR-SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       332 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      .++++.|.+...+ ..+.... .++.|++.+|.++ .+|.....++ +|+.|++++|++. .+|..++.+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCc-hhhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            5777777774332 2333333 6888889988888 5666667774 8999999999998 5667788899999999999


Q ss_pred             CcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecC
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD  490 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~  490 (929)
                      |+++ .+|.....++.|+.|++++|+++ .+|........|++|++++|++.         ..+..+..+.++..+.+++
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~---------~~~~~~~~~~~l~~l~l~~  241 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII---------ELLSSLSNLKNLSGLELSN  241 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce---------ecchhhhhcccccccccCC
Confidence            9998 45655557889999999999998 56666556667999999999532         1266778888999999999


Q ss_pred             CCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccc
Q 002376          491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQ  550 (929)
Q Consensus       491 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  550 (929)
                      |++. .++..++++.++++|++++|+++...+  ++.+.+|+.||+++|.++...|....
T Consensus       242 n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~  298 (394)
T COG4886         242 NKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL  298 (394)
T ss_pred             ceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence            9887 347788999999999999999985444  88999999999999999977665543

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.28  E-value=9.8e-13  Score=138.07  Aligned_cols=209  Identities=18%  Similarity=0.135  Sum_probs=117.7

Q ss_pred             CCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCC-----------ccccceeeecc
Q 002376          663 FSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRH-----------RNLVKLITSCS  712 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~H-----------pniv~l~~~~~  712 (929)
                      +...+.||.|+++.||.+++..                   ..+++.+|.-....+.+           ..++++--.-.
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            3456889999999999988762                   35667777655544322           22222211111


Q ss_pred             cCCC------CCcc-----eEEEEEEecCCCCccccccc-----cc----------cccccHHHHHHHhhhCCCCCEEec
Q 002376          713 SLDS------KNME-----FLALVYEFLSNGSLGDWIHG-----ER----------KNELDITSALDYLHNDCEVPVVHS  766 (929)
Q Consensus       713 ~~~~------~~~~-----~~~lV~e~~~~gsL~~~l~~-----~~----------~~~~~ia~aL~yLH~~~~~~iiHr  766 (929)
                      ....      .+..     ..+++|+-+ .+||.+++..     ..          ....|+.+.+++||+.   |+||+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEec
Confidence            1000      0001     236778877 5688877641     00          1136788999999998   99999


Q ss_pred             CCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCC--------CCCCCCCCCCCcCCC
Q 002376          767 DLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE--------RPSTAGDVPTSESFA  838 (929)
Q Consensus       767 Dlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--------~~~~~~DV~s~g~~~  838 (929)
                      ||||+|++++.+|.++++||+........         ......+..|.+||.....        .++.+.|.|++|+++
T Consensus       170 di~~~nfll~~~G~v~Lg~F~~~~r~g~~---------~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~DaW~LG~~l  240 (288)
T PF14531_consen  170 DIKPENFLLDQDGGVFLGDFSSLVRAGTR---------YRCSEFPVAFTPPELESCAGQFGQNNAPYTFATDAWQLGITL  240 (288)
T ss_dssp             T-SGGGEEE-TTS-EEE--GGGEEETTEE---------EEGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHHHHHHHHHHH
T ss_pred             ccceeeEEEcCCCCEEEcChHHHeecCce---------eeccCCCcccCChhhhhhhcccCcccceeeeccCHHHHHHHH
Confidence            99999999999999999999977643211         0102345789999976432        478899999999544


Q ss_pred             CCcchhHHhhhcCCch--hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCC
Q 002376          839 GEFNIVKWVESNLPEN--VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGR  900 (929)
Q Consensus       839 ~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R  900 (929)
                           +.+....+|..  ..+..+.......          . .+++.++.|+...++++|++|
T Consensus       241 -----y~lWC~~lPf~~~~~~~~~~~~f~~C----------~-~~Pe~v~~LI~~lL~~~~~~R  288 (288)
T PF14531_consen  241 -----YSLWCGRLPFGLSSPEADPEWDFSRC----------R-DMPEPVQFLIRGLLQRNPEDR  288 (288)
T ss_dssp             -----HHHHHSS-STCCCGGGSTSGGGGTTS----------S----HHHHHHHHHHT-SSGGGS
T ss_pred             -----HHHHHccCCCCCCCccccccccchhc----------C-CcCHHHHHHHHHHccCCcccC
Confidence                 44444555542  1111111111111          1 244555567779999999988

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.26  E-value=7.5e-13  Score=155.12  Aligned_cols=231  Identities=25%  Similarity=0.264  Sum_probs=155.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ..|...+.||+|+|+.|-......                   ..+....|..+-..+. |+|++.+++.....     .
T Consensus        20 ~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~-----~   94 (601)
T KOG0590|consen   20 SQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSP-----R   94 (601)
T ss_pred             ccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCC-----c
Confidence            356667789999999985544321                   1222334666666666 99999999987544     3


Q ss_pred             eEEEEEEecCCCCccccc-ccc---------ccccccHHHHHHHhh-hCCCCCEEecCCCCCCeeecCCC-ceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWI-HGE---------RKNELDITSALDYLH-NDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l-~~~---------~~~~~~ia~aL~yLH-~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGl  788 (929)
                      ..+++.||..+|++.+.+ +..         ..+..|+..|+.|+| ..   ++.|||+||+|.+++..+ ..|++|||+
T Consensus        95 ~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~---~~~h~~ikP~n~~l~~s~~~l~~~df~~  171 (601)
T KOG0590|consen   95 SYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPEN---GVTHRDIKPSNSLLDESGSALKIADFGL  171 (601)
T ss_pred             ccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCccc---ccccCCCCCccchhccCCCcccCCCchh
Confidence            479999999999999988 422         233568889999999 65   899999999999999999 999999999


Q ss_pred             ccccccccCCCCCccccceecc-ccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          789 ARFLLERVDNQSSISSTHVFMG-SIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~g-t~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      |..+...   ..........+| ++.|+|||...+. ......|+||.|+.+..+...+.++.....     .+.....+
T Consensus       172 At~~~~~---~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l~~~~~g~~p~~~~~~-----~~~~~~~~  243 (601)
T KOG0590|consen  172 ATAYRNK---NGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVLSAMLTGELPWDFPSR-----KDGRYSSW  243 (601)
T ss_pred             hcccccc---CCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccccccccCCCCcccccc-----ccccceee
Confidence            9876431   111222344578 9999999998885 458889999999887776665555433322     11111111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      ...........+..+..-..++..+++..+|+.|.+.+++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~~r~s~~~~~  284 (601)
T KOG0590|consen  244 KSNKGRFTQLPWNSISDQAHDLLHKILKENPSNRLSIEELK  284 (601)
T ss_pred             cccccccccCccccCChhhhhcccccccCCchhcccccccc
Confidence            11110001111112222222266688889999999987764

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.20  E-value=1.7e-11  Score=124.05  Aligned_cols=67  Identities=27%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             EEEEEEecCCCC-----cccccc--ccccccccHHHHHHHhhh-CCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGS-----LGDWIH--GERKNELDITSALDYLHN-DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gs-----L~~~l~--~~~~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||++++.     +.+...  ..+..+.+++.++.++|. .   +|+|||+||+||+++ ++.++++|||.++..
T Consensus        90 ~~lv~e~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~lh~~~---~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119          90 HVLVMEFIGGDGIPAPRLKDVRLLEDPEELYDQILELMRKLYREA---GLVHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             CEEEEEEeCCCCccChhhhhhhhcccHHHHHHHHHHHHHHHhhcc---CcCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            589999999853     433322  234457789999999998 6   999999999999999 889999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.11  E-value=2e-11  Score=122.93  Aligned_cols=137  Identities=31%  Similarity=0.351  Sum_probs=84.0

Q ss_pred             ccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCC
Q 002376          419 NSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP  498 (929)
Q Consensus       419 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p  498 (929)
                      ..+..+..|+.+|||+|.|+ .+..+..-.+.++.|++|+|.|.. +         ..+..+.+|+.||||+|.++ .+.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v---------~nLa~L~~L~~LDLS~N~Ls-~~~  345 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V---------QNLAELPQLQLLDLSGNLLA-ECV  345 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e---------hhhhhcccceEeecccchhH-hhh
Confidence            33444456667777777776 455555556667777777776652 1         23555666777777777666 344


Q ss_pred             cchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcC-CcccccCCCCCeEeCCCCcCcccC
Q 002376          499 NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSI-PSDLQNLQALRSLNLTFNNLEGVV  569 (929)
Q Consensus       499 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~  569 (929)
                      .+-..+-+.+.|.|+.|.|...  +.++.+-+|..||+++|++.... -..+++++-|+.+.|.+|.+++.+
T Consensus       346 Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  346 GWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            4445566667777777776532  34556667777777777765322 235666777777777777776543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=8.9e-12  Score=132.23  Aligned_cols=212  Identities=21%  Similarity=0.205  Sum_probs=104.3

Q ss_pred             CCCCCCCEEEeecCCCCCCCC--cCCCCCCCCcEEeCCCCCCCCCcc--cccccccccceecccccccCCCCChhhhccC
Q 002376           92 GNLSFLRSIQLQNNKLSGNLP--REIGNLFRLRVLNISFNNLQGELP--VNISKLTELKMLDLMANKITGRVTDDQLRNL  167 (929)
Q Consensus        92 ~~L~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l  167 (929)
                      .++.+|+...|.+.... ..+  .....|++++.||||+|-|....|  .....|++|+.|+||.|++.-.+....-..+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            34556666666665554 222  234456666666666666553322  2334556666666666666432222222344


Q ss_pred             CCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccC
Q 002376          168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDT  247 (929)
Q Consensus       168 ~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  247 (929)
                      ++|+.|.|+.+.|+..-   +.    .....+++|+.|+|..|....+.......+..|++|||++|++-. .+.     
T Consensus       197 ~~lK~L~l~~CGls~k~---V~----~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~-----  263 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKD---VQ----WILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQ-----  263 (505)
T ss_pred             hhhheEEeccCCCCHHH---HH----HHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-ccc-----
Confidence            55555666555543210   00    112234555566666554333333344445555556665555531 110     


Q ss_pred             CCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCC-ccCC-----CCCCCccceeccccccccCCCCCCCCccc
Q 002376          248 LPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT-LPPG-----LGNLPFLRTYNIGFNKIVSSGDDEGLSFI  321 (929)
Q Consensus       248 l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~~~  321 (929)
                                        -...+.++.|+.|+++.+.++.. .|+.     ....++|++|++..|+|....      ..
T Consensus       264 ------------------~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~------sl  319 (505)
T KOG3207|consen  264 ------------------GYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWR------SL  319 (505)
T ss_pred             ------------------ccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccc------cc
Confidence                              12234455555555555555432 1222     345566666666666664332      22


Q ss_pred             cccCCCCCCCEEEccCCccc
Q 002376          322 TSLTNSTHLNYLALDGNQFE  341 (929)
Q Consensus       322 ~~~~~l~~L~~L~Ls~N~l~  341 (929)
                      ..+..+.+|+.|....|.++
T Consensus       320 ~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  320 NHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             chhhccchhhhhhccccccc
Confidence            34444556666666666665

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.8e-11  Score=123.36  Aligned_cols=132  Identities=33%  Similarity=0.352  Sum_probs=69.9

Q ss_pred             CCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccccccee
Q 002376          375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI  454 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  454 (929)
                      .+..|+.+|||+|.|+ .+..+..-++.++.|++|+|.|...  +.+..+++|+.||||+|.++ .+-.+-..+-++++|
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL  357 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence            3445555666666555 3444444555555555555555421  22555556666666666655 223333334455555


Q ss_pred             cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccC-CccccCCCCCCE
Q 002376          455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI-PNIVAELKGLEV  533 (929)
Q Consensus       455 ~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~  533 (929)
                      .|+.|.|..          -+                        .++.+-+|..||+++|+|...- -..+++++-|+.
T Consensus       358 ~La~N~iE~----------LS------------------------GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  358 KLAQNKIET----------LS------------------------GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             ehhhhhHhh----------hh------------------------hhHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence            555555431          11                        2334445555555555554221 235677777788


Q ss_pred             EECCCCcCCCc
Q 002376          534 LDLSSNKLSGS  544 (929)
Q Consensus       534 L~Ls~N~l~~~  544 (929)
                      |.|.+|.+.+.
T Consensus       404 l~L~~NPl~~~  414 (490)
T KOG1259|consen  404 LRLTGNPLAGS  414 (490)
T ss_pred             HhhcCCCcccc
Confidence            88888877753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.09  E-value=4.8e-11  Score=116.60  Aligned_cols=130  Identities=32%  Similarity=0.434  Sum_probs=45.7

Q ss_pred             CCCCCCCCCEEEeecCCCCCCCCcCCC-CCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCC
Q 002376           90 HIGNLSFLRSIQLQNNKLSGNLPREIG-NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLR  168 (929)
Q Consensus        90 ~l~~L~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~  168 (929)
                      .+.+...+++|+|++|.|+. + +.++ .+.+|+.||||+|.|+.. + .+..+++|++|+|++|+|+ .+.+.....++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            34556678999999999873 3 3455 578899999999999843 3 4778899999999999998 56654234688


Q ss_pred             CCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccC---CccccCCCCceEEe
Q 002376          169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP---STIYNMTSLVHLRL  231 (929)
Q Consensus       169 ~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L  231 (929)
                      +|+.|+|++|++..     +..+  ..++.+++|++|+|.+|.++...-   ..+..+++|+.||-
T Consensus        89 ~L~~L~L~~N~I~~-----l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   89 NLQELYLSNNKISD-----LNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TTS---S-----CCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             cCCEEECcCCcCCC-----hHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            99999999998743     2221  234567777777777777763211   13445666666553

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.06  E-value=2.5e-11  Score=138.46  Aligned_cols=213  Identities=32%  Similarity=0.363  Sum_probs=136.4

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      +|..|++.+|+|... ...+..+++|++|+|++|+|+...  .+..++.|+.|++++|.|+..  ..+..++.|+.++++
T Consensus        96 ~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   96 SLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLS  170 (414)
T ss_pred             ceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCC
Confidence            455555555555432 222556677777777777776443  244556677777777777632  344557778888888


Q ss_pred             CcccccccC-cccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCc--Cccee
Q 002376          434 GNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK--SLEEL  510 (929)
Q Consensus       434 ~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~--~L~~L  510 (929)
                      +|++....+ . ...+.+++.+++.+|.+.-          ...+..+..+..+++..|.++-.-+  +..+.  .|+.+
T Consensus       171 ~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~----------i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l  237 (414)
T KOG0531|consen  171 YNRIVDIENDE-LSELISLEELDLGGNSIRE----------IEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLREL  237 (414)
T ss_pred             cchhhhhhhhh-hhhccchHHHhccCCchhc----------ccchHHHHHHHHhhcccccceeccC--cccchhHHHHHH
Confidence            888875444 2 4667788888888888752          2334445556666888888763322  11222  38899


Q ss_pred             ecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccC---CC--CCCCCCCCcccccC
Q 002376          511 LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVV---PS--EGIFRNMSNVHLKG  585 (929)
Q Consensus       511 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~---p~--~~~~~~l~~l~l~~  585 (929)
                      ++++|.+. .++..+..+..+..||+++|++...  ..+.....+..+.+..|.+...-   ..  .....++..+.+.+
T Consensus       238 ~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (414)
T KOG0531|consen  238 YLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLEL  314 (414)
T ss_pred             hcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccccccc
Confidence            99999987 3435677788899999999998754  23555667777888888876321   11  23345666677777


Q ss_pred             CC
Q 002376          586 NP  587 (929)
Q Consensus       586 N~  587 (929)
                      ||
T Consensus       315 ~~  316 (414)
T KOG0531|consen  315 NP  316 (414)
T ss_pred             Cc
Confidence            76

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.05  E-value=2.3e-11  Score=138.70  Aligned_cols=248  Identities=27%  Similarity=0.368  Sum_probs=142.3

Q ss_pred             CCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCc
Q 002376           92 GNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQ  171 (929)
Q Consensus        92 ~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~  171 (929)
                      ..+..++.+++..|.+. .+-..+..+++|+.|++.+|+|.. +...+..+++|++|||++|+|+ .+..  +..++.|+
T Consensus        69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~  143 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLK  143 (414)
T ss_pred             HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchh
Confidence            35566777777777776 344456777788888888888874 3333667788888888888887 3322  56666678


Q ss_pred             EEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccC-CccccCCCCceEEeeecCCCCcCCcccccCCCC
Q 002376          172 VLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP-STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPN  250 (929)
Q Consensus       172 ~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~  250 (929)
                      .|++++|.++..          ..+..+.+|+.+++++|++..+.+ . ...+.+++.+++++|.+.. +          
T Consensus       144 ~L~l~~N~i~~~----------~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~-i----------  201 (414)
T KOG0531|consen  144 ELNLSGNLISDI----------SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE-I----------  201 (414)
T ss_pred             hheeccCcchhc----------cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc-c----------
Confidence            888888876421          234457777777888887775554 2 4566777777777777651 1          


Q ss_pred             cceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCC--ccceeccccccccCCCCCCCCccccccCCCC
Q 002376          251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP--FLRTYNIGFNKIVSSGDDEGLSFITSLTNST  328 (929)
Q Consensus       251 L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~  328 (929)
                                      ..+..+..+..+++..|.++..-+  +..+.  +|+.+++++|.+....        ..+..+.
T Consensus       202 ----------------~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~--------~~~~~~~  255 (414)
T KOG0531|consen  202 ----------------EGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP--------EGLENLK  255 (414)
T ss_pred             ----------------cchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc--------ccccccc
Confidence                            112222233333444444442211  11111  2555555555554431        1234455


Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccc---cCCC-CCCCCcccEEEeeCCCCCcccCc
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK---IPAS-IGRLRSLTLLDLSYNSISGEIPI  395 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~---~p~~-~~~l~~L~~L~Ls~N~l~~~~p~  395 (929)
                      .+..|++.+|++...-.  +.... .+..+.+..|.+...   .... ....+.++...+..|.+....+.
T Consensus       256 ~l~~l~~~~n~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  256 NLPVLDLSSNRISNLEG--LERLP-KLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             cccccchhhcccccccc--ccccc-hHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence            66666666666653211  11122 455556666655421   1111 45567788888888877755443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.99  E-value=2.5e-10  Score=111.59  Aligned_cols=79  Identities=30%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             cccCccEEEecCCCCCCCCCcch-hcCcCcceeecccccccccCC-ccccCCCCCCEEECCCCcCCCcCCc----ccccC
Q 002376          479 RLENVVTIDLSDNSLSGNLPNSL-KNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLSGSIPS----DLQNL  552 (929)
Q Consensus       479 ~l~~L~~LdLs~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l  552 (929)
                      .++.|++|++++|+++. ++..+ ..+++|++|+|++|+|...-. ..++.+++|++|+|.+|.++.. +.    .+..+
T Consensus        62 ~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~l  139 (175)
T PF14580_consen   62 GLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKL  139 (175)
T ss_dssp             --TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-
T ss_pred             ChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHc
Confidence            34445555555555542 22222 235555555555555543211 2344556666666666665532 21    23445


Q ss_pred             CCCCeEe
Q 002376          553 QALRSLN  559 (929)
Q Consensus       553 ~~L~~L~  559 (929)
                      |+|+.||
T Consensus       140 P~Lk~LD  146 (175)
T PF14580_consen  140 PSLKVLD  146 (175)
T ss_dssp             TT-SEET
T ss_pred             ChhheeC
Confidence            6666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=7.1e-11  Score=125.49  Aligned_cols=167  Identities=23%  Similarity=0.218  Sum_probs=96.5

Q ss_pred             ccccccceecccccccCCCCCh-hhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCC
Q 002376          140 SKLTELKMLDLMANKITGRVTD-DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPS  218 (929)
Q Consensus       140 ~~l~~L~~L~Ls~N~l~~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~  218 (929)
                      +++.+|++..|.+.... ..+. .....|++++.||||+|-|+..-|      +..-...|++|+.|+|+.|++.....+
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~------v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFP------VLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHH------HHHHHHhcccchhcccccccccCCccc
Confidence            34556666666666554 2221 345566666666666665543211      111234566666666666666533222


Q ss_pred             cc-ccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCc-cCCCCCC
Q 002376          219 TI-YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTL-PPGLGNL  296 (929)
Q Consensus       219 ~~-~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l  296 (929)
                      .. ..++.|+.|.|++|.|+..--..+....|+|+.|+|..|...+....+...+..|+.|||++|++-... -...+.+
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc
Confidence            11 145667777777777763211223334677777777777544444455566778888888888876322 1456777


Q ss_pred             CccceeccccccccCCC
Q 002376          297 PFLRTYNIGFNKIVSSG  313 (929)
Q Consensus       297 ~~L~~L~L~~N~i~~~~  313 (929)
                      +.|+.|+++.+.|.++.
T Consensus       271 ~~L~~Lnls~tgi~si~  287 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIA  287 (505)
T ss_pred             cchhhhhccccCcchhc
Confidence            78888888777776653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.97  E-value=7.9e-12  Score=129.31  Aligned_cols=265  Identities=25%  Similarity=0.324  Sum_probs=122.0

Q ss_pred             CCCCCCCCcEEeCCCCCCCCC----cccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCcccc
Q 002376          114 EIGNLFRLRVLNISFNNLQGE----LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIA  189 (929)
Q Consensus       114 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~  189 (929)
                      .+..+..++.|+||+|.|...    +-..+.+.++|+..++|+ -++|..-.                     .+|..+.
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~---------------------Ei~e~L~   82 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKD---------------------EIPEALK   82 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHH---------------------HHHHHHH
Confidence            344556677777777766533    223344555666666553 23333221                     1222221


Q ss_pred             ccCCCccCCCCcccEEEeecccCCCccCCc----cccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCC
Q 002376          190 NLIPSDLSRLENLKVLDLTINRLAGTVPST----IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKI  265 (929)
Q Consensus       190 ~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~  265 (929)
                      . +...+.+.++|++||||.|-+.-..+..    +..++.|++|+|.+|.+.-.--..+...+.   .+.  .|+.    
T Consensus        83 ~-l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~---~l~--~~kk----  152 (382)
T KOG1909|consen   83 M-LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALF---ELA--VNKK----  152 (382)
T ss_pred             H-HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHH---HHH--HHhc----
Confidence            1 2223444556777777777665443333    345778888888888775111111111111   111  1111    


Q ss_pred             CCcccccccccEEeccCccCcCC----ccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccc
Q 002376          266 PGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFE  341 (929)
Q Consensus       266 p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  341 (929)
                         ...-..|+++...+|++...    +...|...+.|+.+.+..|.|..-+..   .....+..+++|+.|||.+|-|+
T Consensus       153 ---~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  153 ---AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---ALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ---cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhH---HHHHHHHhCCcceeeecccchhh
Confidence               12234566666666666532    112334444455555555544322210   01123344444444444444443


Q ss_pred             cccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccc-----cCCCCCCEEEecCCcCCCC
Q 002376          342 GKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-----GQLQGLQVLGLAGNEIPGG  416 (929)
Q Consensus       342 ~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~  416 (929)
                      ..-..                     .+...+..+++|+.|+++++.++..-...|     ...++|++|.|.+|.|+..
T Consensus       227 ~egs~---------------------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d  285 (382)
T KOG1909|consen  227 LEGSV---------------------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD  285 (382)
T ss_pred             hHHHH---------------------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH
Confidence            21111                     122344555667777777776654332222     1245556666666655421


Q ss_pred             ----CcccccCCCCCceecccCccc
Q 002376          417 ----IPNSLANLKKLNQIDLSGNEL  437 (929)
Q Consensus       417 ----~p~~~~~l~~L~~L~Ls~N~l  437 (929)
                          +.......+.|..|+|++|++
T Consensus       286 a~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  286 AALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHHHHhcchhhHHhcCCcccc
Confidence                122233344555555555555

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.96  E-value=7.5e-10  Score=126.09  Aligned_cols=98  Identities=19%  Similarity=0.207  Sum_probs=66.6

Q ss_pred             HHHHHHHHHccC----CccccceeeecccCCCCCcceEEEEEEecCCCCcccccccc------ccccccHHH-HHHHhhh
Q 002376          689 FIAECETLRNVR----HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE------RKNELDITS-ALDYLHN  757 (929)
Q Consensus       689 ~~~E~~~l~~l~----Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~-aL~yLH~  757 (929)
                      |.+|++.+.+++    |.+-|.+-.+|.+..    ...++||||++|+++.++....      ...+..++. .+..+|.
T Consensus       200 f~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~----~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~  275 (437)
T TIGR01982       200 LRREAANASELGENFKNDPGVYVPEVYWDRT----SERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLR  275 (437)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEeCCEehhhc----CCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            445666555552    333333333332211    1258999999999999876421      122333444 4667787


Q ss_pred             CCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       758 ~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .   +++|+|+||.||++++++.+++.|||+++.+.
T Consensus       276 ~---g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~  308 (437)
T TIGR01982       276 D---GFFHADLHPGNIFVLKDGKIIALDFGIVGRLS  308 (437)
T ss_pred             C---CceeCCCCcccEEECCCCcEEEEeCCCeeECC
Confidence            6   99999999999999999999999999998764

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.96  E-value=1.1e-09  Score=108.94  Aligned_cols=118  Identities=21%  Similarity=0.178  Sum_probs=85.6

Q ss_pred             ceeecccCceeEEeccccC-------------cHHHHHHHHHHHHccCCccccc-eeeecccCCCCCcceEEEEEEecCC
Q 002376          666 ENLIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVRHRNLVK-LITSCSSLDSKNMEFLALVYEFLSN  731 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~-------------~~~~~~~E~~~l~~l~Hpniv~-l~~~~~~~~~~~~~~~~lV~e~~~~  731 (929)
                      .+.++.|.++.||+++..+             ....+.+|+++++.+.+.++++ ++.+..  +     ..++||||+++
T Consensus         3 ~~~l~~G~~~~vy~~~~~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~~P~~~~~~~--~-----~~~lv~e~i~G   75 (170)
T cd05151           3 ISPLKGGMTNKNYRVEVANKKYVVRIPGNGTELLINRENEAENSKLAAEAGIGPKLYYFDP--E-----TGVLITEFIEG   75 (170)
T ss_pred             eeecCCcccCceEEEEECCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCCCCceEEEeC--C-----CCeEEEEecCC
Confidence            3567888888888765431             1234678999999987666554 444321  1     13799999999


Q ss_pred             CCccccccccccccccHHHHHHHhhhCC--CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          732 GSLGDWIHGERKNELDITSALDYLHNDC--EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       732 gsL~~~l~~~~~~~~~ia~aL~yLH~~~--~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .++.+.-...+....+++++++.||+..  ...++|+|++|.||+++ ++.+++.|||.+..
T Consensus        76 ~~l~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          76 SELLTEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             CccccccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            9887642223344678999999999873  22369999999999999 66899999999864

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.91  E-value=1.2e-09  Score=80.38  Aligned_cols=40  Identities=53%  Similarity=1.184  Sum_probs=31.3

Q ss_pred             hhhHHHHHHHHhhcCCCCCCCCCCCCCCC--CCCCCCcceeeC
Q 002376           27 NTDKEALMSFKSQISQESPSSPLSYWNPS--SSPCTWPGVICN   67 (929)
Q Consensus        27 ~~~~~aLl~~k~~~~~~~~~~~l~~w~~~--~~~c~w~gv~c~   67 (929)
                      ++|++||++||+++..+ |.+.+++|+.+  .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~-~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNND-PSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-S-C-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccc-cCcccccCCCcCCCCCeeeccEEeC
Confidence            68999999999999865 67999999987  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=8.7e-11  Score=121.72  Aligned_cols=231  Identities=21%  Similarity=0.313  Sum_probs=130.1

Q ss_pred             cCCCCCCCCCCCEEEeecCCCCC----CCCcCCCCCCCCcEEeCCCC---CCCCCccccc-------ccccccceecccc
Q 002376           87 ISPHIGNLSFLRSIQLQNNKLSG----NLPREIGNLFRLRVLNISFN---NLQGELPVNI-------SKLTELKMLDLMA  152 (929)
Q Consensus        87 i~~~l~~L~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~  152 (929)
                      +-+.+..+..++.|+||+|.+..    .+-..+.+.++|+.-++|+-   ++...+|+.+       -..++|++||||+
T Consensus        22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD  101 (382)
T KOG1909|consen   22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD  101 (382)
T ss_pred             HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence            33556678899999999999963    35566788889999999864   3334556543       3456788888888


Q ss_pred             cccCCCCCh---hhhccCCCCcEEEccccccCCCCCccccc----c-CCCccCCCCcccEEEeecccCCCcc----CCcc
Q 002376          153 NKITGRVTD---DQLRNLRSLQVLNFGKNLLWGSIPPSIAN----L-IPSDLSRLENLKVLDLTINRLAGTV----PSTI  220 (929)
Q Consensus       153 N~l~~~i~~---~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~----l-~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~  220 (929)
                      |.|.-.-+.   +.+.++.+|+.|.|.+|-+.-.--..++.    + ...-...-++|+++...+|++....    ...|
T Consensus       102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            887522221   23456777888888877552100001100    0 1111223345666666666654321    2234


Q ss_pred             ccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCC----ccCCCCCC
Q 002376          221 YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNL  296 (929)
Q Consensus       221 ~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l  296 (929)
                      ...+.|+.+.++.|.|.   |..+                  ..+-..|..+++|++|||.+|-|+..    +...+..+
T Consensus       182 ~~~~~leevr~~qN~I~---~eG~------------------~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~  240 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIR---PEGV------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW  240 (382)
T ss_pred             HhccccceEEEeccccc---Cchh------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence            44455555555555543   1111                  01223466777888888888877632    33456666


Q ss_pred             CccceeccccccccCCCCCCCCccccccC-CCCCCCEEEccCCccc
Q 002376          297 PFLRTYNIGFNKIVSSGDDEGLSFITSLT-NSTHLNYLALDGNQFE  341 (929)
Q Consensus       297 ~~L~~L~L~~N~i~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~N~l~  341 (929)
                      ++|+.++++++.+..-+...   +...+. ..+.|++|.|.+|.++
T Consensus       241 ~~L~El~l~dcll~~~Ga~a---~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  241 PHLRELNLGDCLLENEGAIA---FVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             chheeecccccccccccHHH---HHHHHhccCCCCceeccCcchhH
Confidence            67777777777765544321   111121 1345555555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.79  E-value=1.1e-08  Score=124.54  Aligned_cols=148  Identities=30%  Similarity=0.341  Sum_probs=105.8

Q ss_pred             EEEEEcCCCCCccccCCCCCCCCCCCEEEeecCC--CCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           73 VIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNK--LSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        73 v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~--l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      |....+.++.+. .++.+.. .+.|++|-+..|.  +....++.|..++.|++||||+|.=-+.+|.++++|-+|++|+|
T Consensus       525 ~rr~s~~~~~~~-~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  525 VRRMSLMNNKIE-HIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             eeEEEEeccchh-hccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            444444455443 2332222 2379999999996  55344455788999999999998777799999999999999999


Q ss_pred             cccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccC--CCccCCccccCCCCce
Q 002376          151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL--AGTVPSTIYNMTSLVH  228 (929)
Q Consensus       151 s~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~  228 (929)
                      ++..++ .+|.. +++|+.|.+||+..+.--..        +|.....+++|++|.|-....  ....-..+.++..|+.
T Consensus       603 ~~t~I~-~LP~~-l~~Lk~L~~Lnl~~~~~l~~--------~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~  672 (889)
T KOG4658|consen  603 SDTGIS-HLPSG-LGNLKKLIYLNLEVTGRLES--------IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN  672 (889)
T ss_pred             cCCCcc-ccchH-HHHHHhhheecccccccccc--------ccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence            999998 78888 99999999999998853222        245566799999999876652  2233334455555555


Q ss_pred             EEee
Q 002376          229 LRLA  232 (929)
Q Consensus       229 L~Ls  232 (929)
                      +...
T Consensus       673 ls~~  676 (889)
T KOG4658|consen  673 LSIT  676 (889)
T ss_pred             heee
Confidence            5553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.77  E-value=4.5e-09  Score=84.45  Aligned_cols=59  Identities=36%  Similarity=0.527  Sum_probs=31.7

Q ss_pred             CccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCc
Q 002376          482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK  540 (929)
Q Consensus       482 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  540 (929)
                      +|++|++++|+++...+..|.++++|++|++++|+++...|..|..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34555555555554444455555555555555555555555555555555555555554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.72  E-value=1.6e-08  Score=81.17  Aligned_cols=60  Identities=32%  Similarity=0.434  Sum_probs=37.9

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcC
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI  413 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  413 (929)
                      +|++|++++|+|+...+.+|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            456666666666655556666666666666666666655555666666666666666653

...

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.67  E-value=1.8e-08  Score=116.00  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=49.6

Q ss_pred             EEEEEEecCCCCccccc--cccccccccHHH--HHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWI--HGERKNELDITS--ALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l--~~~~~~~~~ia~--aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~DfGla~~~~  793 (929)
                      .++||||++|+.+.++-  .........+++  +-.|+++....+++|+|+||.||+++.++    .+++.|||++..+.
T Consensus       236 ~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~  315 (537)
T PRK04750        236 TVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLN  315 (537)
T ss_pred             ceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECC
Confidence            58999999999998742  222111111221  11222222223999999999999999888    99999999998764


Q ss_pred             c
Q 002376          794 E  794 (929)
Q Consensus       794 ~  794 (929)
                      +
T Consensus       316 ~  316 (537)
T PRK04750        316 K  316 (537)
T ss_pred             H
Confidence            3

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.67  E-value=8.8e-10  Score=123.49  Aligned_cols=110  Identities=25%  Similarity=0.376  Sum_probs=47.3

Q ss_pred             hhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCC
Q 002376          476 EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL  555 (929)
Q Consensus       476 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  555 (929)
                      .+.-++.++.||||+|+++...  .+..|..|+.|||++|.+...+--....+. |+.|.|++|.++..  ..+.+|.+|
T Consensus       182 SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL  256 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSL  256 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhh
Confidence            3333444444455555444321  344445555555555555422222222222 55555555554421  234445555


Q ss_pred             CeEeCCCCcCcccCCCC--CCCCCCCcccccCCCCCc
Q 002376          556 RSLNLTFNNLEGVVPSE--GIFRNMSNVHLKGNPKLC  590 (929)
Q Consensus       556 ~~L~Ls~N~l~~~~p~~--~~~~~l~~l~l~~N~~~c  590 (929)
                      +.|||++|-|++.-.-.  ..+..+..+++.|||.-|
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            55555555554432111  123334445555555433

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=1.1e-08  Score=114.63  Aligned_cols=167  Identities=26%  Similarity=0.274  Sum_probs=117.9

Q ss_pred             CCCceeecc--cCceeEEeccc--cCc------------------HHHHHHHHHHHHccC-CccccceeeecccCCCCCc
Q 002376          663 FSHENLIGS--GSFGSVLHNER--TGS------------------WKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       663 ~~~~~~iG~--G~~g~Vy~~~~--~~~------------------~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~  719 (929)
                      |.....+|.  |.+|.||++..  ..+                  ...=.+|...-.+++ |+|.|+.+..+.+     .
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~-----~  190 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEG-----S  190 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCccccc-----C
Confidence            344567899  99999999887  311                  112235666566664 9999997776643     3


Q ss_pred             ceEEEEEEecCCCCcccccccccc---------ccccHHH----HHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEec
Q 002376          720 EFLALVYEFLSNGSLGDWIHGERK---------NELDITS----ALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGD  785 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~~---------~~~~ia~----aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~D  785 (929)
                      +..++-+|++. .++.++.+..-.         ...+..+    |+.++|+.   +++|-|+||.||....+ ..++..|
T Consensus       191 ~~lfiqtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~---~~~~~~~kp~~i~~~~~~~s~~~~d  266 (524)
T KOG0601|consen  191 GILFIQTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSN---NIVHDDLKPANIFTTSDWTSCKLTD  266 (524)
T ss_pred             Ccceeeecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCC---cccccccchhheecccccceeecCC
Confidence            44788889884 688777653221         1334455    99999998   89999999999999988 8999999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCC
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGE  840 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~  840 (929)
                      ||+...+........... .....|...|++||... +.++.++|++++|.+..+
T Consensus       267 f~~v~~i~~~~~~~~~~~-~~r~~~~~~Y~~ke~~~-~l~~~~~di~sl~ev~l~  319 (524)
T KOG0601|consen  267 FGLVSKISDGNFSSVFKV-SKRPEGDCIYAAKELLN-GLATFASDIFSLGEVILE  319 (524)
T ss_pred             cceeEEccCCccccceee-eecCCCCceEeChhhhc-cccchHhhhcchhhhhHh
Confidence            999987754322211111 12225777899999874 578999999999966544

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.59  E-value=8.9e-08  Score=92.00  Aligned_cols=96  Identities=25%  Similarity=0.296  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc-cccccHHHHHHHhhhCCCCCEEe
Q 002376          687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-KNELDITSALDYLHNDCEVPVVH  765 (929)
Q Consensus       687 ~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-~~~~~ia~aL~yLH~~~~~~iiH  765 (929)
                      ++-.+|++++++++--.|..-.=+..+.+     ...+||||++|..|.+.+...+ .....|-.-+.-||..   +|+|
T Consensus        44 ~Rt~~Earil~~a~~~GV~~P~v~dvD~~-----~~~I~me~I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~---givH  115 (204)
T COG3642          44 ERTRREARILAKAREAGVPVPIVYDVDPD-----NGLIVMEYIEGELLKDALEEARPDLLREVGRLVGKLHKA---GIVH  115 (204)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCeEEEEcCC-----CCEEEEEEeCChhHHHHHHhcchHHHHHHHHHHHHHHhc---Ceec
Confidence            45668999999886443322222222222     1479999999988988887552 3355666778889998   9999


Q ss_pred             cCCCCCCeeecCCCceEEeccccccc
Q 002376          766 SDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       766 rDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +|+.++||.+..+. +.+.|||++..
T Consensus       116 GDLTtsNiIl~~~~-i~~IDfGLg~~  140 (204)
T COG3642         116 GDLTTSNIILSGGR-IYFIDFGLGEF  140 (204)
T ss_pred             CCCccceEEEeCCc-EEEEECCcccc
Confidence            99999999998764 99999999874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.57  E-value=9.4e-10  Score=123.26  Aligned_cols=127  Identities=29%  Similarity=0.303  Sum_probs=95.9

Q ss_pred             cccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccc
Q 002376          274 NIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN  353 (929)
Q Consensus       274 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  353 (929)
                      .|...+.++|.+. .+..++.-++.|+.|||++|+++..         ..+..+++|++|||++|.+. .+|..-.... 
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-  232 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-  232 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---------HHHHhcccccccccccchhc-cccccchhhh-
Confidence            5777888888887 6677788888889999999988765         35677889999999999988 5665332223 


Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccC-ccccCCCCCCEEEecCCcCC
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIP-IEIGQLQGLQVLGLAGNEIP  414 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~  414 (929)
                      .|..|.+++|.++..  ..+.++++|+.|||++|-|++.-- ..++.|..|+.|+|.+|.+-
T Consensus       233 ~L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 KLQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hheeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            588999999988744  356788999999999998875321 22456677888888888774

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.56  E-value=7.9e-08  Score=117.20  Aligned_cols=128  Identities=24%  Similarity=0.276  Sum_probs=82.0

Q ss_pred             CcccEEEeecccCCCccCCccccCCCCceEEeeecC--CCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccE
Q 002376          200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ--LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQI  277 (929)
Q Consensus       200 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~--l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~  277 (929)
                      ...+...+-+|.+.. ++.... .++|++|-+..|.  +. .++..++..+|.|.+|+|++|.--+.+|..++++-+|++
T Consensus       523 ~~~rr~s~~~~~~~~-~~~~~~-~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEH-IAGSSE-NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhh-ccCCCC-CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            456666677776652 233222 2367777777775  33 566676777777777777777766777777777777777


Q ss_pred             EeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCC
Q 002376          278 IRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGN  338 (929)
Q Consensus       278 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  338 (929)
                      |+|++..++ .+|..+++|..|.+||+.++.-....       +.....+++|++|.+..-
T Consensus       600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-------~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-------PGILLELQSLRVLRLPRS  652 (889)
T ss_pred             ccccCCCcc-ccchHHHHHHhhheeccccccccccc-------cchhhhcccccEEEeecc
Confidence            777777777 67777777777777777665532221       122333566666655443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.52  E-value=4.7e-08  Score=109.64  Aligned_cols=226  Identities=19%  Similarity=0.090  Sum_probs=139.4

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc-------------C------cHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT-------------G------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~-------------~------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      ...+.+|.....||.|.|+.|++....             .      +...-..|+.+...+ .|.++++....+.....
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~  340 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ  340 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccc
Confidence            344568888999999999999874422             0      011122455555555 48888887776654332


Q ss_pred             CCcceEEEEEEecCCCCcccccc------c--cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEeccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIH------G--ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFG  787 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~------~--~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfG  787 (929)
                           .|+--|||++++......      .  ......+++.|+.++|+.   .++|+|+||+||++..+ +..++.|||
T Consensus       341 -----~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~d~~psni~i~~~~~~~~~~~~~  412 (524)
T KOG0601|consen  341 -----GYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSK---LFVHLDVKPSNILISNDGFFSKLGDFG  412 (524)
T ss_pred             -----ccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccch---hhhcccccccceeeccchhhhhccccc
Confidence                 578899999998765442      1  123356888999999976   89999999999999886 789999999


Q ss_pred             cccccccccCCCCCccccceeccccccc--cccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYV--PPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      ++..+.-.         .....++-+|+  +|+......+..++|++++|....+..+.......... +.. +......
T Consensus       413 ~~t~~~~~---------~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~-~~~-i~~~~~p  481 (524)
T KOG0601|consen  413 CWTRLAFS---------SGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ-SLT-IRSGDTP  481 (524)
T ss_pred             ccccccee---------cccccccccccccchhhccccccccccccccccccccccccCcccCccccc-cee-eeccccc
Confidence            98643211         11122334455  56666667789999999999665553332221111110 000 0000000


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      ..   .        +.....+.+......+++..||.+.+.....+-
T Consensus       482 ~~---~--------~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  482 NL---P--------GLKLQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             CC---C--------chHHhhhhhhhhhcCCccccchhhhhhcccchh
Confidence            00   0        000112225567888999999998877655443

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.48  E-value=3.1e-07  Score=87.73  Aligned_cols=118  Identities=24%  Similarity=0.296  Sum_probs=83.3

Q ss_pred             CceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          665 HENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       665 ~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ....|-+|+=+.|+++.+.+                      ..++..+|++.+.+++--.|.--.=++.+...     -
T Consensus        11 ~l~likQGAEArv~~~~~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~-----~   85 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYG-----G   85 (229)
T ss_pred             cceeeeccceeeEeeeccCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCC-----C
Confidence            35678889988888877652                      13467789999998864333222222322222     3


Q ss_pred             EEEEEecCC-CCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC---ceEEecccc
Q 002376          723 ALVYEFLSN-GSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---TAKVGDFGL  788 (929)
Q Consensus       723 ~lV~e~~~~-gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~---~~ki~DfGl  788 (929)
                      .++|||+++ .++.+++....          ..+..|-+.+.-||..   .|||+|+.++||++..++   .+.+.|||+
T Consensus        86 ~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~n---diiHGDLTTSNill~~~~~~~~~~lIdfgl  162 (229)
T KOG3087|consen   86 QIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDN---DIIHGDLTTSNILLRSDGNQITPILIDFGL  162 (229)
T ss_pred             eEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhC---CeecccccccceEEecCCCcCceEEEeecc
Confidence            799999976 36777765221          2245677889999998   899999999999997665   458999999


Q ss_pred             cc
Q 002376          789 AR  790 (929)
Q Consensus       789 a~  790 (929)
                      +.
T Consensus       163 s~  164 (229)
T KOG3087|consen  163 SS  164 (229)
T ss_pred             hh
Confidence            85

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=98.39  E-value=6.1e-08  Score=114.06  Aligned_cols=231  Identities=23%  Similarity=0.198  Sum_probs=141.1

Q ss_pred             hhCCCCCceeecccCceeEEeccccCcH-------------------HHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGSW-------------------KSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~~-------------------~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ..+++...+-+-+|+++.++-++-.+..                   +...++-.+.-..+||.+++...-+....    
T Consensus       802 S~d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rs----  877 (1205)
T KOG0606|consen  802 SPDGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRS----  877 (1205)
T ss_pred             CCccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCC----
Confidence            4456666777888999998866544221                   11112222222234566665544422222    


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                       -.++|++|..+|+|...++...        .....+..+.+|||..   .++|||+||.|.++..++..+++|||....
T Consensus       878 -P~~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~---~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~  953 (1205)
T KOG0606|consen  878 -PLPLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSS---LRKHRDLKPDSLLIAYDGHRPLTDFGTLSK  953 (1205)
T ss_pred             -CcchhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccc---hhhcccccccchhhcccCCcccCccccccc
Confidence             2699999999999999887433        2345677899999997   699999999999999999999999984432


Q ss_pred             ccc---ccCC----------------------CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHH
Q 002376          792 LLE---RVDN----------------------QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       792 ~~~---~~~~----------------------~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ..-   ....                      ...........||+.|.|||...+......+|.|+.|+.+++..+..-
T Consensus       954 vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~p 1033 (1205)
T KOG0606|consen  954 VGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIP 1033 (1205)
T ss_pred             cccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCC
Confidence            210   0000                      000112345679999999999999999999999999988877554433


Q ss_pred             hhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHH
Q 002376          847 VESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIR  904 (929)
Q Consensus       847 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~  904 (929)
                      .+...  ...++++..+...     ...+.....+..-+++++.+-+..+|.+|-.|.
T Consensus      1034 p~na~--tpq~~f~ni~~~~-----~~~p~g~~~~s~~aq~~~~~ll~~~~~qr~~a~ 1084 (1205)
T KOG0606|consen 1034 PFNAE--TPQQIFENILNRD-----IPWPEGPEEGSYEAQDLINRLLTEEPTQRLGAK 1084 (1205)
T ss_pred             CCCCc--chhhhhhccccCC-----CCCCCCccccChhhhhhhhhhhccCchhccCcc
Confidence            22211  1122222111111     111111112222333455577778888887655

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.30  E-value=2.3e-06  Score=97.14  Aligned_cols=115  Identities=23%  Similarity=0.326  Sum_probs=89.1

Q ss_pred             ecccCceeEEeccccCc--HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEecCCCCcccccccccc---
Q 002376          669 IGSGSFGSVLHNERTGS--WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK---  743 (929)
Q Consensus       669 iG~G~~g~Vy~~~~~~~--~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~---  743 (929)
                      -..|++-.||..+....  .....+.++.++.++||||++++..+..     .+..|+|+|-+.  -|..++++...   
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~-----~~~~ylvTErV~--Pl~~~lk~l~~~~v  106 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEE-----EGTLYLVTERVR--PLETVLKELGKEEV  106 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcc-----cCceEEEeeccc--cHHHHHHHhHHHHH
Confidence            34466667766555544  4556788889999999999999998744     335899999874  45555543322   


Q ss_pred             --ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          744 --NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       744 --~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                        ...||+.||.|||+.+  +++|++|.-..|.+++.|.-||++|-.+...
T Consensus       107 ~~Gl~qIl~AL~FL~~d~--~lvHgNv~~~SVfVn~~GeWkLggle~v~~~  155 (690)
T KOG1243|consen  107 CLGLFQILAALSFLNDDC--NLVHGNVCKDSVFVNESGEWKLGGLELVSKA  155 (690)
T ss_pred             HHHHHHHHHHHHHHhccC--CeeeccEeeeeEEEcCCCcEEEeeeEEEecc
Confidence              2578999999999875  8999999999999999999999999987643

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.28  E-value=1.9e-06  Score=89.49  Aligned_cols=123  Identities=21%  Similarity=0.252  Sum_probs=86.0

Q ss_pred             eeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCc--cccceeeecccCCCCCcceEEEEEEe
Q 002376          667 NLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHR--NLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hp--niv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      +.||.|..+.||+++...                ...++.+|+++++.+++.  .+.+++.+.....  ..+..++||||
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~--~~~~~~~v~e~   81 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPS--VLGTPFYVMER   81 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCC--ccCCceEEEEE
Confidence            567888888888754321                235688999999999763  4566777764322  11235899999


Q ss_pred             cCCCCcccccc-------ccccccccHHHHHHHhhhC-------------------------------------------
Q 002376          729 LSNGSLGDWIH-------GERKNELDITSALDYLHND-------------------------------------------  758 (929)
Q Consensus       729 ~~~gsL~~~l~-------~~~~~~~~ia~aL~yLH~~-------------------------------------------  758 (929)
                      ++++++.+.+.       ....++.++++++.+||+.                                           
T Consensus        82 i~G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (223)
T cd05154          82 VDGRVLRDRLLRPELSPEERRALARALADTLAALHSVDPAAVGLGDLGRPGGYLERQVARWRRQYDASRTDEPPAMERLL  161 (223)
T ss_pred             eCCEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCChhhcCCcccCCCCchHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            99998877652       1112345666667666642                                           


Q ss_pred             ----------CCCCEEecCCCCCCeeecC--CCceEEeccccccc
Q 002376          759 ----------CEVPVVHSDLKPGNILLDE--EMTAKVGDFGLARF  791 (929)
Q Consensus       759 ----------~~~~iiHrDlk~~NILl~~--~~~~ki~DfGla~~  791 (929)
                                ....++|+|++|.||++++  ++.+.|.||+.+..
T Consensus       162 ~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~~~iID~e~~~~  206 (223)
T cd05154         162 RWLEAHLPADSRPGLVHGDYRLGNVLFHPDEPRVVAVLDWELATL  206 (223)
T ss_pred             HHHHhhCCCCCCcEEEECCCCcccEEEcCCCCcEEEEEecccccc
Confidence                      1246899999999999998  66789999998874

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.26  E-value=1.4e-06  Score=87.22  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             HHHHHHHHccCC--ccccceeeecccCCCCCcceEEEEEEecCCCCccc-cccc-------cccccccHHHHHHHh-hhC
Q 002376          690 IAECETLRNVRH--RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD-WIHG-------ERKNELDITSALDYL-HND  758 (929)
Q Consensus       690 ~~E~~~l~~l~H--pniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~-~l~~-------~~~~~~~ia~aL~yL-H~~  758 (929)
                      .+|.+.|+++..  -++.+.+++.     +    -++||||+.++.+.. .+++       ......+++.+|.++ |..
T Consensus        74 ~kE~r~L~rl~~~Gv~vP~pi~~~-----~----~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~  144 (197)
T cd05146          74 EKEMHNLKRMQKAGIPCPEVVVLK-----K----HVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKEC  144 (197)
T ss_pred             HHHHHHHHHHHHcCCCCCeEEEec-----C----CEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhC
Confidence            389999999853  3555666542     1    489999997643321 1211       112346788999988 666


Q ss_pred             CCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       759 ~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                         ++||+|+++.||++++ +.+.++|||.|-..
T Consensus       145 ---glVHGDLs~~NIL~~~-~~v~iIDF~qav~~  174 (197)
T cd05146         145 ---NLVHADLSEYNMLWHD-GKVWFIDVSQSVEP  174 (197)
T ss_pred             ---CeecCCCCHHHEEEEC-CcEEEEECCCceeC
Confidence               9999999999999974 68999999988643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=1e-07  Score=96.72  Aligned_cols=45  Identities=27%  Similarity=0.328  Sum_probs=24.9

Q ss_pred             CCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCcccc
Q 002376          292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEG  342 (929)
Q Consensus       292 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  342 (929)
                      .+..++++..|+|+.|+|.+.      ..+.++..+++|..|.+++|.+..
T Consensus       219 ~se~~p~~~~LnL~~~~idsw------asvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  219 GSEPFPSLSCLNLGANNIDSW------ASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             cCCCCCcchhhhhcccccccH------HHHHHHcCCchhheeeccCCcccc
Confidence            344455555666666665432      223455566666666666666653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=3.4e-07  Score=82.73  Aligned_cols=104  Identities=27%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             cccEEEecCCccccccCCC---CCCCCcccEEEeeCCCCCcccCccccC-CCCCCEEEecCCcCCCCCcccccCCCCCce
Q 002376          354 ELSKLYLGGNHIYGKIPAS---IGRLRSLTLLDLSYNSISGEIPIEIGQ-LQGLQVLGLAGNEIPGGIPNSLANLKKLNQ  429 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  429 (929)
                      .+..++|++++|. -+++.   +.....|+..+|++|.+. .+|..|.. .+.+++|+|++|+|+ .+|..++.++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            3555666666553 12222   223334444555555555 23333322 234455555555554 23444555555555


Q ss_pred             ecccCcccccccCcccccccccceecccCCcC
Q 002376          430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRI  461 (929)
Q Consensus       430 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  461 (929)
                      |+++.|.+. ..|..+..+.+|-.|+..+|.+
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence            555555554 2333333344444444444443

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.09  E-value=7.2e-06  Score=81.78  Aligned_cols=93  Identities=22%  Similarity=0.231  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHHccCCc--cccceeeecccCCCCCcceEEEEEEecC--CCCcccccccc------ccccccHHHHHHHh
Q 002376          686 WKSFIAECETLRNVRHR--NLVKLITSCSSLDSKNMEFLALVYEFLS--NGSLGDWIHGE------RKNELDITSALDYL  755 (929)
Q Consensus       686 ~~~~~~E~~~l~~l~Hp--niv~l~~~~~~~~~~~~~~~~lV~e~~~--~gsL~~~l~~~------~~~~~~ia~aL~yL  755 (929)
                      .....+|.+.|.++..-  ++.+.+++.     +    -++||||++  +..+..+....      .....++...+..+
T Consensus        52 ~~~~~~E~~~L~~l~~~Gv~vP~p~~~~-----~----~~ivME~I~~~G~~~~~l~~~~~~~~~~~~~~~~il~~~~~~  122 (188)
T PF01163_consen   52 REWAKKEFRNLKRLYEAGVPVPKPYDYN-----R----NVIVMEYIGEDGVPLPRLKDVDLSPEEPKELLEEILEEIIKM  122 (188)
T ss_dssp             HHHHHHHHHHHHHCCCTT-SS--EEEEE-----T----TEEEEE--EETTEEGGCHHHCGGGGSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCccCCcEEEEe-----C----CEEEEEecCCCccchhhHHhccccchhHHHHHHHHHHHHHHH
Confidence            35677899999999765  455666553     1    389999998  44443332211      12244566655554


Q ss_pred             -hhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          756 -HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       756 -H~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                       |..   +|+|+|+.+.||+++++ .+.|.|||.|..
T Consensus       123 ~~~~---givHGDLs~~NIlv~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen  123 LHKA---GIVHGDLSEYNILVDDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             HHCT---TEEESS-STTSEEEETT-CEEE--GTTEEE
T ss_pred             HHhc---CceecCCChhhEEeecc-eEEEEecCccee
Confidence             565   99999999999999988 999999998864

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.07  E-value=4.5e-06  Score=88.43  Aligned_cols=101  Identities=15%  Similarity=0.113  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHccCCcc--ccceeeecccCCCCCcceEEEEEEecCCC-Cccccccc----------cccccccHHHHHHH
Q 002376          688 SFIAECETLRNVRHRN--LVKLITSCSSLDSKNMEFLALVYEFLSNG-SLGDWIHG----------ERKNELDITSALDY  754 (929)
Q Consensus       688 ~~~~E~~~l~~l~Hpn--iv~l~~~~~~~~~~~~~~~~lV~e~~~~g-sL~~~l~~----------~~~~~~~ia~aL~y  754 (929)
                      .+.+|...+.++..-.  +.+.+++...........-++|||++++. +|.+++..          .+.+..+++..+.-
T Consensus        74 ~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~  153 (268)
T PRK15123         74 GADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRD  153 (268)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHH
Confidence            4778999888885333  33444454322111123468999999876 78887642          11234578999999


Q ss_pred             hhhCCCCCEEecCCCCCCeeecC-------CCceEEeccccccc
Q 002376          755 LHNDCEVPVVHSDLKPGNILLDE-------EMTAKVGDFGLARF  791 (929)
Q Consensus       755 LH~~~~~~iiHrDlk~~NILl~~-------~~~~ki~DfGla~~  791 (929)
                      ||..   +|+|+|++++|||++.       ++.+.++||+.++.
T Consensus       154 LH~~---Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~~  194 (268)
T PRK15123        154 MHAA---GINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQI  194 (268)
T ss_pred             HHHC---cCccCCCChhhEEEeccccCCCCCceEEEEECCcccc
Confidence            9998   9999999999999975       46899999998863

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=9.7e-07  Score=89.85  Aligned_cols=119  Identities=29%  Similarity=0.353  Sum_probs=67.8

Q ss_pred             CCCCcCCCCCCCCcEEeCCCCCCCCCcc-ccc-ccccccceecccccccCCCCCh--hhhccCCCCcEEEccccccCCCC
Q 002376          109 GNLPREIGNLFRLRVLNISFNNLQGELP-VNI-SKLTELKMLDLMANKITGRVTD--DQLRNLRSLQVLNFGKNLLWGSI  184 (929)
Q Consensus       109 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~-~~l~~L~~L~Ls~N~l~~~i~~--~~~~~l~~L~~L~Ls~N~l~~~~  184 (929)
                      |..+-.+..+.-++.|-+.+..|..+-- ..| ...+.+++|||.+|+|+ ...+  ..+.+|+.|++|+|+.|.+...|
T Consensus        35 g~s~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iS-dWseI~~ile~lP~l~~LNls~N~L~s~I  113 (418)
T KOG2982|consen   35 GLSYLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLIS-DWSEIGAILEQLPALTTLNLSCNSLSSDI  113 (418)
T ss_pred             ccceeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhc-cHHHHHHHHhcCccceEeeccCCcCCCcc
Confidence            3333344444455566666666653211 123 34577888888888887 2211  12467788888888888775443


Q ss_pred             CccccccCCCccCCCCcccEEEeecccCCCc-cCCccccCCCCceEEeeecCC
Q 002376          185 PPSIANLIPSDLSRLENLKVLDLTINRLAGT-VPSTIYNMTSLVHLRLASNQL  236 (929)
Q Consensus       185 p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l  236 (929)
                      -    .+ |   ..+.+|++|-|.+..+.-. ....+..++.+++|.+|.|.+
T Consensus       114 ~----~l-p---~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~  158 (418)
T KOG2982|consen  114 K----SL-P---LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL  158 (418)
T ss_pred             c----cC-c---ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence            2    11 1   2356777777777666533 223445566666666666643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=3.3e-07  Score=82.76  Aligned_cols=87  Identities=24%  Similarity=0.365  Sum_probs=42.4

Q ss_pred             CccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCC
Q 002376          482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT  561 (929)
Q Consensus       482 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  561 (929)
                      .++.|+|++|.++ .+|..+..++.|+.|+++.|.|. ..|..+..|.+|-.||.-+|.+. .+|..+-.-+.....++.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lg  154 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLG  154 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhc
Confidence            4444555555554 34555555555555555555555 34444444555555555555554 333332222222333445


Q ss_pred             CCcCcccCCC
Q 002376          562 FNNLEGVVPS  571 (929)
Q Consensus       562 ~N~l~~~~p~  571 (929)
                      ++.+.+.-+.
T Consensus       155 nepl~~~~~~  164 (177)
T KOG4579|consen  155 NEPLGDETKK  164 (177)
T ss_pred             CCcccccCcc
Confidence            5555554443

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.04  E-value=1.4e-06  Score=97.86  Aligned_cols=160  Identities=20%  Similarity=0.130  Sum_probs=113.1

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccCc----------HHHHHHHHHHHHccCCcc-ccceeeecccCCCCCcceEEEE
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTGS----------WKSFIAECETLRNVRHRN-LVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~----------~~~~~~E~~~l~~l~Hpn-iv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      +..+.-+..-+-.++|+++++||.+....          .....-++++|.+++||| .|+.++-+     ..+.+.+++
T Consensus       238 kDk~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~-----~~E~~~~i~  312 (829)
T KOG0576|consen  238 KDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDY-----DGEDYLWIP  312 (829)
T ss_pred             cCCccchHHHHHHHHHHhcCCCccCCChhhheeceeeccchhhHHHHHHHHHccCCCCcccccccC-----Ccccccchh
Confidence            33444444456678999999999887622          234456889999999999 55444443     345568999


Q ss_pred             EEecCCC-Ccccccc---------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNG-SLGDWIH---------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~g-sL~~~l~---------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++|+..| +-..-..         +.......-+++++|+|+.   .=+|||    ||+..+ +..|..||+....+.+.
T Consensus       313 ~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~---~~~~~d----~~l~s~-~~~~~~~~~v~~~L~~~  384 (829)
T KOG0576|consen  313 MRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSS---YKVHRD----NILGSE-EEVKLLDFAVPPQLTRT  384 (829)
T ss_pred             hhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccccccccc---cccCcc----cccccc-cccccccccCCcccCcc
Confidence            9999887 2222111         0111123346789999986   458999    777665 68899999998877533


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcC
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSES  836 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~  836 (929)
                      .       ......+|+.|+|||+.....+..+.|+|+.+.
T Consensus       385 ~-------~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~  418 (829)
T KOG0576|consen  385 M-------KPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAV  418 (829)
T ss_pred             c-------ccccCCCCCCCCCchhhcccccccCCCccCCCc
Confidence            2       234467999999999999999999999999885

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.02  E-value=4.2e-06  Score=95.40  Aligned_cols=149  Identities=16%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             ccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC---CCCccccceeccccccccccccCC
Q 002376          746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN---QSSISSTHVFMGSIGYVPPEYGLG  822 (929)
Q Consensus       746 ~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~---~~~~~~~~~~~gt~~y~aPE~~~~  822 (929)
                      .+++.|+.|+|..  .++||++|.|++|.++..+..||+.|+.+....+...-   ........-..-...|.|||++.+
T Consensus       106 ~~v~dgl~flh~s--Ak~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~  183 (700)
T KOG2137|consen  106 GNVADGLAFLHRS--AKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLG  183 (700)
T ss_pred             hcccchhhhhccC--cceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhcc
Confidence            4566899999986  48999999999999999999999999987654321110   000001111123457999999999


Q ss_pred             CCCCCCCCCCCCcCCCCCcc-hhHHhhhcCCc----hhhhc-cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCC
Q 002376          823 ERPSTAGDVPTSESFAGEFN-IVKWVESNLPE----NVLQV-LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTES  896 (929)
Q Consensus       823 ~~~~~~~DV~s~g~~~~~~~-~~~~~~~~~~~----~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~d  896 (929)
                      ...+.++|++|+|+..|-+. -+.|.......    ..... .+..... +.  .    ..++.+.+-++    +.+..+
T Consensus       184 ~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~~~~~~~~~~~~~-~s--~----~~p~el~~~l~----k~l~~~  252 (700)
T KOG2137|consen  184 TTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYSFSRNLLNAGAFG-YS--N----NLPSELRESLK----KLLNGD  252 (700)
T ss_pred             ccccccccceeeeeEEEEEecCCcchhhccCCcchhhhhhccccccccc-cc--c----cCcHHHHHHHH----HHhcCC
Confidence            88999999999998766543 44554443322    11111 1111111 11  1    11122333333    777899


Q ss_pred             CCCCCCHHHHH
Q 002376          897 PGGRIGIREAL  907 (929)
Q Consensus       897 P~~RPs~~ev~  907 (929)
                      +..||++.++.
T Consensus       253 ~~~rp~~~~l~  263 (700)
T KOG2137|consen  253 SAVRPTLDLLL  263 (700)
T ss_pred             cccCcchhhhh
Confidence            99999877754

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.92  E-value=1.7e-05  Score=81.33  Aligned_cols=101  Identities=22%  Similarity=0.258  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHccCCc--cccceeeecccCCCCCcceEEEEEEecCCC-Cccccccc--------cccccccHHHHHHHh
Q 002376          687 KSFIAECETLRNVRHR--NLVKLITSCSSLDSKNMEFLALVYEFLSNG-SLGDWIHG--------ERKNELDITSALDYL  755 (929)
Q Consensus       687 ~~~~~E~~~l~~l~Hp--niv~l~~~~~~~~~~~~~~~~lV~e~~~~g-sL~~~l~~--------~~~~~~~ia~aL~yL  755 (929)
                      ..+.+|...+.++...  .+.+.+++........ ...++|+|++++. +|.+++..        .+....+++..++-|
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~-~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~l  134 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGG-YRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKL  134 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCc-eeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence            4577888887777533  3445555554433222 4468999999874 78888764        123456789999999


Q ss_pred             hhCCCCCEEecCCCCCCeeecCCC---ceEEeccccccc
Q 002376          756 HNDCEVPVVHSDLKPGNILLDEEM---TAKVGDFGLARF  791 (929)
Q Consensus       756 H~~~~~~iiHrDlk~~NILl~~~~---~~ki~DfGla~~  791 (929)
                      |..   +|+|+|+++.|||++.+.   .+.+.||+-++.
T Consensus       135 H~~---gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~~  170 (206)
T PF06293_consen  135 HDA---GIYHGDLNPSNILVDPDDGQYRFYLIDLDRMRF  170 (206)
T ss_pred             HHC---cCCCCCCCcccEEEeCCCCceeEEEEcchhcee
Confidence            998   999999999999999886   899999998774

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.88  E-value=7e-06  Score=60.42  Aligned_cols=36  Identities=36%  Similarity=0.595  Sum_probs=14.9

Q ss_pred             CCcEEeCCCCCCCCCcccccccccccceecccccccC
Q 002376          120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKIT  156 (929)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  156 (929)
                      +|++|+|++|+|+ .+|..|++|++|++|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23333444444444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	929
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-51
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		6e-12
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-51
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-12
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-20
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-20
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-17
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-06
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		1e-14
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-14
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		6e-12
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		1e-11
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		3e-11
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-11
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-11
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		4e-11
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		4e-11
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		4e-11
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		4e-11
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		4e-11
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		5e-11
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		5e-11
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		6e-11
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		6e-11
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		6e-11
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		7e-11
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		7e-11
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		7e-11
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		8e-11
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		8e-11
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		8e-11
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		8e-11
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-10
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		1e-10
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		1e-10
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		2e-10
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		2e-10
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		2e-10
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		2e-10
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-10
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		4e-10
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		4e-10
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		5e-10
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-10
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		5e-10
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		6e-10
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		7e-10
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		7e-10
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		8e-10
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		8e-10
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		9e-10
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		9e-10
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		9e-10
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		9e-10
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		1e-09
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		1e-09
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		1e-09
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		1e-09
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		1e-09
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		1e-09
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		1e-09
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-09
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		1e-09
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-09
4h58_A	275	Braf In Complex With Compound 3 Length = 275		1e-09
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		1e-09
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		1e-09
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		1e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-09
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		1e-09
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		1e-09
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		1e-09
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		1e-09
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-09
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		2e-09
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		2e-09
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		2e-09
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		2e-09
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		2e-09
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		2e-09
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		2e-09
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-09
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		2e-09
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		3e-09
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		3e-09
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		3e-09
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		3e-09
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		3e-09
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		3e-09
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		3e-09
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		4e-09
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		4e-09
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		4e-09
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		4e-09
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		4e-09
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		4e-09
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		4e-09
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		5e-09
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		5e-09
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		5e-09
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		6e-09
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		6e-09
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-09
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		9e-09
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		9e-09
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		9e-09
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		9e-09
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		9e-09
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		9e-09
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		9e-09
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		1e-08
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		1e-08
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		1e-08
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		1e-08
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-08
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		2e-08
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		2e-08
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		2e-08
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		2e-08
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		2e-08
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-08
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-08
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		2e-08
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-08
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-08
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		2e-08
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		2e-08
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-08
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		2e-08
2pl0_A	289	Lck Bound To Imatinib Length = 289		2e-08
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-08
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-08
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		2e-08
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		2e-08
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		2e-08
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		3e-08
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		3e-08
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		3e-08
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		3e-08
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		3e-08
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		3e-08
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		3e-08
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		3e-08
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		3e-08
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		3e-08
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		3e-08
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		4e-08
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		5e-08
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		5e-08
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		5e-08
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-08
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		5e-08
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		5e-08
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		5e-08
3ocb_A	341	Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor		5e-08
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		5e-08
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		5e-08
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		5e-08
4ejn_A	446	Crystal Structure Of Autoinhibited Form Of Akt1 In		6e-08
3o96_A	446	Crystal Structure Of Human Akt1 With An Allosteric		6e-08
3cqu_A	342	Crystal Structure Of Akt-1 Complexed With Substrate		6e-08
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		6e-08
4gv1_A	340	Pkb Alpha In Complex With Azd5363 Length = 340		7e-08
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		7e-08
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		7e-08
3eyg_A	290	Crystal Structures Of Jak1 And Jak2 Inhibitor Compl		8e-08
4e4l_A	302	Jak1 Kinase (Jh1 Domain) In Complex With Compound 3		8e-08
2r5t_A	373	Crystal Structure Of Inactive Serum And Glucocortic		8e-08
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-08
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		8e-08
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		9e-08
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		1e-07
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		1e-07
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		1e-07
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		1e-07
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		1e-07
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		1e-07
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-07
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-07
1gzk_A	315	Molecular Mechanism For The Regulation Of Protein K		2e-07
1mrv_A	339	Crystal Structure Of An Inactive Akt2 Kinase Domain		2e-07
1gzn_A	335	Structure Of Pkb Kinase Domain Length = 335		2e-07
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-07
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-07
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-07
1o6k_A	336	Structure Of Activated Form Of Pkb Kinase Domain S4		2e-07
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-07
3e87_A	335	Crystal Structures Of The Kinase Domain Of Akt2 In		2e-07
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		2e-07
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		2e-07
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-07
2p0c_A	313	Catalytic Domain Of The Proto-Oncogene Tyrosine-Pro		2e-07
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		3e-07
2jdo_A	342	Structure Of Pkb-Beta (Akt2) Complexed With Isoquin		3e-07
1o6l_A	337	Crystal Structure Of An Activated Akt/protein Kinas		3e-07
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		3e-07
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		3e-07
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		3e-07
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		3e-07
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		4e-07
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		4e-07
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		4e-07
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		4e-07
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		5e-07
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		5e-07
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		5e-07
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		5e-07
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		5e-07
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		6e-07
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		6e-07
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		6e-07
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		7e-07
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		8e-07
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		8e-07
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		8e-07
3g51_A	325	Structural Diversity Of The Active Conformation Of		1e-06
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-06
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		1e-06
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		1e-06
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		1e-06
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		1e-06
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		1e-06
1y8g_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		1e-06
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-06
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-06
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		1e-06
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-06
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		1e-06
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		1e-06
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		1e-06
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-06
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-06
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-06
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-06
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		2e-06
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		2e-06
3a60_A	327	Crystal Structure Of Unphosphorylated P70s6k1 (Form		2e-06
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		2e-06
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		2e-06
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-06
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		2e-06
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		2e-06
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		2e-06
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		2e-06
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		2e-06
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		2e-06
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		2e-06
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		2e-06
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		2e-06
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		2e-06
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-06
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		2e-06
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		2e-06
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		2e-06
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		2e-06
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		2e-06
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		2e-06
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		2e-06
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-06
3a62_A	327	Crystal Structure Of Phosphorylated P70s6k1 Length		2e-06
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		2e-06
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		2e-06
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		2e-06
3hec_A	348	P38 In Complex With Imatinib Length = 348		2e-06
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		2e-06
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		2e-06
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		2e-06
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		2e-06
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		3e-06
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		3e-06
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		3e-06
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-06
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		3e-06
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		3e-06
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		3e-06
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		3e-06
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		3e-06
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		3e-06
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		3e-06
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		3e-06
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		3e-06
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		3e-06
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		3e-06
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		3e-06
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		3e-06
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		4e-06
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		4e-06
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		4e-06
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		4e-06
2ac5_A	316	Structure Of Human Mnk2 Kinase Domain Mutant D228g		4e-06
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		4e-06
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		4e-06
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		4e-06
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-06
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		4e-06
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		4e-06
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		4e-06
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		5e-06
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		5e-06
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		5e-06
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		5e-06
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		6e-06
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		6e-06
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		6e-06
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		6e-06
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		8e-06
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		8e-06
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		8e-06
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		8e-06
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		9e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		9e-06
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		1e-05
4fie_A	423	Full-Length Human Pak4 Length = 423		1e-05
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		1e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		1e-05
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		1e-05
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		1e-05
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		1e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-05
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		2e-05
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		2e-05
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-05
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-05
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		2e-05
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		2e-05
3cc6_A	281	Crystal Structure Of Kinase Domain Of Protein Tyros		2e-05
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		2e-05
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		2e-05
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-05
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		2e-05
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		2e-05
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		2e-05
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-05
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		2e-05
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		2e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		2e-05
2ac3_A	316	Structure Of Human Mnk2 Kinase Domain Length = 316		2e-05
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		2e-05
4exu_A	371	Mapk13, Inactive Form Length = 371		2e-05
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		2e-05
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		2e-05
3g2f_A	336	Crystal Structure Of The Kinase Domain Of Bone Morp		2e-05
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-05
3bhh_A	295	Crystal Structure Of Human Calcium/calmodulin-depen		3e-05
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		3e-05
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		3e-05
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		3e-05
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		3e-05
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		3e-05
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		3e-05
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		3e-05
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		3e-05
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		3e-05
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		3e-05
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		3e-05
2oza_B	366	Structure Of P38alpha Complex Length = 366		3e-05
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-05
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		3e-05
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		3e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		3e-05
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		3e-05
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		3e-05
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		3e-05
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		3e-05
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		3e-05
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		3e-05
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		3e-05
3kl8_A	269	Camkiintide Inhibitor Complex Length = 269		3e-05
3kk9_A	282	Camkii Substrate Complex B Length = 282		3e-05
3kk8_A	284	Camkii Substrate Complex A Length = 284		3e-05
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		3e-05
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		3e-05
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		3e-05
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		3e-05
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		3e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		3e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		3e-05
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		3e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		3e-05
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		3e-05
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		3e-05
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		3e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		3e-05
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		4e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-05
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		4e-05
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		4e-05
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		4e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		4e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		4e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		4e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		4e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		4e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		4e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		4e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		4e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		4e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		4e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		4e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		4e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		4e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		4e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		4e-05
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		4e-05
2wtk_C	305	Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo2		4e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
2vn9_A	301	Crystal Structure Of Human Calcium Calmodulin Depen		4e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		5e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		5e-05
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		5e-05
2wel_A	327	Crystal Structure Of Su6656-Bound CalciumCALMODULIN		5e-05
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		5e-05
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		5e-05
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		5e-05
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		5e-05
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		5e-05
1tki_A	321	Autoinhibited Serine Kinase Domain Of The Giant Mus		5e-05
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		5e-05
2z7x_B	520	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		5e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		6e-05
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		6e-05
2x7f_A	326	Crystal Structure Of The Kinase Domain Of Human Tra		6e-05
2bdw_A	362	Crystal Structure Of The Auto-Inhibited Kinase Doma		6e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-05
4dc2_A	396	Structure Of Pkc In Complex With A Substrate Peptid		6e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		6e-05
3txo_A	353	Pkc Eta Kinase In Complex With A Naphthyridine Leng		7e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		7e-05
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		7e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		7e-05
1b6c_B	342	Crystal Structure Of The Cytoplasmic Domain Of The		7e-05
1py5_A	326	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		7e-05
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		7e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		7e-05
2v7o_A	336	Crystal Structure Of Human Calcium-Calmodulin-Depen		7e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		7e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		7e-05
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		7e-05
1zrz_A	364	Crystal Structure Of The Catalytic Domain Of Atypic		7e-05
2x4f_A	373	The Crystal Structure Of The Human Myosin Light Cha		7e-05
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		7e-05
2j51_A	325	Crystal Structure Of Human Ste20-Like Kinase Bound		7e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		8e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		8e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		8e-05
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		8e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		9e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		9e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		9e-05
3zh8_A	349	A Novel Small Molecule Apkc Inhibitor Length = 349		9e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-05
2jfl_A	325	Crystal Structure Of Human Ste20-Like Kinase ( Diph		9e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		1e-04
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		1e-04
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		1e-04
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		1e-04
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		1e-04
3a8w_A	345	Crystal Structure Of Pkciota Kinase Domain Length =		1e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		1e-04
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		1e-04
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-04
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		1e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		1e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-04
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		1e-04
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		1e-04
1fvr_A	327	Tie2 Kinase Domain Length = 327		1e-04
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		1e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		1e-04
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		1e-04
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		1e-04
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		1e-04
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-04
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-04
2jfm_A	325	Crystal Structure Of Human Ste20-Like Kinase (Unlig		1e-04
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		1e-04
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		1e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-04
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-04
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		1e-04
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-04
2pml_X	348	Crystal Structure Of Pfpk7 In Complex With An Atp A		1e-04
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		2e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		2e-04
1rw8_A	301	Crystal Structure Of Tgf-Beta Receptor I Kinase Wit		2e-04
1vjy_A	303	Crystal Structure Of A Naphthyridine Inhibitor Of H		2e-04
3tzm_A	309	Tgf-Beta Receptor Type 1 In Complex With Sb431542 L		2e-04
2wot_A	306	Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)		2e-04
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		2e-04
3rg1_A	612	Crystal Structure Of The Rp105MD-1 Complex Length =		2e-04
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		2e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		2e-04
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		2e-04
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		2e-04
4bc6_A	293	Crystal Structure Of Human Serine Threonine Kinase-		2e-04
2j7t_A	302	Crystal Structure Of Human Serine Threonine Kinase-		2e-04
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		2e-04
3fpq_A	290	Crystal Structure Of The Kinase Domain Of Wnk1 Leng		2e-04
3a79_B	562	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-04
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		2e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		3e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		3e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		3e-04
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		3e-04
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		3e-04
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		3e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		3e-04
2vz6_A	313	Structure Of Human Calcium Calmodulin Dependent Pro		3e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		3e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		3e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		3e-04
2uv2_A	287	Crystal Structure Of Human Ste20-Like Kinase Bound		3e-04
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		3e-04
3mdy_A	337	Crystal Structure Of The Cytoplasmic Domain Of The		4e-04
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		4e-04
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		4e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-04
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		4e-04
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		4e-04
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		4e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		4e-04
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		4e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-04
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		4e-04
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		4e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		5e-04
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		5e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		5e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		5e-04
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		5e-04
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		5e-04
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		5e-04
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		5e-04
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		5e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		5e-04
2j0l_A	276	Crystal Structure Of A The Active Conformation Of T		5e-04
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		5e-04
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		5e-04
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		5e-04
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		6e-04
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		6e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		6e-04
2jkm_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		6e-04
2j0m_B	276	Crystal Structure A Two-Chain Complex Between The F		6e-04
4ebw_A	304	Structure Of Focal Adhesion Kinase Catalytic Domain		6e-04
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-04
1mp8_A	281	Crystal Structure Of Focal Adhesion Kinase (Fak) Le		7e-04
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		7e-04
3bz3_A	276	Crystal Structure Analysis Of Focal Adhesion Kinase		7e-04
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		7e-04
3pxk_A	282	Focal Adhesion Kinase Catalytic Domain In Complex W		7e-04
2etm_A	281	Crystal Structure Of Focal Adhesion Kinase Domain C		7e-04
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		8e-04
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		8e-04
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		8e-04
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		8e-04
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		8e-04
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		8e-04
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		8e-04
2jkk_A	276	Focal Adhesion Kinase Catalytic Domain In Complex W		8e-04
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  201 bits (512), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 177/567 (31%), Positives = 265/567 (46%), Gaps = 66/567 (11%)
Query: 89  PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKML 148
           P +G+ S L+ + +  NKLSG+  R I     L++LNIS N   G +P     L  L+ L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 149 DLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPP----------------SIANLI 192
            L  NK TG + D       +L  L+   N  +G++PP                + +  +
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 193 PSD-LSRLENLKVLDLTINRLAGTVPSTIYNMT-SLVHLRLASNQLGGEIPYDVRDTLPN 250
           P D L ++  LKVLDL+ N  +G +P ++ N++ SL+ L L+SN   G I  ++     N
Sbjct: 332 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 391
Query: 251 LLDFIYCFNR-FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI 309
            L  +Y  N  FTGKIP +L N + +  + ++ N L GT+P  LG+L  LR   +  N +
Sbjct: 392 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 451
Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
                 E L ++ +L        L LD N   G+IP  + N +N L+ + L  N + G+I
Sbjct: 452 EGEIPQE-LMYVKTLET------LILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEI 503
Query: 370 PASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQ 429
           P  IGRL +L +L LS NS SG IP E+             N   G IP ++   K+  +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGK 561
Query: 430 IDLSGNELTGEIPISFGN---------------FQSLLSIDLSNNRINGNIPKGILRPL- 473
           I  + N + G+  +   N               FQ + S  L  NR++   P  I   + 
Sbjct: 562 I--AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVY 617
Query: 474 ----PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK 529
                       +++ +D+S N LSG +P  + +   L  L + +N  SG IP+ V +L+
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 677
Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
           GL +LDLSSNKL G IP  +  L  L  ++L+ NNL G +P  G F          NP L
Sbjct: 678 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 737
Query: 590 C-----------LQLGCENPRSHGSRL 605
           C                 + RSHG RL
Sbjct: 738 CGYPLPRCDPSNADGYAHHQRSHGRRL 764

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 64/255 (25%)
Query: 367 GKIPASIGRLRSLTLLDLSYNSISG-------------------------EIPIEIXXXX 401
           GK+   + +L SL +LDLS NSISG                            +++    
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 402 XXXXXXXXXNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI 461
                    N    GIP  L +   L  +D+SGN+L+G+   +      L  +++S+N+ 
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 462 NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN-CKSLEELLMAYNQFSGP 520
            G IP     PLP     L+++  + L++N  +G +P+ L   C +L  L ++ N F G 
Sbjct: 257 VGPIP-----PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 521 IP-------------------------NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQA- 554
           +P                         + + +++GL+VLDLS N+ SG +P  L NL A 
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 366
Query: 555 LRSLNLTFNNLEGVV 569
           L +L+L+ NN  G +
Sbjct: 367 LLTLDLSSNNFSGPI 381

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 171/541 (31%), Positives = 258/541 (47%), Gaps = 55/541 (10%)
Query: 89  PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKML 148
           P +G+ S L+ + +  NKLSG+  R I     L++LNIS N   G +P     L  L+ L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 149 DLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPP----------------SIANLI 192
            L  NK TG + D       +L  L+   N  +G++PP                + +  +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 193 PSD-LSRLENLKVLDLTINRLAGTVPSTIYNMT-SLVHLRLASNQLGGEIPYDVRDTLPN 250
           P D L ++  LKVLDL+ N  +G +P ++ N++ SL+ L L+SN   G I  ++     N
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 251 LLDFIYCFNR-FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI 309
            L  +Y  N  FTGKIP +L N + +  + ++ N L GT+P  LG+L  LR   +  N +
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
                 E L ++ +L        L LD N   G+IP  + N +N L+ + L  N + G+I
Sbjct: 455 EGEIPQE-LMYVKTLET------LILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEI 506
Query: 370 PASIGRLRSLTLLDLSYNSISGEIPIEIXXXXXXXXXXXXXNEIPGGIPNSLANLKKLNQ 429
           P  IGRL +L +L LS NS SG IP E+             N   G IP ++   K+  +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGK 564
Query: 430 IDLSGNELTGEIPISFGN---------------FQSLLSIDLSNNRINGNIPKGILRPL- 473
           I  + N + G+  +   N               FQ + S  L  NR++   P  I   + 
Sbjct: 565 I--AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL--NRLSTRNPCNITSRVY 620
Query: 474 ----PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK 529
                       +++ +D+S N LSG +P  + +   L  L + +N  SG IP+ V +L+
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680
Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
           GL +LDLSSNKL G IP  +  L  L  ++L+ NNL G +P  G F          NP L
Sbjct: 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740
Query: 590 C 590
           C
Sbjct: 741 C 741

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 113/255 (44%), Gaps = 64/255 (25%)
Query: 367 GKIPASIGRLRSLTLLDLSYNSISG-------------------------EIPIEIXXXX 401
           GK+   + +L SL +LDLS NSISG                            +++    
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 402 XXXXXXXXXNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI 461
                    N    GIP  L +   L  +D+SGN+L+G+   +      L  +++S+N+ 
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 462 NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN-CKSLEELLMAYNQFSGP 520
            G IP     PLP     L+++  + L++N  +G +P+ L   C +L  L ++ N F G 
Sbjct: 260 VGPIP-----PLP-----LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 521 IP-------------------------NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQA- 554
           +P                         + + +++GL+VLDLS N+ SG +P  L NL A 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369
Query: 555 LRSLNLTFNNLEGVV 569
           L +L+L+ NN  G +
Sbjct: 370 LLTLDLSSNNFSGPI 384

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 133/311 (42%), Gaps = 71/311 (22%)
Query: 650 KISYDELRRATGNFSHENLIGSGSFGSV---------------LHNER-TGSWKSFIAEC 693
           + S  EL+ A+ NFS++N++G G FG V               L  ER  G    F  E 
Sbjct: 27  RFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEV 86
Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLG-------------DWIHG 740
           E +    HRNL++L   C +   +      LVY +++NGS+              DW   
Sbjct: 87  EMISMAVHRNLLRLRGFCMTPTER-----LLVYPYMANGSVASCLRERPESQPPLDWPKR 141
Query: 741 ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
           +R   L     L YLH+ C+  ++H D+K  NILLDEE  A VGDFGLA+ +     +  
Sbjct: 142 QRIA-LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM-----DYK 195
Query: 801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTS-----ESFAGE--FNIVK-------- 845
                    G+IG++ PEY    + S   DV        E   G+  F++ +        
Sbjct: 196 DXHVXXAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM 255
Query: 846 ---WVESNLPENVLQVL-DPELRQLMTSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGR 900
              WV+  L E  L+ L D +L+      E  Q IQ           V L CT  SP  R
Sbjct: 256 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ-----------VALLCTQSSPMER 304
Query: 901 IGIREALRRLK 911
             + E +R L+
Sbjct: 305 PKMSEVVRMLE 315

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 132/311 (42%), Gaps = 71/311 (22%)
Query: 650 KISYDELRRATGNFSHENLIGSGSFGSV---------------LHNERT-GSWKSFIAEC 693
           + S  EL+ A+ NF ++N++G G FG V               L  ERT G    F  E 
Sbjct: 19  RFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEV 78
Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLG-------------DWIHG 740
           E +    HRNL++L   C +   +      LVY +++NGS+              DW   
Sbjct: 79  EMISMAVHRNLLRLRGFCMTPTER-----LLVYPYMANGSVASCLRERPESQPPLDWPKR 133
Query: 741 ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
           +R   L     L YLH+ C+  ++H D+K  NILLDEE  A VGDFGLA+ +     +  
Sbjct: 134 QRIA-LGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLM-----DYK 187
Query: 801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTS-----ESFAGE--FNIVK-------- 845
                    G IG++ PEY    + S   DV        E   G+  F++ +        
Sbjct: 188 DXHVXXAVRGXIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM 247
Query: 846 ---WVESNLPENVLQVL-DPELRQLMTSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGR 900
              WV+  L E  L+ L D +L+      E  Q IQ           V L CT  SP  R
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ-----------VALLCTQSSPMER 296
Query: 901 IGIREALRRLK 911
             + E +R L+
Sbjct: 297 PKMSEVVRMLE 307

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 122/265 (46%), Gaps = 45/265 (16%)
Query: 344 IPESIGNFSNELSKLYLGG-NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIXXXXX 402
           IP S+ N    L+ LY+GG N++ G IP +I +L  L  L +++ ++SG           
Sbjct: 68  IPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----------- 115
Query: 403 XXXXXXXXNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
                         IP+ L+ +K L  +D S N L+G +P S  +  +L+ I    NRI+
Sbjct: 116 -------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 463 GNIPKG-----------------ILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK 505
           G IP                   +   +P   + L N+  +DLS N L G+      + K
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221
Query: 506 SLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
           + +++ +A N  +  +   V   K L  LDL +N++ G++P  L  L+ L SLN++FNNL
Sbjct: 222 NTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 566 EGVVPSEGIFRNMSNVHLKGNPKLC 590
            G +P  G  +         N  LC
Sbjct: 281 CGEIPQGGNLQRFDVSAYANNKCLC 305

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 451 LLSIDLSNNRING------NIPKGILRPLPEEISRLENVVTIDLSD-NSLSGNLPNSLKN 503
           L   D    R+N       N+PK    P+P  ++ L  +  + +   N+L G +P ++  
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN 563
              L  L + +   SG IP+ ++++K L  LD S N LSG++P  + +L  L  +    N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 564 NLEGVVP-SEGIFRNM 578
            + G +P S G F  +
Sbjct: 160 RISGAIPDSYGSFSKL 175

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 118/256 (46%), Gaps = 62/256 (24%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHN---------------ERTGSWKSFIAECETLRNV 699
           +L  AT NF H+ LIG G FG V                  E +   + F  E ETL   
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG----------ERKNELDIT 749
           RH +LV LI  C   D +N   + L+Y+++ NG+L   ++G          E++ E+ I 
Sbjct: 93  RHPHLVSLIGFC---DERNE--MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 750 SA--LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH- 806
           +A  L YLH      ++H D+K  NILLDE    K+ DFG+++         + +  TH 
Sbjct: 148 AARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISK-------KGTELDQTHL 197
Query: 807 --VFMGSIGYVPPEYGLGERPSTAGDVPT---------------SESFAGEF-NIVKW-V 847
             V  G++GY+ PEY +  R +   DV +                +S   E  N+ +W V
Sbjct: 198 XXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAV 257
Query: 848 ESNLPENVLQVLDPEL 863
           ES+    + Q++DP L
Sbjct: 258 ESHNNGQLEQIVDPNL 273

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 118/256 (46%), Gaps = 62/256 (24%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHN---------------ERTGSWKSFIAECETLRNV 699
           +L  AT NF H+ LIG G FG V                  E +   + F  E ETL   
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG----------ERKNELDIT 749
           RH +LV LI  C   D +N   + L+Y+++ NG+L   ++G          E++ E+ I 
Sbjct: 93  RHPHLVSLIGFC---DERNE--MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIG 147
Query: 750 SA--LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH- 806
           +A  L YLH      ++H D+K  NILLDE    K+ DFG+++         + +  TH 
Sbjct: 148 AARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISK-------KGTELGQTHL 197
Query: 807 --VFMGSIGYVPPEYGLGERPSTAGDVPT---------------SESFAGEF-NIVKW-V 847
             V  G++GY+ PEY +  R +   DV +                +S   E  N+ +W V
Sbjct: 198 XXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAV 257
Query: 848 ESNLPENVLQVLDPEL 863
           ES+    + Q++DP L
Sbjct: 258 ESHNNGQLEQIVDPNL 273

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 70.1 bits (170), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 72/282 (25%), Positives = 121/282 (42%), Gaps = 51/282 (18%)
Query: 669 IGSGSFGSVLHNERTGS----------------WKSFIAECETLRNVRHRNLVKLITSCS 712
           IG+GSFG+V   E  GS                   F+ E   ++ +RH N+V  + + +
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT 104
Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIH--------GERKN---ELDITSALDYLHNDCEV 761
              +     L++V E+LS GSL   +H         ER+      D+   ++YLHN    
Sbjct: 105 QPPN-----LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NP 158
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
           P+VH +LK  N+L+D++ T KV DFGL+R         S+  S+    G+  ++ PE  L
Sbjct: 159 PIVHRNLKSPNLLVDKKYTVKVCDFGLSRL------KASTFLSSKSAAGTPEWMAPEV-L 211
Query: 822 GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL 881
            + PS        +S    F ++ W  + L +     L+P         + + +++   L
Sbjct: 212 RDEPS------NEKSDVYSFGVILWELATL-QQPWGNLNPAQVVAAVGFKCKRLEIPRNL 264
Query: 882 ITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVP 923
              + ++   C T  P  R      +  L+     L+K  VP
Sbjct: 265 NPQVAAIIEGCWTNEPWKRPSFATIMDLLRP----LIKSAVP 302

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 33/150 (22%)
Query: 669 IGSGSFGSVLHNERTGS----------------WKSFIAECETLRNVRHRNLVKLITSCS 712
           IG+GSFG+V   E  GS                   F+ E   ++ +RH N+V  + + +
Sbjct: 45  IGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVT 104
Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIH--GERKN---------ELDITSALDYLHNDCEV 761
              +     L++V E+LS GSL   +H  G R+            D+   ++YLHN    
Sbjct: 105 QPPN-----LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR-NP 158
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
           P+VH DLK  N+L+D++ T KV DFGL+R 
Sbjct: 159 PIVHRDLKSPNLLVDKKYTVKVCDFGLSRL 188

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 46/191 (24%)
Query: 669 IGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITS 710
           +G G FG V      G+W                  ++F+ E + ++ +RH  LV+L   
Sbjct: 192 LGQGCFGEVW----MGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCE 760
            S       E + +V E++S GSL D++ GE    L           I S + Y+     
Sbjct: 248 VSE------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER--- 298
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           +  VH DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  
Sbjct: 299 MNYVHRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAA 353
Query: 821 LGERPSTAGDV 831
           L  R +   DV
Sbjct: 354 LYGRFTIKSDV 364

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 46/191 (24%)
Query: 669 IGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITS 710
           +G G FG V      G+W                  ++F+ E + ++ +RH  LV+L   
Sbjct: 192 LGQGCFGEVW----MGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCE 760
            S       E + +V E++S GSL D++ GE    L           I S + Y+     
Sbjct: 248 VSE------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER--- 298
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           +  VH DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  
Sbjct: 299 MNYVHRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAA 353
Query: 821 LGERPSTAGDV 831
           L  R +   DV
Sbjct: 354 LYGRFTIKSDV 364

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 16  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 75  -----EPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 126
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 127 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEXTARQGAKF--PIKWTAPEAALYGR 181
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 182 FTIKSDV 188

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S + FI E E +  + H  LV+L   C   
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 72
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL   C   V+H
Sbjct: 73  AP-----ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIH 124
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 125 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 179
Query: 826 STAGDV 831
           S+  DV
Sbjct: 180 SSKSDV 185

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S + FI E E +  + H  LV+L   C   
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 77
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL   C   V+H
Sbjct: 78  AP-----ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIH 129
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 130 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 184
Query: 826 STAGDV 831
           S+  DV
Sbjct: 185 SSKSDV 190

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S + FI E E +  + H  LV+L   C   
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL   C   V+H
Sbjct: 75  AP-----ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIH 126
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 127 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 181
Query: 826 STAGDV 831
           S+  DV
Sbjct: 182 SSKSDV 187

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKIRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEXTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 46/191 (24%)
Query: 669 IGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITS 710
           +G G FG V      G+W                  ++F+ E + ++ +RH  LV+L   
Sbjct: 192 LGQGCFGEVW----MGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAV 247
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCE 760
            S       E + +V E++S GSL D++ GE    L           I S + Y+     
Sbjct: 248 VSE------EPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER--- 298
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           +  VH DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  
Sbjct: 299 MNYVHRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAA 353
Query: 821 LGERPSTAGDV 831
           L  R +   DV
Sbjct: 354 LYGRFTIKSDV 364

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S   FI E E +  + H  LV+L   C   
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMSEDDFIEEAEVMMKLSHPKLVQLYGVCLEQ 94
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL   C   V+H
Sbjct: 95  AP-----ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIH 146
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 147 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 201
Query: 826 STAGDV 831
           S+  DV
Sbjct: 202 SSKSDV 207

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 83/194 (42%), Gaps = 46/194 (23%)
Query: 666 ENLIGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKL 707
           E  +G G FG V      G+W                  ++F+ E + ++ +RH  LV+L
Sbjct: 272 EVKLGQGCFGEVW----MGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL 327
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
               S       E + +V E++S GSL D++ GE    L           I S + Y+  
Sbjct: 328 YAVVSE------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVER 381
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              +  VH DL+  NIL+ E +  KV DFGLAR +    DN+ +      F   I +  P
Sbjct: 382 ---MNYVHRDLRAANILVGENLVCKVADFGLARLI---EDNEYTARQGAKF--PIKWTAP 433
Query: 818 EYGLGERPSTAGDV 831
           E  L  R +   DV
Sbjct: 434 EAALYGRFTIKSDV 447

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 19  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 77
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 78  -----EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 129
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 130 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 184
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 185 FTIKSDV 191

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 15  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 73
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 74  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 125
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 126 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 180
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 181 FTIKSDV 187

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 17  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 75
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 76  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 127
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 128 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 182
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 183 FTIKSDV 189

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S + FI E E +  + H  LV+L   C   
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV+EF+ +G L D++  +R            LD+   + YL    E  V+H
Sbjct: 75  AP-----ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLE---EASVIH 126
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 127 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 181
Query: 826 STAGDV 831
           S+  DV
Sbjct: 182 SSKSDV 187

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 64/210 (30%), Positives = 87/210 (41%), Gaps = 53/210 (25%)
Query: 652 SYDELRRATGNFSHE------NLIGSGSFGSVLH---NERTGSWKSFIA----------- 691
           S+ EL+  T NF         N +G G FG V     N  T + K   A           
Sbjct: 10  SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQ 69
Query: 692 ----ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
               E + +   +H NLV+L+   S  D      L LVY ++ NGSL D     R + LD
Sbjct: 70  QFDQEIKVMAKCQHENLVELLGFSSDGDD-----LCLVYVYMPNGSLLD-----RLSCLD 119
Query: 748 ITSALDYLHNDCEVPV--------------VHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
            T  L + H  C++                +H D+K  NILLDE  TAK+ DFGLAR   
Sbjct: 120 GTPPLSW-HMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR--- 175
Query: 794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
              +  +        +G+  Y+ PE   GE
Sbjct: 176 -ASEKFAQXVMXXRIVGTTAYMAPEALRGE 204

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 65/209 (31%), Positives = 90/209 (43%), Gaps = 49/209 (23%)
Query: 651 ISYDELRRATGNFSHE------NLIGSGSFGSVLH---NERTGSWKSFIA---------- 691
            S+ EL+  T NF         N +G G FG V     N  T + K   A          
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 692 -----ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD---------- 736
                E + +   +H NLV+L+   S  D      L LVY ++ NGSL D          
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDD-----LCLVYVYMPNGSLLDRLSCLDGTPP 129
Query: 737 --WIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             W H   K      + +++LH +  +   H D+K  NILLDE  TAK+ DFGLAR   E
Sbjct: 130 LSW-HMRCKIAQGAANGINFLHENHHI---HRDIKSANILLDEAFTAKISDFGLAR-ASE 184
Query: 795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
           +   Q+ + S    +G+  Y+ PE   GE
Sbjct: 185 KF-AQTVMXSR--IVGTTAYMAPEALRGE 210

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 86/209 (41%), Gaps = 49/209 (23%)
Query: 651 ISYDELRRATGNFSHE------NLIGSGSFGSVLH---NERTGSWKSFIA---------- 691
            S+ EL+  T NF         N +G G FG V     N  T + K   A          
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 692 -----ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD---------- 736
                E + +   +H NLV+L+   S  D      L LVY ++ NGSL D          
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDD-----LCLVYVYMPNGSLLDRLSCLDGTPP 129
Query: 737 --WIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             W H   K      + +++LH +  +   H D+K  NILLDE  TAK+ DFGLAR    
Sbjct: 130 LSW-HMRCKIAQGAANGINFLHENHHI---HRDIKSANILLDEAFTAKISDFGLAR---- 181
Query: 795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
             +  +        +G+  Y+ PE   GE
Sbjct: 182 ASEKFAQTVMXXRIVGTTAYMAPEALRGE 210

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 46/191 (24%)
Query: 669 IGSGSFGSVLHNERTGSW------------------KSFIAECETLRNVRHRNLVKLITS 710
           +G G FG V      G+W                  ++F+ E + ++ +RH  LV+L   
Sbjct: 193 LGQGCFGEVW----MGTWNGTTRVAIKTLKPGNMSPEAFLQEAQVMKKLRHEKLVQLYAV 248
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCE 760
            S       E + +V E++S GSL D++ GE    L           I S + Y+     
Sbjct: 249 VSE------EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVER--- 299
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           +  VH DL+  NIL+ E +  KV DFGL R +    DN+ +      F   I +  PE  
Sbjct: 300 MNYVHRDLRAANILVGENLVCKVADFGLGRLI---EDNEYTARQGAKF--PIKWTAPEAA 354
Query: 821 LGERPSTAGDV 831
           L  R +   DV
Sbjct: 355 LYGRFTIKSDV 365

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 81/186 (43%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSV-----LHNERTG---------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           IGSG FG V     L+ ++           S + FI E E +  + H  LV+L   C   
Sbjct: 16  IGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQ 75
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK---------NELDITSALDYLHNDCEVPVVH 765
                  + LV EF+ +G L D++  +R            LD+   + YL   C   V+H
Sbjct: 76  AP-----ICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEAC---VIH 127
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L+ E    KV DFG+ RF+L   D+Q + S+   F   + +  PE     R 
Sbjct: 128 RDLAARNCLVGENQVIKVSDFGMTRFVL---DDQYTSSTGTKF--PVKWASPEVFSFSRY 182
Query: 826 STAGDV 831
           S+  DV
Sbjct: 183 SSKSDV 188

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S GSL D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL   NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLAAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 81
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E+++ GSL D++ GE    L           I S + Y+     +  V
Sbjct: 82  -----EPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE---RMNYV 133
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 134 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 188
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 189 FTIKSDV 195

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 23  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 81
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E+++ GSL D++ GE    L           I S + Y+     +  V
Sbjct: 82  -----EPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYVE---RMNYV 133
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 134 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEWTARQGAKF--PIKWTAPEAALYGR 188
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 189 FTIKSDV 195

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S G L D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G G FG V      G+ +              +F+ E + ++ +RH  LV+L    S  
Sbjct: 26  LGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVPVV 764
                E + +V E++S G L D++ GE    L           I S + Y+     +  V
Sbjct: 85  -----EPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVE---RMNYV 136
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+ E +  KV DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 137 HRDLRAANILVGENLVCKVADFGLAR-LIE--DNEYTARQGAKF--PIKWTAPEAALYGR 191
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 192 FTIKSDV 198

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 25/136 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-- 747
           E + L+  RH +++KL    S+      +F  +V E++S G L D+I  HG R  E++  
Sbjct: 61  EIQNLKLFRHPHIIKLYQVIST----PTDFF-MVMEYVSGGELFDYICKHG-RVEEMEAR 114
Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
                I SA+DY H      VVH DLKP N+LLD  M AK+ DFGL+  + +    ++S 
Sbjct: 115 RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSC 171
Query: 803 SSTHVFMGSIGYVPPE 818
                  GS  Y  PE
Sbjct: 172 -------GSPNYAAPE 180

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/110 (39%), Positives = 61/110 (55%), Gaps = 18/110 (16%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-- 747
           E + L+  RH +++KL    S+      +F  +V E++S G L D+I  HG R  E++  
Sbjct: 61  EIQNLKLFRHPHIIKLYQVIST----PTDFF-MVMEYVSGGELFDYICKHG-RVEEMEAR 114
Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                I SA+DY H      VVH DLKP N+LLD  M AK+ DFGL+  +
Sbjct: 115 RLFQQILSAVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM 161

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 81/158 (51%), Gaps = 19/158 (12%)
Query: 681 ERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
           E+  + K F  E      + H+N+V +I     +D ++ +   LV E++   +L ++I  
Sbjct: 50  EKEETLKRFEREVHNSSQLSHQNIVSMI----DVDEED-DCYYLVMEYIEGPTLSEYI-- 102
Query: 741 ERKNELDITSA-------LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
           E    L + +A       LD + +  ++ +VH D+KP NIL+D   T K+ DFG+A+ L 
Sbjct: 103 ESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKAL- 161
Query: 794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
               +++S++ T+  +G++ Y  PE   GE      D+
Sbjct: 162 ----SETSLTQTNHVLGTVQYFSPEQAKGEATDECTDI 195

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 15  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 74
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITS- 750
           R  RH N++  +   +         LA+V ++    SL   +H      E K  +DI   
Sbjct: 75  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQ 128
Query: 751 ---ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E+ T K+GDFGLA         +S  S +H 
Sbjct: 129 TARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA-------TEKSRWSGSHQ 178
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 179 FEQLSGSILWMAPE 192

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 82/192 (42%), Gaps = 43/192 (22%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRN 698
           D+     G  +    IGSGSFG+V   +  G                 ++F  E   LR 
Sbjct: 17  DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 76
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITS--- 750
            RH N++  +   ++        LA+V ++    SL   +H      E K  +DI     
Sbjct: 77  TRHVNILLFMGYSTAPQ------LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTA 130
Query: 751 -ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF- 808
             +DYLH      ++H DLK  NI L E+ T K+GDFGLA         +S  S +H F 
Sbjct: 131 RGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLA-------TEKSRWSGSHQFE 180
Query: 809 --MGSIGYVPPE 818
              GSI ++ PE
Sbjct: 181 QLSGSILWMAPE 192

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 3   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 62
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITS- 750
           R  RH N++  +   +         LA+V ++    SL   +H      E K  +DI   
Sbjct: 63  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHASETKFEMKKLIDIARQ 116
Query: 751 ---ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E+ T K+GDFGLA         +S  S +H 
Sbjct: 117 TARGMDYLHAKS---IIHRDLKSNNIFLHEDNTVKIGDFGLATV-------KSRWSGSHQ 166
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 167 FEQLSGSILWMAPE 180

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 84/192 (43%), Gaps = 43/192 (22%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRN 698
           D+     G  +    IGSGSFG+V   +  G                 ++F  E   LR 
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 60
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT---- 749
            RH N++  +   ++        LA+V ++    SL   +H  E K E+    DI     
Sbjct: 61  TRHVNILLFMGYSTAPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTA 114
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF- 808
             +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H F 
Sbjct: 115 QGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQFE 164
Query: 809 --MGSIGYVPPE 818
              GSI ++ PE
Sbjct: 165 QLSGSILWMAPE 176

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 19  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 78
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 79  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 132
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 133 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA-------TEKSRWSGSHQ 182
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 183 FEQLSGSILWMAPE 196

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 43/192 (22%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRN 698
           D+     G  +    IGSGSFG+V   +  G                 ++F  E   LR 
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 60
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT---- 749
            RH N++  +   +         LA+V ++    SL   +H  E K E+    DI     
Sbjct: 61  TRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTA 114
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF- 808
             +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H F 
Sbjct: 115 QGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA-------TEKSRWSGSHQFE 164
Query: 809 --MGSIGYVPPE 818
              GSI ++ PE
Sbjct: 165 QLSGSILWMAPE 176

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 27  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 86
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 87  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 140
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 141 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLA-------TEKSRWSGSHQ 190
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 191 FEQLSGSILWMAPE 204

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 43/169 (25%)
Query: 658 RATGNFSHENLIGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVR 700
           R   +F    ++G G+FG V+                 H E   S  + ++E   L ++ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLS--TILSEVMLLASLN 60
Query: 701 HRNLVK----------LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----- 745
           H+ +V+           +   +++  K+  F+ +  E+  NG+L D IH E  N+     
Sbjct: 61  HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQM--EYCENGTLYDLIHSENLNQQRDEY 118
Query: 746 ----LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 I  AL Y+H+     ++H DLKP NI +DE    K+GDFGLA+
Sbjct: 119 WRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAK 164

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 150
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 151 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANAFVGTAQYVSPE 202

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 64  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 117
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 118 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQ 167
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 168 FEQLSGSILWMAPE 181

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 1   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 60
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 61  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 114
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 115 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQ 164
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 165 FEQLSGSILWMAPE 178

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 4   SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 64  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 117
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 118 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQ 167
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 168 FEQLSGSILWMAPE 181

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 204

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 204

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 27  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 86
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 87  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 140
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 141 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQ 190
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 191 FEQLSGSILWMAPE 204

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 34  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 93
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 153
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 154 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 205

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 204

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 84/194 (43%), Gaps = 43/194 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETL 696
           S D+     G  +    IGSGSFG+V   +  G                 ++F  E   L
Sbjct: 26  SSDDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVL 85
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT-- 749
           R  RH N++  +   +         LA+V ++    SL   +H  E K E+    DI   
Sbjct: 86  RKTRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQ 139
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
               +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H 
Sbjct: 140 TAQGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQ 189
Query: 808 F---MGSIGYVPPE 818
           F    GSI ++ PE
Sbjct: 190 FEQLSGSILWMAPE 203

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 669 IGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS 716
           IG G FG V+  +  G            + ++F+AE   +  +RH NLV+L+     +  
Sbjct: 14  IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL----GVIV 69
Query: 717 KNMEFLALVYEFLSNGSLGDWIHGERKN----------ELDITSALDYLHNDCEVPVVHS 766
           +    L +V E+++ GSL D++    ++           LD+  A++YL  +     VH 
Sbjct: 70  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR 126
Query: 767 DLKPGNILLDEEMTAKVGDFGLAR 790
           DL   N+L+ E+  AKV DFGL +
Sbjct: 127 DLAARNVLVSEDNVAKVSDFGLTK 150

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 669 IGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS 716
           IG G FG V+  +  G            + ++F+AE   +  +RH NLV+L+     +  
Sbjct: 20  IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL----GVIV 75
Query: 717 KNMEFLALVYEFLSNGSLGDWIHGERKN----------ELDITSALDYLHNDCEVPVVHS 766
           +    L +V E+++ GSL D++    ++           LD+  A++YL  +     VH 
Sbjct: 76  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR 132
Query: 767 DLKPGNILLDEEMTAKVGDFGLAR 790
           DL   N+L+ E+  AKV DFGL +
Sbjct: 133 DLAARNVLVSEDNVAKVSDFGLTK 156

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 29/144 (20%)
Query: 669 IGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS 716
           IG G FG V+  +  G            + ++F+AE   +  +RH NLV+L+     +  
Sbjct: 29  IGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLL----GVIV 84
Query: 717 KNMEFLALVYEFLSNGSLGDWIHGERKN----------ELDITSALDYLHNDCEVPVVHS 766
           +    L +V E+++ GSL D++    ++           LD+  A++YL  +     VH 
Sbjct: 85  EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR 141
Query: 767 DLKPGNILLDEEMTAKVGDFGLAR 790
           DL   N+L+ E+  AKV DFGL +
Sbjct: 142 DLAARNVLVSEDNVAKVSDFGLTK 165

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 43/192 (22%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRN 698
           D+     G  +    IGSGSFG+V   +  G                 ++F  E   LR 
Sbjct: 1   DDWEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRK 60
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL----DIT---- 749
            RH N++  +   +         LA+V ++    SL   +H  E K E+    DI     
Sbjct: 61  TRHVNILLFMGYSTKPQ------LAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTA 114
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF- 808
             +DYLH      ++H DLK  NI L E++T K+GDFGLA         +S  S +H F 
Sbjct: 115 QGMDYLHAKS---IIHRDLKSNNIFLHEDLTVKIGDFGLATV-------KSRWSGSHQFE 164
Query: 809 --MGSIGYVPPE 818
              GSI ++ PE
Sbjct: 165 QLSGSILWMAPE 176

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 36  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 95
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 96  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 155
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 156 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 207

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 204

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 150
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 151 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 202

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 83/209 (39%), Gaps = 49/209 (23%)
Query: 651 ISYDELRRATGNFSHE------NLIGSGSFGSVLH---NERTGSWKSFIA---------- 691
            S+ EL+  T NF         N  G G FG V     N  T + K   A          
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 65
Query: 692 -----ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGD---------- 736
                E +     +H NLV+L+   S  D      L LVY +  NGSL D          
Sbjct: 66  QQFDQEIKVXAKCQHENLVELLGFSSDGDD-----LCLVYVYXPNGSLLDRLSCLDGTPP 120
Query: 737 --WIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             W H   K      + +++LH +  +   H D+K  NILLDE  TAK+ DFGLAR   E
Sbjct: 121 LSW-HXRCKIAQGAANGINFLHENHHI---HRDIKSANILLDEAFTAKISDFGLAR-ASE 175
Query: 795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
           +       S     +G+  Y  PE   GE
Sbjct: 176 KFAQXVXXSR---IVGTTAYXAPEALRGE 201

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 204

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDSK 717
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 30  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 89
Query: 718 NMEFLALVYE----------FLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
               L   ++          +  NG L  +I           R    +I SAL+YLH   
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 149
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 150 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 201

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 38  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 97
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 98  FFVKLYFCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 157
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 158 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 209

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 34  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 93
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 94  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 153
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 154 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANSFVGTAQYVSPE 205

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 57/208 (27%), Positives = 85/208 (40%), Gaps = 56/208 (26%)
Query: 657 RRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA------------ECETLRNVRHRNL 704
           +R   +F    LIGSG FG V   +     K+++             E + L  + H N+
Sbjct: 8   KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAEREVKALAKLDHVNI 67
Query: 705 VKLI-----------TSCSSLDSKNME-------------FLALVYEFLSNGSLGDWIHG 740
           V              TS  SL+S + +              L +  EF   G+L  WI  
Sbjct: 68  VHYNGCWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEK 127
Query: 741 ERKNELD----------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            R  +LD          IT  +DY+H+     ++H DLKP NI L +    K+GDFGL  
Sbjct: 128 RRGEKLDKVLALELFEQITKGVDYIHSK---KLIHRDLKPSNIFLVDTKQVKIGDFGLVT 184
Query: 791 FLLERVDNQSSISSTHVFMGSIGYVPPE 818
            L  + D + + S      G++ Y+ PE
Sbjct: 185 SL--KNDGKRTRSK-----GTLRYMSPE 205

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME 720
           +F    ++G GSF +V+      + + +  +    R++   N V  +T    + S+ +  
Sbjct: 33  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 92
Query: 721 FLALVY-------------EFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
           F   +Y              +  NG L  +I           R    +I SAL+YLH   
Sbjct: 93  FFVKLYFTFQDDEKLYFGLSYAKNGCLLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 152
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 153 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANSFVGTAQYVSPE 204

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 15  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 74
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 75  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 133
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 134 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 186

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 8   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 67
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 68  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 126
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 127 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 179

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 10  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 69
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 70  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 128
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 129 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 181

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 11  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 70
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 71  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 129
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 130 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 182

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 9   DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 68
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 69  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 127
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 128 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 180

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 149
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 150 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 202

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDSK 717
           +F    ++G GSF +V+      + + +  +    R++   N V  +T      S LD  
Sbjct: 30  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 89
Query: 718 NMEFLALVYE----------FLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
               L   ++          +  NG L  +I           R    +I SAL+YLH   
Sbjct: 90  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKG 149
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 150 ---IIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANSFVGTAQYVSPE 201

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 43/195 (22%)
Query: 657 RRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA------------ECETLRNVRHRNL 704
           +R   +F    LIGSG FG V   +     K+++             E + L  + H N+
Sbjct: 7   KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNI 66
Query: 705 VKLITSCSSLD------SKN-----MEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
           V         D      SKN      + L +  EF   G+L  WI   R  +LD      
Sbjct: 67  VHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALE 126
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
               IT  +DY+H+     +++ DLKP NI L +    K+GDFGL   L  + D +   S
Sbjct: 127 LFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDFGLVTSL--KNDGKRXRS 181
Query: 804 STHVFMGSIGYVPPE 818
                 G++ Y+ PE
Sbjct: 182 K-----GTLRYMSPE 191

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 96  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 49  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 108
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 109 GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 164
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 165 RYIHRDLATRNILVENENRVKIGDFGLTKVL 195

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 17  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 76
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 77  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 132
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 133 RYIHRDLATRNILVENENRVKIGDFGLTKVL 163

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 36  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 95
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 96  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 151
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 152 RYIHRDLATRNILVENENRVKIGDFGLTKVL 182

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 78  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 78  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 18  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 77
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 78  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 133
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 134 RYIHRDLATRNILVENENRVKIGDFGLTKVL 164

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 25  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 84
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 85  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 140
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 141 RYIHRDLATRNILVENENRVKIGDFGLTKVL 171

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 24  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 83
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 84  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 139
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 140 RYIHRDLATRNILVENENRVKIGDFGLTKVL 170

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 16  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 75
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 76  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 131
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 132 RYIHRDLATRNILVENENRVKIGDFGLTKVL 162

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 23  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 82
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 83  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 138
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 139 RYIHRDLATRNILVENENRVKIGDFGLTKVL 169

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 22  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 81
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 82  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 137
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 138 RYIHRDLATRNILVENENRVKIGDFGLTKVL 168

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 81  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 136
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 137 RYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 35/153 (22%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDITSALDYLHNDCE------ 760
             C S   +N   L L+ E+L  GSL D++  H ER   +D    L Y    C+      
Sbjct: 81  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQAHAER---IDHIKLLQYTSQICKGMEYLG 134
Query: 761 -VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               +H DL   NIL++ E   K+GDFGL + L
Sbjct: 135 TKRYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 29/179 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITS----CSSLDS- 716
           +F    ++G GSF + +      + + +  +    R++   N V  +T      S LD  
Sbjct: 31  DFKFGKILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90
Query: 717 ---------KNMEFLALVYEFLSNGSLGDWIHG--------ERKNELDITSALDYLHNDC 759
                    ++ E L     +  NG L  +I           R    +I SAL+YLH   
Sbjct: 91  FFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK- 149
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              ++H DLKP NILL+E+M  ++ DFG A+ L      +S  +  + F+G+  YV PE
Sbjct: 150 --GIIHRDLKPENILLNEDMHIQITDFGTAKVL----SPESKQARANXFVGTAQYVSPE 202

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 34/164 (20%)
Query: 654 DELRRATGNFSHENL-----IGSGSFGSVLHNERTG------------SWKSFIAECETL 696
           DE  R+    + + L     IG G FG V+  +  G            + ++F+AE   +
Sbjct: 181 DEFYRSGWALNMKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVM 240
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----------EL 746
             +RH NLV+L+     +  +    L +V E+++ GSL D++    ++           L
Sbjct: 241 TQLRHSNLVQLL----GVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSL 296
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           D+  A++YL  +     VH DL   N+L+ E+  AKV DFGL +
Sbjct: 297 DVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTK 337

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 89
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 90  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 143
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 144 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EETSSVGSKF----PVRWSPPEVLMYSKF 198
Query: 826 STAGDV 831
           S+  D+
Sbjct: 199 SSKSDI 204

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 21  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ EFL  GSL +++  + K  +D    L Y    C+        
Sbjct: 81  GVCYSAGRRN---LKLIMEFLPYGSLREYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 136
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H DL   NIL++ E   K+GDFGL + L
Sbjct: 137 RYIHRDLATRNILVENENRVKIGDFGLTKVL 167

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 43/169 (25%)
Query: 658 RATGNFSHENLIGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVR 700
           R   +F    ++G G+FG V+                 H E   S  + ++E   L ++ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLS--TILSEVMLLASLN 60
Query: 701 HRNLVK----------LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----- 745
           H+ +V+           +   +++  K+  F+ +  E+  N +L D IH E  N+     
Sbjct: 61  HQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQM--EYCENRTLYDLIHSENLNQQRDEY 118
Query: 746 ----LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 I  AL Y+H+     ++H DLKP NI +DE    K+GDFGLA+
Sbjct: 119 WRLFRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAK 164

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 33/169 (19%)
Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAEC 693
           P  +YD+      + + ++ +G G +G V                  E T   + F+ E 
Sbjct: 2   PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 61
Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
             ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++      
Sbjct: 62  AVMKEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVLLY 116
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 117 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 162

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 33/169 (19%)
Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAEC 693
           P  +YD+      + + ++ +G G +G V                  E T   + F+ E 
Sbjct: 5   PSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 64
Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
             ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++      
Sbjct: 65  AVMKEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLY 119
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 120 MATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 165

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 23  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 80
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 81  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 134
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 135 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVGSKF----PVRWSPPEVLMYSKF 189
Query: 826 STAGDV 831
           S+  D+
Sbjct: 190 SSKSDI 195

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 16  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 73
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 74  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 127
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 128 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVGSKF----PVRWSPPEVLMYSKF 182
Query: 826 STAGDV 831
           S+  D+
Sbjct: 183 SSKSDI 188

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 75  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 128
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 129 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVGSKF----PVRWSPPEVLMYSKF 183
Query: 826 STAGDV 831
           S+  D+
Sbjct: 184 SSKSDI 189

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 32  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 89
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 90  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 143
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 144 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVGSKF----PVRWSPPEVLMYSKF 198
Query: 826 STAGDV 831
           S+  D+
Sbjct: 199 SSKSDI 204

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 69
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 70  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 123
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L+  +  SS+ S       + + PPE  +  + 
Sbjct: 124 RDLAARNCLVNDQGVVKVSDFGLSRYVLDD-EYTSSVGSKF----PVRWSPPEVLMYSKF 178
Query: 826 STAGDV 831
           S+  D+
Sbjct: 179 SSKSDI 184

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/186 (24%), Positives = 88/186 (47%), Gaps = 36/186 (19%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V + +  G +                FI E + + N+ H  LV+L   C+  
Sbjct: 17  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCT-- 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWI----HGERKNEL-----DITSALDYLHNDCEVPVVH 765
                  + ++ E+++NG L +++    H  +  +L     D+  A++YL +      +H
Sbjct: 75  ---KQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLH 128
Query: 766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP 825
            DL   N L++++   KV DFGL+R++L   D++ + S    F   + + PPE  +  + 
Sbjct: 129 RDLAARNCLVNDQGVVKVSDFGLSRYVL---DDEYTSSRGSKF--PVRWSPPEVLMYSKF 183
Query: 826 STAGDV 831
           S+  D+
Sbjct: 184 SSKSDI 189

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 67/267 (25%), Positives = 105/267 (39%), Gaps = 47/267 (17%)
Query: 666 ENLIGSGSFGSVLHN------------ERTGSWKSFIAECETLRNVRHRNLVKLITSCSS 713
           E ++G G+FG V               E     K+FI E   L  V H N+VKL  +C  
Sbjct: 13  EEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGAC-- 70
Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHNDCEVP 762
                +  + LV E+   GSL + +HG                L  +  + YLH+     
Sbjct: 71  -----LNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA 125
Query: 763 VVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
           ++H DLKP N+LL    T  K+ DFG A       D Q+ +++     GS  ++ PE   
Sbjct: 126 LIHRDLKPPNLLLVAGGTVLKICDFGTA------CDIQTHMTNNK---GSAAWMAPEVFE 176
Query: 822 GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL 881
           G   S   DV +       + I+ W      +   ++  P  R +   +      L   L
Sbjct: 177 GSNYSEKCDVFS-------WGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNL 229
Query: 882 ITIIGSVGLSCTTESPGGRIGIREALR 908
              I S+   C ++ P  R  + E ++
Sbjct: 230 PKPIESLMTRCWSKDPSQRPSMEEIVK 256

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 39/166 (23%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWK------------------SFIAECETL 696
           EL+R       E  +GSG FG V    + G WK                   F  E +T+
Sbjct: 4   ELKREEITLLKE--LGSGQFGVV----KLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTM 57
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEF-LALVYEFLSNGSLGDWIHGERKNELDITSALDYL 755
             + H  LVK    CS       E+ + +V E++SNG L +++    K  L+ +  L+  
Sbjct: 58  MKLSHPKLVKFYGVCSK------EYPIYIVTEYISNGCLLNYLRSHGKG-LEPSQLLEMC 110
Query: 756 HNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           ++ CE          +H DL   N L+D ++  KV DFG+ R++L+
Sbjct: 111 YDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD 156

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 43/191 (22%)
Query: 661 GNFSHENLIGSGSFGSV--LHNERTG----------------SWKSFIAECETLRNVRHR 702
           GN+  +  IG G+F  V    +  TG                S +    E   ++ + H 
Sbjct: 15  GNYRLQKTIGKGNFAKVKLARHVLTGREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHP 74
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNE------LDITSALDY 754
           N+VKL     +  +     L LV E+ S G + D++  HG  K +        I SA+ Y
Sbjct: 75  NIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSAVQY 129
Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST-HVFMGSIG 813
            H      +VH DLK  N+LLD +M  K+ DFG +        N+ ++ +    F GS  
Sbjct: 130 CHQKY---IVHRDLKAENLLLDGDMNIKIADFGFS--------NEFTVGNKLDTFCGSPP 178
Query: 814 YVPPEYGLGER 824
           Y  PE   G++
Sbjct: 179 YAAPELFQGKK 189

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 669 IGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
           +G G+FGSV                    L +      + F  E E L++++H N+VK  
Sbjct: 19  LGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYK 78
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------V 761
             C S   +N   L L+ E+L  GSL D++  + K  +D    L Y    C+        
Sbjct: 79  GVCYSAGRRN---LKLIMEYLPYGSLRDYLQ-KHKERIDHIKLLQYTSQICKGMEYLGTK 134
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H +L   NIL++ E   K+GDFGL + L
Sbjct: 135 RYIHRNLATRNILVENENRVKIGDFGLTKVL 165

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 106/267 (39%), Gaps = 47/267 (17%)
Query: 666 ENLIGSGSFGSVLHN------------ERTGSWKSFIAECETLRNVRHRNLVKLITSCSS 713
           E ++G G+FG V               E     K+FI E   L  V H N+VKL  +C  
Sbjct: 14  EEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGAC-- 71
Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHNDCEVP 762
                +  + LV E+   GSL + +HG                L  +  + YLH+     
Sbjct: 72  -----LNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKA 126
Query: 763 VVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
           ++H DLKP N+LL    T  K+ DFG A       D Q+ +++     GS  ++ PE   
Sbjct: 127 LIHRDLKPPNLLLVAGGTVLKICDFGTA------CDIQTHMTNNK---GSAAWMAPEVFE 177
Query: 822 GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL 881
           G   S   DV     F+  + I+ W      +   ++  P  R +   +      L   L
Sbjct: 178 GSNYSEKCDV-----FS--WGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLIKNL 230
Query: 882 ITIIGSVGLSCTTESPGGRIGIREALR 908
              I S+   C ++ P  R  + E ++
Sbjct: 231 PKPIESLMTRCWSKDPSQRPSMEEIVK 257

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 41/182 (22%)
Query: 669 IGSGSFGSVLHNERTGS-----WKSF-------------IAECETLRNVRHRNLVKLITS 710
           IG+GS+G      R        WK               ++E   LR ++H N+V+    
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-LD----------ITSALDYLH-- 756
              +D  N   L +V E+   G L   I  G ++ + LD          +T AL   H  
Sbjct: 74  I--IDRTNTT-LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR 130
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +D    V+H DLKP N+ LD +   K+GDFGLAR L    ++ +S + T  F+G+  Y+ 
Sbjct: 131 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL----NHDTSFAKT--FVGTPYYMS 184
Query: 817 PE 818
           PE
Sbjct: 185 PE 186

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 29  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 87
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 88  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 142
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 143 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 188

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 80  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 135 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 180

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 80  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 135 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 180

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 85
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 86  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 140
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 141 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 186

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 22  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 80
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 81  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 135
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 136 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 181

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 23  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 81
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 82  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 136
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 137 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 182

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 30  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 88
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 89  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 143
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 144 LRAANILVSDTLSCKIADFGLAR-LIE--DNEXTAREGAKF--PIKWTAPE 189

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 33/170 (19%)
Query: 648 HPKISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAE 692
           H   +YD+      + + ++ +G G +G V                  E T   + F+ E
Sbjct: 2   HMSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKE 61
Query: 693 CETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----- 747
              ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++     
Sbjct: 62  AAVMKEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 117 YMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 163

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 33/170 (19%)
Query: 648 HPKISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAE 692
           H   +YD+      + + ++ +G G +G V                  E T   + F+ E
Sbjct: 2   HMSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKE 61
Query: 693 CETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----- 747
              ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++     
Sbjct: 62  AAVMKEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLL 116
Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 117 YMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 163

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 16/109 (14%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--------HGERK 743
           E + L+  RH +++KL    S+        + +V E++S G L D+I           R+
Sbjct: 66  EIQNLKLFRHPHIIKLYQVISTPSD-----IFMVMEYVSGGELFDYICKNGRLDEKESRR 120
Query: 744 NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               I S +DY H      VVH DLKP N+LLD  M AK+ DFGL+  +
Sbjct: 121 LFQQILSGVDYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMM 166

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 661 GNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA----------ECETLRNVRH 701
           GN+     +G GSFG V   ++  TG         K  +A          E   LR +RH
Sbjct: 4   GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 63
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--------HGERKNELDITSALD 753
            +++KL     S D      + +V E+  N  L D+I           R+    I SA++
Sbjct: 64  PHIIKLYDVIKSKDE-----IIMVIEYAGN-ELFDYIVQRDKMSEQEARRFFQQIISAVE 117
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           Y H      +VH DLKP N+LLDE +  K+ DFGL+  + +
Sbjct: 118 YCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 155

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 38/192 (19%)
Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAEC-----------------ETLRNVRHRNLV 705
           F  +  +G+G+F  V+  E   + K F  +C                   LR ++H N+V
Sbjct: 24  FEFKETLGTGAFSEVVLAEEKATGKLFAVKCIPKKALKGKESSIENEIAVLRKIKHENIV 83
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNELDITSALDYLHNDCE 760
            L     S +      L LV + +S G L D I     + E+     I   LD ++    
Sbjct: 84  ALEDIYESPNH-----LYLVMQLVSGGELFDRIVEKGFYTEKDASTLIRQVLDAVYYLHR 138
Query: 761 VPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
           + +VH DLKP N+L    DEE    + DFGL+     +++ +  + ST    G+ GYV P
Sbjct: 139 MGIVHRDLKPENLLYYSQDEESKIMISDFGLS-----KMEGKGDVMSTAC--GTPGYVAP 191
Query: 818 EYGLGERPSTAG 829
           E  L ++P +  
Sbjct: 192 EV-LAQKPYSKA 202

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 27  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 85
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 86  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 140
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 141 LRAANILVSDTLSCKIADFGLAR-LIE--DNEYTAREGAKF--PIKWTAPE 186

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 31  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 89
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 90  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 144
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 145 LRAANILVSDTLSCKIADFGLAR-LIE--DNEYTAREGAKF--PIKWTAPE 190

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 21  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 79
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 80  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 134
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 135 LRAANILVSDTLSCKIADFGLAR-LIE--DNEYTAREGAKF--PIKWTAPE 180

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 16  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 74
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 75  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 129
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 130 LRAANILVSDTLSCKIADFGLAR-LIE--DNEYTAREGAKF--PIKWTAPE 175

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 77/171 (45%), Gaps = 32/171 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 26  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 84
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H D
Sbjct: 85  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRD 139
Query: 768 LKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L+  NIL+ + ++ K+ DFGLAR L+E  DN+ +      F   I +  PE
Sbjct: 140 LRAANILVSDTLSCKIADFGLAR-LIE--DNEYTAREGAKF--PIKWTAPE 185

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 661 GNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA----------ECETLRNVRH 701
           GN+     +G GSFG V   ++  TG         K  +A          E   LR +RH
Sbjct: 13  GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 72
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--------HGERKNELDITSALD 753
            +++KL     S D      + +V E+  N  L D+I           R+    I SA++
Sbjct: 73  PHIIKLYDVIKSKDE-----IIMVIEYAGN-ELFDYIVQRDKMSEQEARRFFQQIISAVE 126
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           Y H      +VH DLKP N+LLDE +  K+ DFGL+  + +
Sbjct: 127 YCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 661 GNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA----------ECETLRNVRH 701
           GN+     +G GSFG V   ++  TG         K  +A          E   LR +RH
Sbjct: 14  GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 73
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--------HGERKNELDITSALD 753
            +++KL     S D      + +V E+  N  L D+I           R+    I SA++
Sbjct: 74  PHIIKLYDVIKSKDE-----IIMVIEYAGN-ELFDYIVQRDKMSEQEARRFFQQIISAVE 127
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           Y H      +VH DLKP N+LLDE +  K+ DFGL+  + +
Sbjct: 128 YCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 165

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 36/161 (22%)
Query: 661 GNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA----------ECETLRNVRH 701
           GN+     +G GSFG V   ++  TG         K  +A          E   LR +RH
Sbjct: 8   GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRH 67
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--------HGERKNELDITSALD 753
            +++KL     S D      + +V E+  N  L D+I           R+    I SA++
Sbjct: 68  PHIIKLYDVIKSKDE-----IIMVIEYAGN-ELFDYIVQRDKMSEQEARRFFQQIISAVE 121
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           Y H      +VH DLKP N+LLDE +  K+ DFGL+  + +
Sbjct: 122 YCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 159

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 68
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 124 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 166

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 78/174 (44%), Gaps = 37/174 (21%)
Query: 669 IGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSS 713
           IGSGSFG+V   +  G                +++F  E   LR  RH N++ L     +
Sbjct: 44  IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNIL-LFMGYMT 102
Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIH-GERKNEL----DIT----SALDYLHNDCEVPVV 764
            D+     LA+V ++    SL   +H  E K ++    DI       +DYLH      ++
Sbjct: 103 KDN-----LAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKN---II 154
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           H D+K  NI L E +T K+GDFGLA        +Q     T    GS+ ++ PE
Sbjct: 155 HRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPT----GSVLWMAPE 204

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 5   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 64
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 65  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 119
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 120 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 162

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 68
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 124 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 166

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 17  NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 76
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 77  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 131
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 132 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 174

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 68
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 124 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 166

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 68
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 123
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 124 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 166

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 6   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 65
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E++         
Sbjct: 66  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVNAVVLLYMAT 120
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 121 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 163

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 41/182 (22%)
Query: 669 IGSGSFGSVLHNERTGS-----WKSF-------------IAECETLRNVRHRNLVKLITS 710
           IG+GS+G      R        WK               ++E   LR ++H N+V+    
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-LD----------ITSALDYLH-- 756
              +D  N   L +V E+   G L   I  G ++ + LD          +T AL   H  
Sbjct: 74  I--IDRTNTT-LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR 130
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +D    V+H DLKP N+ LD +   K+GDFGLAR L          S    F+G+  Y+ 
Sbjct: 131 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL------NHDTSFAKAFVGTPYYMS 184
Query: 817 PE 818
           PE
Sbjct: 185 PE 186

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F GS  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDTFCGSPPYAAPELFQGKK 188

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+          
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+          
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F GS  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDTFCGSPPYAAPELFQGKK 188

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F GS  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDTFCGSPPYAAPELFQGKK 188

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 32/174 (18%)
Query: 666 ENLIGSGSFGSVL---HNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSC 711
           E  +G+G FG V    +N+ T            S ++F+AE   ++ ++H  LVKL    
Sbjct: 193 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV 252
Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVV 764
           +       E + ++ EF++ GSL D++  +  ++  +   +D+     E          +
Sbjct: 253 TK------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI 306
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           H DL+  NIL+   +  K+ DFGLAR +    DN+ +      F   I +  PE
Sbjct: 307 HRDLRAANILVSASLVCKIADFGLARVI---EDNEYTAREGAKF--PIKWTAPE 355

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+          
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|3OCB|A Chain A, Akt1 Kinase Domain With Pyrrolopyrimidine Inhibitor Length = 341

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 41/191 (21%)
Query: 656 LRRATGN-FSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECET 695
           + R T N F +  L+G G+FG V+    + TG + +                  + E   
Sbjct: 3   MARVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRV 62
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           L+N RH  L  L  S  + D      L  V E+ + G L   +  ER    D        
Sbjct: 63  LQNSRHPFLTALKYSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAE 117
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I SALDYLH+  E  VV+ DLK  N++LD++   K+ DFGL +   E + + +++     
Sbjct: 118 IVSALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKX--- 169
Query: 808 FMGSIGYVPPE 818
           F G+  Y+ PE
Sbjct: 170 FCGTPEYLAPE 180

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 4   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 63
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+          
Sbjct: 64  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 118
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 119 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 161

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETL 696
           +YD+      + + ++ +G G +G V                  E T   + F+ E   +
Sbjct: 9   NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVM 68
Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------- 747
           + ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+          
Sbjct: 69  KEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVSAVVLLYMAT 123
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 124 QISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 166

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/167 (25%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECET 695
           +S D+      + + ++ +G G FG V                  E T   + F+ E   
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV 60
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+         
Sbjct: 61  MKEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 115
Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 116 TQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 159

>pdb|4EJN|A Chain A, Crystal Structure Of Autoinhibited Form Of Akt1 In Complex With N-(4- (5-(3-Acetamidophenyl)-2-(2-Aminopyridin-3-Yl)-3h- Imidazo[4,5- B]pyridin-3-Yl)benzyl)-3-Fluorobenzamide Length = 446

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 41/189 (21%)
Query: 658 RATGN-FSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLR 697
           R T N F +  L+G G+FG V+    + TG + +                  + E   L+
Sbjct: 144 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 203
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------IT 749
           N RH  L  L  S  + D      L  V E+ + G L   +  ER    D        I 
Sbjct: 204 NSRHPFLTALKYSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV 258
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           SALDYLH+  E  VV+ DLK  N++LD++   K+ DFGL +   E + + +++ +   F 
Sbjct: 259 SALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKT---FC 310
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 311 GTPEYLAPE 319

>pdb|3O96|A Chain A, Crystal Structure Of Human Akt1 With An Allosteric Inhibitor Length = 446

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 86/189 (45%), Gaps = 41/189 (21%)
Query: 658 RATGN-FSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLR 697
           R T N F +  L+G G+FG V+    + TG + +                  + E   L+
Sbjct: 147 RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 206
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------IT 749
           N RH  L  L  S  + D      L  V E+ + G L   +  ER    D        I 
Sbjct: 207 NSRHPFLTALKYSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV 261
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           SALDYLH+  E  VV+ DLK  N++LD++   K+ DFGL +   E + + +++ +   F 
Sbjct: 262 SALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKT---FC 313
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 314 GTPEYLAPE 322

>pdb|3CQU|A Chain A, Crystal Structure Of Akt-1 Complexed With Substrate Peptide And Inhibitor Length = 342

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 41/189 (21%)
Query: 658 RATGN-FSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLR 697
           R T N F +  L+G G+FG V+    + TG + +                  + E   L+
Sbjct: 6   RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 65
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------IT 749
           N RH  L  L  S  + D      L  V E+ + G L   +  ER    D        I 
Sbjct: 66  NSRHPFLTALKYSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV 120
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           SALDYLH+  E  VV+ DLK  N++LD++   K+ DFGL +   E + + +++     F 
Sbjct: 121 SALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKX---FC 172
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 173 GTPEYLAPE 181

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGER 742
           S +    E   ++ + H N+VKL     +  +     L L+ E+ S G + D++  HG  
Sbjct: 54  SLQKLFREVRIMKILNHPNIVKLFEVIETEKT-----LYLIMEYASGGEVFDYLVAHGRM 108
Query: 743 KNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +       
Sbjct: 109 KEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFS------- 158
Query: 797 DNQSSISST-HVFMGSIGYVPPEYGLGER 824
            N+ ++      F GS  Y  PE   G++
Sbjct: 159 -NEFTVGGKLDTFCGSPPYAAPELFQGKK 186

>pdb|4GV1|A Chain A, Pkb Alpha In Complex With Azd5363 Length = 340

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 41/189 (21%)
Query: 658 RATGN-FSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLR 697
           R T N F +  L+G G+FG V+    + TG + +                  + E   L+
Sbjct: 4   RVTMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQ 63
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------IT 749
           N RH  L  L  S  + D      L  V E+ + G L   +  ER    D        I 
Sbjct: 64  NSRHPFLTALKYSFQTHDR-----LCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIV 118
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           SALDYLH+  E  VV+ DLK  N++LD++   K+ DFGL +   E + + +++     F 
Sbjct: 119 SALDYLHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK---EGIKDGATMKX---FC 170
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 171 GTPEYLAPE 179

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 666 ENLIGSGSFGSV---LHNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSC 711
           E  +G+G FG V    +N+ T            S ++F+AE   ++ ++H  LVKL    
Sbjct: 20  EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV 79
Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVV 764
           +       E + ++ EF++ GSL D++  +  ++  +   +D+     E          +
Sbjct: 80  TK------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI 133
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFL 792
           H DL+  NIL+   +  K+ DFGLAR +
Sbjct: 134 HRDLRAANILVSASLVCKIADFGLARVI 161

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 43/169 (25%)
Query: 658 RATGNFSHENLIGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVR 700
           R   +F    ++G G+FG V+                 H E   S  + ++E   L ++ 
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLS--TILSEVXLLASLN 60
Query: 701 HRNLVK----------LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----- 745
           H+ +V+           +   +++  K+  F+    E+  N +L D IH E  N+     
Sbjct: 61  HQYVVRYYAAWLERRNFVKPXTAVKKKSTLFIQX--EYCENRTLYDLIHSENLNQQRDEY 118
Query: 746 ----LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 I  AL Y+H+     ++H +LKP NI +DE    K+GDFGLA+
Sbjct: 119 WRLFRQILEALSYIHSQG---IIHRNLKPXNIFIDESRNVKIGDFGLAK 164

>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes Length = 290

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSA 751
           E E LRN+ H N+VK    C+  D  N   + L+ EFL +GSL +++  + KN++++   
Sbjct: 61  EIEILRNLYHENIVKYKGICTE-DGGNG--IKLIMEFLPSGSLKEYL-PKNKNKINLKQQ 116
Query: 752 LDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           L Y    C+          VH DL   N+L++ E   K+GDFGL +
Sbjct: 117 LKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 162

>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 11/106 (10%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSA 751
           E E LRN+ H N+VK    C+  D  N   + L+ EFL +GSL +++  + KN++++   
Sbjct: 73  EIEILRNLYHENIVKYKGICTE-DGGNG--IKLIMEFLPSGSLKEYL-PKNKNKINLKQQ 128
Query: 752 LDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           L Y    C+          VH DL   N+L++ E   K+GDFGL +
Sbjct: 129 LKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTK 174

>pdb|2R5T|A Chain A, Crystal Structure Of Inactive Serum And Glucocorticoid- Regulated Kinase 1 In Complex With Amp-Pnp Length = 373

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 42/185 (22%)
Query: 662 NFSHENLIGSGSFGSVL----------HNERTGSWKSFIAECET----------LRNVRH 701
           +F    +IG GSFG VL          +  +    K+ + + E           L+NV+H
Sbjct: 39  DFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKH 98
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALD 753
             LV L  S  + D      L  V ++++ G L   +  E        R    +I SAL 
Sbjct: 99  PFLVGLHFSFQTADK-----LYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALG 153
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YLH+   + +V+ DLKP NILLD +    + DFGL +      +N    S+T  F G+  
Sbjct: 154 YLHS---LNIVYRDLKPENILLDSQGHIVLTDFGLCK------ENIEHNSTTSTFCGTPE 204
Query: 814 YVPPE 818
           Y+ PE
Sbjct: 205 YLAPE 209

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F G+  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDAFCGAPPYAAPELFQGKK 188

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 27/146 (18%)
Query: 666 ENLIGSGSFGSVL---HNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSC 711
           E  +G+G FG V    +N+ T            S ++F+AE   ++ ++H  LVKL    
Sbjct: 187 EKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVV 246
Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVV 764
           +       E + ++ EF++ GSL D++  +  ++  +   +D+     E          +
Sbjct: 247 TK------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYI 300
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLAR 790
           H DL+  NIL+   +  K+ DFGLAR
Sbjct: 301 HRDLRAANILVSASLVCKIADFGLAR 326

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 109 RMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F GS  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDEFCGSPPYAAPELFQGKK 188

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 27/145 (18%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G  K              +F+AE   ++ ++H+ LV+L    +  
Sbjct: 17  LGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ- 75
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E++ NGSL D++      +L I   LD      E          +H +
Sbjct: 76  -----EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRN 130
Query: 768 LKPGNILLDEEMTAKVGDFGLARFL 792
           L+  NIL+ + ++ K+ DFGLAR +
Sbjct: 131 LRAANILVSDTLSCKIADFGLARLI 155

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 25/149 (16%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGER 742
           S +    E   ++ + H N+VKL     +  +     L L+ E+ S G + D++  HG  
Sbjct: 57  SLQKLFREVRIMKILNHPNIVKLFEVIETEKT-----LYLIMEYASGGEVFDYLVAHGRM 111
Query: 743 KNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +       
Sbjct: 112 KEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFS------- 161
Query: 797 DNQSSISST-HVFMGSIGYVPPEYGLGER 824
            N+ ++      F G+  Y  PE   G++
Sbjct: 162 -NEFTVGGKLDAFCGAPPYAAPELFQGKK 189

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E   ++ + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 47  SSSLQKLFREVRIMKVLNHPNIVKLFEVIETEKT-----LYLVMEYASGGEVFDYLVAHG 101
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +M  K+ DFG +     
Sbjct: 102 WMKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADMNIKIADFGFS----- 153
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F GS  Y  PE   G++
Sbjct: 154 ---NEFTFGNKLDTFCGSPPYAAPELFQGKK 181

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 38/187 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK--------------SFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V      G+ K              SF+ E + ++ ++H  LV+L    S  
Sbjct: 17  LGNGQFGEVWMGTWNGNTKVAIKTLKPGTMSPESFLEEAQIMKKLKHDKLVQLYAVVSE- 75
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIH-GERK-----NELD----ITSALDYLHNDCEVPVV 764
                E + +V E+++ GSL D++  GE +     N +D    + + + Y+     +  +
Sbjct: 76  -----EPIYIVTEYMNKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIE---RMNYI 127
Query: 765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           H DL+  NIL+   +  K+ DFGLAR L+E  DN+ +      F   I +  PE  L  R
Sbjct: 128 HRDLRSANILVGNGLICKIADFGLAR-LIE--DNEXTARQGAKF--PIKWTAPEAALYGR 182
Query: 825 PSTAGDV 831
            +   DV
Sbjct: 183 FTIKSDV 189

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 13/112 (11%)
Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
           +F+AE   ++ ++H+ LV+L    +       E + ++ E++ NGSL D++      +L 
Sbjct: 54  AFLAEANLMKQLQHQRLVRLYAVVTQ------EPIYIITEYMENGSLVDFLKTPSGIKLT 107
Query: 748 ITSALDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           I   LD      E          +H DL+  NIL+ + ++ K+ DFGLAR +
Sbjct: 108 INKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLI 159

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 35/163 (21%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETLRNV 699
           E+ R      H+  +G G +G V                  E T   + F+ E   ++ +
Sbjct: 7   EMERTDITMKHK--LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEI 64
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------IT 749
           +H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+           I+
Sbjct: 65  KHPNLVQLLGVCT----REPPFYIII-EFMTYGNLLDYLRECNRQEVSAVVLLYMATQIS 119
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 120 SAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 159

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NI++
Sbjct: 110 IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMI 166
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 167 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 219

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 33/167 (19%)
Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECET 695
           +S D+      + + ++ +G G +G V                  E T   + F+ E   
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV 60
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           ++ ++H NLV+L+  C+    +   F  ++ EF++ G+L D++    + E+         
Sbjct: 61  MKEIKHPNLVQLLGVCT----REPPFY-IITEFMTYGNLLDYLRECNRQEVSAVVLLYMA 115
Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 116 TQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLM 159

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/182 (29%), Positives = 77/182 (42%), Gaps = 41/182 (22%)
Query: 669 IGSGSFGSVLHNERTGS-----WKSF-------------IAECETLRNVRHRNLVKLITS 710
           IG+GS+G      R        WK               ++E   LR ++H N+V+    
Sbjct: 14  IGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDR 73
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-LD----------ITSALDYLH-- 756
              +D  N   L +V E+   G L   I  G ++ + LD          +T AL   H  
Sbjct: 74  I--IDRTNTT-LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR 130
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +D    V+H DLKP N+ LD +   K+GDFGLAR L    D          F+G+  Y+ 
Sbjct: 131 SDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAKE------FVGTPYYMS 184
Query: 817 PE 818
           PE
Sbjct: 185 PE 186

>pdb|1GZK|A Chain A, Molecular Mechanism For The Regulation Of Protein Kinase B Akt By Hydrophobic Motif Phosphorylation Length = 315

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 66  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 119 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKTFCGTP 169
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 170 EYLAPE 175

>pdb|1MRV|A Chain A, Crystal Structure Of An Inactive Akt2 Kinase Domain Length = 339

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 9   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 68
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 69  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 121
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 122 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKTFCGTP 172
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 173 EYLAPE 178

>pdb|1GZN|A Chain A, Structure Of Pkb Kinase Domain Length = 335

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 66  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 119 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKTFCGTP 169
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 170 EYLAPE 175

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMI 149
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMI 149
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 51/213 (23%)
Query: 666 ENLIGSGSFGSVLHNERTGSWK--------------------SFIAECETLRNVRHRNLV 705
           E +IG+G FG V         K                     F++E   +    H N++
Sbjct: 19  EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNII 78
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALD 753
           +L      + + +M  + L  EF+ NG+L  ++   R N+              I S + 
Sbjct: 79  RL----EGVVTNSMPVMILT-EFMENGALDSFL---RLNDGQFTVIQLVGMLRGIASGMR 130
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YL    E+  VH DL   NIL++  +  KV DFGL+RFL E   + +  SS    +G  G
Sbjct: 131 YL---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSS----LG--G 181
Query: 814 YVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            +P  +   E  + A    TS S A  + IV W
Sbjct: 182 KIPIRWTAPE--AIAFRKFTSASDAWSYGIVMW 212

>pdb|1O6K|A Chain A, Structure Of Activated Form Of Pkb Kinase Domain S474d With Gsk3 Peptide And Amp-Pnp Length = 336

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 66  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 119 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKXFCGTP 169
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 170 EYLAPE 175

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMI 149
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>pdb|3E87|A Chain A, Crystal Structures Of The Kinase Domain Of Akt2 In Complex With Atp- Competitive Inhibitors Length = 335

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 66  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 119 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKXFCGTP 169
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 170 EYLAPE 175

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH----- 739
           S    + E + +    H N+V   TS    D      L LV + LS GS+ D I      
Sbjct: 51  SMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE-----LWLVMKLLSGGSVLDIIKHIVAK 105
Query: 740 GERKNEL-----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           GE K+ +           ++   L+YLH + ++   H D+K GNILL E+ + ++ DFG+
Sbjct: 106 GEHKSGVLDESTIATILREVLEGLEYLHKNGQI---HRDVKAGNILLGEDGSVQIADFGV 162
Query: 789 ARFLLERVD-NQSSISSTHVFMGSIGYVPPE 818
           + FL    D  ++ +  T  F+G+  ++ PE
Sbjct: 163 SAFLATGGDITRNKVRKT--FVGTPCWMAPE 191

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 27/151 (17%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH----- 739
           S    + E + +    H N+V   TS    D      L LV + LS GS+ D I      
Sbjct: 56  SMDELLKEIQAMSQCHHPNIVSYYTSFVVKDE-----LWLVMKLLSGGSVLDIIKHIVAK 110
Query: 740 GERKNEL-----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           GE K+ +           ++   L+YLH + ++   H D+K GNILL E+ + ++ DFG+
Sbjct: 111 GEHKSGVLDESTIATILREVLEGLEYLHKNGQI---HRDVKAGNILLGEDGSVQIADFGV 167
Query: 789 ARFLLERVD-NQSSISSTHVFMGSIGYVPPE 818
           + FL    D  ++ +  T  F+G+  ++ PE
Sbjct: 168 SAFLATGGDITRNKVRKT--FVGTPCWMAPE 196

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANIMI 149
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein Kina Length = 313

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 49/215 (22%)
Query: 667 NLIGSGSFGSV---------------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
            ++G G FGSV                     L N      + F++E   +++  H N++
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------------KNELDITSA 751
           +L+  C  + S+ +    ++  F+  G L  ++   R              K  +DI   
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG 159
Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           ++YL N      +H DL   N +L ++MT  V DFGL++ +          S  +   G 
Sbjct: 160 MEYLSNR---NFLHRDLAARNCMLRDDMTVCVADFGLSKKI---------YSGDYYRQGR 207
Query: 812 IGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           I  +P ++   E  S A  V TS+S    F +  W
Sbjct: 208 IAKMPVKWIAIE--SLADRVYTSKSDVWAFGVTMW 240

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 724 LVYEFLSNGSLGDWIHGE------RKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E      R  E+  D   AL++ H +    ++H D+KP NIL+
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNG---IIHRDVKPANILI 149
Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S+  T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVVDFGIARAI---ADSGNSVXQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>pdb|2JDO|A Chain A, Structure Of Pkb-Beta (Akt2) Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 342

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 11  DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 70
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 71  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 123
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 124 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKXFCGTP 174
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 175 EYLAPE 180

>pdb|1O6L|A Chain A, Crystal Structure Of An Activated Akt/protein Kinase B (pkb-pif Chimera) Ternary Complex With Amp-pnp And Gsk3 Peptide Length = 337

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 81/186 (43%), Gaps = 45/186 (24%)
Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSF-----------------IAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG + +                  + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSAL 752
            L  L  +  + D      L  V E+ + G L  + H  R+             +I SAL
Sbjct: 66  FLTALKYAFQTHDR-----LCFVMEYANGGEL--FFHLSRERVFTEERARFYGAEIVSAL 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH+     VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+ 
Sbjct: 119 EYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKXFCGTP 169
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 170 EYLAPE 175

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G+FG V                  + NE+ G   + + E + L+ ++H N+V LI  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 711 CSSLDS---KNMEFLALVYEFLSNGSLG-------DWIHGERKNELD-ITSALDYLHNDC 759
           C +  S   +    + LV++F  +   G        +   E K  +  + + L Y+H + 
Sbjct: 86  CRTKASPYNRCKASIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN- 144
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              ++H D+K  N+L+  +   K+ DFGLAR      ++Q +     V   ++ Y PPE 
Sbjct: 145 --KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVV--TLWYRPPEL 200
Query: 820 GLGER 824
            LGER
Sbjct: 201 LLGER 205

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR----------HRNLVKLITS- 710
           +FS   +IG G FG V    +  + K +  +C   + ++           R ++ L+++ 
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 249
Query: 711 ------CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLH 756
                 C S      + L+ + + ++ G L   +  HG       R    +I   L+++H
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH 309
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           N     VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ 
Sbjct: 310 NRF---VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMA 358
Query: 817 PE 818
           PE
Sbjct: 359 PE 360

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR----------HRNLVKLITS- 710
           +FS   +IG G FG V    +  + K +  +C   + ++           R ++ L+++ 
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 249
Query: 711 ------CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLH 756
                 C S      + L+ + + ++ G L   +  HG       R    +I   L+++H
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH 309
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           N     VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ 
Sbjct: 310 NRF---VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMA 358
Query: 817 PE 818
           PE
Sbjct: 359 PE 360

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR----------HRNLVKLITS- 710
           +FS   +IG G FG V    +  + K +  +C   + ++           R ++ L+++ 
Sbjct: 189 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 248
Query: 711 ------CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLH 756
                 C S      + L+ + + ++ G L   +  HG       R    +I   L+++H
Sbjct: 249 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH 308
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           N     VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ 
Sbjct: 309 NRF---VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMA 357
Query: 817 PE 818
           PE
Sbjct: 358 PE 359

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR----------HRNLVKLITS- 710
           +FS   +IG G FG V    +  + K +  +C   + ++           R ++ L+++ 
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 249
Query: 711 ------CSSLDSKNMEFLALVYEFLSNGSLGDWI--HG------ERKNELDITSALDYLH 756
                 C S      + L+ + + ++ G L   +  HG       R    +I   L+++H
Sbjct: 250 DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMH 309
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           N     VV+ DLKP NILLDE    ++ D GLA           S    H  +G+ GY+ 
Sbjct: 310 NRF---VVYRDLKPANILLDEHGHVRISDLGLA--------CDFSKKKPHASVGTHGYMA 358
Query: 817 PE 818
           PE
Sbjct: 359 PE 360

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 48/193 (24%)
Query: 663 FSHENLIGSGSFGSVL--HNERT---------------GSWKSFIAECETLRNVRHRNLV 705
           +   +++G+G+F  V+   ++RT               G   S   E   L  ++H N+V
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIV 79
Query: 706 KLITSCSSLDS--KNMEFLALVYEFLSNGSLGDWI-----HGERKNELDITSALD---YL 755
                  +LD   ++   L L+ + +S G L D I     + ER     I   LD   YL
Sbjct: 80  -------ALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYL 132
Query: 756 HNDCEVPVVHSDLKPGNIL---LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           H   ++ +VH DLKP N+L   LDE+    + DFGL+     ++++  S+ ST    G+ 
Sbjct: 133 H---DLGIVHRDLKPENLLYYSLDEDSKIMISDFGLS-----KMEDPGSVLSTAC--GTP 182
Query: 813 GYVPPEYGLGERP 825
           GYV PE  L ++P
Sbjct: 183 GYVAPEV-LAQKP 194

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 33/165 (20%)
Query: 653 YDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETLR 697
           YD+      + + ++ +G G +G V                  E T   + F+ E   ++
Sbjct: 251 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK 310
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD---------- 747
            ++H NLV+L+  C+           ++ EF++ G+L D++    + E++          
Sbjct: 311 EIKHPNLVQLLGVCTREPP-----FYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQ 365
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           I+SA++YL        +H +L   N L+ E    KV DFGL+R +
Sbjct: 366 ISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLM 407

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 80/199 (40%), Gaps = 46/199 (23%)
Query: 666 ENLIGSGSFGSVLHNERTGSWKSFIAE--------CETLRNVR----------HRNLVKL 707
           E +IG G FG V      G   +  A          +T+ NVR          H N++ L
Sbjct: 12  EEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCE 760
              C  L   N   L LV EF   G L   + G+R          + I   ++YLH++  
Sbjct: 72  RGVC--LKEPN---LCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAI 126
Query: 761 VPVVHSDLKPGNILLDEEM--------TAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           VP++H DLK  NIL+ +++          K+ DFGLAR    R    S+        G+ 
Sbjct: 127 VPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR-EWHRTTKMSA-------AGAY 178
Query: 813 GYVPPEYGLGERPSTAGDV 831
            ++ PE       S   DV
Sbjct: 179 AWMAPEVIRASMFSKGSDV 197

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G+FG V                  + NE+ G   + + E + L+ ++H N+V LI  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 711 CSSLDS---KNMEFLALVYEFLSNGSLG-------DWIHGERKNELD-ITSALDYLHNDC 759
           C +  S   +    + LV++F  +   G        +   E K  +  + + L Y+H + 
Sbjct: 86  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN- 144
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              ++H D+K  N+L+  +   K+ DFGLAR      ++Q +     V   ++ Y PPE 
Sbjct: 145 --KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVV--TLWYRPPEL 200
Query: 820 GLGER 824
            LGER
Sbjct: 201 LLGER 205

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 669 IGSGSFGSV---LHNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V    +N  T            S ++F+ E   ++ ++H  LV+L    +  
Sbjct: 20  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVT-- 77
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ EF++ GSL D++  +   ++ +   +D+     E          +H D
Sbjct: 78  ---KEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 134
Query: 768 LKPGNILLDEEMTAKVGDFGLARFL 792
           L+  N+L+ E +  K+ DFGLAR +
Sbjct: 135 LRAANVLVSESLMCKIADFGLARVI 159

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G+FG V                  + NE+ G   + + E + L+ ++H N+V LI  
Sbjct: 26  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 85
Query: 711 CSSLDS---KNMEFLALVYEFLSNGSLG-------DWIHGERKNELD-ITSALDYLHNDC 759
           C +  S   +    + LV++F  +   G        +   E K  +  + + L Y+H + 
Sbjct: 86  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN- 144
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              ++H D+K  N+L+  +   K+ DFGLAR      ++Q +     V   ++ Y PPE 
Sbjct: 145 --KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVV--TLWYRPPEL 200
Query: 820 GLGER 824
            LGER
Sbjct: 201 LLGER 205

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 33/165 (20%)
Query: 653 YDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAECETLR 697
           YD+      + + ++ +G G +G V                  E T   + F+ E   ++
Sbjct: 212 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMK 271
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------D 747
            ++H NLV+L+  C+           ++ EF++ G+L D++    + E+           
Sbjct: 272 EIKHPNLVQLLGVCTREPP-----FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ 326
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           I+SA++YL        +H +L   N L+ E    KV DFGL+R +
Sbjct: 327 ISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLM 368

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 34/185 (18%)
Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G+FG V                  + NE+ G   + + E + L+ ++H N+V LI  
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84
Query: 711 CSSLDS---KNMEFLALVYEFLSNGSLG-------DWIHGERKNELD-ITSALDYLHNDC 759
           C +  S   +    + LV++F  +   G        +   E K  +  + + L Y+H + 
Sbjct: 85  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN- 143
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              ++H D+K  N+L+  +   K+ DFGLAR      ++Q +     V   ++ Y PPE 
Sbjct: 144 --KILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXNRVV--TLWYRPPEL 199
Query: 820 GLGER 824
            LGER
Sbjct: 200 LLGER 204

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 91/215 (42%), Gaps = 55/215 (25%)
Query: 666 ENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNVRHRN 703
           E +IG+G FG V                       + ER    + F++E   +    H N
Sbjct: 21  EEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQR--REFLSEASIMGQFEHPN 78
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSA 751
           +++L      + + +M  + L  EF+ NG+L  ++   R N+              I S 
Sbjct: 79  IIRL----EGVVTNSMPVMILT-EFMENGALDSFL---RLNDGQFTVIQLVGMLRGIASG 130
Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           + YL    E+  VH DL   NIL++  +  KV DFGL+RFL E   + +  SS    +G 
Sbjct: 131 MRYL---AEMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETSS----LG- 182
Query: 812 IGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            G +P  +   E  + A    TS S A  + IV W
Sbjct: 183 -GKIPIRWTAPE--AIAFRKFTSASDAWSYGIVMW 214

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 36/159 (22%)
Query: 666 ENLIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLV 705
           + +IG G FG V H E                         ++F+ E   +R + H N++
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLH 756
            LI     L  + +  + L Y  + +G L  +I   ++N          L +   ++YL 
Sbjct: 86  ALIGIM--LPPEGLPHVLLPY--MCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYL- 140
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
              E   VH DL   N +LDE  T KV DFGLAR +L+R
Sbjct: 141 --AEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDR 177

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 43/167 (25%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWK-------------------SFIAECET 695
           E+ R      H+  +G G +G V      G WK                    F+ E   
Sbjct: 28  EMERTDITMKHK--LGGGQYGEVY----VGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAV 81
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------- 746
           ++ ++H NLV+L+  C+ L+        +V E++  G+L D++    + E+         
Sbjct: 82  MKEIKHPNLVQLLGVCT-LEPP----FYIVTEYMPYGNLLDYLRECNREEVTAVVLLYMA 136
Query: 747 -DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             I+SA++YL        +H DL   N L+ E    KV DFGL+R +
Sbjct: 137 TQISSAMEYLEKK---NFIHRDLAARNCLVGENHVVKVADFGLSRLM 180

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+  H N+V + +S    D      L +V EFL  G+L D +   R NE      
Sbjct: 92  EVVIMRDYHHDNVVDMYSSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIATV 146
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL YLHN     V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 147 CLSVLRALSYLHNQG---VIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKXLVG 203
Query: 805 THVFMG 810
           T  +M 
Sbjct: 204 TPYWMA 209

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 9/72 (12%)
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++  ALD+LH+   + +++ DLKP NILLDEE   K+ DFGL++   E +D++    S  
Sbjct: 135 ELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYS-- 186
Query: 807 VFMGSIGYVPPE 818
            F G++ Y+ PE
Sbjct: 187 -FCGTVEYMAPE 197

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 9/72 (12%)
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++  ALD+LH+   + +++ DLKP NILLDEE   K+ DFGL++   E +D++    S  
Sbjct: 134 ELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAYS-- 185
Query: 807 VFMGSIGYVPPE 818
            F G++ Y+ PE
Sbjct: 186 -FCGTVEYMAPE 196

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELDITS 750
           E + L  V H  +VKL  +  +        L L+ +FL  G L   +  E    E D+  
Sbjct: 76  ERDILVEVNHPFIVKLHYAFQTEGK-----LYLILDFLRGGDLFTRLSKEVMFTEEDVKF 130
Query: 751 -------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
                  ALD+LH+   + +++ DLKP NILLDEE   K+ DFGL++   E +D++    
Sbjct: 131 YLAELALALDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSK---ESIDHEKKAY 184
Query: 804 STHVFMGSIGYVPPE 818
           S   F G++ Y+ PE
Sbjct: 185 S---FCGTVEYMAPE 196

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 55  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 114
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 115 LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 170
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 171 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 204

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 56  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 115
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 116 LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 171
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 172 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 205

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 667 NLIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVK 706
            +IG G FG V H                        G    F+ E   +++  H N++ 
Sbjct: 28  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL +
Sbjct: 88  LLGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS 143
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                 VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 144 K---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 178

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 96  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 151
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 152 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 667 NLIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVK 706
            +IG G FG V H                        G    F+ E   +++  H N++ 
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL +
Sbjct: 93  LLGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS 148
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                 VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 149 K---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 183

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 97  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 152
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 153 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186

>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Inactive Double Mutant With Selenomethionine Length = 327

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG 740
           + S +    E    + + H N+VKL     +  +     L LV E+ S G + D++  HG
Sbjct: 54  SSSLQKLFREVRIXKVLNHPNIVKLFEVIETEKT-----LYLVXEYASGGEVFDYLVAHG 108
Query: 741 ERKNE------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             K +        I SA+ Y H      +VH DLK  N+LLD +   K+ DFG +     
Sbjct: 109 RXKEKEARAKFRQIVSAVQYCHQKF---IVHRDLKAENLLLDADXNIKIADFGFS----- 160
Query: 795 RVDNQSSISST-HVFMGSIGYVPPEYGLGER 824
              N+ +  +    F G+  Y  PE   G++
Sbjct: 161 ---NEFTFGNKLDAFCGAPPYAAPELFQGKK 188

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 97  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 152
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 153 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 36  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 95
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL + 
Sbjct: 96  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK 151
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 152 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 185

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 98  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 153
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR +L++
Sbjct: 154 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMLDK 187

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 68/145 (46%), Gaps = 26/145 (17%)
Query: 669 IGSGSFGSV---LHNERTG-----------SWKSFIAECETLRNVRHRNLVKLITSCSSL 714
           +G+G FG V    +N  T            S ++F+ E   ++ ++H  LV+L    +  
Sbjct: 21  LGAGQFGEVWMGYYNNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDKLVRLYAVVT-- 78
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSD 767
                E + ++ E+++ GSL D++  +   ++ +   +D+     E          +H D
Sbjct: 79  ---REEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRD 135
Query: 768 LKPGNILLDEEMTAKVGDFGLARFL 792
           L+  N+L+ E +  K+ DFGLAR +
Sbjct: 136 LRAANVLVSESLMCKIADFGLARVI 160

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/190 (28%), Positives = 82/190 (43%), Gaps = 44/190 (23%)
Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAEC----------------ETLRNVRHRNLVK 706
           F    ++GSG+F  V   ++  + K F  +C                  L+ ++H N+V 
Sbjct: 11  FIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVT 70
Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNEL---DITSALDYLHND 758
           L     S          LV + +S G L D I     + E+   L    + SA+ YLH  
Sbjct: 71  LEDIYES-----TTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLH-- 123
Query: 759 CEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
            E  +VH DLKP N+L    +E     + DFGL++        Q+ I ST    G+ GYV
Sbjct: 124 -ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM------EQNGIMSTAC--GTPGYV 174
Query: 816 PPEYGLGERP 825
            PE  L ++P
Sbjct: 175 APEV-LAQKP 183

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 77/205 (37%), Gaps = 49/205 (23%)
Query: 645 KVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNE-------------------RTGS 685
           K   P + Y+ L     NF  E  IG G F  V                          +
Sbjct: 20  KALRPDMGYNTL----ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKA 75
Query: 686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE 745
               I E + L+ + H N++K   S    +  N     +V E    G L   I   +K +
Sbjct: 76  RADCIKEIDLLKQLNHPNVIKYYASFIEDNELN-----IVLELADAGDLSRMIKHFKKQK 130
Query: 746 ------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
                       + + SAL+++H+     V+H D+KP N+ +      K+GD GL RF  
Sbjct: 131 RLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF- 186
Query: 794 ERVDNQSSISSTHVFMGSIGYVPPE 818
                 S  ++ H  +G+  Y+ PE
Sbjct: 187 -----SSKTTAAHSLVGTPYYMSPE 206

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 36/157 (22%)
Query: 664 SHENL--IGSGSFGSVL--HNERTG---SWKSFIA-------------ECETLRNVRHRN 703
            +ENL  +G GS+G V+   N+ TG   + K F+              E + L+ +RH N
Sbjct: 26  KYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHEN 85
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDW--------IHGERKNELDITSALDYL 755
           LV L+  C     K  +   LV+EF+ +  L D             +K    I + + + 
Sbjct: 86  LVNLLEVC-----KKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFC 140
Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           H+     ++H D+KP NIL+ +    K+ DFG AR L
Sbjct: 141 HSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTL 174

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 667 NLIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVK 706
            +IG G FG V H                        G    F+ E   +++  H N++ 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL +
Sbjct: 91  LLGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS 146
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                 VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 147 K---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 181

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 36/158 (22%)
Query: 667 NLIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVK 706
            +IG G FG V H                        G    F+ E   +++  H N++ 
Sbjct: 34  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHN 757
           L+  C  L S+    + L Y  + +G L ++I  E  N          L +   + YL +
Sbjct: 94  LLGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLAS 149
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                 VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 150 K---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKXQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR 173

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 80/171 (46%), Gaps = 21/171 (12%)
Query: 416 GIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE 475
           G+P+ +  L  L ++ LS N       IS  NF SL  +      I GN+ K  L     
Sbjct: 289 GLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHL-----YIRGNVKK--LHLGVG 341
Query: 476 EISRLENVVTIDLSDNSLSGNLPNS--LKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
            + +L N+ T+DLS N +  +   S  LKN   L+ L +++N+  G       E   LE+
Sbjct: 342 CLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLEL 401
Query: 534 LDLSSNKLSGSIP-SDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHL 583
           LDL+  +L  + P S  QNL  L+ LNLT+            F + SN HL
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTY-----------CFLDTSNQHL 441

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 61/120 (50%), Gaps = 17/120 (14%)
Query: 682 RTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--H 739
           R+G WK    E + LR + H +++K    C     K+++   LV E++  GSL D++  H
Sbjct: 60  RSG-WKQ---EIDILRTLYHEHIIKYKGCCEDQGEKSLQ---LVMEYVPLGSLRDYLPRH 112
Query: 740 GERKNEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                +L      I   + YLH+      +H +L   N+LLD +   K+GDFGLA+ + E
Sbjct: 113 SIGLAQLLLFAQQICEGMAYLHSQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPE 169

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 47/211 (22%)
Query: 666 ENLIGSGSFGSVL--HNERTGSWKSFIAECETLRN----VRHRNLVKLITSCSSLDSKNM 719
           E +IG+G FG V   H +  G  + F+A  +TL++     + R+ +   +     D  N+
Sbjct: 38  EQVIGAGEFGEVCSGHLKLPGKREIFVA-IKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 96
Query: 720 EFLA----------LVYEFLSNGSLGDWIHGERKNELDIT------------SALDYLHN 757
             L           ++ EF+ NGSL  ++   R+N+   T            + + YL  
Sbjct: 97  IHLEGVVTKSTPVMIITEFMENGSLDSFL---RQNDGQFTVIQLVGMLRGIAAGMKYL-- 151
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS--IGYV 815
             ++  VH DL   NIL++  +  KV DFGL+RFL    D+ S  + T    G   I + 
Sbjct: 152 -ADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL---EDDTSDPTYTSALGGKIPIRWT 207
Query: 816 PPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            PE     + ++A DV         + IV W
Sbjct: 208 APEAIQYRKFTSASDV-------WSYGIVMW 231

>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I) Length = 327

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 26/138 (18%)
Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---- 746
           AE   L  V+H  +V LI +  +        L L+ E+LS G L  ++  ER+       
Sbjct: 70  AERNILEEVKHPFIVDLIYAFQTGGK-----LYLILEYLSGGEL--FMQLEREGIFMEDT 122
Query: 747 ------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
                 +I+ AL +LH      +++ DLKP NI+L+ +   K+ DFGL +      ++  
Sbjct: 123 ACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCK------ESIH 173
Query: 801 SISSTHVFMGSIGYVPPE 818
             + TH F G+I Y+ PE
Sbjct: 174 DGTVTHTFCGTIEYMAPE 191

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 28  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 79
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 80  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 131
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 132 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR 184

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 40  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 91
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 92  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 143
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 144 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 196

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 40  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 91
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 92  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 143
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 144 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 196

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 17/122 (13%)
Query: 680 NERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI- 738
             R+G WK    E + LR + H +++K    C    + +++   LV E++  GSL D++ 
Sbjct: 75  QHRSG-WKQ---EIDILRTLYHEHIIKYKGCCEDAGAASLQ---LVMEYVPLGSLRDYLP 127
Query: 739 -HGERKNEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            H     +L      I   + YLH       +H DL   N+LLD +   K+GDFGLA+ +
Sbjct: 128 RHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184
Query: 793 LE 794
            E
Sbjct: 185 PE 186

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 37  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 88
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 89  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 140
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 29  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 80
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 81  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 132
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 29  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 80
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 81  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 132
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 22  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 73
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 74  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 125
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR 178

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 36  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 87
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 88  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 139
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 140 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 192

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 44/195 (22%)
Query: 663 FSHENLIGSGSFGSVL--HNERT---------------GSWKSFIAECETLRNVRHRNLV 705
           +   +++G+G+F  V+   ++RT               G   S   E   L  ++H N+V
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIV 79
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNE---LDITSALDYLHN 757
            L     S        L L+ + +S G L D I     + ER        +  A+ YLH+
Sbjct: 80  ALDDIYESGGH-----LYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD 134
Query: 758 DCEVPVVHSDLKPGNIL---LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
              + +VH DLKP N+L   LDE+    + DFGL+     ++++  S+ ST    G+ GY
Sbjct: 135 ---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLS-----KMEDPGSVLSTAC--GTPGY 184
Query: 815 VPPEYGLGERPSTAG 829
           V PE  L ++P +  
Sbjct: 185 VAPEV-LAQKPYSKA 198

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 29  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLS-------KPFQSIIHAKRT- 80
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 81  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 132
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 133 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 185

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKXQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 19  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 70
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 71  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 122
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 75
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 76  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 127
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 14  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 65
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 66  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 117
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 118 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 170

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 15  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 66
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 67  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 118
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 119 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 171

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 28  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 79
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 80  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 131
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 132 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 184

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 19  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 70
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 71  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 122
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 22/135 (16%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELDITS 750
           E + L +V H  +VKL  +  +        L L+ +FL  G L   +  E    E D+  
Sbjct: 80  ERDILADVNHPFVVKLHYAFQTEGK-----LYLILDFLRGGDLFTRLSKEVMFTEEDVKF 134
Query: 751 -------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
                   LD+LH+   + +++ DLKP NILLDEE   K+ DFGL++   E +D++    
Sbjct: 135 YLAELALGLDHLHS---LGIIYRDLKPENILLDEEGHIKLTDFGLSK---EAIDHEKKAY 188
Query: 804 STHVFMGSIGYVPPE 818
           S   F G++ Y+ PE
Sbjct: 189 S---FCGTVEYMAPE 200

>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1 Length = 327

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 26/138 (18%)
Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---- 746
           AE   L  V+H  +V LI +  +        L L+ E+LS G L  ++  ER+       
Sbjct: 70  AERNILEEVKHPFIVDLIYAFQTGGK-----LYLILEYLSGGEL--FMQLEREGIFMEDT 122
Query: 747 ------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
                 +I+ AL +LH      +++ DLKP NI+L+ +   K+ DFGL +      ++  
Sbjct: 123 ACFYLAEISMALGHLHQKG---IIYRDLKPENIMLNHQGHVKLTDFGLCK------ESIH 173
Query: 801 SISSTHVFMGSIGYVPPE 818
             + TH F G+I Y+ PE
Sbjct: 174 DGTVTHXFCGTIEYMAPE 191

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 23  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 75  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 126
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 13  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 64
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 65  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 116
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 75
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 76  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 127
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 22  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 73
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 74  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 125
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 178

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 14  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 65
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 66  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 117
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 118 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 170

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 19  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 70
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 71  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 122
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLAR 175

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 75
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 76  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 127
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 96  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 155
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 156 LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 211
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 212 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 19  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 70
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 71  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 122
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 123 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 175

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 44/195 (22%)
Query: 663 FSHENLIGSGSFGSVL--HNERT---------------GSWKSFIAECETLRNVRHRNLV 705
           +   +++G+G+F  V+   ++RT               G   S   E   L  ++H N+V
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIV 79
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNE---LDITSALDYLHN 757
            L     S        L L+ + +S G L D I     + ER        +  A+ YLH+
Sbjct: 80  ALDDIYESGGH-----LYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD 134
Query: 758 DCEVPVVHSDLKPGNIL---LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
              + +VH DLKP N+L   LDE+    + DFGL+     ++++  S+ ST    G+ GY
Sbjct: 135 ---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLS-----KMEDPGSVLSTAC--GTPGY 184
Query: 815 VPPEYGLGERPSTAG 829
           V PE  L ++P +  
Sbjct: 185 VAPEV-LAQKPYSKA 198

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 24  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 75
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 76  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 127
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 128 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 106/257 (41%), Gaps = 58/257 (22%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HG---- 740
           K F  E E L N++H ++VK    C   D      L +V+E++ +G L  ++  HG    
Sbjct: 62  KDFQREAELLTNLQHEHIVKFYGVCGDGDP-----LIMVFEYMKHGDLNKFLRAHGPDAM 116
Query: 741 --------ERKNEL----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK 782
                   + K EL           I S + YL +      VH DL   N L+   +  K
Sbjct: 117 ILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHRDLATRNCLVGANLLVK 173
Query: 783 VGDFGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDVPTSES 836
           +GDFG++R           + ST  +      M  I ++PPE  +  + +T  DV +   
Sbjct: 174 IGDFGMSR----------DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWS--- 220
Query: 837 FAGEFNIVKW-VESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTE 895
               F ++ W + +   +   Q+ + E+ + +T  + + ++        +  V L C   
Sbjct: 221 ----FGVILWEIFTYGKQPWFQLSNTEVIECIT--QGRVLERPRVCPKEVYDVMLGCWQR 274
Query: 896 SPGGRIGIREALRRLKS 912
            P  R+ I+E  + L +
Sbjct: 275 EPQQRLNIKEIYKILHA 291

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 23  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 75  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 126
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLAR 179

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 22  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 73
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 74  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 125
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 178

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 16  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 67
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 68  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 119
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 120 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 172

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 44/195 (22%)
Query: 663 FSHENLIGSGSFGSVL--HNERT---------------GSWKSFIAECETLRNVRHRNLV 705
           +   +++G+G+F  V+   ++RT               G   S   E   L  ++H N+V
Sbjct: 20  YDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKEALEGKEGSMENEIAVLHKIKHPNIV 79
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNE---LDITSALDYLHN 757
            L     S        L L+ + +S G L D I     + ER        +  A+ YLH+
Sbjct: 80  ALDDIYESGGH-----LYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHD 134
Query: 758 DCEVPVVHSDLKPGNIL---LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
              + +VH DLKP N+L   LDE+    + DFGL+     ++++  S+ ST    G+ GY
Sbjct: 135 ---LGIVHRDLKPENLLYYSLDEDSKIMISDFGLS-----KMEDPGSVLSTAC--GTPGY 184
Query: 815 VPPEYGLGERPSTAG 829
           V PE  L ++P +  
Sbjct: 185 VAPEV-LAQKPYSKA 198

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    +G  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 22  IWEVPERYQNLSPIGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 73
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 74  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 125
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 126 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDXELKILDFGLAR 178

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 17/120 (14%)
Query: 682 RTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--H 739
           R+G WK    E + LR + H +++K    C     K+++   LV E++  GSL D++  H
Sbjct: 60  RSG-WKQ---EIDILRTLYHEHIIKYKGCCEDQGEKSLQ---LVMEYVPLGSLRDYLPRH 112
Query: 740 GERKNEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                +L      I   + YLH       +H +L   N+LLD +   K+GDFGLA+ + E
Sbjct: 113 SIGLAQLLLFAQQICEGMAYLHAQ---HYIHRNLAARNVLLDNDRLVKIGDFGLAKAVPE 169

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 36/165 (21%)
Query: 657 RRATGNFSHENLIGSGSFGSVL----HNERTGSWKSFIA---------------ECETLR 697
           +R  G +     +G GSFG V     +  +      FI+               E   L+
Sbjct: 5   KRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLK 64
Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------IT 749
            +RH +++KL    ++        + +V E+ + G L D+I  +++   D        I 
Sbjct: 65  LLRHPHIIKLYDVITTPTD-----IVMVIEY-AGGELFDYIVEKKRMTEDEGRRFFQQII 118
Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            A++Y H      +VH DLKP N+LLD+ +  K+ DFGL+  + +
Sbjct: 119 CAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 38  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 97
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 98  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 153
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 154 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 187

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 37/157 (23%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALD 753
           +VKL+     + ++N   L LV+EFLS   L D++             +     +   L 
Sbjct: 66  IVKLL---DVIHTENK--LYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQGLA 119
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 120 FCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 97  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 152
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 153 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186

>pdb|2AC5|A Chain A, Structure Of Human Mnk2 Kinase Domain Mutant D228g Length = 316

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 79/167 (47%), Gaps = 24/167 (14%)
Query: 667 NLIGSGSFGSVLHNERTGSWKSFI-AECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL 724
           NLI S  +   +  ++ G  +S +  E E L   + HRN+++LI      D        L
Sbjct: 34  NLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDR-----FYL 88
Query: 725 VYEFLSNGSLGDWIHGERK-NEL-------DITSALDYLHNDCEVPVVHSDLKPGNILLD 776
           V+E +  GS+   IH  R  NEL       D+ SALD+LHN     + H DLKP NIL +
Sbjct: 89  VFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCE 145
Query: 777 ---EEMTAKVGDFGLARFLLERVDNQSSISSTHVF--MGSIGYVPPE 818
              +    K+ DFGL   +    D  S IS+  +    GS  Y+ PE
Sbjct: 146 HPNQVSPVKICDFGLGSGIKLNGDC-SPISTPELLTPCGSAEYMAPE 191

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 42  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 101
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 102 LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 157
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 158 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 191

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 23  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 75  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 126
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 37/157 (23%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALD 753
           +VKL+     + ++N   L LV+EFLS   L D++             +     +   L 
Sbjct: 67  IVKLL---DVIHTENK--LYLVFEFLSM-DLKDFMDASALTGIPLPLIKSYLFQLLQGLA 120
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 121 FCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 37  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 96
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 97  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 152
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 153 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 186

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--R 742
           SW+S   E  +   ++H NL++ I +     +  +E L L+  F   GSL D++ G    
Sbjct: 53  SWQS-EREIFSTPGMKHENLLQFIAAEKRGSNLEVE-LWLITAFHDKGSLTDYLKGNIIT 110
Query: 743 KNEL-----DITSALDYLHNDCEVP----------VVHSDLKPGNILLDEEMTAKVGDFG 787
            NEL      ++  L YLH D  VP          + H D K  N+LL  ++TA + DFG
Sbjct: 111 WNELCHVAETMSRGLSYLHED--VPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFG 168
Query: 788 LARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           LA     R +       TH  +G+  Y+ PE
Sbjct: 169 LAV----RFEPGKPPGDTHGQVGTRRYMAPE 195

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 44/179 (24%)
Query: 669 IGSGSFGSVL-------HNER-----------TGSWKSFIAECETLRNVRHRNLVKLITS 710
           +GSG++G VL       H ER           T S    + E   L+ + H N++KL   
Sbjct: 45  LGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDF 104
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNELD-------ITSALDYLHNDCEVP 762
               D +N     LV E    G L D I H  + NE+D       + S + YLH      
Sbjct: 105 FE--DKRN---YYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---N 156
Query: 763 VVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +VH DLKP N+LL   +++   K+ DFGL+       +NQ  +      +G+  Y+ PE
Sbjct: 157 IVHRDLKPENLLLESKEKDALIKIVDFGLSAVF----ENQKKMKER---LGTAYYIAPE 208

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 36/157 (22%)
Query: 668 LIGSGSFGSVLHNE--------------------RTGSWKSFIAECETLRNVRHRNLVKL 707
           +IG G FG V H                        G    F+ E   +++  H N++ L
Sbjct: 35  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 94
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
           +  C  L S+    + L Y  + +G L ++I  E  N          L +   + +L + 
Sbjct: 95  LGIC--LRSEGSPLVVLPY--MKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK 150
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                VH DL   N +LDE+ T KV DFGLAR + ++
Sbjct: 151 ---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 184

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 667 NLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALV 725
           ++ G GSF +    E     ++ + E + LR V  H N+++L  +      +   F  LV
Sbjct: 51  DVTGGGSFSA---EEVQELREATLKEVDILRKVSGHPNIIQLKDT-----YETNTFFFLV 102
Query: 726 YEFLSNGSLGDWIH-----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT 780
           ++ +  G L D++       E++    + + L+ +    ++ +VH DLKP NILLD++M 
Sbjct: 103 FDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMN 162
Query: 781 AKVGDFGLA 789
            K+ DFG +
Sbjct: 163 IKLTDFGFS 171

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 667 NLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALV 725
           ++ G GSF +    E     ++ + E + LR V  H N+++L  +      +   F  LV
Sbjct: 51  DVTGGGSFSA---EEVQELREATLKEVDILRKVSGHPNIIQLKDT-----YETNTFFFLV 102
Query: 726 YEFLSNGSLGDWIH-----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT 780
           ++ +  G L D++       E++    + + L+ +    ++ +VH DLKP NILLD++M 
Sbjct: 103 FDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMN 162
Query: 781 AKVGDFGLA 789
            K+ DFG +
Sbjct: 163 IKLTDFGFS 171

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 34/172 (19%)
Query: 669 IGSGSFGSV-----LHNERTGSWKSFIAECET-LRNVRHRNLVKLITSCSSL-------- 714
           +G+GSFG V      HN R  + K    E    L+ V H N  +L+ S  +         
Sbjct: 14  LGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWG 73
Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERK--------NELDITSALDYLHNDCEVPVVHS 766
             ++ + + ++ +++  G L   +   ++           ++  AL+YLH+     +++ 
Sbjct: 74  TFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYR 130
Query: 767 DLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           DLKP NILLD+    K+ DFG A+++ +          T+   G+  Y+ PE
Sbjct: 131 DLKPENILLDKNGHIKITDFGFAKYVPD---------VTYXLCGTPDYIAPE 173

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 667 NLIGSGSFGSVLHNERTGSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALV 725
           ++ G GSF +    E     ++ + E + LR V  H N+++L  +      +   F  LV
Sbjct: 38  DVTGGGSFSA---EEVQELREATLKEVDILRKVSGHPNIIQLKDT-----YETNTFFFLV 89
Query: 726 YEFLSNGSLGDWIH-----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT 780
           ++ +  G L D++       E++    + + L+ +    ++ +VH DLKP NILLD++M 
Sbjct: 90  FDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMN 149
Query: 781 AKVGDFGLA 789
            K+ DFG +
Sbjct: 150 IKLTDFGFS 158

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKSQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGL R
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDSELKILDFGLCR 173

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 45/212 (21%)
Query: 659 ATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA---------ECET-------------- 695
           A     +E  IG G FG ++H  R    KS +A         E ET              
Sbjct: 17  ADNEIEYEKQIGKGGFG-LVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 696 -LRNVRHRNLVKLITSCSSLDSKNMEFLA---LVYEFLSNGSLGDWIHGERKNELDITSA 751
            + N+ H N+VKL     +     MEF+    L +  L       W    R   LDI   
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLM-LDIALG 134
Query: 752 LDYLHNDCEVPVVHSDLKPGNIL---LDE--EMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++Y+ N    P+VH DL+  NI    LDE   + AKV DFGL+         Q S+ S  
Sbjct: 135 IEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS---------QQSVHSVS 184
Query: 807 VFMGSIGYVPPEYGLGERPSTAGDVPTSESFA 838
             +G+  ++ PE  +G    +  +   + SFA
Sbjct: 185 GLLGNFQWMAPE-TIGAEEESYTEKADTYSFA 215

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 76/176 (43%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ D+GLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDYGLAR 173

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 35/179 (19%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDE---LRRATGNFSHENLIGSGSFGSVLHNE 681
           +W +  R +    VG  A   VC    SYD    L+ A    S         F S++H +
Sbjct: 46  IWEVPERYQTLSPVGSGAYGSVCS---SYDVKSGLKIAVKKLSR-------PFQSIIHAK 95
Query: 682 RTGSWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWI 738
           RT        E   L++++H N++ L+   T  +SL+  N  +L      L    L + +
Sbjct: 96  RT------YRELRLLKHMKHENVIGLLDVFTPATSLEEFNDVYLVT---HLMGADLNNIV 146
Query: 739 HGERKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             ++  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 147 KCQKLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 202

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 36/175 (20%)
Query: 669 IGSGSFGSVLHNERTGSWKSFI------------------AECETLRNVRHRNLVKLITS 710
           IG GSFG  +  + T   + ++                   E   L N++H N+V+   S
Sbjct: 32  IGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRES 91
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EVPV 763
                S     L +V ++   G L   I+ ++         LD+    C       +  +
Sbjct: 92  FEENGS-----LYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKI 146
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +H D+K  NI L ++ T ++GDFG+AR L       S++      +G+  Y+ PE
Sbjct: 147 LHRDIKSQNIFLTKDGTVQLGDFGIARVL------NSTVELARACIGTPYYLSPE 195

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 121 EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 175
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 176 CLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 232
Query: 805 THVFMG 810
           T  +M 
Sbjct: 233 TPYWMA 238

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 42/204 (20%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFI--------------AECETLRN-- 698
           +++    +F    ++G GSFG V   E   + + F                EC  +    
Sbjct: 12  QIKLKIEDFELHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRV 71
Query: 699 ----VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-------- 746
                 H  L  +   C+    +N+ F   V E+L+ G L   I    K +L        
Sbjct: 72  LSLAWEHPFLTHMF--CTFQTKENLFF---VMEYLNGGDLMYHIQSCHKFDLSRATFYAA 126
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           +I   L +LH+     +V+ DLK  NILLD++   K+ DFG+ +      +N    + T+
Sbjct: 127 EIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCK------ENMLGDAKTN 177
Query: 807 VFMGSIGYVPPEYGLGERPSTAGD 830
            F G+  Y+ PE  LG++ + + D
Sbjct: 178 EFCGTPDYIAPEILLGQKYNHSVD 201

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 37/157 (23%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALD 753
           +VKL+     + ++N   L LV+EFL    L D++             +     +   L 
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFLHQ-DLKDFMDASALTGIPLPLIKSYLFQLLQGLA 117
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 118 FCHSH---RVLHRDLKPENLLINTEGAIKLADFGLAR 151

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 42/204 (20%)
Query: 655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFI--------------AECETLRN-- 698
           +++    +F    ++G GSFG V   E   + + F                EC  +    
Sbjct: 11  QIKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRV 70
Query: 699 ----VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-------- 746
                 H  L  +   C+    +N+ F   V E+L+ G L   I    K +L        
Sbjct: 71  LSLAWEHPFLTHMF--CTFQTKENLFF---VMEYLNGGDLMYHIQSCHKFDLSRATFYAA 125
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
           +I   L +LH+     +V+ DLK  NILLD++   K+ DFG+ +      +N    + T+
Sbjct: 126 EIILGLQFLHSKG---IVYRDLKLDNILLDKDGHIKIADFGMCK------ENMLGDAKTN 176
Query: 807 VFMGSIGYVPPEYGLGERPSTAGD 830
            F G+  Y+ PE  LG++ + + D
Sbjct: 177 XFCGTPDYIAPEILLGQKYNHSVD 200

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 50/214 (23%)
Query: 664 SHENLIGSGSFGSVLHNE-RTGSWKS--------------------FIAECETLRNVRHR 702
           + + +IG+G FG V     +T S K                     F+ E   +    H 
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSAL 752
           N+++L    S         + ++ E++ NG+L  ++  E+  E            I + +
Sbjct: 107 NIIRLEGVISKYKP-----MMIITEYMENGALDKFLR-EKDGEFSVLQLVGMLRGIAAGM 160
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YL N   +  VH DL   NIL++  +  KV DFGL+R L +  +   + S   +    I
Sbjct: 161 KYLAN---MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKI---PI 214
Query: 813 GYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            +  PE     + ++A DV +       F IV W
Sbjct: 215 RWTAPEAISYRKFTSASDVWS-------FGIVMW 241

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 663 FSHENLIGSGSFGSVLH-------------------NERTGSWKSFIAECETLRNVRHRN 703
           FS    IG GSFG+V                      +    W+  I E   L+ +RH N
Sbjct: 56  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 115
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLH 756
            ++    C     ++  +L + Y   S   L + +H +   E++I +        L YLH
Sbjct: 116 TIQY-RGCYL--REHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAVTHGALQGLAYLH 171
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +     ++H D+K GNILL E    K+GDFG A          S ++  + F+G+  ++ 
Sbjct: 172 SHN---MIHRDVKAGNILLSEPGLVKLGDFGSA----------SIMAPANXFVGTPYWMA 218
Query: 817 PE 818
           PE
Sbjct: 219 PE 220

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 198 EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 252
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 253 CLAVLQALSVLHAQG---VIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 309
Query: 805 THVFMG 810
           T  +M 
Sbjct: 310 TPYWMA 315

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 20/148 (13%)
Query: 685 SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--R 742
           SW++   E  +L  ++H N+++ I +     S +++ L L+  F   GSL D++      
Sbjct: 62  SWQNEY-EVYSLPGMKHENILQFIGAEKRGTSVDVD-LWLITAFHEKGSLSDFLKANVVS 119
Query: 743 KNEL-----DITSALDYLHNDC-------EVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            NEL      +   L YLH D        +  + H D+K  N+LL   +TA + DFGLA 
Sbjct: 120 WNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLAL 179
Query: 791 FLLERVDNQSSISSTHVFMGSIGYVPPE 818
               + +   S   TH  +G+  Y+ PE
Sbjct: 180 ----KFEAGKSAGDTHGQVGTRRYMAPE 203

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL--- 746
           E E LR + H ++VK    C     K+++   LV E++  GSL D++  H     +L   
Sbjct: 60  EIEILRTLYHEHIVKYKGCCEDQGEKSVQ---LVMEYVPLGSLRDYLPRHCVGLAQLLLF 116
Query: 747 --DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
              I   + YLH       +H  L   N+LLD +   K+GDFGLA+ + E
Sbjct: 117 AQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPE 163

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 13/110 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL--- 746
           E E LR + H ++VK    C     K+++   LV E++  GSL D++  H     +L   
Sbjct: 61  EIEILRTLYHEHIVKYKGCCEDQGEKSVQ---LVMEYVPLGSLRDYLPRHCVGLAQLLLF 117
Query: 747 --DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
              I   + YLH       +H  L   N+LLD +   K+GDFGLA+ + E
Sbjct: 118 AQQICEGMAYLHAQ---HYIHRALAARNVLLDNDRLVKIGDFGLAKAVPE 164

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 37  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 88
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 89  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 140
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 45/172 (26%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-------- 738
           K F  E E L N++H ++VK    C   D      L +V+E++ +G L  ++        
Sbjct: 60  KDFHREAELLTNLQHEHIVKFYGVCVEGDP-----LIMVFEYMKHGDLNKFLRAHGPDAV 114
Query: 739 ---HGERKNEL----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD 785
               G    EL           I + + YL +      VH DL   N L+ E +  K+GD
Sbjct: 115 LMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVKIGD 171
Query: 786 FGLARFLLERVDNQSSISSTHVF------MGSIGYVPPEYGLGERPSTAGDV 831
           FG++R           + ST  +      M  I ++PPE  +  + +T  DV
Sbjct: 172 FGMSR----------DVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDV 213

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 33/162 (20%)
Query: 659 ATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVR 700
           AT  +     IG G++G+V                  + N   G   S + E   LR + 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 701 ---HRNLVKLITSCSSLDSKNMEFLALVYEFLS-------NGSLGDWIHGERKNEL--DI 748
              H N+V+L+  C++  +     + LV+E +        + +    +  E   +L    
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              LD+LH +C   +VH DLKP NIL+    T K+ DFGLAR
Sbjct: 122 LRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 160

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 33/162 (20%)
Query: 659 ATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVR 700
           AT  +     IG G++G+V                  + N   G   S + E   LR + 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 701 ---HRNLVKLITSCSSLDSKNMEFLALVYEFLS-------NGSLGDWIHGERKNEL--DI 748
              H N+V+L+  C++  +     + LV+E +        + +    +  E   +L    
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              LD+LH +C   +VH DLKP NIL+    T K+ DFGLAR
Sbjct: 122 LRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 160

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 91/211 (43%), Gaps = 47/211 (22%)
Query: 666 ENLIGSGSFGSVL--HNERTGSWKSFIAECETLRN----VRHRNLVKLITSCSSLDSKNM 719
           E +IG+G FG V   H +  G  + F+A  +TL++     + R+ +   +     D  N+
Sbjct: 12  EQVIGAGEFGEVCSGHLKLPGKREIFVA-IKTLKSGYTEKQRRDFLSEASIMGQFDHPNV 70
Query: 720 EFLA----------LVYEFLSNGSLGDWIHGERKNELDIT------------SALDYLHN 757
             L           ++ EF+ NGSL  ++   R+N+   T            + + YL  
Sbjct: 71  IHLEGVVTKSTPVMIITEFMENGSLDSFL---RQNDGQFTVIQLVGMLRGIAAGMKYL-- 125
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS--IGYV 815
             ++  VH  L   NIL++  +  KV DFGL+RFL    D+ S  + T    G   I + 
Sbjct: 126 -ADMNYVHRALAARNILVNSNLVCKVSDFGLSRFL---EDDTSDPTYTSALGGKIPIRWT 181
Query: 816 PPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            PE     + ++A DV         + IV W
Sbjct: 182 APEAIQYRKFTSASDV-------WSYGIVMW 205

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 36  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 87
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 88  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 139
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 140 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 192

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 70/162 (43%), Gaps = 33/162 (20%)
Query: 659 ATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVR 700
           AT  +     IG G++G+V                  + N   G   S + E   LR + 
Sbjct: 2   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLE 61
Query: 701 ---HRNLVKLITSCSSLDSKNMEFLALVYEFLS-------NGSLGDWIHGERKNEL--DI 748
              H N+V+L+  C++  +     + LV+E +        + +    +  E   +L    
Sbjct: 62  AFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQF 121
Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
              LD+LH +C   +VH DLKP NIL+    T K+ DFGLAR
Sbjct: 122 LRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 160

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 37  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 88
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 89  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 140
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 141 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 193

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 43/182 (23%)
Query: 663 FSHENLIGSGSFGSVLH-------------------NERTGSWKSFIAECETLRNVRHRN 703
           FS    IG GSFG+V                      +    W+  I E   L+ +RH N
Sbjct: 17  FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN 76
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLH 756
            ++    C     ++  +L + Y   S   L + +H +   E++I +        L YLH
Sbjct: 77  TIQY-RGCYL--REHTAWLVMEYCLGSASDLLE-VHKKPLQEVEIAAVTHGALQGLAYLH 132
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +     ++H D+K GNILL E    K+GDFG A          S ++  + F+G+  ++ 
Sbjct: 133 SH---NMIHRDVKAGNILLSEPGLVKLGDFGSA----------SIMAPANXFVGTPYWMA 179
Query: 817 PE 818
           PE
Sbjct: 180 PE 181

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 13  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 64
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 65  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 116
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 13  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 64
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 65  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 116
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F++E   ++N+ H ++VKLI           E   ++ E    G LG ++    KN L
Sbjct: 70  EKFMSEAVIMKNLDHPHIVKLIGIIEE------EPTWIIMELYPYGELGHYLE-RNKNSL 122
Query: 747 DITSALDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
            + + + Y    C+       +  VH D+   NIL+      K+GDFGL+R++ +    +
Sbjct: 123 KVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYK 182
Query: 800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           +S++        I ++ PE     R +TA DV
Sbjct: 183 ASVTRL-----PIKWMSPESINFRRFTTASDV 209

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F++E   ++N+ H ++VKLI           E   ++ E    G LG ++    KN L
Sbjct: 54  EKFMSEAVIMKNLDHPHIVKLIGIIEE------EPTWIIMELYPYGELGHYLE-RNKNSL 106
Query: 747 DITSALDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
            + + + Y    C+       +  VH D+   NIL+      K+GDFGL+R++ +    +
Sbjct: 107 KVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYK 166
Query: 800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           +S++        I ++ PE     R +TA DV
Sbjct: 167 ASVTRL-----PIKWMSPESINFRRFTTASDV 193

>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine Kinase 2 Beta (ptk2b) Length = 281

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 19/152 (12%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F++E   ++N+ H ++VKLI           E   ++ E    G LG ++    KN L
Sbjct: 58  EKFMSEAVIMKNLDHPHIVKLIGIIEE------EPTWIIMELYPYGELGHYLE-RNKNSL 110
Query: 747 DITSALDYLHNDCE-------VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
            + + + Y    C+       +  VH D+   NIL+      K+GDFGL+R++ +    +
Sbjct: 111 KVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYK 170
Query: 800 SSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           +S++        I ++ PE     R +TA DV
Sbjct: 171 ASVTRL-----PIKWMSPESINFRRFTTASDV 197

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 45/204 (22%)
Query: 659 ATGNFSHENLIGSGSFGSVLH--NERTGSWKSF---------------IAECETLRNVRH 701
           ++  F     +G+G++ +V    N+ TG + +                I E   ++ ++H
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNG--------SLGDWIHGERKN-----ELDI 748
            N+V+L     + +      L LV+EF+ N         ++G+   G   N     +  +
Sbjct: 63  ENIVRLYDVIHTENK-----LTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQL 117
Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
              L + H   E  ++H DLKP N+L+++    K+GDFGLAR     V+  SS   T   
Sbjct: 118 LQGLAFCH---ENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVT--- 171
Query: 809 MGSIGYVPPEYGLGERP-STAGDV 831
              + Y  P+  +G R  ST+ D+
Sbjct: 172 ---LWYRAPDVLMGSRTYSTSIDI 192

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 34/150 (22%)
Query: 669 IGSGSFGSVLH--NERTGS-------WKSFIAEC---------ETLRNVRHRNLVKLI-- 708
           +GSG++G+V    + RTG+       ++ F +E            L+++RH N++ L+  
Sbjct: 33  VGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDV 92
Query: 709 -TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHNDCE 760
            T   +LD  +     LV  F+    LG  +  E+  E         +   L Y+H    
Sbjct: 93  FTPDETLD--DFTDFYLVMPFMGT-DLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHA--- 146
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             ++H DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 147 AGIIHRDLKPGNLAVNEDCELKILDFGLAR 176

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 27  IWEVPERYQNLAPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 78
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 79  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 130
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 131 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 183

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 173

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 48/211 (22%)
Query: 632 KRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSV---LHNERTGSWKS 688
           +R+ K++   +L K   P+  +D L +          +G GS+GSV   +H E TG    
Sbjct: 12  RRQLKKLDEDSLTK--QPEEVFDVLEK----------LGEGSYGSVYKAIHKE-TGQ--- 55
Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDS-----------KNMEFLALVYEFLSNGSLGDW 737
            +A  +       + ++K I+     DS           KN + L +V E+   GS+ D 
Sbjct: 56  IVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTD-LWIVMEYCGAGSVSDI 114
Query: 738 IHGERKN--ELDITS-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
           I    K   E +I +        L+YLH    +  +H D+K GNILL+ E  AK+ DFG+
Sbjct: 115 IRLRNKTLTEDEIATILQSTLKGLEYLHF---MRKIHRDIKAGNILLNTEGHAKLADFGV 171
Query: 789 ARFLLERVDNQSSISSTHVFMG-----SIGY 814
           A  L + +  ++ +  T  +M       IGY
Sbjct: 172 AGQLTDXMAKRNXVIGTPFWMAPEVIQEIGY 202

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLSFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 12/110 (10%)
Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLS-------NGSLGDWIHGER 742
           +A    L    H N+V+L+  C++  +     + LV+E +        + +    +  E 
Sbjct: 62  VALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAET 121
Query: 743 KNEL--DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             +L       LD+LH +C   +VH DLKP NIL+    T K+ DFGLAR
Sbjct: 122 IKDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLAR 168

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 27/168 (16%)
Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIA-----------ECETLRNVRHRNLVKLITS- 710
           +++  +IG+GSFG V   +   S +  I            E + +R V+H N+V L    
Sbjct: 42  YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFF 101
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHNDC 759
            S+ D K+  FL LV E++         H  +  +             +  +L Y+H+  
Sbjct: 102 YSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHS-- 159
Query: 760 EVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSISSTH 806
            + + H D+KP N+LLD      K+ DFG A+ L+    N S I S +
Sbjct: 160 -IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSXICSRY 206

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 60/207 (28%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR     V      + T
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-----TYT 161
Query: 806 HVFMGSIGYVPPEYGLGER-PSTAGDV 831
           H  + ++ Y  PE  LG +  STA D+
Sbjct: 162 HEVV-TLWYRAPEILLGXKYYSTAVDI 187

>pdb|2AC3|A Chain A, Structure Of Human Mnk2 Kinase Domain Length = 316

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 78/167 (46%), Gaps = 24/167 (14%)
Query: 667 NLIGSGSFGSVLHNERTGSWKSFI-AECETLRNVR-HRNLVKLITSCSSLDSKNMEFLAL 724
           NLI S  +   +  ++ G  +S +  E E L   + HRN+++LI      D        L
Sbjct: 34  NLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDR-----FYL 88
Query: 725 VYEFLSNGSLGDWIHGERK-NEL-------DITSALDYLHNDCEVPVVHSDLKPGNILLD 776
           V+E +  GS+   IH  R  NEL       D+ SALD+LHN     + H DLKP NIL +
Sbjct: 89  VFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCE 145
Query: 777 ---EEMTAKVGDFGLARFLLERVDNQSSISSTHVF--MGSIGYVPPE 818
              +    K+ DF L   +    D  S IS+  +    GS  Y+ PE
Sbjct: 146 HPNQVSPVKICDFDLGSGIKLNGDC-SPISTPELLTPCGSAEYMAPE 191

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+  FGLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILGFGLAR 173

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 669 IGSGSFGSVLH--NERTGS----------------WKSFIAECETLRNVRHRNLVKLI-- 708
           +GSG++GSV    ++R+G                  K    E   L++++H N++ L+  
Sbjct: 50  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDV 109
Query: 709 -TSCSSLDSKNMEFLALVYEFLS---NGSLGDWIHGERKNEL--DITSALDYLHNDCEVP 762
            T  SSL  +N     LV  F+       +G     E+   L   +   L Y+H+     
Sbjct: 110 FTPASSL--RNFYDFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHS---AG 164
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           VVH DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 165 VVHRDLKPGNLAVNEDCELKILDFGLAR 192

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 659 ATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA---------ECET-------------- 695
           A     +E  IG G FG ++H  R    KS +A         E ET              
Sbjct: 17  ADNEIEYEKQIGKGGFG-LVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 696 -LRNVRHRNLVKLITSCSSLDSKNMEFLA---LVYEFLSNGSLGDWIHGERKNELDITSA 751
            + N+ H N+VKL     +     MEF+    L +  L       W    R   LDI   
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLM-LDIALG 134
Query: 752 LDYLHNDCEVPVVHSDLKPGNIL---LDE--EMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++Y+ N    P+VH DL+  NI    LDE   + AKV DFG +         Q S+ S  
Sbjct: 135 IEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGTS---------QQSVHSVS 184
Query: 807 VFMGSIGYVPPEYGLGERPSTAGDVPTSESFA 838
             +G+  ++ PE  +G    +  +   + SFA
Sbjct: 185 GLLGNFQWMAPE-TIGAEEESYTEKADTYSFA 215

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 684 GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK 743
           G  +    E   L+ + H N+VKL+     LD  N + L +V+E ++ G + +    +  
Sbjct: 78  GPIEQVYQEIAILKKLDHPNVVKLV---EVLDDPNEDHLYMVFELVNQGPVMEVPTLKPL 134
Query: 744 NE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
           +E        D+   ++YLH      ++H D+KP N+L+ E+   K+ DFG++
Sbjct: 135 SEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKPSNLLVGEDGHIKIADFGVS 184

>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A Resolution Length = 336

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 82/185 (44%), Gaps = 40/185 (21%)
Query: 668 LIGSGSFGSVLH---NERTGSWK--------SFIAECETLRN--VRHRNLVKLITSCSSL 714
           LIG G +G+V     +ER  + K        +FI E    R   + H N+ + I     +
Sbjct: 20  LIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERV 79
Query: 715 DSK-NMEFLALVYEFLSNGSL--------GDWIHGERKNELDITSALDYLHN-----DCE 760
            +   ME+L LV E+  NGSL         DW+   R     +T  L YLH      D  
Sbjct: 80  TADGRMEYL-LVMEYYPNGSLXKYLSLHTSDWVSSCRLAH-SVTRGLAYLHTELPRGDHY 137
Query: 761 VPVV-HSDLKPGNILLDEEMTAKVGDFGLA------RFLLERVDNQSSISSTHVFMGSIG 813
            P + H DL   N+L+  + T  + DFGL+      R +    ++ ++IS     +G+I 
Sbjct: 138 KPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISE----VGTIR 193
Query: 814 YVPPE 818
           Y+ PE
Sbjct: 194 YMAPE 198

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 35/156 (22%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLS---------NGSLGDWIHGERKNELDITSALDY 754
           +VKL+     + ++N   L LV+EFLS         +   G  +   +     +   L +
Sbjct: 65  IVKLL---DVIHTENK--LYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 119
Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 120 CHSH---RVLHRDLKPENLLINTEGAIKLADFGLAR 152

>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase Iib Isoform 1 (camk2b) Length = 295

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 19/135 (14%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S S        F  LV++ ++ G L  D +  E  +E D   
Sbjct: 53  EARICRLLKHSNIVRLHDSISE-----EGFHYLVFDLVTGGELFEDIVAREYYSEADASH 107
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQSSIS 803
            I   L+ + +  ++ VVH DLKP N+LL  +      K+ DFGLA      ++ Q    
Sbjct: 108 CIQQILEAVLHCHQMGVVHRDLKPENLLLASKCKGAAVKLADFGLA------IEVQGDQQ 161
Query: 804 STHVFMGSIGYVPPE 818
           +   F G+ GY+ PE
Sbjct: 162 AWFGFAGTPGYLSPE 176

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 65  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 110
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 111 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 35/156 (22%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLS---------NGSLGDWIHGERKNELDITSALDY 754
           +VKL+     + ++N   L LV+EFLS         +   G  +   +     +   L +
Sbjct: 67  IVKLL---DVIHTENK--LYLVFEFLSMDLKKFMDASALTGIPLPLIKSYLFQLLQGLAF 121
Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 122 CHSH---RVLHRDLKPENLLINTEGAIKLADFGLAR 154

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ D GLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDAGLAR 173

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 23  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 75  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVT---HLMGADLNNIVKCQ 126
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 127 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 179

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 66  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 111
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 112 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 67  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 112
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 113 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 66  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 111
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 112 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 153

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 45/212 (21%)
Query: 659 ATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA---------ECET-------------- 695
           A     +E  IG G FG ++H  R    KS +A         E ET              
Sbjct: 17  ADNEIEYEKQIGKGGFG-LVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 696 -LRNVRHRNLVKLITSCSSLDSKNMEFLA---LVYEFLSNGSLGDWIHGERKNELDITSA 751
            + N+ H N+VKL     +     MEF+    L +  L       W    R   LDI   
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLM-LDIALG 134
Query: 752 LDYLHNDCEVPVVHSDLKPGNIL---LDE--EMTAKVGDFGLARFLLERVDNQSSISSTH 806
           ++Y+ N    P+VH DL+  NI    LDE   + AKV DF L+         Q S+ S  
Sbjct: 135 IEYMQNQ-NPPIVHRDLRSPNIFLQSLDENAPVCAKVADFSLS---------QQSVHSVS 184
Query: 807 VFMGSIGYVPPEYGLGERPSTAGDVPTSESFA 838
             +G+  ++ PE  +G    +  +   + SFA
Sbjct: 185 GLLGNFQWMAPE-TIGAEEESYTEKADTYSFA 215

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 65  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 110
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 111 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 65  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 110
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 111 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 152

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 8   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 67
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 68  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 113
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 114 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 155

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 64  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 109
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 110 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 151

>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S      +   F  LV++ ++ G L  D +  E  +E D   
Sbjct: 55  EARICRKLQHPNIVRLHDSI-----QEESFHYLVFDLVTGGELFEDIVAREFYSEADASH 109
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I  ++ Y H++    +VH +LKP N+LL  +      K+ DFGLA   +E  D++ 
Sbjct: 110 CIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLA---IEVNDSE- 162
Query: 801 SISSTHVFMGSIGYVPPE 818
              + H F G+ GY+ PE
Sbjct: 163 ---AWHGFAGTPGYLSPE 177

>pdb|3KK9|A Chain A, Camkii Substrate Complex B Length = 282

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S      +   F  LV++ ++ G L  D +  E  +E D   
Sbjct: 54  EARICRKLQHPNIVRLHDSI-----QEESFHYLVFDLVTGGELFEDIVAREFYSEADASH 108
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I  ++ Y H++    +VH +LKP N+LL  +      K+ DFGLA   +E  D++ 
Sbjct: 109 CIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLA---IEVNDSE- 161
Query: 801 SISSTHVFMGSIGYVPPE 818
              + H F G+ GY+ PE
Sbjct: 162 ---AWHGFAGTPGYLSPE 176

>pdb|3KK8|A Chain A, Camkii Substrate Complex A Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S      +   F  LV++ ++ G L  D +  E  +E D   
Sbjct: 55  EARICRKLQHPNIVRLHDSI-----QEESFHYLVFDLVTGGELFEDIVAREFYSEADASH 109
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I  ++ Y H++    +VH +LKP N+LL  +      K+ DFGLA   +E  D++ 
Sbjct: 110 CIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLA---IEVNDSE- 162
Query: 801 SISSTHVFMGSIGYVPPE 818
              + H F G+ GY+ PE
Sbjct: 163 ---AWHGFAGTPGYLSPE 177

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 86/207 (41%), Gaps = 60/207 (28%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 11  NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 70
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 71  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 116
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR     V      + T
Sbjct: 117 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR-----TYT 168
Query: 806 HVFMGSIGYVPPEYGLGER-PSTAGDV 831
           H  + ++ Y  PE  LG +  STA D+
Sbjct: 169 HEVV-TLWYRAPEILLGXKYYSTAVDI 194

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 67  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKTFMDASALTGIPLPLIKSYL 112
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 113 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 67  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 112
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 113 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 11  NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 70
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 71  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 116
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 117 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 158

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 8   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 67
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 68  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 113
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 114 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 155

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MXG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MXG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 669 IGSGSFGSVLH--NERTGS----------------WKSFIAECETLRNVRHRNLVKLI-- 708
           +GSG++GSV    ++R+G                  K    E   L++++H N++ L+  
Sbjct: 32  VGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDV 91
Query: 709 -TSCSSLDSKNMEFLALVYEFLS---NGSLGDWIHGERKNEL--DITSALDYLHNDCEVP 762
            T  SSL  +N     LV  F+       +G     E+   L   +   L Y+H+     
Sbjct: 92  FTPASSL--RNFYDFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHS---AG 146
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           VVH DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 147 VVHRDLKPGNLAVNEDCELKILDFGLAR 174

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MXG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MXG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MXG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 6   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 65
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 66  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 111
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 112 FQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLAR 153

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 68/165 (41%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 5   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 64
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+EFL         H + K  +D ++             
Sbjct: 65  IVKLL---DVIHTENK--LYLVFEFL---------HQDLKKFMDASALTGIPLPLIKSYL 110
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 111 FQLLQGLAFCHSH---RVLHRDLKPENLLINTEGAIKLADFGLAR 152

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 24/136 (17%)
Query: 692 ECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------R 742
           E   LR V  H +++ LI S  S       F+ LV++ +  G L D++  +        R
Sbjct: 149 ETHILRQVAGHPHIITLIDSYES-----SSFMFLVFDLMRKGELFDYLTEKVALSEKETR 203
Query: 743 KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
                +  A+ +LH +    +VH DLKP NILLD+ M  ++ DFG +  L          
Sbjct: 204 SIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHL-------EPG 253
Query: 803 SSTHVFMGSIGYVPPE 818
                  G+ GY+ PE
Sbjct: 254 EKLRELCGTPGYLAPE 269

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 39/175 (22%)
Query: 687 KSFIAECETLRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK 743
           + F++E   +    H N++ L   +T C  +         ++ E++ NGSL  ++   RK
Sbjct: 75  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPV--------MIITEYMENGSLDAFL---RK 123
Query: 744 NELDIT------------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
           N+   T            S + YL    ++  VH DL   NIL++  +  KV DFG++R 
Sbjct: 124 NDGRFTVIQLVGMLRGIGSGMKYLS---DMSAVHRDLAARNILVNSNLVCKVSDFGMSRV 180
Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           L    D+  +  +T      I +  PE     + ++A DV +       + IV W
Sbjct: 181 L---EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS-------YGIVMW 225

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 39/184 (21%)
Query: 665 HENLIGSGSFGSVLHNERTGSWKSFIA----------------ECETLRNVRHRNLVKLI 708
           HE L G+G+FG V       +  +F A                E +T+  +RH  LV L 
Sbjct: 56  HEEL-GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLH 114
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EV 761
            +    +      + ++YEF+S G L + +  E  N++    A++Y+   C       E 
Sbjct: 115 DAFEDDNE-----MVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN 168
Query: 762 PVVHSDLKPGNILLDEEMTA--KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
             VH DLKP NI+   + +   K+ DFGL   L    D + S+  T    G+  +  PE 
Sbjct: 169 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL----DPKQSVKVT---TGTAEFAAPEV 221
Query: 820 GLGE 823
             G+
Sbjct: 222 AEGK 225

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 35/166 (21%)
Query: 665 HENLIGSGSFGS---VLHNERTG--------------SWKSFIAECETLRNVRHRNLVKL 707
           H  ++G G FG    V H E TG              + ++F+ E + +R + H N++K 
Sbjct: 14  HGEVLGKGCFGQAIKVTHRE-TGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKF 72
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSL--------GDWIHGERKN-ELDITSALDYLHND 758
           I        K + F+    E++  G+L          +   +R +   DI S + YLH+ 
Sbjct: 73  IGVLYK--DKRLNFIT---EYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHS- 126
Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
             + ++H DL   N L+ E     V DFGLAR +++       + S
Sbjct: 127 --MNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRS 170

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%)
Query: 667 NLIGSGSFGSVLH-------------------NERTGSWK--SFIAECETLRNVRHRNLV 705
            ++GSG+FG+V                     NE TG      F+ E   + ++ H +LV
Sbjct: 44  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 103
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYLH 756
           +L+  C S        + LV + + +G L +++H  + N          + I   + YL 
Sbjct: 104 RLLGVCLS------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE 157
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
              E  +VH DL   N+L+      K+ DFGLAR L
Sbjct: 158 ---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 190

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 39/184 (21%)
Query: 665 HENLIGSGSFGSVLHNERTGSWKSFIA----------------ECETLRNVRHRNLVKLI 708
           HE L G+G+FG V       +  +F A                E +T+  +RH  LV L 
Sbjct: 162 HEEL-GTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNL- 219
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDC-------EV 761
               + +  N   + ++YEF+S G L + +  E  N++    A++Y+   C       E 
Sbjct: 220 --HDAFEDDNE--MVMIYEFMSGGELFEKVADEH-NKMSEDEAVEYMRQVCKGLCHMHEN 274
Query: 762 PVVHSDLKPGNILLDEEMTA--KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
             VH DLKP NI+   + +   K+ DFGL   L    D + S+  T    G+  +  PE 
Sbjct: 275 NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL----DPKQSVKVT---TGTAEFAAPEV 327
Query: 820 GLGE 823
             G+
Sbjct: 328 AEGK 331

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ D GLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDRGLAR 173

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K++ +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDVVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 187

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 60  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 114
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 115 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 167
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 168 TLPYVAPE 175

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 61  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 115
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 116 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 168
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 169 TLPYVAPE 176

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 20/128 (15%)
Query: 699 VRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITS 750
           + H N+VK           N+++L L  E+ S G L D I  +        ++    + +
Sbjct: 62  LNHENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMA 116
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G
Sbjct: 117 GVVYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCG 169
Query: 811 SIGYVPPE 818
           ++ YV PE
Sbjct: 170 TLPYVAPE 177

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 13  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 64
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +   
Sbjct: 65  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCA 116
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 117 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 169

>pdb|2WTK|C Chain C, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha Complex Length = 305

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-------KN 744
           E + LR +RH+N+++L+    + + + M ++ + Y       + D +  +R         
Sbjct: 56  EIQLLRRLRHKNVIQLVDVLYNEEKQKM-YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGY 114
Query: 745 ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
              +   L+YLH+     +VH D+KPGN+LL    T K+   G+A  L     + +  +S
Sbjct: 115 FCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTS 171
Query: 805 THVFMGSIGYVPPEYGLG 822
                GS  + PPE   G
Sbjct: 172 ----QGSPAFQPPEIANG 185

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGLAR L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLARVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent Protein Kinase Ii Delta Isoform 1, Camkd Length = 301

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELDITS 750
           E    R ++H N+V+L  S S        F  LV++ ++ G L  D +  E  +E D + 
Sbjct: 53  EARICRLLKHPNIVRLHDSISE-----EGFHYLVFDLVTGGELFEDIVAREYYSEADASH 107
Query: 751 ALDYLH---NDCEVP-VVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQSSIS 803
            +  +    N C +  +VH DLKP N+LL  +      K+ DFGLA      ++ Q    
Sbjct: 108 CIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLA------IEVQGDQQ 161
Query: 804 STHVFMGSIGYVPPE 818
           +   F G+ GY+ PE
Sbjct: 162 AWFGFAGTPGYLSPE 176

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 39/175 (22%)
Query: 687 KSFIAECETLRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK 743
           + F++E   +    H N++ L   +T C  +         ++ E++ NGSL  ++   RK
Sbjct: 54  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPV--------MIITEYMENGSLDAFL---RK 102
Query: 744 NELDIT------------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
           N+   T            S + YL    ++  VH DL   NIL++  +  KV DFG++R 
Sbjct: 103 NDGRFTVIQLVGMLRGIGSGMKYLS---DMSYVHRDLAARNILVNSNLVCKVSDFGMSRV 159
Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           L    D+  +  +T      I +  PE     + ++A DV +       + IV W
Sbjct: 160 L---EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS-------YGIVMW 204

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 39/175 (22%)
Query: 687 KSFIAECETLRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK 743
           + F++E   +    H N++ L   +T C  +         ++ E++ NGSL  ++   RK
Sbjct: 60  RDFLSEASIMGQFDHPNIIHLEGVVTKCKPV--------MIITEYMENGSLDAFL---RK 108
Query: 744 NELDIT------------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
           N+   T            S + YL    ++  VH DL   NIL++  +  KV DFG++R 
Sbjct: 109 NDGRFTVIQLVGMLRGIGSGMKYLS---DMSYVHRDLAARNILVNSNLVCKVSDFGMSRV 165
Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           L    D+  +  +T      I +  PE     + ++A DV +       + IV W
Sbjct: 166 L---EDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS-------YGIVMW 210

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 75/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +   LR A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ D GLAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDGGLAR 173

>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN- Dependent Protein Kinase Ii Delta In Complex With Calmodulin Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELDITS 750
           E    R ++H N+V+L  S S        F  LV++ ++ G L  D +  E  +E D + 
Sbjct: 53  EARICRLLKHPNIVRLHDSISEEG-----FHYLVFDLVTGGELFEDIVAREYYSEADASH 107
Query: 751 ALDYL---HNDCEV-PVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQSSIS 803
            +  +    N C +  +VH DLKP N+LL  +      K+ DFGLA      ++ Q    
Sbjct: 108 CIQQILESVNHCHLNGIVHRDLKPENLLLASKSKGAAVKLADFGLA------IEVQGDQQ 161
Query: 804 STHVFMGSIGYVPPE 818
           +   F G+ GY+ PE
Sbjct: 162 AWFGFAGTPGYLSPE 176

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 71  EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 125
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 126 CLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 182
Query: 805 THVFMG 810
           T  +M 
Sbjct: 183 TPYWMA 188

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 76  EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 130
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 131 CLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 187
Query: 805 THVFMG 810
           T  +M 
Sbjct: 188 TPYWMA 193

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 39/156 (25%)
Query: 667 NLIGSGSFGSVLH-------------------NERTGSWK--SFIAECETLRNVRHRNLV 705
            ++GSG+FG+V                     NE TG      F+ E   + ++ H +LV
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 80
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYLH 756
           +L+  C S        + LV + + +G L +++H  + N          + I   + YL 
Sbjct: 81  RLLGVCLS------PTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLNWCVQIAKGMMYLE 134
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
              E  +VH DL   N+L+      K+ DFGLAR L
Sbjct: 135 ---ERRLVHRDLAARNVLVKSPNHVKITDFGLARLL 167

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 78  EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 132
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 133 CLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 189
Query: 805 THVFMG 810
           T  +M 
Sbjct: 190 TPYWMA 195

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------ 745
           E   +R+ +H N+V++  S    D      L +V EFL  G+L D +   R NE      
Sbjct: 67  EVVIMRDYQHENVVEMYNSYLVGDE-----LWVVMEFLEGGALTDIVTHTRMNEEQIAAV 121
Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
            L +  AL  LH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 122 CLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKXLVG 178
Query: 805 THVFMG 810
           T  +M 
Sbjct: 179 TPYWMA 184

>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle Protein Titin Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 37/187 (19%)
Query: 669 IGSGSFGSVLHNERTGSWKSFIA---------------ECETLRNVRHRNLVKLITSCSS 713
           +G G FG V     T S K+++A               E   L   RHRN++ L  S  S
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES 72
Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEV-------PVVHS 766
                ME L +++EF+S   + + I+     EL+    + Y+H  CE         + H 
Sbjct: 73  -----MEELVMIFEFISGLDIFERINTS-AFELNEREIVSYVHQVCEALQFLHSHNIGHF 126
Query: 767 DLKPGNILLDEEM--TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER 824
           D++P NI+       T K+ +FG AR  L+  DN        +   +  Y  PE    + 
Sbjct: 127 DIRPENIIYQTRRSSTIKIIEFGQAR-QLKPGDN------FRLLFTAPEYYAPEVHQHDV 179
Query: 825 PSTAGDV 831
            STA D+
Sbjct: 180 VSTATDM 186

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISK-LTELKMLDLMANKIT 156
           + + LQ+NKLS    +    L +LR+L ++ N LQ  LP  I K L  L+ L +  NK+ 
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 157 GRVTD--DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG 214
                  DQL NL  L++    +N L  S+PP +          L  L  L L  N L  
Sbjct: 99  ALPIGVFDQLVNLAELRL---DRNQL-KSLPPRV-------FDSLTKLTYLSLGYNELQ- 146
Query: 215 TVPSTIYN-MTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLT 273
           ++P  +++ +TSL  LRL +NQL   +P    D L  L       N+      G+  +L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Query: 274 NIQIIRMTHNLLEGT 288
            ++++++  N  + T
Sbjct: 206 KLKMLQLQENPWDCT 220

>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 520

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 24/177 (13%)
Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
            +D S N LT  +  + G+   L ++ L  N++        L  + E  ++++++  +D+
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKE------LSKIAEMTTQMKSLQQLDI 381
Query: 489 SDNSLSGNLPNSLKNC---KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSI 545
           S NS+S +      +C   KSL  L M+ N  +  I   +     ++VLDL SNK+  SI
Sbjct: 382 SQNSVSYDEKKG--DCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKI-KSI 436
Query: 546 PSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNPKLCLQLGCENPR 599
           P  +  L+AL+ LN+  N L+ V   +GIF  +++   + L  NP       C  PR
Sbjct: 437 PKQVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIWLHTNP-----WDCSCPR 486

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K+F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 187

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K+F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 187

>pdb|2X7F|A Chain A, Crystal Structure Of The Kinase Domain Of Human Traf2- And Nck-Interacting Kinase With Wee1chk1 Inhibitor Length = 326

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 42/215 (19%)
Query: 649 PKISYDE-----LRRATGNFSHENLIGSGSFGSVLHNE--RTGSWKSFIA------ECET 695
           P  S DE     LR   G F    L+G+G++G V      +TG   +         E E 
Sbjct: 7   PARSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEE 66
Query: 696 LRN--------VRHRNLVKLITSCSSLDSKNME-FLALVYEFLSNGSLGDWIHGERKNEL 746
           ++           HRN+     +    +   M+  L LV EF   GS+ D I   + N L
Sbjct: 67  IKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTL 126
Query: 747 ----------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
                     +I   L +LH      V+H D+K  N+LL E    K+ DFG++  L    
Sbjct: 127 KEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLVDFGVSAQL---- 179
Query: 797 DNQSSISSTHVFMGSIGYVPPEY-GLGERPSTAGD 830
               ++   + F+G+  ++ PE     E P    D
Sbjct: 180 --DRTVGRRNTFIGTPYWMAPEVIACDENPDATYD 212

>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of CalciumCALMODULIN ACTIVATED KINASE II Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S      +   F  LV++ ++ G L  D +  E  +E D   
Sbjct: 78  EARICRKLQHPNIVRLHDSI-----QEESFHYLVFDLVTGGELFEDIVAREFYSEADASH 132
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I  ++ Y H++    +VH +LKP N+LL  +      K+ DFGLA   +E  D++ 
Sbjct: 133 CIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLA---IEVNDSE- 185
Query: 801 SISSTHVFMGSIGYVPPE 818
              + H F G+ GY+ PE
Sbjct: 186 ---AWHGFAGTPGYLSPE 200

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 110/310 (35%), Gaps = 74/310 (23%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA-------------------ECE 694
           D L RA   +     IG G++G V       +   F+A                   E  
Sbjct: 4   DGLCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVA 63
Query: 695 TLRNVR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSNG---------SLGDWIHGER 742
            LR++    H N+V+L   C+   +     L LV+E +              G      +
Sbjct: 64  VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIK 123
Query: 743 KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
                +   LD+LH+     VVH DLKP NIL+      K+ DFGLAR        Q ++
Sbjct: 124 DMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLARIY----SFQMAL 176
Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV--------------- 847
           +S  V   ++ Y  PE  L    +T  D+ +      E    K +               
Sbjct: 177 TSVVV---TLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILD 233
Query: 848 ------ESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVG----LSCTTESP 897
                 E + P +V        RQ   S  +Q I+     +T I  +G    L C T +P
Sbjct: 234 VIGLPGEEDWPRDVALP-----RQAFHSKSAQPIEK---FVTDIDELGKDLLLKCLTFNP 285
Query: 898 GGRIGIREAL 907
             RI    AL
Sbjct: 286 AKRISAYSAL 295

>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From Par-3 Length = 396

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 25/126 (19%)
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           + SC   +S+    L  V E+++ G L    H +R+ +L          +I+ AL+YLH 
Sbjct: 118 LHSCFQTESR----LFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH- 170
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +  L   D      +T  F G+  Y+ P
Sbjct: 171 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD------TTSTFCGTPNYIAP 222
Query: 818 EYGLGE 823
           E   GE
Sbjct: 223 EILRGE 228

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K+F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 187

>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 79/191 (41%), Gaps = 44/191 (23%)
Query: 657 RRATGNFSHENLIGSGSFGSVL--HNERTGSW-------KSFI-----AECETLRNVR-- 700
           R    NF    ++G GSFG V+    + TG         K  I      EC T+   R  
Sbjct: 19  RLGIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVEC-TMTEKRIL 77
Query: 701 -----HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LD 747
                H  L +L     + D      L  V EF++ G L   I   R+ +         +
Sbjct: 78  SLARNHPFLTQLFCCFQTPDR-----LFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAE 132
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I SAL +LH+     +++ DLK  N+LLD E   K+ DFG+ +      +   +  +T  
Sbjct: 133 IISALMFLHDKG---IIYRDLKLDNVLLDHEGHCKLADFGMCK------EGICNGVTTAT 183
Query: 808 FMGSIGYVPPE 818
           F G+  Y+ PE
Sbjct: 184 FCGTPDYIAPE 194

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 46/195 (23%)
Query: 658 RATGNFSHENLIGSGSFGSVLH--NERTGSW---------------KSFIAECETLRNVR 700
           +  G +  +  +G+G FG VL   ++ TG                 + +  E + ++ + 
Sbjct: 12  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 71
Query: 701 HRNLV---KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH------GERKNEL----- 746
           H N+V   ++      L   ++  LA+  E+   G L  +++      G ++  +     
Sbjct: 72  HPNVVSAREVPDGLQKLAPNDLPLLAM--EYCEGGDLRKYLNQFENCCGLKEGPIRTLLS 129
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSIS 803
           DI+SAL YLH   E  ++H DLKP NI+L    + +  K+ D G A+ L     +Q  + 
Sbjct: 130 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-----DQGELC 181
Query: 804 STHVFMGSIGYVPPE 818
           +   F+G++ Y+ PE
Sbjct: 182 TE--FVGTLQYLAPE 194

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 669 IGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
           IG G++G V                 L  E  G   + I E   L+ ++H N+VKL    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 712 SSLDSKNMEFLALVYEFLSNG--SLGDWIHG------ERKNELDITSALDYLHNDCEVPV 763
            +      + L LV+E L      L D   G       +   L + + + Y H+     V
Sbjct: 70  HT-----KKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RV 121
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +H DLKP N+L++ E   K+ DFGLAR
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I S L++LH   +  +++ DLKP N+LLD++   ++ D GLA      V+ ++  + T  
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA------VELKAGQTKTKG 348
Query: 808 FMGSIGYVPPEYGLGE 823
           + G+ G++ PE  LGE
Sbjct: 349 YAGTPGFMAPELLLGE 364

>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I Tgf-Beta Receptor In Complex With Fkbp12 Length = 342

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 50  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 108
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 109 NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 168
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 169 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 221

>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Inhibitor Length = 326

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 37  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 95
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 96  NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 155
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 156 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 208

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 669 IGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
           IG G++G V                 L  E  G   + I E   L+ ++H N+VKL    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 712 SSLDSKNMEFLALVYEFLSNG--SLGDWIHG------ERKNELDITSALDYLHNDCEVPV 763
            +      + L LV+E L      L D   G       +   L + + + Y H+     V
Sbjct: 70  HT-----KKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RV 121
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +H DLKP N+L++ E   K+ DFGLAR
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I S L++LH   +  +++ DLKP N+LLD++   ++ D GLA      V+ ++  + T  
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA------VELKAGQTKTKG 348
Query: 808 FMGSIGYVPPEYGLGE 823
           + G+ G++ PE  LGE
Sbjct: 349 YAGTPGFMAPELLLGE 364

>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent Protein Kinase Ii Gamma Length = 336

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 25/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S S        F  LV++ ++ G L  D +  E  +E D   
Sbjct: 80  EARICRLLKHPNIVRLHDSISEEG-----FHYLVFDLVTGGELFEDIVAREYYSEADASH 134
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I  +++++H      +VH DLKP N+LL  +      K+ DFGLA      ++ Q 
Sbjct: 135 CIHQILESVNHIHQH---DIVHRDLKPENLLLASKCKGAAVKLADFGLA------IEVQG 185
Query: 801 SISSTHVFMGSIGYVPPE 818
              +   F G+ GY+ PE
Sbjct: 186 EQQAWFGFAGTPGYLSPE 203

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I S L++LH   +  +++ DLKP N+LLD++   ++ D GLA      V+ ++  + T  
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA------VELKAGQTKTKG 348
Query: 808 FMGSIGYVPPEYGLGE 823
           + G+ G++ PE  LGE
Sbjct: 349 YAGTPGFMAPELLLGE 364

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 9/76 (11%)
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           I S L++LH   +  +++ DLKP N+LLD++   ++ D GLA      V+ ++  + T  
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLA------VELKAGQTKTKG 348
Query: 808 FMGSIGYVPPEYGLGE 823
           + G+ G++ PE  LGE
Sbjct: 349 YAGTPGFMAPELLLGE 364

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 89/195 (45%), Gaps = 46/195 (23%)
Query: 658 RATGNFSHENLIGSGSFGSVLH--NERTGSW---------------KSFIAECETLRNVR 700
           +  G +  +  +G+G FG VL   ++ TG                 + +  E + ++ + 
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLN 70
Query: 701 HRNLV---KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH------GERKNEL----- 746
           H N+V   ++      L   ++  LA+  E+   G L  +++      G ++  +     
Sbjct: 71  HPNVVSAREVPDGLQKLAPNDLPLLAM--EYCEGGDLRKYLNQFENCCGLKEGPIRTLLS 128
Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSIS 803
           DI+SAL YLH   E  ++H DLKP NI+L    + +  K+ D G A+ L     +Q  + 
Sbjct: 129 DISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-----DQGELC 180
Query: 804 STHVFMGSIGYVPPE 818
           +   F+G++ Y+ PE
Sbjct: 181 TE--FVGTLQYLAPE 193

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 669 IGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
           IG G++G V                 L  E  G   + I E   L+ ++H N+VKL    
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVI 69
Query: 712 SSLDSKNMEFLALVYEFLSNG--SLGDWIHG------ERKNELDITSALDYLHNDCEVPV 763
            +      + L LV+E L      L D   G       +   L + + + Y H+     V
Sbjct: 70  HT-----KKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RV 121
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +H DLKP N+L++ E   K+ DFGLAR
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLAR 148

>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical Protein Kinase C-Iota Length = 364

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 25/126 (19%)
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           + SC   +S+    L  V E+++ G L    H +R+ +L          +I+ AL+YLH 
Sbjct: 86  LHSCFQTESR----LFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH- 138
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +  L   D      +T  F G+  Y+ P
Sbjct: 139 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD------TTSXFCGTPNYIAP 190
Query: 818 EYGLGE 823
           E   GE
Sbjct: 191 EILRGE 196

>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain Kinase Loc340156. Length = 373

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 29/151 (19%)
Query: 664 SHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVK-------------LITS 710
           S   ++G G FG V   E T +     A+    R ++ +  VK             LI  
Sbjct: 92  SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQL 151
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-------ITSALDYLHNDCEV 761
             + +SKN   + LV E++  G L D I  E  N  ELD       I   + ++H   ++
Sbjct: 152 YDAFESKND--IVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMH---QM 206
Query: 762 PVVHSDLKPGNILL--DEEMTAKVGDFGLAR 790
            ++H DLKP NIL    +    K+ DFGLAR
Sbjct: 207 YILHLDLKPENILCVNRDAKQIKIIDFGLAR 237

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS-GPIPNIVAELKGLEVLDLSS 538
           L N++ +D+S                SLE L MA N F    +P+I  EL+ L  LDLS 
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 539 NKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVH---LKGNPKLC 590
            +L    P+   +L +L+ LN+  N L+ V   +GIF  ++++    L  NP  C
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHTNPWDC 532

>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5- Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 48/192 (25%)
Query: 669 IGSGSFGSVL--HNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ T                 + ++ E + L +  H N+VKL+ +  
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 713 SLDSKNMEFLALVYEFLSNGSLGD-WIHGER-----------KNELDITSALDYLHNDCE 760
             ++     L ++ EF + G++    +  ER           K  LD   AL+YLH++  
Sbjct: 105 YENN-----LWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD---ALNYLHDN-- 154
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H DLK GNIL   +   K+ DFG++        N  +I     F+G+  ++ PE  
Sbjct: 155 -KIIHRDLKAGNILFTLDGDIKLADFGVS------AKNTRTIQRRDSFIGTPYWMAPEVV 207
Query: 821 LGERPSTAGDVP 832
           + E   T+ D P
Sbjct: 208 MCE---TSKDRP 216

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 74
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 75  DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 126
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL +   +  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 180
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 181 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 212

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 34  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 91
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 92  DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 143
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL +   +  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 144 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 197
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 198 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 229

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 28/168 (16%)
Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----RK 743
            F+ E   L+   H N+V+LI  C+       + + +V E +  G    ++  E    R 
Sbjct: 158 KFLQEARILKQYSHPNIVRLIGVCT-----QKQPIYIVMELVQGGDFLTFLRTEGARLRV 212
Query: 744 NEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
             L     D  + ++YL + C    +H DL   N L+ E+   K+ DFG++R   E  D 
Sbjct: 213 KTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR---EEADG 266
Query: 799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
             + S      G +  VP ++   E  +      +SES    F I+ W
Sbjct: 267 VXAAS------GGLRQVPVKWTAPEALNYGRY--SSESDVWSFGILLW 306

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 35/185 (18%)
Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
           +  L N++ L L  N+L     S +  +T+L +L L  NQL   +P  V D L NL + +
Sbjct: 59  IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELV 115
Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDD 315
              N+      G    LTN+  + + HN L+ +LP G+            F+K+      
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ-SLPKGV------------FDKL------ 156
Query: 316 EGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR 375
                       T+L  L LD NQ +  +PE + +   +L +L L  N +         R
Sbjct: 157 ------------TNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDR 203
Query: 376 LRSLT 380
           L SLT
Sbjct: 204 LTSLT 208

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 25  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 84
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 85  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 144
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 145 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 191

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 187

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 22  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 81
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 82  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 141
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 142 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 188

>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 25/126 (19%)
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           + SC   +S+    L  V E+++ G L    H +R+ +L          +I+ AL+YLH 
Sbjct: 71  LHSCFQTESR----LFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH- 123
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +  L   D      +T  F G+  Y+ P
Sbjct: 124 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD------TTSXFCGTPNYIAP 175
Query: 818 EYGLGE 823
           E   GE
Sbjct: 176 EILRGE 181

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 187

>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase ( Diphosphorylated Form) Bound To 5- Amino-3-((4-( Aminosulfonyl)phenyl)amino)-N-(2,6- Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 48/192 (25%)
Query: 669 IGSGSFGSVL--HNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ T                 + ++ E + L +  H N+VKL+ +  
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 713 SLDSKNMEFLALVYEFLSNGSLGD-WIHGER-----------KNELDITSALDYLHNDCE 760
             ++     L ++ EF + G++    +  ER           K  LD   AL+YLH++  
Sbjct: 105 YENN-----LWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD---ALNYLHDN-- 154
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H DLK GNIL   +   K+ DFG++        N   I     F+G+  ++ PE  
Sbjct: 155 -KIIHRDLKAGNILFTLDGDIKLADFGVS------AKNTRXIQRRDXFIGTPYWMAPEVV 207
Query: 821 LGERPSTAGDVP 832
           + E   T+ D P
Sbjct: 208 MCE---TSKDRP 216

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 29  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 88
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 89  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 148
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 149 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 195

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 92
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 93  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 152
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 153 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 199

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 40  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 99
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 100 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 159
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 160 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 206

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 92
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 93  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 152
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 153 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 199

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 28/168 (16%)
Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----RK 743
            F+ E   L+   H N+V+LI  C+       + + +V E +  G    ++  E    R 
Sbjct: 158 KFLQEARILKQYSHPNIVRLIGVCT-----QKQPIYIVMELVQGGDFLTFLRTEGARLRV 212
Query: 744 NEL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
             L     D  + ++YL + C    +H DL   N L+ E+   K+ DFG++R   E  D 
Sbjct: 213 KTLLQMVGDAAAGMEYLESKC---CIHRDLAARNCLVTEKNVLKISDFGMSR---EEADG 266
Query: 799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
             + S      G +  VP ++   E  +      +SES    F I+ W
Sbjct: 267 VYAAS------GGLRQVPVKWTAPEALNYGRY--SSESDVWSFGILLW 306

>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain Length = 345

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 25/126 (19%)
Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
           + SC   +S+    L  V E+++ G L    H +R+ +L          +I+ AL+YLH 
Sbjct: 75  LHSCFQTESR----LFFVIEYVNGGDL--MFHMQRQRKLPEEHARFYSAEISLALNYLH- 127
Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +  L   D      +T  F G+  Y+ P
Sbjct: 128 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD------TTSXFCGTPNYIAP 179
Query: 818 EYGLGE 823
           E   GE
Sbjct: 180 EILRGE 185

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 44  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 101
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 102 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 153
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 154 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 207
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 208 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 239

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 721 FLALVYEFLSNGSLGDWIHG-----ERKNE------LDITSALDYLHNDCEVPVVHSDLK 769
           +L +  +     +L DW++G     ER+        L I  A+++LH+     ++H DLK
Sbjct: 89  YLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLK 145
Query: 770 PGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF---MGSIG---YVPPEYGLGE 823
           P NI    +   KVGDFGL   + +  + Q+ ++    +    G +G   Y+ PE   G 
Sbjct: 146 PSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGN 205
Query: 824 RPSTAGDV 831
             S   D+
Sbjct: 206 SYSHKVDI 213

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 80
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 81  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 140
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 141 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 187

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGFVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 63/262 (24%)
Query: 668 LIGSGSFGSVLH------------------NERTGSWKSFIAECETLRNVRHRNLVKLIT 709
           ++G GSFG VL                   + +     + + E E L+ + H N++KL  
Sbjct: 29  MLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFE 88
Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGD-WIHGERKNELD-------ITSALDYLHNDCEV 761
                 S       +V E  + G L D  I  +R +E D       + S + Y+H     
Sbjct: 89  ILEDSSS-----FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH--- 140
Query: 762 PVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            +VH DLKP NILL   +++   K+ DFGL+    +    +  I + +       Y+ PE
Sbjct: 141 NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY-------YIAPE 193
Query: 819 YGLGERPS-----TAGDV-----PTSESFAG--EFNIVKWVES-----NLPENVLQVLDP 861
              G         +AG +       +  F G  E++I+K VE+     +LP+      D 
Sbjct: 194 VLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 862 E--LRQLMTSNESQTIQLHDCL 881
           +  +R+++T + S  I    CL
Sbjct: 254 KDLIRKMLTFHPSLRITATQCL 275

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/262 (24%), Positives = 108/262 (41%), Gaps = 63/262 (24%)
Query: 668 LIGSGSFGSVLH------------------NERTGSWKSFIAECETLRNVRHRNLVKLIT 709
           ++G GSFG VL                   + +     + + E E L+ + H N++KL  
Sbjct: 29  MLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFE 88
Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGD-WIHGERKNELD-------ITSALDYLHNDCEV 761
                 S       +V E  + G L D  I  +R +E D       + S + Y+H     
Sbjct: 89  ILEDSSS-----FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH--- 140
Query: 762 PVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            +VH DLKP NILL   +++   K+ DFGL+    +    +  I + +       Y+ PE
Sbjct: 141 NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAY-------YIAPE 193
Query: 819 YGLGERPS-----TAGDV-----PTSESFAG--EFNIVKWVES-----NLPENVLQVLDP 861
              G         +AG +       +  F G  E++I+K VE+     +LP+      D 
Sbjct: 194 VLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDA 253
Query: 862 E--LRQLMTSNESQTIQLHDCL 881
           +  +R+++T + S  I    CL
Sbjct: 254 KDLIRKMLTFHPSLRITATQCL 275

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
            + YLHN+    V+H DLK GN+ L+++M  K+GDFGLA
Sbjct: 138 GVQYLHNN---RVIHRDLKLGNLFLNDDMDVKIGDFGLA 173

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 114
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 115 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 175 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSXICSRY 221

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSAL 752
           H N+VK           N+++L L  E+ S G L D I  +        ++    + + +
Sbjct: 63  HENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGV 117
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G++
Sbjct: 118 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCGTL 170
Query: 813 GYVPPE 818
            YV PE
Sbjct: 171 PYVAPE 176

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 52/173 (30%)
Query: 662 NFSHENLIGSGSFGSVLHN-------------ERTGSWKS------FIAECETLRNV-RH 701
           +   +++IG G+FG VL               +R   + S      F  E E L  +  H
Sbjct: 26  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 85
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------- 745
            N++ L+ +C     ++  +L L  E+  +G+L D++   R  E                
Sbjct: 86  PNIINLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 140
Query: 746 --------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    D+   +DYL    +   +H DL   NIL+ E   AK+ DFGL+R
Sbjct: 141 SQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 190

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 52/173 (30%)
Query: 662 NFSHENLIGSGSFGSVLHN-------------ERTGSWKS------FIAECETLRNV-RH 701
           +   +++IG G+FG VL               +R   + S      F  E E L  +  H
Sbjct: 16  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 75
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------- 745
            N++ L+ +C     ++  +L L  E+  +G+L D++   R  E                
Sbjct: 76  PNIINLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 130
Query: 746 --------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    D+   +DYL    +   +H DL   NIL+ E   AK+ DFGL+R
Sbjct: 131 SQQLLHFAADVARGMDYL---SQKQFIHRDLAARNILVGENYVAKIADFGLSR 180

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 91/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSAL 752
           H N+VK           N+++L L  E+ S G L D I  +        ++    + + +
Sbjct: 64  HENVVKFY---GHRREGNIQYLFL--EYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGV 118
Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YLH    + + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G++
Sbjct: 119 VYLHG---IGITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCGTL 171
Query: 813 GYVPPE 818
            YV PE
Sbjct: 172 PYVAPE 177

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 34/168 (20%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA-------------------ECE 694
           D L RA   +     IG G++G V       +   F+A                   E  
Sbjct: 4   DGLCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVA 63
Query: 695 TLRNVR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSNG---------SLGDWIHGER 742
            LR++    H N+V+L   C+   +     L LV+E +              G      +
Sbjct: 64  VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIK 123
Query: 743 KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                +   LD+LH+     VVH DLKP NIL+      K+ DFGLAR
Sbjct: 124 DMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 64/168 (38%), Gaps = 34/168 (20%)
Query: 654 DELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA-------------------ECE 694
           D L RA   +     IG G++G V       +   F+A                   E  
Sbjct: 4   DGLCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVA 63
Query: 695 TLRNVR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSNG---------SLGDWIHGER 742
            LR++    H N+V+L   C+   +     L LV+E +              G      +
Sbjct: 64  VLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIK 123
Query: 743 KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                +   LD+LH+     VVH DLKP NIL+      K+ DFGLAR
Sbjct: 124 DMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFGLAR 168

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 34  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 93
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 94  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 153
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 154 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 200

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 26  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 85
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 86  FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 145
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 146 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 192

>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded Form) Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 48/192 (25%)
Query: 669 IGSGSFGSVL--HNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ T                 + ++ E + L +  H N+VKL+ +  
Sbjct: 45  LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 713 SLDSKNMEFLALVYEFLSNGSLGD-WIHGER-----------KNELDITSALDYLHNDCE 760
             ++     L ++ EF + G++    +  ER           K  LD   AL+YLH++  
Sbjct: 105 YENN-----LWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLD---ALNYLHDN-- 154
Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H DLK GNIL   +   K+ DFG++        N   I     F+G+  ++ PE  
Sbjct: 155 -KIIHRDLKAGNILFTLDGDIKLADFGVS------AKNTRXIQRRDSFIGTPYWMAPEVV 207
Query: 821 LGERPSTAGDVP 832
           + E   T+ D P
Sbjct: 208 MCE---TSKDRP 216

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 57  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 116
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 117 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 176
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 177 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 223

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 100 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 159
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 160 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 219
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 220 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 266

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 59  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 118
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 119 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 178
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 179 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 225

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E++ NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEYMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLGRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 23/173 (13%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           VW +  R +  + VG  A   VC    +YD   R     + + L  S  F S++H  RT 
Sbjct: 23  VWEVPQRLQGLRPVGSGAYGSVCS---AYDA--RLRQKVAVKKL--SRPFQSLIHARRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFL--ALVYEFLSNGSLGDWIH 739
                  E   L++++H N++ L+   T  +S++  +  +L   L+   L+N      + 
Sbjct: 75  -----YRELRLLKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKSQALS 129
Query: 740 GERKNEL--DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            E    L   +   L Y+H+     ++H DLKP N+ ++E+   ++ DFGLAR
Sbjct: 130 DEHVQFLVYQLLRGLKYIHS---AGIIHRDLKPSNVAVNEDSELRILDFGLAR 179

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 114
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 115 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 174
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 175 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 221

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 74/176 (42%), Gaps = 29/176 (16%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           +W +  R +    VG  A   VC    +    R A    S         F S++H +RT 
Sbjct: 17  IWEVPERYQNLSPVGSGAYGSVCAAFDTKTGHRVAVKKLSR-------PFQSIIHAKRT- 68
Query: 685 SWKSFIAECETLRNVRHRNLVKLI---TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE 741
                  E   L++++H N++ L+   T   SL+  N  +L      L    L + +  +
Sbjct: 69  -----YRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLV---THLMGADLNNIVKCQ 120
Query: 742 RKNE-------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +  +         I   L Y+H+     ++H DLKP N+ ++E+   K+ DF LAR
Sbjct: 121 KLTDDHVQFLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFYLAR 173

>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue Length = 348

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           + ++  Y+HN  E  + H D+KP NIL+D+    K+ DFG + +++++    S       
Sbjct: 160 VLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSR------ 211
Query: 808 FMGSIGYVPPEYGLGERPSTAGDV 831
             G+  ++PPE+   E       V
Sbjct: 212 --GTYEFMPPEFFSNESSYNGAKV 233

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 28/170 (16%)
Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFI-AECETLRNVRHRNLVKL-I 708
           +++   +IG+GSFG V   +   S            K F   E + +R + H N+V+L  
Sbjct: 49  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRY 108
Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSALDYLHN 757
              SS + K+  +L LV +++         H  R  +             +  +L Y+H+
Sbjct: 109 FFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHS 168
Query: 758 DCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISSTH 806
                + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +
Sbjct: 169 ---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY 215

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 26/138 (18%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD--- 747
           E   L+++ H N++KL          + ++  LV EF   G L + I    K +E D   
Sbjct: 96  EISLLKSLDHPNIIKLFDVFE-----DKKYFYLVTEFYEGGELFEQIINRHKFDECDAAN 150
Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLARFLLERVDNQS 800
               I S + YLH      +VH D+KP NILL+ +   +  K+ DFGL+ F        S
Sbjct: 151 IMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLNIKIVDFGLSSFF-------S 200
Query: 801 SISSTHVFMGSIGYVPPE 818
                   +G+  Y+ PE
Sbjct: 201 KDYKLRDRLGTAYYIAPE 218

>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp Site Inhibitor Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 12  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 70
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 71  NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 130
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 131 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 183

>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human Tgf- Beta Type I Receptor Length = 303

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 11  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 69
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 70  NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 129
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 130 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 182

>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542 Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 17  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 75
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 76  NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 135
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 136 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 188

>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3- Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 669 IGSGSFGSVLHNERTGSW-----------KSFIAECETLRNV--RHRNLVKLITSCSSLD 715
           IG G FG V   +  G             +S+  E E  + V  RH N++  I +  + D
Sbjct: 14  IGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAA-DNKD 72
Query: 716 SKNMEFLALVYEFLSNGSLGDW-------IHGERKNELDITSALDYLHNDC-----EVPV 763
           +     L LV ++  +GSL D+       + G  K  L   S L +LH +      +  +
Sbjct: 73  NGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAI 132
Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ PE
Sbjct: 133 AHRDLKSKNILVKKNGTCCIADLGLA-VRHDSATDTIDIAPNHR-VGTKRYMAPE 185

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 67/195 (34%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           VW +  R +  + VG  A   VC    +YD   R     + + L  S  F S++H  RT 
Sbjct: 23  VWEVPQRLQGLRPVGSGAYGSVCS---AYDA--RLRQKVAVKKL--SRPFQSLIHARRT- 74
Query: 685 SWKSFIAECETLRNVRHRNLVKL-----------------------------ITSCSSLD 715
                  E   L++++H N++ L                             I  C +L 
Sbjct: 75  -----YRELRLLKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALS 129
Query: 716 SKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILL 775
            ++++FL  VY+ L                      L Y+H+     ++H DLKP N+ +
Sbjct: 130 DEHVQFL--VYQLLR--------------------GLKYIHS---AGIIHRDLKPSNVAV 164
Query: 776 DEEMTAKVGDFGLAR 790
           +E+   ++ DFGLAR
Sbjct: 165 NEDSELRILDFGLAR 179

>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 72/151 (47%), Gaps = 14/151 (9%)
Query: 416 GIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE 475
           G+P+ +  +  L ++ L+ N       I+  +F SL  +      I GN+ K  L     
Sbjct: 291 GLPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDL-----YIKGNMRKLDLGT--R 343
Query: 476 EISRLENVVTIDLSDNSLSG----NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL 531
            + +LEN+  +DLS + +      NL   LKN + L+ L ++YN+  G       E   L
Sbjct: 344 CLEKLENLQKLDLSHSDIEASDCCNL--QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQL 401
Query: 532 EVLDLSSNKLSGSIP-SDLQNLQALRSLNLT 561
           E+LD++   L    P S  QNL  LR LNL+
Sbjct: 402 ELLDVAFTHLHVKAPHSPFQNLHLLRVLNLS 432

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 67/195 (34%)
Query: 625 VWPIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG 684
           VW +  R +  + VG  A   VC    +YD   R     + + L  S  F S++H  RT 
Sbjct: 15  VWEVPQRLQGLRPVGSGAYGSVCS---AYDA--RLRQKVAVKKL--SRPFQSLIHARRT- 66
Query: 685 SWKSFIAECETLRNVRHRNLVKL-----------------------------ITSCSSLD 715
                  E   L++++H N++ L                             I  C +L 
Sbjct: 67  -----YRELRLLKHLKHENVIGLLDVFTPATSIEDFSEVYLVTTLMGADLNNIVKCQALS 121
Query: 716 SKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILL 775
            ++++FL  VY+ L                      L Y+H+     ++H DLKP N+ +
Sbjct: 122 DEHVQFL--VYQLLR--------------------GLKYIHS---AGIIHRDLKPSNVAV 156
Query: 776 DEEMTAKVGDFGLAR 790
           +E+   ++ DFGLAR
Sbjct: 157 NEDCELRILDFGLAR 171

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 16/104 (15%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L ++ E+L  GS  D +     +E  I +        LDYLH++ ++   H D+K  N+L
Sbjct: 96  LWIIMEYLGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKI---HRDIKAANVL 152
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L E+   K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 153 LSEQGDVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 190

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 29/174 (16%)
Query: 662 NFSHENL---IGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVK-LITSCSSLDSK 717
           NF H  +   IG GSFG V   ++  + K +  +    +    RN V+ +      +   
Sbjct: 13  NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGL 72
Query: 718 NMEFLA-LVYEFLSNGSL---------GDWIHGERKNE-----------LDITSALDYLH 756
              FL  L Y F     +         GD  +  ++N             ++  ALDYL 
Sbjct: 73  EHPFLVNLWYSFQDEEDMFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQ 132
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           N     ++H D+KP NILLDE     + DF +A  +L R    ++++ T  +M 
Sbjct: 133 NQ---RIIHRDMKPDNILLDEHGHVHITDFNIAA-MLPRETQITTMAGTKPYMA 182

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS- 750
           E   +R+ +H N+V++  S         E L ++ EFL  G+L D +   R NE  I + 
Sbjct: 92  EVVIMRDYQHFNVVEMYKSYLV-----GEELWVLMEFLQGGALTDIVSQVRLNEEQIATV 146
Query: 751 ------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
                 AL YLH      V+H D+K  +ILL  +   K+ DFG    + + V  +  +  
Sbjct: 147 CEAVLQALAYLHAQG---VIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKXLVG 203
Query: 805 THVFMG 810
           T  +M 
Sbjct: 204 TPYWMA 209

>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Novel Bosutinib Isoform 1, Previously Thought To Be Bosutinib Length = 293

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 44/190 (23%)
Query: 669 IGSGSFGSVLH--NERTGSW--------------KSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ TG+               + +I E E L    H  +VKL+ +  
Sbjct: 19  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 78
Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVP 762
             D K    L ++ EF   G++ D I  E    L           +  AL++LH+     
Sbjct: 79  H-DGK----LWIMIEFCPGGAV-DAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---R 129
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           ++H DLK GN+L+  E   ++ DFG++        N  ++     F+G+  ++ PE  + 
Sbjct: 130 IIHRDLKAGNVLMTLEGDIRLADFGVS------AKNLKTLQKRDSFIGTPYWMAPEVVMC 183
Query: 823 ERPSTAGDVP 832
           E   T  D P
Sbjct: 184 E---TMKDTP 190

>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10 Bound To Su11274 Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 50/190 (26%), Positives = 82/190 (43%), Gaps = 44/190 (23%)
Query: 669 IGSGSFGSVLH--NERTGSW--------------KSFIAECETLRNVRHRNLVKLITSCS 712
           +G G+FG V    N+ TG+               + +I E E L    H  +VKL+ +  
Sbjct: 27  LGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYY 86
Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEVP 762
             D K    L ++ EF   G++ D I  E    L           +  AL++LH+     
Sbjct: 87  H-DGK----LWIMIEFCPGGAV-DAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---R 137
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           ++H DLK GN+L+  E   ++ DFG++        N  ++     F+G+  ++ PE  + 
Sbjct: 138 IIHRDLKAGNVLMTLEGDIRLADFGVS------AKNLKTLQKRDSFIGTPYWMAPEVVMC 191
Query: 823 ERPSTAGDVP 832
           E   T  D P
Sbjct: 192 E---TMKDTP 198

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 74/180 (41%), Gaps = 44/180 (24%)
Query: 668 LIGSGSFGSVLH------------------NERTGSWKSFIAECETLRNVRHRNLVKLIT 709
           ++G GSFG VL                   + +     + + E E L+ + H N++KL  
Sbjct: 29  MLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFE 88
Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNELD-------ITSALDYLHNDCEV 761
                 S       +V E  + G L D I   +R +E D       + S + Y+H     
Sbjct: 89  ILEDSSS-----FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH--- 140
Query: 762 PVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            +VH DLKP NILL   +++   K+ DFGL+    +    +  I       G+  Y+ PE
Sbjct: 141 NIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRI-------GTAYYIAPE 193

>pdb|3FPQ|A Chain A, Crystal Structure Of The Kinase Domain Of Wnk1 Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 29/148 (19%)
Query: 669 IGSGSFGSV---LHNERTG--SW-------------KSFIAECETLRNVRHRNLVKLITS 710
           IG GSF +V   L  E T   +W             + F  E E L+ ++H N+V+   S
Sbjct: 34  IGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEXLKGLQHPNIVRFYDS 93
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYLHNDCEVP 762
             S   K  + + LV E  ++G+L  ++   +  ++         I   L +LH     P
Sbjct: 94  WES-TVKGKKCIVLVTELXTSGTLKTYLKRFKVXKIKVLRSWCRQILKGLQFLHTRTP-P 151
Query: 763 VVHSDLKPGNILLDEEM-TAKVGDFGLA 789
           ++H DLK  NI +     + K+GD GLA
Sbjct: 152 IIHRDLKCDNIFITGPTGSVKIGDLGLA 179

>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 562

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 25/169 (14%)
Query: 89  PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI--SKLTELK 146
           P   + +FL   Q   N  + ++ +    L RL+ L +  N L+    V +    ++ L+
Sbjct: 350 PSPSSFTFLNFTQ---NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406
Query: 147 MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSI----PPSIANLIPSDLSRLENL 202
            LD+  N +     D       S+ VLN   N+L GS+    PP +              
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV-------------- 452
Query: 203 KVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           KVLDL  NR+  ++P  + ++ +L  L +ASNQL   +P  V D L +L
Sbjct: 453 KVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSL 499

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 34/148 (22%)
Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG G++G+V                  L ++  G   S + E   L+ ++H+N+V+L   
Sbjct: 10  IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDV 69
Query: 711 CSSLDSKNMEFLALVYEFLSNG--SLGDWIHGERKNEL------DITSALDYLHNDCEVP 762
             S D K    L LV+EF         D  +G+   E+       +   L + H+     
Sbjct: 70  LHS-DKK----LTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---N 121
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           V+H DLKP N+L++     K+ DFGLAR
Sbjct: 122 VLHRDLKPQNLLINRNGELKLADFGLAR 149

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 39/165 (23%)
Query: 662 NFSHENLIGSGSFGSVLH---NERTGSW------------------KSFIAECETLRNVR 700
            F+   ++G G FGSV      +  GS+                  + F+ E   ++   
Sbjct: 24  QFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFD 83
Query: 701 HRNLVKLI-TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------------- 745
           H ++ KL+  S  S     +    ++  F+ +G L  ++   R  E              
Sbjct: 84  HPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFM 143
Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +DI   ++YL +      +H DL   N +L E+MT  V DFGL+R
Sbjct: 144 VDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSDLKPGNIL 774
           L LV E+L +G L D++   R   LD +  L Y    C+          VH DL   NIL
Sbjct: 88  LRLVMEYLPSGCLRDFLQRHRAR-LDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL 146
Query: 775 LDEEMTAKVGDFGLARFL 792
           ++ E   K+ DFGLA+ L
Sbjct: 147 VESEAHVKIADFGLAKLL 164

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSDLKPGNIL 774
           L LV E+L +G L D++   R   LD +  L Y    C+          VH DL   NIL
Sbjct: 85  LRLVMEYLPSGCLRDFLQRHRA-RLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL 143
Query: 775 LDEEMTAKVGDFGLARFL 792
           ++ E   K+ DFGLA+ L
Sbjct: 144 VESEAHVKIADFGLAKLL 161

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 45/186 (24%)
Query: 663 FSHENLIGSGSFGSVL--HNERTGSW-----------------KSFIAECETLRNVRHRN 703
           +  + ++G GSFG V+   ++ TG                   +S + E + L+ + H N
Sbjct: 34  YKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN 93
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYL 755
           ++KL       + K   +  LV E  + G L D I   ++ +E+D       + S + Y+
Sbjct: 94  IMKLY---EFFEDKG--YFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYM 148
Query: 756 HNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           H +    +VH DLKP N+LL+   ++   ++ DFGL+         +  I + +      
Sbjct: 149 HKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAY------ 199
Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 200 -YIAPE 204

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 119/269 (44%), Gaps = 41/269 (15%)
Query: 91  IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
           + NL+ L  ++L +N +S      +  L  L+ LN S N +    P  ++ LT L+ LD+
Sbjct: 125 LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDI 180
Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
            +NK++      +L NL SL   N             I+++ P  L  L NL  L L  N
Sbjct: 181 SSNKVSDISVLAKLTNLESLIATN-----------NQISDITP--LGILTNLDELSLNGN 227
Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLH 270
           +L      T+ ++T+L  L LA+NQ+    P      L  L +     N+ +   P  L 
Sbjct: 228 QLKDI--GTLASLTNLTDLDLANNQISNLAPL---SGLTKLTELKLGANQISNISP--LA 280
Query: 271 NLTNIQIIRMTHNLLEGTLP-PGLGNLPFLRTYNIGFNKI-----VSSGD--------DE 316
            LT +  + +  N LE   P   L NL +L  Y   FN I     VSS          + 
Sbjct: 281 GLTALTNLELNENQLEDISPISNLKNLTYLTLY---FNNISDISPVSSLTKLQRLFFYNN 337
Query: 317 GLSFITSLTNSTHLNYLALDGNQFEGKIP 345
            +S ++SL N T++N+L+   NQ     P
Sbjct: 338 KVSDVSSLANLTNINWLSAGHNQISDLTP 366

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 67/165 (40%), Gaps = 53/165 (32%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62
Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------- 750
           +VKL+     + ++N   L LV+E          +H + K  +D ++             
Sbjct: 63  IVKLL---DVIHTENK--LYLVFEH---------VHQDLKTFMDASALTGIPLPLIKSYL 108
Query: 751 -----ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 L + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 109 FQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 150

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSDLKPGNIL 774
           L LV E+L +G L D++   R   LD +  L Y    C+          VH DL   NIL
Sbjct: 101 LRLVMEYLPSGCLRDFLQRHRAR-LDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL 159
Query: 775 LDEEMTAKVGDFGLARFL 792
           ++ E   K+ DFGLA+ L
Sbjct: 160 VESEAHVKIADFGLAKLL 177

>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin E804 Length = 313

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 19/135 (14%)
Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL-GDWIHGERKNELD--- 747
           E    R ++H N+V+L  S S           L+++ ++ G L  D +  E  +E D   
Sbjct: 71  EARICRLLKHPNIVRLHDSISEEGHHY-----LIFDLVTGGELFEDIVAREYYSEADASH 125
Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---TAKVGDFGLARFLLERVDNQSSIS 803
            I   L+ + +  ++ VVH DLKP N+LL  ++     K+ DFGLA      ++ +    
Sbjct: 126 CIQQILEAVLHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLA------IEVEGEQQ 179
Query: 804 STHVFMGSIGYVPPE 818
           +   F G+ GY+ PE
Sbjct: 180 AWFGFAGTPGYLSPE 194

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCE-------VPVVHSDLKPGNIL 774
           L LV E+L +G L D++   R   LD +  L Y    C+          VH DL   NIL
Sbjct: 89  LRLVMEYLPSGCLRDFLQRHRAR-LDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL 147
Query: 775 LDEEMTAKVGDFGLARFL 792
           ++ E   K+ DFGLA+ L
Sbjct: 148 VESEAHVKIADFGLAKLL 165

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 74
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E + NGSL  ++   RK++   T          
Sbjct: 75  DHPNIIRL----EGVVTKSKPVM-IVTEXMENGSLDSFL---RKHDAQFTVIQLVGMLRG 126
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL +   +  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 127 IASGMKYLSD---MGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 180
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 181 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 212

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 35/177 (19%)
Query: 663 FSHENLIGSGSFGSV-LHNERTGSWKSFI----------------AECETLRNVRHRNLV 705
           F  +  +GSG+FG V L  ER+   +  I                AE E L+++ H N++
Sbjct: 24  FIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNII 83
Query: 706 KLITSCSSLDSKNMEFL-------ALVYEFLSNGSLGDWIHGERKNEL--DITSALDYLH 756
           K+       D  NM  +        L+   +S  + G  +      EL   + +AL Y H
Sbjct: 84  KIFEVFE--DYHNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFH 141
Query: 757 NDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           +     VVH DLKP NIL  +       K+ DFGLA  L +  ++ ++ + T ++M 
Sbjct: 142 SQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAE-LFKSDEHSTNAAGTALYMA 194

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 53/213 (24%)
Query: 666 ENLIGSGSFGSV----------------LHNERTG----SWKSFIAECETLRNVRHRNLV 705
           E +IG+G FG V                +   + G      + F+ E   +    H N++
Sbjct: 27  ERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNII 86
Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALD 753
            L      + +K+   + +V E++ NGSL  ++   +KN+              I++ + 
Sbjct: 87  HL----EGVVTKSKPVM-IVTEYMENGSLDTFL---KKNDGQFTVIQLVGMLRGISAGMK 138
Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T      I 
Sbjct: 139 YLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRGGKIPIR 192
Query: 814 YVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           +  PE     + ++A DV +       + IV W
Sbjct: 193 WTAPEAIAFRKFTSASDVWS-------YGIVMW 218

>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone Morp Protein Receptor Type-1b (Bmpr1b) In Complex With Fkbp12 An 193189 Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 76/179 (42%), Gaps = 36/179 (20%)
Query: 669 IGSGSFGSVLHNERTGSWK---------------SFIAECETLRNV--RHRNLVKLITSC 711
           IG G +G V      G W+               S+  E E  + V  RH N++  I + 
Sbjct: 45  IGKGRYGEVW----MGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAA- 99
Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHG---ERKNELDIT----SALDYLHNDC----- 759
               + +   L L+ ++  NGSL D++     + K+ L +     S L +LH +      
Sbjct: 100 DIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQG 159
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +  + H DLK  NIL+ +  T  + D GLA   +   +      +T V  G+  Y+PPE
Sbjct: 160 KPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRV--GTKRYMPPE 216

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 31/154 (20%)
Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 7   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 66
Query: 704 LVKLITSCSSLDSKNMEFLALVY------EFLSNGSL-GDWIHGERKNELDITSALDYLH 756
           +VKL+     + ++N  +L   +      +F+   +L G  +   +     +   L + H
Sbjct: 67  IVKLL---DVIHTENKLYLVFEHVDQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 123
Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 124 SH---RVLHRDLKPQNLLINTEGAIKLADFGLAR 154

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 40/193 (20%)
Query: 648 HPKISYDELRRATGNFSHENLIGSGSFGSVL-----HNERTGSWKSFIAECETLRNVRHR 702
           H ++  +EL      F+  + IG GSFG V      H +   + K    E         +
Sbjct: 12  HSRVDPEEL------FTKLDRIGKGSFGEVYKGIDNHTKEVVAIKIIDLEEAEDEIEDIQ 65
Query: 703 NLVKLITSCSS----------LDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------ 746
             + +++ C S          L S     L ++ E+L  GS  D +      E       
Sbjct: 66  QEITVLSQCDSPYITRYFGSYLKSTK---LWIIMEYLGGGSALDLLKPGPLEETYIATIL 122
Query: 747 -DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
            +I   LDYLH++ ++   H D+K  N+LL E+   K+ DFG+A  L    D Q      
Sbjct: 123 REILKGLDYLHSERKI---HRDIKAANVLLSEQGDVKLADFGVAGQL---TDTQ---IKR 173
Query: 806 HVFMGSIGYVPPE 818
           + F+G+  ++ PE
Sbjct: 174 NXFVGTPFWMAPE 186

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E + NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEXMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGAVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 16/109 (14%)
Query: 690 IAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNG---SLGDW-----IHGE 741
           I E   L++++H N+V L     +  S     L LV+E+L       L D      +H  
Sbjct: 48  IREVSLLKDLKHANIVTLHDIIHTEKS-----LTLVFEYLDKDLKQYLDDCGNIINMHNV 102
Query: 742 RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +     +   L Y H      V+H DLKP N+L++E    K+ DFGLAR
Sbjct: 103 KLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLAR 148

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 479 RLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSS 538
           RL ++V ++L  N L+G  PN+ +    ++EL +  N+       +   L  L+ L+L  
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD 111
Query: 539 NKLSGSIPSDLQNLQALRSLNLTFN 563
           N++S  +P   ++L +L SLNL  N
Sbjct: 112 NQISCVMPGSFEHLNSLTSLNLASN 136

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +             + YLHN+    V+H DLK 
Sbjct: 115 DFVYVVLEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNN---RVIHRDLKL 170
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+++M  K+GDFGLA     +++       T    G+  Y+ PE
Sbjct: 171 GNLFLNDDMDVKIGDFGLA----TKIEFDGERKKT--LCGTPNYIAPE 212

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +             + YLHN+    V+H DLK 
Sbjct: 115 DFVYVVLEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNN---RVIHRDLKL 170
Query: 771 GNILLDEEMTAKVGDFGLA 789
           GN+ L+++M  K+GDFGLA
Sbjct: 171 GNLFLNDDMDVKIGDFGLA 189

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 88  DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 143
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+         V  G+  Y+ PE
Sbjct: 144 GNLFLNEDLEVKIGDFGLA----TKVEYDG--ERKKVLCGTPNYIAPE 185

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 13/79 (16%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +             + YLHN+    V+H DLK 
Sbjct: 115 DFVYVVLEICRRRSLLE-LHKRRKAVTEPEARYFMRQTIQGVQYLHNN---RVIHRDLKL 170
Query: 771 GNILLDEEMTAKVGDFGLA 789
           GN+ L+++M  K+GDFGLA
Sbjct: 171 GNLFLNDDMDVKIGDFGLA 189

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF--LSNGSLGDWIHGERKNE------LD 747
           L+ V H+N++ L+   +    K +E    VY    L + +L   IH E  +E        
Sbjct: 77  LKCVNHKNIISLLNVFTP--QKTLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQ 134
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +   + +LH+     ++H DLKP NI++  + T K+ DFGLAR
Sbjct: 135 MLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 174

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 90  DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 145
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+       T    G+  Y+ PE
Sbjct: 146 GNLFLNEDLEVKIGDFGLA----TKVEYDGERKKT--LCGTPNYIAPE 187

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF--LSNGSLGDWIHGERKNE------LD 747
           L+ V H+N++ L+   +    K +E    VY    L + +L   IH E  +E        
Sbjct: 75  LKCVNHKNIISLLNVFTP--QKTLEEFQDVYLVMELMDANLCQVIHMELDHERMSYLLYQ 132
Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           +   + +LH+     ++H DLKP NI++  + T K+ DFGLAR
Sbjct: 133 MLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR 172

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 94  DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 149
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+       T    G+  Y+ PE
Sbjct: 150 GNLFLNEDLEVKIGDFGLA----TKVEYDGERKKT--LCGTPNYIAPE 191

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L +V E+L+ GSL D +     +E  I +       AL++LH++    V+H D+K  NIL
Sbjct: 92  LWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNIL 148
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           L  + + K+ DFG    +      +S++  T  +M         YG
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYG 194

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 90/219 (41%), Gaps = 57/219 (26%)
Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
           N S + ++G+G FG V                       + E+    + F+ E   +   
Sbjct: 46  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQR--RDFLGEASIMGQF 103
Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT---------- 749
            H N+++L      + +K+   + +V E + NGSL  ++   RK++   T          
Sbjct: 104 DHPNIIRL----EGVVTKSKPVM-IVTEXMENGSLDSFL---RKHDAQFTVIQLVGMLRG 155
Query: 750 --SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
             S + YL    ++  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T  
Sbjct: 156 IASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVL---EDDPEAAYTTRG 209
Query: 808 FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
               I +  PE     + ++A DV +       + IV W
Sbjct: 210 GKIPIRWTSPEAIAYRKFTSASDVWS-------YGIVLW 241

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 42/182 (23%)
Query: 669 IGSGSFGSVL--HNERTG---SWKSFIA-------------ECETLRNVRHRNLVKLITS 710
           IG GS+G V    N  TG   + K F+              E   L+ ++H NLV L+  
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70
Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDIT--------SALDYLH-NDCEV 761
                 +    L LV+E+  +  L +    +R     +          A+++ H ++C  
Sbjct: 71  -----FRRKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNC-- 123
Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLL---ERVDNQSS---ISSTHVFMGSIGYV 815
             +H D+KP NIL+ +    K+ DFG AR L    +  D++ +     S  + +G   Y 
Sbjct: 124 --IHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYG 181
Query: 816 PP 817
           PP
Sbjct: 182 PP 183

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 90  DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 145
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+       T    G+  Y+ PE
Sbjct: 146 GNLFLNEDLEVKIGDFGLA----TKVEYDGERKKT--LCGTPNYIAPE 187

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 45/189 (23%)
Query: 660 TGNFSHENLIGSGSFGSVL--HNERTGSW-----------------KSFIAECETLRNVR 700
           +  +  + ++G GSFG V+   ++ TG                   +S + E + L+ + 
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84
Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSAL 752
           H N++KL         ++  +  LV E  + G L D I   ++ +E+D       + S +
Sbjct: 85  HPNIMKLYEFF-----EDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGI 139
Query: 753 DYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
            Y+H +    +VH DLKP N+LL+   ++   ++ DFGL+         +  I       
Sbjct: 140 TYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI------- 189
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 190 GTAYYIAPE 198

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 112 DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 167
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+         V  G+  Y+ PE
Sbjct: 168 GNLFLNEDLEVKIGDFGLA----TKVEYDG--ERKKVLCGTPNYIAPE 209

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 652 SYDELRRATGNFSHE---------NLIGSGSFGSVLHNE----------------RTG-- 684
           +Y+E  RA  +F+ E          +IGSG  G V +                  + G  
Sbjct: 31  TYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT 90
Query: 685 --SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
               + F++E   +    H N+++L    +           +V E++ NGSL  ++   R
Sbjct: 91  ERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RGRLAMIVTEYMENGSLDTFL---R 142
Query: 743 KNELDIT------------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            ++   T            + + YL    ++  VH DL   N+L+D  +  KV DFGL+R
Sbjct: 143 THDGQFTIMQLVGMLRGVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            L +  D   + +   +    I +  PE       S+A DV +       F +V W
Sbjct: 200 VLEDDPDAAXTTTGGKI---PIRWTAPEAIAFRTFSSASDVWS-------FGVVMW 245

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 52/173 (30%)
Query: 662 NFSHENLIGSGSFGSVLHN-------------ERTGSWKS------FIAECETLRNV-RH 701
           +   +++IG G+FG VL               +R   + S      F  E E L  +  H
Sbjct: 23  DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 82
Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------- 745
            N++ L+ +C     ++  +L L  E+  +G+L D++   R  E                
Sbjct: 83  PNIINLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 137
Query: 746 --------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    D+   +DYL    +   +H +L   NIL+ E   AK+ DFGL+R
Sbjct: 138 SQQLLHFAADVARGMDYL---SQKQFIHRNLAARNILVGENYVAKIADFGLSR 187

>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The Kinase Domain Of Focal Adhesion Kinase With A Phosphorylated Activation Loop Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKFSL 108
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 109 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 166 XXKASKGKL-----PIKWMAPESINFRRFTSASDV 195

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 663 FSHENLIGSGSFGSVL-----HNERTGSWKSFIAECETLRNVRHRNLVKLITSCSS---- 713
           F+    IG GSFG V        ++  + K    E         +  + +++ C S    
Sbjct: 29  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 88
Query: 714 -------LDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDC 759
                   D+K    L ++ E+L  GS  D +     +E  I +        LDYLH++ 
Sbjct: 89  KYYGSYLKDTK----LWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEK 144
Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           ++   H D+K  N+LL E    K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 145 KI---HRDIKAANVLLSEHGEVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 194

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 45/189 (23%)
Query: 660 TGNFSHENLIGSGSFGSVL--HNERTGSW-----------------KSFIAECETLRNVR 700
           +  +  + ++G GSFG V+   ++ TG                   +S + E + L+ + 
Sbjct: 48  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 107
Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSAL 752
           H N++KL         ++  +  LV E  + G L D I   ++ +E+D       + S +
Sbjct: 108 HPNIMKLYEFF-----EDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGI 162
Query: 753 DYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
            Y+H +    +VH DLKP N+LL+   ++   ++ DFGL+         +  I       
Sbjct: 163 TYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI------- 212
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 213 GTAYYIAPE 221

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 720 EFLALVYEFLSNGSLGDWIHGERKNELD---------ITSALDYLHNDCEVPVVHSDLKP 770
           +F+ +V E     SL + +H  RK   +         I     YLH +    V+H DLK 
Sbjct: 114 DFVFVVLELCRRRSLLE-LHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKL 169
Query: 771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GN+ L+E++  K+GDFGLA     +V+         V  G+  Y+ PE
Sbjct: 170 GNLFLNEDLEVKIGDFGLA----TKVEYDG--ERKKVLCGTPNYIAPE 211

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 45/189 (23%)
Query: 660 TGNFSHENLIGSGSFGSVL--HNERTGSW-----------------KSFIAECETLRNVR 700
           +  +  + ++G GSFG V+   ++ TG                   +S + E + L+ + 
Sbjct: 49  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 108
Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSAL 752
           H N++KL         ++  +  LV E  + G L D I   ++ +E+D       + S +
Sbjct: 109 HPNIMKLYEFF-----EDKGYFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGI 163
Query: 753 DYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
            Y+H +    +VH DLKP N+LL+   ++   ++ DFGL+         +  I       
Sbjct: 164 TYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI------- 213
Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 214 GTAYYIAPE 222

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 48/209 (22%)
Query: 652 SYDELRRATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAEC 693
           S D  RR T        +G G++G V                  L +E  G   + I E 
Sbjct: 32  SIDRYRRITK-------LGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREV 84
Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALD 753
             L+ ++HRN+++L     S+   N   L L++E+  N  L  ++       + +  +  
Sbjct: 85  SLLKELQHRNIIEL----KSVIHHNHR-LHLIFEYAEN-DLKKYMDKNPDVSMRVIKSFL 138
Query: 754 YL----HNDCEV-PVVHSDLKPGNILL-----DEEMTAKVGDFGLARFLLERVDNQSSIS 803
           Y      N C     +H DLKP N+LL      E    K+GDFGLAR     +       
Sbjct: 139 YQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQ----- 193
Query: 804 STHVFMGSIGYVPPEYGLGERP-STAGDV 831
            TH  + ++ Y PPE  LG R  ST+ D+
Sbjct: 194 FTHEII-TLWYRPPEILLGSRHYSTSVDI 221

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           +  + E + +  + +  +V+LI  C +      E L LV E    G L  ++ G+R+ E+
Sbjct: 55  EEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEMAGGGPLHKFLVGKRE-EI 107
Query: 747 DITSALDYLHNDC-------EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            +++  + LH          E   VH DL   N+LL     AK+ DFGL++ L
Sbjct: 108 PVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKAL 160

>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 108
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 109 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 166 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 195

>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And Kinase Domains Of Focal Adhesion Kinase. Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 108
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 109 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 165
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 166 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 195

>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In Complex With Novel Allosteric Inhibitor Length = 304

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 84  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 136
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 137 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 193
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 194 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 223

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 62/236 (26%)
Query: 652 SYDELRRATGNFSHE---------NLIGSGSFGSVLHNE----------------RTG-- 684
           +Y+E  RA  +F+ E          +IGSG  G V +                  + G  
Sbjct: 31  TYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYT 90
Query: 685 --SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
               + F++E   +    H N+++L    +           +V E++ NGSL  ++   R
Sbjct: 91  ERQRRDFLSEASIMGQFDHPNIIRLEGVVT-----RGRLAMIVTEYMENGSLDTFL---R 142
Query: 743 KNELDIT------------SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            ++   T            + + YL    ++  VH DL   N+L+D  +  KV DFGL+R
Sbjct: 143 THDGQFTIMQLVGMLRGVGAGMRYL---SDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
            L +  D   + +   +    I +  PE       S+A DV +       F +V W
Sbjct: 200 VLEDDPDAAYTTTGGKI---PIRWTAPEAIAFRTFSSASDVWS-------FGVVMW 245

>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak) Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 61  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQ-VRKYSL 113
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 114 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 170
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 171 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 200

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           L Y+H+     V+H DLKP N+L++E    K+GDFG+AR L
Sbjct: 172 LKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGL 209

>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A Methanesulfonamide Diaminopyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 53  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 105
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 106 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 162
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 163 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 192

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L +V E+L+ GSL D +     +E  I +       AL++LH++    V+H D+K  NIL
Sbjct: 92  LWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNIL 148
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           L  + + K+ DFG    +      +S +  T  +M         YG
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYG 194

>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Pyrrolo[2,3- D]thiazole Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 59  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 111
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 112 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 168
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 169 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 198

>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 58  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKYSL 110
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 111 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDST 167
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 168 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 197

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           L Y+H+     V+H DLKP N+L++E    K+GDFG+AR L
Sbjct: 171 LKYMHS---AQVIHRDLKPSNLLVNENCELKIGDFGMARGL 208

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 669 IGSGSFGSVLH--NERTGS-------WKSFIAECETLRNVR----------HRNLVKLIT 709
           +G G++G V    + RTG        + +F    +  R  R          H N+V L+ 
Sbjct: 17  LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLL- 75
Query: 710 SCSSLDSKNMEFLALVYEFLSN-------GSLGDWIHGERKNELDITSALDYLHNDCEVP 762
             + L + N   + LV++++          ++ + +H +      +   + YLH+     
Sbjct: 76  --NVLRADNDRDVYLVFDYMETDLHAVIRANILEPVHKQYV-VYQLIKVIKYLHSGG--- 129
Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLL-----------------ERVDNQSSISST 805
           ++H D+KP NILL+ E   KV DFGL+R  +                 E  D+   I + 
Sbjct: 130 LLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTD 189
Query: 806 HVFMGSIGYVPPEYGLGERPSTAG 829
           +V   +  Y  PE  LG    T G
Sbjct: 190 YV--ATRWYRAPEILLGSTKYTKG 211

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
            I+E E ++ + +H+N++ L+ +C+  D      L ++ E+ S G+L +++   R   L+
Sbjct: 65  LISEMEMMKMIGKHKNIINLLGACTQ-DGP----LYVIVEYASKGNLREYLQARRPPGLE 119
Query: 748 ------------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV 783
                                   +   ++YL +      +H DL   N+L+ E+   K+
Sbjct: 120 YCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKI 176
Query: 784 GDFGLAR 790
            DFGLAR
Sbjct: 177 ADFGLAR 183

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L +V E+L+ GSL D +     +E  I +       AL++LH++    V+H D+K  NIL
Sbjct: 92  LWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNIL 148
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           L  + + K+ DFG    +      +S +  T  +M         YG
Sbjct: 149 LGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYG 194

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
            I+E E ++ + +H+N++ L+ +C+  D      L ++ E+ S G+L +++   R   L+
Sbjct: 72  LISEMEMMKMIGKHKNIINLLGACTQ-DGP----LYVIVEYASKGNLREYLQARRPPGLE 126
Query: 748 ------------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV 783
                                   +   ++YL +      +H DL   N+L+ E+   K+
Sbjct: 127 YSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKI 183
Query: 784 GDFGLAR 790
            DFGLAR
Sbjct: 184 ADFGLAR 190

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L +V E+L+ GSL D +     +E  I +       AL++LH++    V+H D+K  NIL
Sbjct: 93  LWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNIL 149
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           L  + + K+ DFG    +      +S +  T  +M         YG
Sbjct: 150 LGMDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYG 195

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 33/127 (25%)
Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
            I+E E ++ + +H+N++ L+ +C+  D      L ++ E+ S G+L +++   R   L+
Sbjct: 69  LISEMEMMKMIGKHKNIINLLGACTQ-DGP----LYVIVEYASKGNLREYLQARRPPGLE 123
Query: 748 ------------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV 783
                                   +   ++YL +      +H DL   N+L+ E+   K+
Sbjct: 124 YSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVLVTEDNVMKI 180
Query: 784 GDFGLAR 790
            DFGLAR
Sbjct: 181 ADFGLAR 187

>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With Bis- Anilino Pyrimidine Inhibitor Length = 276

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 25/155 (16%)
Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL 746
           + F+ E  T+R   H ++VKLI     + ++N   + ++ E  + G L  ++   RK  L
Sbjct: 56  EKFLQEALTMRQFDHPHIVKLI----GVITENP--VWIIMELCTLGELRSFLQV-RKFSL 108
Query: 747 DITS----------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
           D+ S          AL YL +      VH D+   N+L+      K+GDFGL+R++ +  
Sbjct: 109 DLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDST 165
Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
             ++S          I ++ PE     R ++A DV
Sbjct: 166 YYKASKGKL-----PIKWMAPESINFRRFTSASDV 195

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 722 LALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSDLKPGNIL 774
           L ++ E+L  GS  D +     +E  I +        LDYLH++ ++   H D+K  N+L
Sbjct: 80  LWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKI---HRDIKAANVL 136
Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           L E    K+ DFG+A  L    D Q      + F+G+  ++ PE
Sbjct: 137 LSEHGEVKLADFGVAGQL---TDTQ---IKRNTFVGTPFWMAPE 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	929
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-135
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-129
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-90
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-80
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-81
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-60
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-83
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-65
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-73
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-68
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-41
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-62
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-55
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-27
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	3e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-53
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-40
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-52
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-50
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-16
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-49
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-44
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-49
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-44
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-36
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-39
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-25
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-21
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
3soc_A	322	Activin receptor type-2A; structural genomics cons	1e-38
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	6e-37
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-31
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-33
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-29
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-28
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-25
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-32
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-32
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	8e-32
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	7e-31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-26
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-24
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-30
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-19
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-29
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	6e-29
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-28
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-20
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-28
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-28
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-28
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-27
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-27
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-27
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-26
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	7e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-24
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	3e-23
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-23
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-22
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-18
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	4e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-22
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-21
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-20
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-10
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-20
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	1e-20
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-20
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-20
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	4e-20
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	6e-20
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-19
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-11
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	4e-19
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	4e-19
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-19
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	9e-19
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-05
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-18
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-18
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	2e-18
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	3e-18
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	3e-18
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-18
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	4e-18
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	5e-18
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	6e-18
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-18
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	8e-18
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	8e-18
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-17
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	1e-17
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-17
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-17
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	1e-17
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-17
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-17
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-17
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-17
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-17
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-17
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	4e-17
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-17
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	5e-17
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-17
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	5e-17
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-17
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	6e-17
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	7e-17
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	9e-17
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	9e-17
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	9e-17
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	1e-16
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	1e-16
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-16
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-16
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	2e-16
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-16
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-07
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-16
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-16
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-16
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-16
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	4e-16
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	6e-16
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-16
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	7e-16
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	9e-16
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	1e-15
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-15
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-15
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	2e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-15
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-15
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-15
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-15
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	2e-15
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	2e-15
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-15
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-15
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	3e-15
3ork_A	311	Serine/threonine protein kinase; structural genomi	3e-15
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-15
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-15
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-15
3bhy_A	283	Death-associated protein kinase 3; death associate	4e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-15
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-15
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	6e-15
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-15
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	7e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	8e-15
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	9e-15
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-14
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-14
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	1e-14
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-14
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-14
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-14
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-14
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-14
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-14
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-14
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	2e-14
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-14
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-14
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-14
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	3e-14
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-14
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-14
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	4e-14
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-14
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-14
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	6e-14
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	8e-14
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	1e-13
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-13
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-13
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-13
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-13
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-13
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-13
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	3e-13
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-13
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-13
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	5e-13
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	5e-13
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	6e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	6e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	1e-12
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-12
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-06
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	3e-12
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-07
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	6e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	6e-12
3o0g_A	292	Cell division protein kinase 5; kinase activator c	9e-12
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	9e-12
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	9e-12
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	9e-12
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-11
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	1e-11
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	1e-11
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-11
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-11
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-11
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	2e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	2e-11
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	3e-11
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-11
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-11
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	6e-11
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	6e-11
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	7e-11
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	9e-11
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	9e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-10
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-10
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	2e-10
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	2e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	2e-10
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-10
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	2e-10
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	2e-10
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	2e-10
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	3e-10
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-10
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-10
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	5e-10
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	5e-10
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	6e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	6e-10
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	7e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-10
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	8e-10
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	9e-10
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	9e-10
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	9e-10
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	9e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	1e-09
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-09
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-09
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-05
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	2e-09
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-09
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-09
3fme_A	290	Dual specificity mitogen-activated protein kinase;	7e-09
2dyl_A	318	Dual specificity mitogen-activated protein kinase	8e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-08
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-06
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	6e-08
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	7e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	8e-08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	9e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-05
3uqc_A	286	Probable conserved transmembrane protein; structur	5e-07
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-04
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-05
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-05
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	1e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  422 bits (1086), Expect = e-135
 Identities = 158/576 (27%), Positives = 261/576 (45%), Gaps = 66/576 (11%)

Query: 21  SASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSS 80
           S S  +  +   L+SFK  +      + L  W+ + +PCT+ GV C +  ++V  ++LSS
Sbjct: 5   SPSQSLYREIHQLISFKDVLP---DKNLLPDWSSNKNPCTFDGVTCRD--DKVTSIDLSS 59

Query: 81  FGLE---GTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELP- 136
             L      +S  + +L+ L S+ L N+ ++G++         L  L++S N+L G +  
Sbjct: 60  KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTT 118

Query: 137 -VNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
             ++   + LK L++ +N +           L SL+VL+   N + G+            
Sbjct: 119 LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS---- 174

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
                 LK L ++ N+++G V   +    +L  L ++SN     IP+        L    
Sbjct: 175 -DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGD--CSALQHLD 229

Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDD 315
              N+ +G    ++   T ++++ ++ N   G +PP                        
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP------------------------ 265

Query: 316 EGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR 375
                         L YL+L  N+F G+IP+ +    + L+ L L GNH YG +P   G 
Sbjct: 266 ---------LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 376 LRSLTLLDLSYNSISGEIPIE-IGQLQGLQVLGLAGNEIPGGIPNSLANLK-KLNQIDLS 433
              L  L LS N+ SGE+P++ + +++GL+VL L+ NE  G +P SL NL   L  +DLS
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376

Query: 434 GNELTGEIPISFGNFQ--SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN 491
            N  +G I  +       +L  + L NN   G I        P  +S    +V++ LS N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI--------PPTLSNCSELVSLHLSFN 428

Query: 492 SLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQN 551
            LSG +P+SL +   L +L +  N   G IP  +  +K LE L L  N L+G IPS L N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488

Query: 552 LQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGN 586
              L  ++L+ N L G +P   G   N++ + L  N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  407 bits (1048), Expect = e-129
 Identities = 157/520 (30%), Positives = 246/520 (47%), Gaps = 35/520 (6%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
           LN+SS    G I P    L  L+ + L  NK +G +P  + G    L  L++S N+  G 
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 135 LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPS 194
           +P      + L+ L L +N  +G +  D L  +R L+VL+   N   G +P S+ NL   
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--- 366

Query: 195 DLSRLENLKVLDLTINRLAGTVPSTIYN--MTSLVHLRLASNQLGGEIPYDVRDTLPNLL 252
                 +L  LDL+ N  +G +   +      +L  L L +N   G+IP  + +    L+
Sbjct: 367 ----SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELV 421

Query: 253 DFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS 312
                FN  +G IP SL +L+ ++ +++  N+LEG +P  L  +  L T  + FN +  +
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL--T 479

Query: 313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPAS 372
           G        + L+N T+LN+++L  N+  G+IP+ IG   N L+ L L  N   G IPA 
Sbjct: 480 G-----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAE 533

Query: 373 IGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDL 432
           +G  RSL  LDL+ N  +G IP  + +  G     +A N I G     + N     +   
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHG 589

Query: 433 SGN--ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD 490
           +GN  E  G          +    ++++    G+                 +++ +D+S 
Sbjct: 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS--------PTFDNNGSMMFLDMSY 641

Query: 491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQ 550
           N LSG +P  + +   L  L + +N  SG IP+ V +L+GL +LDLSSNKL G IP  + 
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701

Query: 551 NLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
            L  L  ++L+ NNL G +P  G F          NP LC
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLC 741

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  282 bits (724), Expect = 7e-83
 Identities = 113/407 (27%), Positives = 172/407 (42%), Gaps = 68/407 (16%)

Query: 62  PGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL 121
              +C N  N +  L L + G  G I P + N S L S+ L  N LSG +P  +G+L +L
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444

Query: 122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW 181
           R L +  N L+GE+P  +  +  L+ L L  N +TG +    L N  +L  ++   N L 
Sbjct: 445 RDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLT 503

Query: 182 GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
           G IP  I          LENL +L L+ N  +G +P+ + +  SL+ L L +        
Sbjct: 504 GEIPKWIGR--------LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT-------- 547

Query: 242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
                            N F G IP ++   +      +  N + G     + N    + 
Sbjct: 548 -----------------NLFNGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKE 586

Query: 302 YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
            +   N                               +F+G   E +   S   +   + 
Sbjct: 587 CHGAGNL-----------------------------LEFQGIRSEQLNRLST-RNPCNIT 616

Query: 362 GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
                G    +     S+  LD+SYN +SG IP EIG +  L +L L  N+I G IP+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 422 ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKG 468
            +L+ LN +DLS N+L G IP +      L  IDLSNN ++G IP+ 
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  298 bits (764), Expect = 8e-90
 Identities = 102/600 (17%), Positives = 186/600 (31%), Gaps = 105/600 (17%)

Query: 46  SSPLSYWNPSSSPCTW---PGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLS------- 95
           + P + WN +     W   PGV  N+ G RV GL+L  FG  G +   IG L+       
Sbjct: 54  TQPGANWNFNKELDMWGAQPGVSLNSNG-RVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112

Query: 96  ---------------------FLRSIQLQNNKLSGNLPREIG--NLFRLRVLNISFNNLQ 132
                                     Q                 +   L    I+ +  Q
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172

Query: 133 GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL- 191
             +  +     +   +  ++N IT       +  L  L+    G +              
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

Query: 192 ----------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
                            L++L  +++        +P+ +  +  +  + +A N+      
Sbjct: 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQ 290

Query: 242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN-LLEGTLPPGLGNLPFLR 300
                             +   +          IQII + +N L    +   L  +  L 
Sbjct: 291 -----------------LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLG 333

Query: 301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL 360
                +N++           + +  +   L  L L  NQ    IP +   F+ ++  L  
Sbjct: 334 MLECLYNQLEG--------KLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSF 384

Query: 361 GGNHIYGKIPA--SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP 418
             N +   IP       +  ++ +D SYN I                           + 
Sbjct: 385 AHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD-----------------PLD 426

Query: 419 NSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEIS 478
            +      ++ I+LS N+++      F     L SI+L  N +   IPK  L+   E   
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFK 485

Query: 479 RLENVVTIDLSDNSLSGNLPN-SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL--- 534
               + +IDL  N L+    +        L  + ++YN FS   P        L+     
Sbjct: 486 NTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR 544

Query: 535 ---DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL 591
              D   N+     P  +    +L  L +  N++  V  +E I  N+S + +K NP + +
Sbjct: 545 NQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKV--NEKITPNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  273 bits (699), Expect = 1e-80
 Identities = 90/544 (16%), Positives = 179/544 (32%), Gaps = 69/544 (12%)

Query: 75  GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE 134
            LN  ++  +G  +    N +F + + +   +        + +  R+  L++      G 
Sbjct: 41  ALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGV----SLNSNGRVTGLSLEGFGASGR 96

Query: 135 LPVNISKLTELKMLDLMANKITGRVTD---DQLRNLRSLQVLNFGKNLLWGSIPPSIANL 191
           +P  I +LTEL++L L ++             +    S +     +     +        
Sbjct: 97  VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPRE 156

Query: 192 ------------------IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLAS 233
                             I            +    N +   V   +  +T L    + +
Sbjct: 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGN 215

Query: 234 NQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL 293
           +    E             +  Y   +          NL ++  + + +      LP  L
Sbjct: 216 SPFVAENI----CEAWENENSEY--AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL 269

Query: 294 GNLPFLRTYNIGFNKIVSSGD-DEGLSFITSLTNSTHLNYLALDGNQF-EGKIPESIGNF 351
             LP ++  N+  N+ +S     +    +        +  + +  N      +  S+   
Sbjct: 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329

Query: 352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN 411
              L  L    N + GK+P + G    L  L+L+YN I+       G  + ++ L  A N
Sbjct: 330 KK-LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387

Query: 412 EIPGGIPNSLA--NLKKLNQIDLSGNELTG-------EIPISFGNFQSLLSIDLSNNRIN 462
           ++   IPN     ++  ++ ID S NE+          +  +     ++ SI+LSNN+I+
Sbjct: 388 KL-KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSG-------NLPNSLKNCKSLEELLMAYN 515
                       E  S    + +I+L  N L+        +   + KN   L  + + +N
Sbjct: 447 KFP--------KELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

Query: 516 QFSGPIPNI-VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSL------NLTFNNLEGV 568
           + +    +     L  L  +DLS N  S   P+   N   L+        +   N     
Sbjct: 499 KLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557

Query: 569 VPSE 572
            P  
Sbjct: 558 WPEG 561

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  234 bits (598), Expect = 2e-66
 Identities = 74/527 (14%), Positives = 150/527 (28%), Gaps = 126/527 (23%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSG-------------------NLPREIG 116
           +   S  +   +S  +  L+ LR   + N+                           +  
Sbjct: 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWD 246

Query: 117 NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG 176
           NL  L  + +       +LP  +  L E++++++  N+                      
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-------------------- 286

Query: 177 KNLLWGSIPPSIANL-IPSDLSRLENLKVLDLTINRLA-GTVPSTIYNMTSLVHLRLASN 234
                 S      +    +D    E ++++ +  N L    V +++  M  L  L    N
Sbjct: 287 ------SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 235 QLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL- 293
           QL G++P                          +  +   +  + + +N +   +P    
Sbjct: 341 QLEGKLP--------------------------AFGSEIKLASLNLAYNQITE-IPANFC 373

Query: 294 GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN 353
           G    +   +   NK+      + +  I    + + ++ +    N+      ++      
Sbjct: 374 GFTEQVENLSFAHNKL------KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP--- 424

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN-- 411
                          +  +  +  +++ ++LS N IS            L  + L GN  
Sbjct: 425 ---------------LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 412 -----EIPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNI 465
                        +  N   L  IDL  N+LT             L+ IDLS N  +   
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-- 527

Query: 466 PKGILRPLPEEISRLENVVTI------DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSG 519
                   P +      +         D   N      P  +  C SL +L +  N    
Sbjct: 528 -------FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK 580

Query: 520 PIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
               I      + VLD+  N       S +          L ++  +
Sbjct: 581 VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  294 bits (754), Expect = 6e-88
 Identities = 102/552 (18%), Positives = 186/552 (33%), Gaps = 27/552 (4%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLF--RLRVLNISFNNLQG 133
           L+LS  GL  T       L  L+ + L NNK+      E+       L+ L +S N ++ 
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185

Query: 134 ELPVNISKLTELKMLDLMANKITGRVTDD--QLRNLRSLQVLNFGKNLLWGSIPPSIANL 191
             P     +  L  L L   ++   +T+         S++ L+   + L  +   +   L
Sbjct: 186 FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVR------ 245
                 +  NL +LDL+ N L      +   +  L +  L  N +     + +       
Sbjct: 246 ------KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR 299

Query: 246 --DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYN 303
             +   +                 S   L  ++ + M  N + G        L  L+  +
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 304 IGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGN 363
           +  +   S       +F  SL +S  L+ L L  N+      ++     + L  L LG N
Sbjct: 360 LSNSFT-SLRTLTNETF-VSLAHSP-LHILNLTKNKISKIESDAFSWLGH-LEVLDLGLN 415

Query: 364 HIYGKIPAS-IGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI--PGGIPNS 420
            I  ++       L ++  + LSYN            +  LQ L L    +      P+ 
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
              L+ L  +DLS N +           + L  +DL +N +               +  L
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
            ++  ++L  N          K+   L+ + +  N  +    ++      L+ L+L  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 541 LSGSIPSDLQ-NLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPR 599
           ++           + L  L++ FN  +    S   F N  N      P+L     C  P 
Sbjct: 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTPP 655

Query: 600 S-HGSRLIILSI 610
             HG  + +   
Sbjct: 656 HYHGFPVRLFDT 667

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  275 bits (706), Expect = 4e-81
 Identities = 93/500 (18%), Positives = 175/500 (35%), Gaps = 55/500 (11%)

Query: 94  LSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMAN 153
            + +  + L +N+L            +L  L++ FN +    P    KL  LK+L+L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 154 KITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA 213
           +++  ++D       +L  L+   N +                   +NL  LDL+ N L+
Sbjct: 84  ELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK--------QKNLITLDLSHNGLS 134

Query: 214 GTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY-CFNRFTGKIPGSLHNL 272
            T   T   + +L  L L++N++      ++     + L  +    N+     PG  H +
Sbjct: 135 STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
             +  + + +  L  +L   L                                 +T +  
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLC----------------------------LELANTSIRN 226

Query: 333 LALDGNQFEGKIPESIGNFSN-ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISG 391
           L+L  +Q       +        L+ L L  N++      S   L  L    L YN+I  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 392 EIPIEIGQLQGLQVLGLAGN---------EIPGGIPNSLANLKKLNQIDLSGNELTGEIP 442
                +  L  ++ L L  +          +P     S   LK L  +++  N++ G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 443 ISFGNFQSLLSIDLSNNRIN-GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSL 501
             F    +L  + LSN+  +   +       L    S L     ++L+ N +S    ++ 
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH--SPLH---ILNLTKNKISKIESDAF 401

Query: 502 KNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNL 560
                LE L +  N+    +       L+ +  + LS NK      +    + +L+ L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 561 TFNNLEGVVPSEGIFRNMSN 580
               L+ V  S   F+ + N
Sbjct: 462 RRVALKNVDSSPSPFQPLRN 481

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  243 bits (622), Expect = 2e-69
 Identities = 89/471 (18%), Positives = 159/471 (33%), Gaps = 54/471 (11%)

Query: 120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
              V + S   L  ++P ++   T + +L+L  N++   +          L  L+ G N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNT 60

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGE 239
           +    P             L  LKVL+L  N L+     T    T+L  L L SN +   
Sbjct: 61  ISKLEPELCQK--------LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI--- 109

Query: 240 IPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFL 299
                                             N+  + ++HN L  T       L  L
Sbjct: 110 ----------------------QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 300 RTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLY 359
           +   +  NKI +   +E       +  ++ L  L L  NQ +   P         L  L+
Sbjct: 148 QELLLSNNKIQALKSEE-----LDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-LFGLF 201

Query: 360 LGGNHIYGKIPASIG---RLRSLTLLDLSYNSISGEIPIEIGQLQG--LQVLGLAGNEIP 414
           L    +   +   +       S+  L LS + +S         L+   L +L L+ N + 
Sbjct: 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 415 GGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL- 473
               +S A L +L    L  N +      S     ++  ++L  +    +I    L  + 
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID 321

Query: 474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVA----ELK 529
                 L+ +  +++ DN + G   N      +L+ L ++ +  S               
Sbjct: 322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381

Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
            L +L+L+ NK+S         L  L  L+L  N +   +     +R + N
Sbjct: 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLEN 431

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  206 bits (527), Expect = 1e-56
 Identities = 84/462 (18%), Positives = 143/462 (30%), Gaps = 61/462 (13%)

Query: 62  PGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL 121
                      +  L+LS   L    +     L  L    L+ N +       +  LF +
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298

Query: 122 RVLN---------ISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQV 172
           R LN         IS  +L      +   L  L+ L++  N I G +  +    L +L+ 
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLKY 357

Query: 173 LNFGKNLLWGSIPPSIANLIPSDLSRLEN--LKVLDLTINRLAGTVPSTIYNMTSLVHLR 230
           L+   +        S+  L       L +  L +L+LT N+++         +  L  L 
Sbjct: 358 LSLSNSFT------SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411

Query: 231 LASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLP 290
           L  N++G E+                               L NI  I +++N       
Sbjct: 412 LGLNEIGQELT------------------------GQEWRGLENIFEIYLSYNKYLQLTR 447

Query: 291 PGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGN 350
                +P L+   +    +     D   S    L N   L  L L  N       + +  
Sbjct: 448 NSFALVPSLQRLMLRRVAL--KNVDSSPSPFQPLRN---LTILDLSNNNIANINDDMLEG 502

Query: 351 FSNELSKLYLGGNHI--------YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG 402
               L  L L  N++         G     +  L  L +L+L  N            L  
Sbjct: 503 LEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG-NFQSLLSIDLSNNRI 461
           L+++ L  N +     +   N   L  ++L  N +T      FG  F++L  +D+  N  
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621

Query: 462 NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN 503
           +       +      I+  E    I    +    N P     
Sbjct: 622 DCTCES--IAWFVNWIN--ETHTNIPELSSHYLCNTPPHYHG 659

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  164 bits (416), Expect = 4e-42
 Identities = 58/263 (22%), Positives = 109/263 (41%), Gaps = 19/263 (7%)

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
           +           +   ++P+ +   +N ++ L L  N +     A+  R   LT LD+ +
Sbjct: 3   TVSHEVADCSHLKLT-QVPDDL--PTN-ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF 58

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           N+IS   P    +L  L+VL L  NE+      + A    L ++ L  N +       F 
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV 118

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK- 505
             ++L+++DLS+N ++                +LEN+  + LS+N +       L     
Sbjct: 119 KQKNLITLDLSHNGLSSTK--------LGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 506 -SLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQ---NLQALRSLNLT 561
            SL++L ++ NQ     P     +  L  L L++ +L  S+   L       ++R+L+L+
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 562 FNNLEGVVPSEGIFRNMSNVHLK 584
            + L     S   F  +   +L 
Sbjct: 231 NSQLSTT--SNTTFLGLKWTNLT 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  279 bits (717), Expect = 5e-87
 Identities = 87/272 (31%), Positives = 141/272 (51%), Gaps = 15/272 (5%)

Query: 323 SLTNSTHLNYLALDGNQFEG--KIPESIGNFSNELSKLYLGG-NHIYGKIPASIGRLRSL 379
           + T +  +N L L G        IP S+ N    L+ LY+GG N++ G IP +I +L  L
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY-LNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 380 TLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG 439
             L +++ ++SG IP  + Q++ L  L  + N + G +P S+++L  L  I   GN ++G
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 440 EIPISFGNFQSLL-SIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP 498
            IP S+G+F  L  S+ +S NR+ G I        P   + L N+  +DLS N L G+  
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKI--------PPTFANL-NLAFVDLSRNMLEGDAS 214

Query: 499 NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSL 558
               + K+ +++ +A N  +  +  +    K L  LDL +N++ G++P  L  L+ L SL
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273

Query: 559 NLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
           N++FNNL G +P  G  +         N  LC
Sbjct: 274 NVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (530), Expect = 1e-60
 Identities = 86/314 (27%), Positives = 129/314 (41%), Gaps = 48/314 (15%)

Query: 27  NTDKEALMSFKSQISQESPSSPLSYWNPSSSPC--TWPGVICNNFGN--RVIGLNLSSFG 82
             DK+AL+  K  +   +P++ LS W P++  C  TW GV+C+      RV  L+LS   
Sbjct: 5   PQDKQALLQIKKDLG--NPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN 61

Query: 83  LEGT---------------------------ISPHIGNLSFLRSIQLQNNKLSGNLPREI 115
           L                              I P I  L+ L  + + +  +SG +P  +
Sbjct: 62  LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 116 GNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL-QVLN 174
             +  L  L+ S+N L G LP +IS L  L  +    N+I+G +  D   +   L   + 
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMT 180

Query: 175 FGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASN 234
             +N L G IPP+ ANL         NL  +DL+ N L G       +  +   + LA N
Sbjct: 181 ISRNRLTGKIPPTFANL---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 235 QLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLG 294
            L  ++   V     NL       NR  G +P  L  L  +  + ++ N L G +P G G
Sbjct: 232 SLAFDLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G 288

Query: 295 NLPFLRTYNIGFNK 308
           NL          NK
Sbjct: 289 NLQRFDVSAYANNK 302

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  278 bits (712), Expect = 8e-83
 Identities = 107/530 (20%), Positives = 176/530 (33%), Gaps = 37/530 (6%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+LS   ++        +LS L ++ L  N +          L  L+ L     NL    
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              I  L  LK L++  N I      +   NL +L+ L+   N +       +  L    
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL---- 251
           L  L     LDL++N +    P     +  L  L L +N     +       L  L    
Sbjct: 177 LLNLS----LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 252 --LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE---GTLPPGLGNLPFLRTYNIGF 306
             L               +L  L N+ I       L+     +      L  + ++++  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 307 NKIVSSGDDEGLS----------FITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS 356
             I    D                          +   L     +G    S  +  + L 
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS-LE 350

Query: 357 KLYLGGNHIY--GKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIP 414
            L L  N +   G    S     SL  LDLS+N +   +      L+ L+ L    + + 
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409

Query: 415 GGIPNS-LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL 473
                S   +L+ L  +D+S           F    SL  + ++ N    N         
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL------- 462

Query: 474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
           P+  + L N+  +DLS   L    P +  +  SL+ L M++N F          L  L+V
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 534 LDLSSNKLSGSIPSDLQNL-QALRSLNLTFNNLEGVVPSEGIFRNMSNVH 582
           LD S N +  S   +LQ+   +L  LNLT N+       +   + + +  
Sbjct: 523 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  253 bits (648), Expect = 1e-73
 Identities = 102/513 (19%), Positives = 181/513 (35%), Gaps = 52/513 (10%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKIT 156
            +++ L  N L         +   L+VL++S   +Q         L+ L  L L  N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 157 GRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT- 215
             +       L SLQ L   +  L       I +        L+ LK L++  N +    
Sbjct: 90  S-LALGAFSGLSSLQKLVAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFK 140

Query: 216 VPSTIYNMTSLVHLRLASNQLGGEIPYDVRDT--LPNLLDFIYC-FNRFTGKIPGSLHNL 272
           +P    N+T+L HL L+SN++      D+R    +P L   +    N      PG+   +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 273 TNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSF--ITSLTNSTH 329
             +  + + +N     +    +  L  L  + +   +  + G+ E      +  L N T 
Sbjct: 201 -RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 330 LNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSI 389
             +     + +   I +     +N +S   L    I  +             L+L     
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTN-VSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKF 316

Query: 390 S-------------------GEIPIEIGQLQGLQVLGLAGNEI--PGGIPNSLANLKKLN 428
                               G        L  L+ L L+ N +   G    S      L 
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376

Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
            +DLS N +   +  +F   + L  +D  ++ +       +   L        N++ +D+
Sbjct: 377 YLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------NLIYLDI 428

Query: 489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI-PNIVAELKGLEVLDLSSNKLSGSIPS 547
           S                SLE L MA N F     P+I  EL+ L  LDLS  +L    P+
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488

Query: 548 DLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
              +L +L+ LN++ NN   +      ++ +++
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTF--PYKCLNS 519

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  229 bits (586), Expect = 4e-65
 Identities = 101/522 (19%), Positives = 176/522 (33%), Gaps = 62/522 (11%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKL-SGNLPREIGNLFRLRVLNISFNNLQG- 133
           L      L    +  IG+L  L+ + + +N + S  LP    NL  L  L++S N +Q  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 134 --------------------------ELPVNISKLTELKMLDLMANKITGRVTDDQLRNL 167
                                      +     K   L  L L  N  +  V    ++ L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL---AGTVPSTIYNMT 224
             L+V              ++     S L  L NL + +  +  L      +      +T
Sbjct: 225 AGLEVHRLVLGEFRNE--GNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
           ++    L S  +     +                 +F       L +L  +     T   
Sbjct: 283 NVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRL-----TFTS 334

Query: 285 LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI 344
            +G       +LP L   ++  N +   G         S   +T L YL L  N     +
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKG-----CCSQSDFGTTSLKYLDLSFNGVIT-M 388

Query: 345 PESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
             +       L  L    +++      S+   LR+L  LD+S+             L  L
Sbjct: 389 SSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447

Query: 404 QVLGLAGNEIPGGI-PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
           +VL +AGN       P+    L+ L  +DLS  +L    P +F +  SL  +++S+N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC-KSLEELLMAYNQFSGPI 521
                            L ++  +D S N +  +    L++   SL  L +  N F+   
Sbjct: 508 SLDT--------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 559

Query: 522 PNI--VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT 561
            +   +  +K    L +   ++  + PSD Q +  + SLN+T
Sbjct: 560 EHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (394), Expect = 8e-40
 Identities = 53/271 (19%), Positives = 90/271 (33%), Gaps = 17/271 (6%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA 409
           N       L L  N +      S      L +LDLS   I          L  L  L L 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI 469
           GN I      + + L  L ++      L        G+ ++L  +++++N I        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF----- 139

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE----ELLMAYNQFSGPIPNIV 525
              LPE  S L N+  +DLS N +       L+    +      L ++ N  +   P   
Sbjct: 140 --KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 526 AELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEG----VVPSEGIFRNMSN 580
            E++ L  L L +N  S ++    +Q L  L    L               +     + N
Sbjct: 198 KEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCN 256

Query: 581 VHLKGNPKLCLQLGCENPRSHGSRLIILSII 611
           + ++      L    ++     + L  +S  
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  272 bits (698), Expect = 1e-78
 Identities = 112/650 (17%), Positives = 212/650 (32%), Gaps = 111/650 (17%)

Query: 19  ADSASVGINTDKEALMSFKSQISQES---------PSSPLSYWNPSSSPCTWPGVICNNF 69
               +     D +AL +    +  ++          +     WN +     W      + 
Sbjct: 260 QLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDL 319

Query: 70  GN--RVIGLNLSSFGLEGTISPHIGNLSFLRSIQL------------------------Q 103
            N  RV GL+L+ FG +G +   IG L+ L+ +                          +
Sbjct: 320 DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379

Query: 104 NNKLSGNLPRE-IGNLFRLRVLNISFNNLQGELPV-NISKLTELKMLDLMANKITGRVT- 160
            +++  +  +  +    RL + ++  + +     +  I K + + + D     +T R+T 
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF 439

Query: 161 -DDQLRNLRSLQVLNFGKNLLWGSIPP-----------SIANLIPSDLSRLENLKVLDLT 208
               ++ L  LQ++ F  +                             S L++L  ++L 
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 209 INRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGS 268
                  +P  +Y++  L  L +A N+           T                ++   
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT----------------RLADD 543

Query: 269 LHNLTNIQIIRMTHNLLEGTLPP--GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTN 326
                 IQI  M +N LE   P    L  +  L   +   NK         +  + +   
Sbjct: 544 EDTGPKIQIFYMGYNNLEE-FPASASLQKMVKLGLLDCVHNK---------VRHLEAFGT 593

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP--ASIGRLRSLTLLDL 384
           +  L  L LD NQ E  IPE    F++++  L    N +   IP   +   +  +  +D 
Sbjct: 594 NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDF 651

Query: 385 SYNSISGEIP-----IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT- 438
           SYN I  E       ++  +      + L+ NEI        A    ++ I LS N +T 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711

Query: 439 ------GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
                      ++ N   L +IDL  N++   +            + L  +  +D+S N 
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDF------RATTLPYLSNMDVSYNC 764

Query: 493 LSGNLPNSLKNCKSLEEL------LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP 546
            S   P    N   L+            N+     P  +     L  L + SN +   + 
Sbjct: 765 FSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVD 822

Query: 547 SDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCE 596
             L     L  L++  N    +  +       + +++    K     GC+
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 2e-09
 Identities = 21/201 (10%), Positives = 55/201 (27%), Gaps = 11/201 (5%)

Query: 392 EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSL 451
              +   +L     + +   E    I +  A       +D            +  +  + 
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW 302

Query: 452 LSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELL 511
            + +   +                ++     V  + L+     G +P+++     L+ L 
Sbjct: 303 -NFNKELDMWGDQPG--------VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLS 353

Query: 512 MAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVP 570
              +  +        E    ++ +   +++        L   Q L   +L  + +    P
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINR-NP 412

Query: 571 SEGIFRNMSNVHLKGNPKLCL 591
                +  S + LK      L
Sbjct: 413 EMKPIKKDSRISLKDTQIGNL 433

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  253 bits (647), Expect = 1e-73
 Identities = 99/518 (19%), Positives = 174/518 (33%), Gaps = 37/518 (7%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L  S   L    +     L  L  + L   ++         +  RL  L ++ N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              +S    LK L  +   I+  +    L N ++L+ L  G N +     P         
Sbjct: 98  ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFP----- 151

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSL--VHLRLASNQLGGEIPYDVRDTLPNLLD 253
               E LKVLD   N +       + ++     + L L  N + G  P      +   L+
Sbjct: 152 ---TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLN 208

Query: 254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF--LRTYNIGFNKIVS 311
           F    N            + ++ +        E   P     L    + + N+  +   +
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
              +       +    + L  L L       ++P  +   S  L KL L  N        
Sbjct: 269 ISSN-------TFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQI 319

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIE-IGQLQGLQVLGLAGNEI--PGGIPNSLANLKKLN 428
           S     SLT L +  N+   E+    +  L+ L+ L L+ ++I         L NL  L 
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQ 379

Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
            ++LS NE       +F     L  +DL+  R+     +   + L         +  ++L
Sbjct: 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH-------LLKVLNL 432

Query: 489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI---PNIVAELKGLEVLDLSSNKLSGSI 545
           S + L  +         +L+ L +  N F        N +  L  LE+L LS   LS   
Sbjct: 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492

Query: 546 PSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHL 583
                +L+ +  ++L+ N L           ++  ++L
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIE--ALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  237 bits (607), Expect = 5e-68
 Identities = 93/516 (18%), Positives = 168/516 (32%), Gaps = 42/516 (8%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
            N  + GL   I   +   +    ++   N L          L  L  L+++   +    
Sbjct: 17  YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
                    L  L L AN +   + +  L   ++L+ L F +          I+++    
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQT--------GISSIDFIP 124

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL--LD 253
           L   + L+ L L  N ++       +    L  L   +N +      D+   L     L 
Sbjct: 125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS-LQQATNLS 183

Query: 254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF--LRTYNIGFNKIVS 311
                N   G I     +    Q +          +  GL N     L            
Sbjct: 184 LNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
                    +        +  + L  + F      +   FS  L +L L   H+  ++P+
Sbjct: 243 ISPA-----VFEGLCEMSVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHL-SELPS 295

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGI-PNSLANLKKLNQI 430
            +  L +L  L LS N       I       L  L + GN     +    L NL+ L ++
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

Query: 431 DLSGNELT--GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
           DLS +++       +   N   L S++LS N    ++     +  P        +  +DL
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECP-------QLELLDL 407

Query: 489 SDNSLSGNLPNS-LKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSI-- 545
           +   L      S  +N   L+ L ++++        +   L  L+ L+L  N        
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

Query: 546 -PSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
             + LQ L  L  L L+F +L  +   +  F ++  
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSI--DQHAFTSLKM 501

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  227 bits (582), Expect = 1e-64
 Identities = 94/509 (18%), Positives = 165/509 (32%), Gaps = 72/509 (14%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITG 157
           ++   +N  L+  +P  + N      L  SFN L        S+L  L  LDL   +I  
Sbjct: 15  KTYNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP 217
            + +D  ++   L  L    N         +  +  + LS  + LK L      ++    
Sbjct: 72  -IHEDTFQSQHRLDTLVLTAN--------PLIFMAETALSGPKALKHLFFIQTGISSIDF 122

Query: 218 STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQI 277
             ++N  +L  L L SN +                         +            +++
Sbjct: 123 IPLHNQKTLESLYLGSNHI-------------------------SSIKLPKGFPTEKLKV 157

Query: 278 IRMTHNLLEGTLPPGLGNLPFLRTY--NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLAL 335
           +   +N +       + +L        N+  N I                +S     L  
Sbjct: 158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG--------IEPGAFDSAVFQSLNF 209

Query: 336 DGNQFEGKIPESIGNFS-NELSKLYLGGNHIYGKIPASIGRLRSLTL--LDLSYNSISGE 392
            G Q    I + + N +   L              PA    L  +++  ++L  +     
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 393 IPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLL 452
                    GLQ L L    +   +P+ L  L  L ++ LS N+      IS  NF SL 
Sbjct: 270 SSNTFHCFSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328

Query: 453 SIDLSNNRINGNIPKGILRPLP-------------------EEISRLENVVTIDLSDNSL 493
            + +  N     +  G L  L                     ++  L ++ +++LS N  
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 494 SGNLPNSLKNCKSLEELLMAYNQFSG-PIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL 552
                 + K C  LE L +A+ +       +    L  L+VL+LS + L  S       L
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

Query: 553 QALRSLNLTFNNLEGVVPSE-GIFRNMSN 580
            AL+ LNL  N+       +    + +  
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGR 477

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  161 bits (409), Expect = 1e-41
 Identities = 69/403 (17%), Positives = 126/403 (31%), Gaps = 85/403 (21%)

Query: 62  PGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL 121
           P V        V  +NL         S      S L+ + L    LS  LP  +  L  L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303

Query: 122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW 181
           + L +S N  +    ++ S    L  L +  N     +    L NL +L+ L+   + + 
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363

Query: 182 GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
            S   ++       L  L +L+ L+L+ N               L  L LA  +L  +  
Sbjct: 364 TSDCCNLQ------LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
                                        NL  ++++ ++H+LL+      L        
Sbjct: 418 ------------------------QSPFQNLHLLKVLNLSHSLLDI-SSEQL-------- 444

Query: 302 YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
                                       L +L L GN F     +   +           
Sbjct: 445 ----------------------FDGLPALQHLNLQGNHFPKGNIQKTNSLQT-------- 474

Query: 362 GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL 421
                         L  L +L LS+  +S         L+ +  + L+ N +      +L
Sbjct: 475 --------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL 520

Query: 422 ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN 464
           ++LK +  ++L+ N ++  +P          +I+L  N ++  
Sbjct: 521 SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  133 bits (337), Expect = 1e-32
 Identities = 42/240 (17%), Positives = 82/240 (34%), Gaps = 15/240 (6%)

Query: 349 GNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL 408
           G   N    L    N +      +  RL +LT LDL+   I             L  L L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKG 468
             N +      +L+  K L  +      ++    I   N ++L S+ L +N I+      
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK--- 145

Query: 469 ILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE--ELLMAYNQFSGPIPNIVA 526
                  +    E +  +D  +N++       + + +      L +  N  +G I     
Sbjct: 146 -----LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAF 199

Query: 527 ELKGLEVLDLSSNKLSGSIPSDLQN--LQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLK 584
           +    + L+    +    I   L+N  +Q+L        + E +  S  +F  +  + ++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI--SPAVFEGLCEMSVE 257

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  239 bits (613), Expect = 8e-69
 Identities = 101/525 (19%), Positives = 175/525 (33%), Gaps = 42/525 (8%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+LS   +E         L  L ++ L  N +    P     L  L  L      L    
Sbjct: 61  LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              I +L  LK L++  N I          NL +L  ++   N +       +  L    
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR--- 177

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL---- 251
               +    LD+++N +   +    +    L  L L  N     I       L  L    
Sbjct: 178 -ENPQVNLSLDMSLNPI-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235

Query: 252 --LDFIYCFNRFTGKIPGSLHNLTNIQI--IRMTHNLLEGTLPPGLGNLPFLRTYNIGFN 307
             L             P  +  L ++ I   R+T+             L  +   ++   
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 308 KIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYG 367
            I          ++  +        L++   Q +      +      L  L L  N    
Sbjct: 296 SI---------KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF----LKSLTLTMNKG-- 340

Query: 368 KIPASIGRLRSLTLLDLSYNSIS--GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK 425
            I      L SL+ LDLS N++S  G           L+ L L+ N     +  +   L+
Sbjct: 341 SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLE 399

Query: 426 KLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV 484
           +L  +D   + L      S F + + LL +D+S          GI   L        ++ 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLT-------SLN 451

Query: 485 TIDLSDNSLSGNLP-NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG 543
           T+ ++ NS   N   N   N  +L  L ++  Q       +   L  L++L++S N L  
Sbjct: 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511

Query: 544 SIPSDLQNLQALRSLNLTFNNLEGVVP-SEGIFRNMSNVHLKGNP 587
              S    L +L +L+ +FN +E      +   ++++  +L  N 
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  220 bits (562), Expect = 8e-62
 Identities = 99/516 (19%), Positives = 168/516 (32%), Gaps = 55/516 (10%)

Query: 95  SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANK 154
           S  ++I L  N L         N   L+ L++S   ++         L  L  L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 155 ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG 214
           I    +      L SL+ L   +  L       I          L  LK L++  N +  
Sbjct: 92  IQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQ--------LITLKKLNVAHNFIHS 142

Query: 215 -TVPSTIYNMTSLVHLRLASNQLGGEIPYD---VRDTLPNLLDFIYCFNRFTGKIPGSLH 270
             +P+   N+T+LVH+ L+ N +      D   +R+     L      N        +  
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 271 NLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGL--SFITSLTNS 327
            +  +  + +  N     +    L NL  L  + +   +     + E    S +  L + 
Sbjct: 203 GI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD- 260

Query: 328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR------------ 375
             ++   L                +N +S + L G  I   +                  
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLAN-VSAMSLAGVSI-KYLEDVPKHFKWQSLSIIRCQ 318

Query: 376 --------LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK-- 425
                   L  L  L L+ N  S  I  +   L  L  L L+ N +      S ++L   
Sbjct: 319 LKQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
            L  +DLS N     +  +F   + L  +D  ++ +           L         ++ 
Sbjct: 377 SLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE-------KLLY 428

Query: 486 IDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLSGS 544
           +D+S  +   +         SL  L MA N F      N+ A    L  LDLS  +L   
Sbjct: 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488

Query: 545 IPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
                  L  L+ LN++ NNL  +      +  + +
Sbjct: 489 SWGVFDTLHRLQLLNMSHNNLLFL--DSSHYNQLYS 522

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  202 bits (516), Expect = 1e-55
 Identities = 91/527 (17%), Positives = 167/527 (31%), Gaps = 84/527 (15%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSG-NLPREIGNLFRLRVLNISFNNLQG- 133
           L      L    S  IG L  L+ + + +N +    LP    NL  L  +++S+N +Q  
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 134 --------------------------ELPVNISKLTELKMLDLMANKITGRVTDDQLRNL 167
                                      +     +  +L  L L  N  +  +    L+NL
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKV--LDLTINRLAGTVPSTIYNMTS 225
             L V              ++    PS +  L ++ +    LT            + + +
Sbjct: 229 AGLHVHRLILGEFKDE--RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLAN 286

Query: 226 LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLL 285
           +  + LA   +                           K    +      Q + +    L
Sbjct: 287 VSAMSLAGVSI---------------------------KYLEDVPKHFKWQSLSIIRCQL 319

Query: 286 EGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP 345
           +   P    +LPFL++  +  NK          S          L+YL L  N       
Sbjct: 320 K-QFPTL--DLPFLKSLTLTMNKG---------SISFKKVALPSLSYLDLSRNALSFSGC 367

Query: 346 ESIGNFSN-ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIE-IGQLQGL 403
            S  +     L  L L  N     + A+   L  L  LD  ++++           L+ L
Sbjct: 368 CSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRIN 462
             L ++              L  LN + ++GN        + F N  +L  +DLS  ++ 
Sbjct: 427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
             I  G+   L         +  +++S N+L     +      SL  L  ++N+      
Sbjct: 487 Q-ISWGVFDTLH-------RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

Query: 523 NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVV 569
            +    K L   +L++N ++  I    + LQ ++       N+E + 
Sbjct: 539 ILQHFPKSLAFFNLTNNSVA-CICEHQKFLQWVKEQKQFLVNVEQMT 584

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  134 bits (338), Expect = 1e-32
 Identities = 55/244 (22%), Positives = 82/244 (33%), Gaps = 17/244 (6%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA 409
           +  +    + L  N +      S      L  LDLS   I          L  L  L L 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88

Query: 410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI 469
           GN I    P S + L  L  +     +L        G   +L  +++++N I+       
Sbjct: 89  GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC----- 143

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN----CKSLEELLMAYNQFSGPIPNIV 525
              LP   S L N+V +DLS N +     N L+      +    L M+ N          
Sbjct: 144 --KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 526 AELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGV----VPSEGIFRNMSN 580
             +K L  L L  N  S +I    LQNL  L    L     +      +    I   + +
Sbjct: 202 QGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 581 VHLK 584
           V + 
Sbjct: 261 VTID 264

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  201 bits (514), Expect = 1e-55
 Identities = 110/524 (20%), Positives = 192/524 (36%), Gaps = 57/524 (10%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKIT 156
            +++ L  N L         +   L+VL++S   +Q         L+ L  L L  N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 157 GRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA-GT 215
             +       L SLQ L   +         ++A+L    +  L+ LK L++  N +    
Sbjct: 90  -SLALGAFSGLSSLQKLVAVET--------NLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 216 VPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY----CFNRFTGKIPGSLHN 271
           +P    N+T+L HL L+SN++   I       L  +           N      PG+   
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199

Query: 272 LTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
           +  +  + + +N     +    +  L  L  + +   +  + G+ E     ++L    +L
Sbjct: 200 I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK-SALEGLCNL 257

Query: 331 NYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASI--------------- 373
                     +  + + I  F+    +S   L    I      S                
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 374 ----GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI--PGGIPNSLANLKKL 427
                +L+SL  L  + N        E+  L  L+ L L+ N +   G    S      L
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSL 375

Query: 428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID 487
             +DLS N +   +  +F   + L  +D  ++ +       +   L        N++ +D
Sbjct: 376 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR-------NLIYLD 427

Query: 488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI-PNIVAELKGLEVLDLSSNKLSGSIP 546
           +S                SLE L MA N F     P+I  EL+ L  LDLS  +L    P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487

Query: 547 SDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNP 587
           +   +L +L+ LN+  N L+ V   +GIF  +++   + L  NP
Sbjct: 488 TAFNSLSSLQVLNMASNQLKSV--PDGIFDRLTSLQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  201 bits (512), Expect = 2e-55
 Identities = 99/507 (19%), Positives = 181/507 (35%), Gaps = 50/507 (9%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+LS   ++        +LS L ++ L  N +          L  L+ L     NL    
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              I  L  LK L++  N I      +   NL +L+ L+   N         I ++  +D
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN--------KIQSIYCTD 168

Query: 196 LSRLENLKV----LDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           L  L  + +    LDL++N +   +    +    L  L L +N     +       L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 252 ------LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG---TLPPGLGNLPFLRTY 302
                 L               +L  L N+ I       L+     +      L  + ++
Sbjct: 228 EVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287

Query: 303 NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGG 362
           ++    I           +   + +    +L L   +F       + +    L +L    
Sbjct: 288 SLVSVTI---------ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS----LKRLTFTS 334

Query: 363 NHIYGKIPASIGRLRSLTLLDLSYNSIS--GEIPIEIGQLQGLQVLGLAGNEIPGGIPNS 420
           N   G   + +  L SL  LDLS N +S  G           L+ L L+ N +   + ++
Sbjct: 335 NKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSN 391

Query: 421 LANLKKLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR 479
              L++L  +D   + L      S F + ++L+ +D+S+         GI        + 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIF-------NG 443

Query: 480 LENVVTIDLSDNSLSGNL-PNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSS 538
           L ++  + ++ NS   N  P+     ++L  L ++  Q     P     L  L+VL+++S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503

Query: 539 NKLSGSIPSDLQNLQALRSLNLTFNNL 565
           N+L          L +L+ + L  N  
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 2e-35
 Identities = 84/445 (18%), Positives = 148/445 (33%), Gaps = 68/445 (15%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKL-SGNLPREIGNLFRLRVLNISFNNLQG- 133
           L      L    +  IG+L  L+ + + +N + S  LP    NL  L  L++S N +Q  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 134 --------------------------ELPVNISKLTELKMLDLMANKITGRVTDDQLRNL 167
                                      +     K   L  L L  N  +  V    ++ L
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGL 224

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG------TVPSTIY 221
             L+V       L      +  NL   D S LE L  L +   RLA        +     
Sbjct: 225 AGLEVHR-----LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 222 NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC-FNRFTGKIPGSLH---------- 270
            +T++    L S  +   +     +     L+ + C F +F      SL           
Sbjct: 280 CLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 271 ------NLTNIQIIRMTHNLLE--GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFIT 322
                 +L +++ + ++ N L   G           L+  ++ FN +++   +       
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----FL 393

Query: 323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLL 382
            L    HL+      +  +     S+      L  L +   H           L SL +L
Sbjct: 394 GLEQLEHLD---FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 383 DLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEI 441
            ++ NS       +I  +L+ L  L L+  ++    P +  +L  L  ++++ N+L    
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510

Query: 442 PISFGNFQSLLSIDLSNNRINGNIP 466
              F    SL  I L  N  + + P
Sbjct: 511 DGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  115 bits (289), Expect = 9e-27
 Identities = 59/324 (18%), Positives = 118/324 (36%), Gaps = 19/324 (5%)

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
            + + + ++ N L         + P L+  ++   +I +  D        +  + +HL+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG-------AYQSLSHLST 80

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSI-SG 391
           L L GN  +     +    S+ L KL     ++       IG L++L  L++++N I S 
Sbjct: 81  LILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 392 EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKL----NQIDLSGNELTGEIPISFGN 447
           ++P     L  L+ L L+ N+I       L  L ++      +DLS N +   I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 448 FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
              L  + L NN  + N+ K  ++ L   +     V+    ++ +L     ++L+   +L
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAG-LEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 508 EEL---LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP-SDLQNLQALRSLNLTFN 563
                 L   + +   I ++   L  +    L S  +      S     Q L  +N  F 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 564 NLEGVVPSEGIFRNMSNVHLKGNP 587
               +          ++       
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAF 341

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  112 bits (283), Expect = 5e-26
 Identities = 51/252 (20%), Positives = 87/252 (34%), Gaps = 20/252 (7%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
           IP+++         L L  N +      S      L +LDLS   I          L  L
Sbjct: 22  IPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL 78

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
             L L GN I      + + L  L ++      L        G+ ++L  +++++N I  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE----ELLMAYNQFSG 519
                    LPE  S L N+  +DLS N +       L+    +      L ++ N  + 
Sbjct: 139 F-------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191

Query: 520 PIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEG----VVPSEGI 574
             P    E++ L  L L +N  S ++    +Q L  L    L               +  
Sbjct: 192 IQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250

Query: 575 FRNMSNVHLKGN 586
              + N+ ++  
Sbjct: 251 LEGLCNLTIEEF 262

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
           +L  L  + + +             L  L VL ++ N+ Q     +I ++L  L  LDL 
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR 211
             ++  +++     +L SLQVLN   N L  S+P  I         RL +L+ + L  N 
Sbjct: 479 QCQLE-QLSPTAFNSLSSLQVLNMASNQL-KSVPDGI-------FDRLTSLQKIWLHTNP 529

Query: 212 LAGTVPSTIY 221
              + P   Y
Sbjct: 530 WDCSCPRIDY 539

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  187 bits (478), Expect = 3e-53
 Identities = 85/312 (27%), Positives = 130/312 (41%), Gaps = 75/312 (24%)

Query: 652 SYDELRRATGNFSHENLIGSGSFGSV----------------LHNERTGSWKSFIAECET 695
           S  EL+ A+ NFS++N++G G FG V                      G    F  E E 
Sbjct: 21  SLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEM 80

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------- 745
           +    HRNL++L   C +  ++ +    LVY +++NGS+   +    +++          
Sbjct: 81  ISMAVHRNLLRLRGFCMT-PTERL----LVYPYMANGSVASCLRERPESQPPLDWPKRQR 135

Query: 746 --LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
             L     L YLH+ C+  ++H D+K  NILLDEE  A VGDFGLA+ +  +        
Sbjct: 136 IALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKD------- 188

Query: 804 STHV---FMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGE---FN 842
            THV     G+IG++ PEY    + S   DV                   +         
Sbjct: 189 -THVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVM 247

Query: 843 IVKWVESNLPE-NVLQVLDPELRQLMTSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGR 900
           ++ WV+  L E  +  ++D +L+      E  Q IQ           V L CT  SP  R
Sbjct: 248 LLDWVKGLLKEKKLEALVDVDLQGNYKDEEVEQLIQ-----------VALLCTQSSPMER 296

Query: 901 IGIREALRRLKS 912
             + E +R L+ 
Sbjct: 297 PKMSEVVRMLEG 308

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  191 bits (487), Expect = 6e-53
 Identities = 100/478 (20%), Positives = 182/478 (38%), Gaps = 61/478 (12%)

Query: 91  IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
              L+      L    ++  +     +L ++  L      ++      +  L  L  ++ 
Sbjct: 20  DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINF 75

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
             N++T       L+NL  L  +    N +    P          L+ L NL  L L  N
Sbjct: 76  SNNQLTD---ITPLKNLTKLVDILMNNNQIADITP----------LANLTNLTGLTLFNN 122

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLH 270
           ++  T    + N+T+L  L L+SN +           L +L   +   N+ T   P  L 
Sbjct: 123 QI--TDIDPLKNLTNLNRLELSSNTISDISALS---GLTSL-QQLSFGNQVTDLKP--LA 174

Query: 271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
           NLT ++ + ++ N +       L  L  L +     N+I           IT L   T+L
Sbjct: 175 NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD---------ITPLGILTNL 223

Query: 331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS 390
           + L+L+GNQ +     ++ + +N L+ L L  N I    P  +  L  LT L L  N IS
Sbjct: 224 DELSLNGNQLKD--IGTLASLTN-LTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 278

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS 450
              P+    L  L  L L  N++     + ++NLK L  + L  N ++   P+S  +   
Sbjct: 279 NISPL--AGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISPVS--SLTK 332

Query: 451 LLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEEL 510
           L  +   NN+++              ++ L N+  +    N +S   P  L N   + +L
Sbjct: 333 LQRLFFYNNKVSD----------VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380

Query: 511 LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV 568
            +    ++    N  A +     +   +  L    P+ + +  +    ++T+N     
Sbjct: 381 GLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  177 bits (452), Expect = 3e-48
 Identities = 102/467 (21%), Positives = 178/467 (38%), Gaps = 62/467 (13%)

Query: 120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
            L    I+ +    ++    + L E     L    +T  V+   L  + +LQ    G   
Sbjct: 2   PLGSATITQDTPINQIF-TDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG--- 57

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGE 239
                   I ++    +  L NL  ++ + N+L  T  + + N+T LV + + +NQ+   
Sbjct: 58  --------IKSI--DGVEYLNNLTQINFSNNQL--TDITPLKNLTKLVDILMNNNQIADI 105

Query: 240 IPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFL 299
            P      L NL       N+ T   P  L NLTN+  + ++ N +       L  L  L
Sbjct: 106 TPLA---NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSL 158

Query: 300 RTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLY 359
           +  + G            ++ +  L N T L  L +  N+        +   +N L  L 
Sbjct: 159 QQLSFGNQ----------VTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTN-LESLI 205

Query: 360 LGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPN 419
              N I    P  +G L +L  L L+ N +       +  L  L  L LA N+I   +  
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI-SNLAP 260

Query: 420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR 479
            L+ L KL ++ L  N+++   P++     +L +++L+ N++               IS 
Sbjct: 261 -LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLED----------ISPISN 307

Query: 480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
           L+N+  + L  N++S   P  + +   L+ L    N+ S      +A L  +  L    N
Sbjct: 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHN 363

Query: 540 KLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
           ++S   P  L NL  +  L L                N+S  +   N
Sbjct: 364 QISDLTP--LANLTRITQLGLNDQAWTN--APVNYKANVSIPNTVKN 406

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  153 bits (389), Expect = 5e-40
 Identities = 96/427 (22%), Positives = 161/427 (37%), Gaps = 58/427 (13%)

Query: 89  PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKML 148
             + NL+ L  I + NN+++      + NL  L  L +  N +       +  LT L  L
Sbjct: 84  TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD--IDPLKNLTNLNRL 139

Query: 149 DLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLT 208
           +L +N I+       L  L SLQ L+FG  +                L+ L  L+ LD++
Sbjct: 140 ELSSNTISD---ISALSGLTSLQQLSFGNQVT-----------DLKPLANLTTLERLDIS 185

Query: 209 INRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGS 268
            N++  +  S +  +T+L  L   +NQ+    P      L NL +     N+      G+
Sbjct: 186 SNKV--SDISVLAKLTNLESLIATNNQISDITPLG---ILTNLDELSLNGNQLKD--IGT 238

Query: 269 LHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGL---------- 318
           L +LTN+  + + +N +       L  L  L    +G N+I +     GL          
Sbjct: 239 LASLTNLTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 296

Query: 319 ---SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR 375
                I+ ++N  +L YL L  N      P  + + +  L +L+   N +     +S+  
Sbjct: 297 NQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK-LQRLFFYNNKV--SDVSSLAN 351

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           L ++  L   +N IS   P+    L  +  LGL          N  AN+   N +     
Sbjct: 352 LTNINWLSAGHNQISDLTPL--ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG 409

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
            L    P +  +  S    D++ N  +            E        VTI     + SG
Sbjct: 410 ALI--APATISDGGSYTEPDITWNLPSY---------TNEVSYTFSQPVTIGKGTTTFSG 458

Query: 496 NLPNSLK 502
            +   LK
Sbjct: 459 TVTQPLK 465

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  197 bits (503), Expect = 1e-52
 Identities = 106/530 (20%), Positives = 192/530 (36%), Gaps = 52/530 (9%)

Query: 90  HIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLD 149
             G ++F R        L+  +P+    L     L +SFN ++     +   L +L++L+
Sbjct: 4   FDGRIAFYR-----FCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 150 LMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTI 209
           L +      +  +  RNL +L++L+ G +         I  L P     L +L  L L  
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSS--------KIYFLHPDAFQGLFHLFELRLYF 106

Query: 210 NRLAGTV--PSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPG 267
             L+  V       N+ +L  L L+ NQ+     +     L +L    +  N+       
Sbjct: 107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH 166

Query: 268 SLHNLT--NIQIIRMTHNLLEGTLPPGLGNLP------FLRTYNIGFNKIVSSGDDEGLS 319
            L  L    +    +  N L   +    G          L   ++  N           +
Sbjct: 167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226

Query: 320 FIT-----SLTNSTHLNYLALDGNQFEGKIPESIGNFSNE-LSKLYLGGNHIYGKIPASI 373
            I+     SL  + H+       +  +     +    +   +  L L    ++       
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286

Query: 374 GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS 433
             L+ L +L+L+YN I+         L  LQVL L+ N +     ++   L K+  IDL 
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346

Query: 434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT-------I 486
            N +      +F   + L ++DL +N +        +  +    ++L  +         I
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLI 406

Query: 487 DLSDNSLSGNLPNS-LKNCKSLEELLMAYNQFSG-PIPNIVAELKGLEVLDLSSNKLSGS 544
            LS+N L        L     L+ L++  N+FS        +E   LE L L  N L  +
Sbjct: 407 HLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 545 IPSDL-----QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNV---HLKGN 586
             ++L     + L  L+ L L  N L  +    G+F +++ +    L  N
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSL--PPGVFSHLTALRGLSLNSN 514

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  166 bits (421), Expect = 2e-42
 Identities = 74/412 (17%), Positives = 141/412 (34%), Gaps = 44/412 (10%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P  L+     + L L+ N +     S+   +  L  L L S      I  +    LPNL
Sbjct: 19  VPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG--LGNLPFLRTYNIGFNKI 309
                  ++     P +   L ++  +R+    L   +       NL  L   ++  N+I
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN-ELSKLYLGGNHIYGK 368
            S      L    S      L  +    NQ        +       LS   L  N +Y +
Sbjct: 136 RS------LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189

Query: 369 IPASIG------RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLA 422
           +    G      R   L +LD+S N  + +I             G   N I      SL 
Sbjct: 190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT------------GNFSNAISKSQAFSLI 237

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQ--SLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
               +       + +      +F      S+  +DLS+  +  ++   +   L       
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLK------ 290

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
            ++  ++L+ N ++     +     +L+ L ++YN       +    L  +  +DL  N 
Sbjct: 291 -DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349

Query: 541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQ 592
           ++       + L+ L++L+L  N L     +     ++ ++ L GN  + L 
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT----TIHFIPSIPDIFLSGNKLVTLP 397

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  152 bits (385), Expect = 5e-38
 Identities = 89/536 (16%), Positives = 174/536 (32%), Gaps = 83/536 (15%)

Query: 87  ISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLF--RLRVLNISFNNLQGELPVNISKLTE 144
           + P  G L+ L+SI   +N++      E+  L    L   +++ N+L   + V+  K   
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199

Query: 145 ------LKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSR 198
                 L++LD+  N  T  +T +    +   Q  +                     L  
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS---------------------LIL 238

Query: 199 LENLKVLDLTINRLAGTVPSTIYNM--TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY 256
             ++       + +     +T   +  +S+ HL L+   +          +L        
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV---------FSLN------- 282

Query: 257 CFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDE 316
                          L +++++ + +N +          L  L+  N+ +N +       
Sbjct: 283 ---------SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS- 332

Query: 317 GLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRL 376
                 +      + Y+ L  N       ++       L  L L  N +      +I  +
Sbjct: 333 ------NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNAL-----TTIHFI 380

Query: 377 RSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE 436
            S+  + LS N +   +P        + +       +   I   L  +  L  + L+ N 
Sbjct: 381 PSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQNR 437

Query: 437 LTG-EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
            +      +     SL  + L  N +       +   + E +S L+    + L+ N L+ 
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ---VLYLNHNYLNS 494

Query: 496 NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
             P    +  +L  L +  N+ +    N +     LE+LD+S N+L    P    +L   
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLS-- 550

Query: 556 RSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLGCENPRS-HGSRLIILSI 610
             L++T N           F N  N            + C  P S  G  L  LS 
Sbjct: 551 -VLDITHNKFICECELST-FINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLST 604

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  191 bits (488), Expect = 2e-52
 Identities = 92/515 (17%), Positives = 186/515 (36%), Gaps = 47/515 (9%)

Query: 91  IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
           +   + L+ + L++++++        +L  L  L++S N+L          L+ LK L+L
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
           M N            NL +LQ L  G    +  I          D + L +L  L++   
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR-------RIDFAGLTSLNELEIKAL 158

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL--LDFIYC------FNRFT 262
            L      ++ ++  + HL L  ++    +     D L ++  L+          F+   
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 263 GKIPGSLHNLTNIQIIRMTHNLLEG--TLPPGLGNLPFLRTYNIGFNKI--VSSGDDEGL 318
                S       +   +T         L   +  L  +   +   N +   +  + + +
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV 277

Query: 319 SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR-LR 377
           S +  +  +  +  L +        +          + ++ +  + ++  +P S  + L+
Sbjct: 278 SELGKV-ETVTIRRLHIPQFYLFYDLSTVYSLLEK-VKRITVENSKVF-LVPCSFSQHLK 334

Query: 378 SLTLLDLSYNSISGEI---PIEIGQLQGLQVLGLAGNEIP--GGIPNSLANLKKLNQIDL 432
           SL  LDLS N +  E        G    LQ L L+ N +         L  LK L  +D+
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394

Query: 433 SGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
           S N     +P S    + +  ++LS+  I   +   I +           +  +D+S+N+
Sbjct: 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ----------TLEVLDVSNNN 442

Query: 493 LSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL 552
           L  +    L     L+EL ++ N+    +P+       L V+ +S N+L          L
Sbjct: 443 LD-SFSLFLPR---LQELYISRNKLKT-LPDASL-FPVLLVMKISRNQLKSVPDGIFDRL 496

Query: 553 QALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
            +L+ + L  N  +   P         N + +   
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 531

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  186 bits (473), Expect = 2e-50
 Identities = 87/517 (16%), Positives = 182/517 (35%), Gaps = 52/517 (10%)

Query: 92  GNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
           G  + ++S+ L  NK++     ++     L+VL +  + +   +  +    L  L+ LDL
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDL 81

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLT-I 209
             N ++  ++      L SL+ LN   N    ++         S    L NL+ L +  +
Sbjct: 82  SDNHLS-SLSSSWFGPLSSLKYLNLMGNPY-QTLGV------TSLFPNLTNLQTLRIGNV 133

Query: 210 NRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSL 269
              +         +TSL  L + +  L          ++ ++       +     +    
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSL-RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 270 HNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTH 329
             L++++ + +    L       L              +     D+     +  L     
Sbjct: 193 DILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILE 252

Query: 330 LNYLALDGNQFEGKI---PESIGNFSN-------ELSKLYLGGNHIYGKIPASIGRLRSL 379
           L+ +  D     G     P      S         + +L++   +++  +      L  +
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 380 TLLDLSYNSISGEIPIEIGQ-LQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGN 435
             + +  + +   +P    Q L+ L+ L L+ N   E              L  + LS N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 436 ELT--GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL 493
            L    +        ++L S+D+S N            P+P+     E +  ++LS   +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTF---------HPMPDSCQWPEKMRFLNLSSTGI 422

Query: 494 SGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ 553
              +   +   ++LE L ++ N       +    L  L+ L +S NKL  ++P       
Sbjct: 423 R-VVKTCI--PQTLEVLDVSNNNLD----SFSLFLPRLQELYISRNKLK-TLPDAS-LFP 473

Query: 554 ALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNP 587
            L  + ++ N L+ V   +GIF  +++   + L  NP
Sbjct: 474 VLLVMKISRNQLKSV--PDGIFDRLTSLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  178 bits (454), Expect = 7e-48
 Identities = 93/499 (18%), Positives = 196/499 (39%), Gaps = 41/499 (8%)

Query: 102 LQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTD 161
            ++   + ++P  +     ++ L++SFN +      ++     L++L L +++I   +  
Sbjct: 12  GRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEG 67

Query: 162 DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG-TVPSTI 220
           D   +L SL+ L+   N         +++L  S    L +LK L+L  N      V S  
Sbjct: 68  DAFYSLGSLEHLDLSDN--------HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 221 YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRM 280
            N+T+L  LR+ + +   EI       L +L +              SL ++ +I  + +
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 281 THNLLEGTLPPGLGNLPFLRTYNIGFNKI----VSSGDDEGLSFITSLTNSTHLNYLALD 336
             +     L      L  +R   +    +     S    + +S                 
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 337 GNQFEGKIPESIGNFSNELSKLYLGG----NHIYGKIPASIGRLRSLTL--LDLSYNSIS 390
            N+    +   +     E     L G    N     + + +G++ ++T+  L +    + 
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF 299

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEI---PISFGN 447
            ++      L+ ++ + +  +++     +   +LK L  +DLS N +  E        G 
Sbjct: 300 YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359

Query: 448 FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
           + SL ++ LS N +        ++   E +  L+N+ ++D+S N+    +P+S +  + +
Sbjct: 360 WPSLQTLVLSQNHLR------SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM 412

Query: 508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG 567
             L ++          I    + LEVLD+S+N L  S    L  LQ    L ++ N L+ 
Sbjct: 413 RFLNLSSTGIRVVKTCI---PQTLEVLDVSNNNLD-SFSLFLPRLQ---ELYISRNKLK- 464

Query: 568 VVPSEGIFRNMSNVHLKGN 586
            +P   +F  +  + +  N
Sbjct: 465 TLPDASLFPVLLVMKISRN 483

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 81.7 bits (202), Expect = 4e-16
 Identities = 48/242 (19%), Positives = 97/242 (40%), Gaps = 27/242 (11%)

Query: 75  GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIG-NLFRLRVLNISFNNLQG 133
            L++  F L   +S     L  ++ I ++N+K+   +P     +L  L  L++S N +  
Sbjct: 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE 348

Query: 134 ELPVN---ISKLTELKMLDLMANKITG-RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIA 189
           E   N         L+ L L  N +   + T + L  L++L  L+  +N           
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF--------- 399

Query: 190 NLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP 249
           + +P      E ++ L+L+   +   V + I    +L  L +++N L           LP
Sbjct: 400 HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNL-DSFSLF----LP 451

Query: 250 NLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNK 308
            L +     N+    +P +      + +++++ N L+ ++P G    L  L+   +  N 
Sbjct: 452 RLQELYISRNKLK-TLPDAS-LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTNP 508

Query: 309 IV 310
             
Sbjct: 509 WD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.1 bits (172), Expect = 1e-12
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 450 SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE 509
           +    D  +     +IP G+             + ++DLS N ++      L+ C +L+ 
Sbjct: 6   ASGVCDGRSRSFT-SIPSGLTA----------AMKSLDLSFNKITYIGHGDLRACANLQV 54

Query: 510 LLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVV 569
           L++  ++ +    +    L  LE LDLS N LS    S    L +L+ LNL  N  +  +
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TL 113

Query: 570 PSEGIFRNMSN 580
               +F N++N
Sbjct: 114 GVTSLFPNLTN 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  177 bits (452), Expect = 2e-49
 Identities = 81/384 (21%), Positives = 141/384 (36%), Gaps = 44/384 (11%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           ++P  I  + P   + L       L    +  T   T   + S+  L +A  ++      
Sbjct: 7   TLPAPINQIFP--DADLAEGIRAVLQKASV--TDVVTQEELESITKLVVAGEKVASIQGI 62

Query: 243 DVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTY 302
           +    L NL       N+ T   P  L NL  +  + +  N +  T    L NL  LR  
Sbjct: 63  E---YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLREL 115

Query: 303 NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGG 362
            +  + I        +S + +LT    +  L L  N         + N +  L+ L +  
Sbjct: 116 YLNEDNI------SDISPLANLTK---MYSLNLGANHNL-SDLSPLSNMTG-LNYLTVTE 164

Query: 363 NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLA 422
           + +    P  I  L  L  L L+YN I    P+    L  L       N+I    P  +A
Sbjct: 165 SKVKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDITP--VA 218

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN 482
           N+ +LN + +  N++T   P    N   L  +++  N+I+              +  L  
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD----------INAVKDLTK 266

Query: 483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS 542
           +  +++  N +S    + L N   L  L +  NQ       ++  L  L  L LS N ++
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 543 GSIPSDLQNLQALRSLNLTFNNLE 566
              P  L +L  + S +     ++
Sbjct: 325 DIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  166 bits (422), Expect = 2e-45
 Identities = 83/422 (19%), Positives = 160/422 (37%), Gaps = 77/422 (18%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
              L      +    P   + L E     L    +T  VT      L S+  L      +
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKV 56

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
             SI           +  L NL+ L+L  N++  T  S + N+  L +L + +N++    
Sbjct: 57  -ASIQG---------IEYLTNLEYLNLNGNQI--TDISPLSNLVKLTNLYIGTNKI---- 100

Query: 241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLR 300
                                      +L NLTN++ + +  + +       L NL  + 
Sbjct: 101 -----------------------TDISALQNLTNLRELYLNEDNISD--ISPLANLTKMY 135

Query: 301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL 360
           + N+G N  +S         ++ L+N T LNYL +  ++ +   P  I N ++ L  L L
Sbjct: 136 SLNLGANHNLSD--------LSPLSNMTGLNYLTVTESKVKDVTP--IANLTD-LYSLSL 184

Query: 361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNS 420
             N I    P  +  L SL       N I+   P+    +  L  L +  N+I     + 
Sbjct: 185 NYNQIEDISP--LASLTSLHYFTAYVNQITDITPV--ANMTRLNSLKIGNNKITD--LSP 238

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
           LANL +L  +++  N+++     +  +   L  +++ +N+I+              ++ L
Sbjct: 239 LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD----------ISVLNNL 286

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
             + ++ L++N L       +    +L  L ++ N  +   P  +A L  ++  D ++  
Sbjct: 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344

Query: 541 LS 542
           + 
Sbjct: 345 IK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  163 bits (414), Expect = 2e-44
 Identities = 82/371 (22%), Positives = 144/371 (38%), Gaps = 43/371 (11%)

Query: 91  IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
             +L+      LQ   ++  +      L  +  L ++   +   +   I  LT L+ L+L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNL 73

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
             N+IT       L NL  L  L  G N +  +   ++ NL         NL+ L L  +
Sbjct: 74  NGNQITDI---SPLSNLVKLTNLYIGTNKI--TDISALQNL--------TNLRELYLNED 120

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLH 270
            +  +  S + N+T +  L L +N    ++       +  L       ++     P  + 
Sbjct: 121 NI--SDISPLANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IA 174

Query: 271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
           NLT++  + + +N +E      L +L  L  +    N+I           IT + N T L
Sbjct: 175 NLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD---------ITPVANMTRL 223

Query: 331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS 390
           N L +  N+        + N S  L+ L +G N I      ++  L  L +L++  N IS
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQ-LTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQIS 278

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS 450
                 +  L  L  L L  N++       +  L  L  + LS N +T   P++  +   
Sbjct: 279 D--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLA--SLSK 334

Query: 451 LLSIDLSNNRI 461
           + S D +N  I
Sbjct: 335 MDSADFANQVI 345

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  175 bits (447), Expect = 4e-49
 Identities = 77/311 (24%), Positives = 124/311 (39%), Gaps = 66/311 (21%)

Query: 650 KISYDELRRATGNFSHENLIGSGSFGSV---------------LHNERTGSWKSFIAECE 694
           ++   +L  AT NF H+ LIG G FG V                  E +   + F  E E
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIE 87

Query: 695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
           TL   RH +LV LI  C   +   M    L+Y+++ NG+L   ++G              
Sbjct: 88  TLSFCRHPHLVSLIGFCD--ERNEM---ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRL 142

Query: 746 ---LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
              +     L YLH      ++H D+K  NILLDE    K+ DFG+++   E   +Q+ +
Sbjct: 143 EICIGAARGLHYLHTRA---IIHRDVKSINILLDENFVPKITDFGISKKGTE--LDQTHL 197

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESF-AGEFNIVKW 846
            ST V  G++GY+ PEY +  R +   DV                  +S      N+ +W
Sbjct: 198 -STVV-KGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEW 255

Query: 847 VESNLPE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIRE 905
              +     + Q++DP L   +     +            G   + C   S   R  + +
Sbjct: 256 AVESHNNGQLEQIVDPNLADKIRPESLRK----------FGDTAVKCLALSSEDRPSMGD 305

Query: 906 ALRRLKSSQEI 916
            L +L+ +  +
Sbjct: 306 VLWKLEYALRL 316

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  165 bits (421), Expect = 1e-45
 Identities = 66/313 (21%), Positives = 112/313 (35%), Gaps = 77/313 (24%)

Query: 652 SYDELRRATGNFSHE------NLIGSGSFGSV----------------LHNERTGS--WK 687
           S+ EL+  T NF         N +G G FG V                   + T     +
Sbjct: 16  SFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQ 75

Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-- 745
            F  E + +   +H NLV+L+   S  D    +   LVY ++ NGSL D +         
Sbjct: 76  QFDQEIKVMAKCQHENLVELLGFSSDGD----DLC-LVYVYMPNGSLLDRLSCLDGTPPL 130

Query: 746 ---------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
                        + +++LH +     +H D+K  NILLDE  TAK+ DFGLAR   +  
Sbjct: 131 SWHMRCKIAQGAANGINFLHENH---HIHRDIKSANILLDEAFTAKISDFGLARASEK-- 185

Query: 797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEF 841
               ++ ++ + +G+  Y+ PE   G   +   D+                  E      
Sbjct: 186 -FAQTVMTSRI-VGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEH-REPQ 241

Query: 842 NIVKWVESNLPE--NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGG 899
            ++   E    E   +   +D ++    +++                 V   C  E    
Sbjct: 242 LLLDIKEEIEDEEKTIEDYIDKKMNDADSTSVEAMYS-----------VASQCLHEKKNK 290

Query: 900 RIGIREALRRLKS 912
           R  I++  + L+ 
Sbjct: 291 RPDIKKVQQLLQE 303

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  167 bits (426), Expect = 6e-45
 Identities = 97/501 (19%), Positives = 183/501 (36%), Gaps = 96/501 (19%)

Query: 87  ISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELK 146
           I+P   + +FL+     ++ L+  +P E  N+        +++  +   P    +  E+ 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 147 MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD 206
           +  L                 R    L      L  S+P               +L+ L 
Sbjct: 62  VSRLRDCL------------DRQAHELELNNLGL-SSLPELPP-----------HLESLV 97

Query: 207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
            + N L   +P    ++ SL+        L           LP LL+++   N    K+P
Sbjct: 98  ASCNSLT-ELPELPQSLKSLLVDNNNLKAL---------SDLPPLLEYLGVSNNQLEKLP 147

Query: 267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTN 326
             L N + ++II + +N L+  LP    +L F+     G N+         L  +  L N
Sbjct: 148 -ELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQ---------LEELPELQN 193

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
              L  +  D N  + K+P+   +    L  +  G N +  +    +  L  LT +    
Sbjct: 194 LPFLTAIYADNNSLK-KLPDLPLS----LESIVAGNNIL--EELPELQNLPFLTTIYADN 246

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           N +   +P     L+ L V      +    +P    +L  L+  +   + L+   P    
Sbjct: 247 NLLK-TLPDLPPSLEALNVRDNYLTD----LPELPQSLTFLDVSENIFSGLSELPP---- 297

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
              +L  ++ S+N I           L +    LE    +++S+N L   LP        
Sbjct: 298 ---NLYYLNASSNEIRS---------LCDLPPSLE---ELNVSNNKLI-ELPALPPR--- 338

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
           LE L+ ++N  +  +P      + L+ L +  N L    P   ++++     +L  N+  
Sbjct: 339 LERLIASFNHLAE-VP---ELPQNLKQLHVEYNPLR-EFPDIPESVE-----DLRMNSHL 388

Query: 567 GVVPSEGIFRNMSNVHLKGNP 587
             VP     +N+  +H++ NP
Sbjct: 389 AEVPEL--PQNLKQLHVETNP 407

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  164 bits (418), Expect = 6e-44
 Identities = 90/493 (18%), Positives = 171/493 (34%), Gaps = 99/493 (20%)

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNL-------------FRLRVLNISFNNLQ 132
            +     N+          ++   N P   G                +   L ++   L 
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 133 GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLI 192
             LP     L     L    N +T     +  ++L+SL V N     L    P       
Sbjct: 85  -SLPELPPHLES---LVASCNSLT--ELPELPQSLKSLLVDNNNLKALSDLPP------- 131

Query: 193 PSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLL 252
                    L+ L ++ N+L   +P  + N + L  + + +N L  ++P    D  P+L 
Sbjct: 132 --------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL-KKLP----DLPPSLE 176

Query: 253 DFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS 312
                 N+   ++P  L NL  +  I   +N L+  LP    +L  +     G N     
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLESI---VAGNNI---- 226

Query: 313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPAS 372
                L  +  L N   L  +  D N  +  +P+   +    L  L +  N++   +P  
Sbjct: 227 -----LEELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDNYL-TDLPEL 275

Query: 373 IGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDL 432
              L  L + +  ++ +S   P        L  L  + NEI   + +   +L++LN   +
Sbjct: 276 PQSLTFLDVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSLEELN---V 324

Query: 433 SGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
           S N+L  E+P      + L     S N +           +PE    L+    + +  N 
Sbjct: 325 SNNKLI-ELPALPPRLERL---IASFNHLAE---------VPELPQNLK---QLHVEYNP 368

Query: 493 LSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL 552
           L    P+  ++ + L        + +  +  +    + L+ L + +N L    P   +++
Sbjct: 369 LR-EFPDIPESVEDL--------RMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESV 418

Query: 553 QALRSLNLTFNNL 565
           + LR  +    + 
Sbjct: 419 EDLRMNSERVVDP 431

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  130 bits (329), Expect = 3e-32
 Identities = 72/419 (17%), Positives = 133/419 (31%), Gaps = 93/419 (22%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPR---------------EIGNLFR 120
           L  S   L   +     +L  L         LS   P                E+ N   
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSF 154

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
           L+++++  N+L+ +LP     L  +       N++       +L+NL  L  +    N L
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE---ELPELQNLPFLTAIYADNNSL 207

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
              +P    +L           + +    N L       + N+  L  +   +N L   +
Sbjct: 208 -KKLPDLPLSL-----------ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TL 252

Query: 241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLR 300
           P    D  P+L       N  T  +P    +LT + +     + L   LPP L  L    
Sbjct: 253 P----DLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLYYL---- 302

Query: 301 TYNIGFNKIVSSGDDEGLSFITSLTNS-THLNYLALDGNQFEGKIPESIGNFSNELSKLY 359
             N   N+I             SL +    L  L +  N+   ++P         L +L 
Sbjct: 303 --NASSNEI------------RSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLI 343

Query: 360 LGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQ----------------GL 403
              NH+  ++P     L+ L    + YN +  E P     ++                 L
Sbjct: 344 ASFNHL-AEVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNL 398

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
           + L +  N +    P+   +++ L    ++   +      +      L      ++  +
Sbjct: 399 KQLHVETNPLRE-FPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  156 bits (397), Expect = 2e-42
 Identities = 56/323 (17%), Positives = 108/323 (33%), Gaps = 37/323 (11%)

Query: 268 SLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS 327
             H+ +  + +    +         L         +                      NS
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADR-----------NRWHSAWRQANS 55

Query: 328 THLNYLALDGNQFEGKIPESIGNFSNE-LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
            +       G   +    + + + +      L L    +  + P    RL  L  + +  
Sbjct: 56  NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDA 113

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
             +  E+P  + Q  GL+ L LA N +   +P S+A+L +L ++ +       E+P    
Sbjct: 114 AGLM-ELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 447 NF---------QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNL 497
           +           +L S+ L             +R LP  I+ L+N+ ++ + ++ LS  L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTG---------IRSLPASIANLQNLKSLKIRNSPLSA-L 221

Query: 498 PNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRS 557
             ++ +   LEEL +         P I      L+ L L       ++P D+  L  L  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEK 281

Query: 558 LNLTFNNLEGVVPSEGIFRNMSN 580
           L+L        +PS      +  
Sbjct: 282 LDLRGCVNLSRLPSL--IAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  155 bits (394), Expect = 6e-42
 Identities = 57/373 (15%), Positives = 108/373 (28%), Gaps = 52/373 (13%)

Query: 109 GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLR 168
           G+      +      L    +         +S+       D        R       N  
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-----QANSN 56

Query: 169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVH 228
           + Q+       L  +    + +              L+L    L    P   + ++ L H
Sbjct: 57  NPQIETRTGRAL-KATADLLEDA------TQPGRVALELRSVPLP-QFPDQAFRLSHLQH 108

Query: 229 LRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT 288
           + + +  L                           ++P ++     ++ + +  N L   
Sbjct: 109 MTIDAAGL--------------------------MELPDTMQQFAGLETLTLARNPLR-A 141

Query: 289 LPPGLGNLPFLRTYNI-GFNKIV----SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGK 343
           LP  + +L  LR  +I    ++          +       L N   L  L L+       
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVN---LQSLRLEWTGIR-S 197

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
           +P SI N  N L  L +  + +   +  +I  L  L  LDL   +     P   G    L
Sbjct: 198 LPASIANLQN-LKSLKIRNSPL-SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
           + L L        +P  +  L +L ++DL G      +P       +   I +  +    
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA- 314

Query: 464 NIPKGILRPLPEE 476
            + +      P E
Sbjct: 315 QLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (364), Expect = 6e-38
 Identities = 61/347 (17%), Positives = 113/347 (32%), Gaps = 38/347 (10%)

Query: 220 IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIR 279
            ++ +   +L    +         +           Y  +R          N  N QI  
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQ-----WQRHYNADRNRWHSAWRQANSNNPQIET 62

Query: 280 MTHNLLEGTLPPGLGNL--PFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDG 337
            T   L+      L +   P      +    +          F       +HL ++ +D 
Sbjct: 63  RTGRALK-ATADLLEDATQPGRVALELRSVPLPQ--------FPDQAFRLSHLQHMTIDA 113

Query: 338 NQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI 397
                ++P+++  F+  L  L L  N +   +PASI  L  L  L +       E+P  +
Sbjct: 114 AGLM-ELPDTMQQFAG-LETLTLARNPL-RALPASIASLNRLRELSIRACPELTELPEPL 170

Query: 398 GQ---------LQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNF 448
                      L  LQ L L    I   +P S+ANL+ L  + +  + L+  +  +  + 
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHL 228

Query: 449 QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE 508
             L  +DL             LR  P        +  + L D S    LP  +     LE
Sbjct: 229 PKLEELDLRGCTA--------LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLE 280

Query: 509 ELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
           +L +        +P+++A+L    ++ +  +  +           A 
Sbjct: 281 KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVARPAE 327

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  135 bits (343), Expect = 3e-35
 Identities = 53/359 (14%), Positives = 101/359 (28%), Gaps = 59/359 (16%)

Query: 89  PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKML 148
            H  + S   ++  Q +         +    R    + +  +               ++ 
Sbjct: 6   HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIE 61

Query: 149 DLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLT 208
                 +       +         L      L    P     L         +L+ + + 
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPL-PQFPDQAFRL--------SHLQHMTID 112

Query: 209 INRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGS 268
              L   +P T+     L  L LA N L                            +P S
Sbjct: 113 AAGLM-ELPDTMQQFAGLETLTLARNPLR--------------------------ALPAS 145

Query: 269 LHNLTNIQIIRMTHNLLEGTLPPGLGNLPF---------LRTYNIGFNKIVSSGDDEGLS 319
           + +L  ++ + +        LP  L +            L++  + +  I S        
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-------- 197

Query: 320 FITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSL 379
              S+ N  +L  L +  +     +  +I +    L +L L G       P   G    L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPK-LEELDLRGCTALRNYPPIFGGRAPL 255

Query: 380 TLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT 438
             L L   S    +P++I +L  L+ L L G      +P+ +A L     I +  +   
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  118 bits (299), Expect = 2e-29
 Identities = 52/316 (16%), Positives = 102/316 (32%), Gaps = 88/316 (27%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L L S  L          LS L+ + +    L   LP  +     L  L ++ N L+  L
Sbjct: 86  LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL-IPS 194
           P +I+ L  L+ L + A                           L   +P  +A+     
Sbjct: 143 PASIASLNRLRELSIRAC------------------------PEL-TELPEPLASTDASG 177

Query: 195 DLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF 254
           +   L NL+ L L    +  ++P++I N+ +L  L++ ++ L                  
Sbjct: 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL------------------ 218

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
                     +  ++H+L  ++ + +         PP  G    L+   +          
Sbjct: 219 --------SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--------- 261

Query: 315 DEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG 374
                                D +     +P  I   +  L KL L G     ++P+ I 
Sbjct: 262 ---------------------DCSNLL-TLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIA 298

Query: 375 RLRSLTLLDLSYNSIS 390
           +L +  ++ +  +  +
Sbjct: 299 QLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 12/118 (10%), Positives = 23/118 (19%), Gaps = 22/118 (18%)

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI----- 524
           +               +    ++      + L   +            +    N      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 525 ----------------VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
                            A   G   L+L S  L    P     L  L+ + +    L 
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  160 bits (407), Expect = 3e-42
 Identities = 60/457 (13%), Positives = 131/457 (28%), Gaps = 39/457 (8%)

Query: 111 LPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL 170
           +     N  R ++  ++ ++L+  L         +K LDL  N ++ +++   L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLR 230
           ++LN   N+L+             DL  L  L+ LDL  N +       +    S+  L 
Sbjct: 61  ELLNLSSNVLYE----------TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLH 105

Query: 231 LASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLP 290
            A+N +   +            +     N+ T          + +Q + +  N ++    
Sbjct: 106 AANNNI-SRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 291 PGL-GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIG 349
             L  +   L   N+ +N I           +        L  L L  N+    +     
Sbjct: 162 AELAASSDTLEHLNLQYNFIYD---------VKGQVVFAKLKTLDLSSNKLA-FMGPEFQ 211

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA 409
           + +  ++ + L  N +   I  ++   ++L   DL  N       +     +  +V  +A
Sbjct: 212 SAAG-VTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVA 268

Query: 410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI 469
              +      +                      +       L+++    + +  +     
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHALL-SGQGSE 324

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK 529
              L  E         ID         +       ++   L          + N      
Sbjct: 325 TERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHA 384

Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
            L+     +      +    +    L+ L       E
Sbjct: 385 ELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  150 bits (381), Expect = 7e-39
 Identities = 65/480 (13%), Positives = 151/480 (31%), Gaps = 50/480 (10%)

Query: 70  GNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFN 129
           GNR     ++   L+  ++    +   ++ + L  N LS     ++    +L +LN+S N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 130 NLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIA 189
            L  E   ++  L+ L+ LDL  N +       +L    S++ L+   N +   +  S  
Sbjct: 69  VLY-ETL-DLESLSTLRTLDLNNNYVQ------ELLVGPSIETLHAANNNI-SRVSCSR- 118

Query: 190 NLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP 249
                     +  K + L  N++           + + +L L  N++      ++  +  
Sbjct: 119 ---------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 250 NLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI 309
            L      +N     + G +     ++ + ++ N L   + P   +   +   ++  NK+
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI 369
           V            +L  S +L +  L GN F          FS       +    +    
Sbjct: 227 V--------LIEKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLT 276

Query: 370 PASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI-------PGGIPNSLA 422
             +       TL             +       L  L    + +          +     
Sbjct: 277 GQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN 482
           N  +  +ID    +    I       Q+ ++++     ++       +       + L+ 
Sbjct: 334 NQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD-----EQVSNGRRAHAELDG 388

Query: 483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS 542
            +   +    L           + L  ++  Y +    +     +   +   D+  +K +
Sbjct: 389 TLQQAVGQIELQHATEE-QSPLQLLRAIVKRYEEMY--VEQQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  141 bits (357), Expect = 8e-36
 Identities = 66/424 (15%), Positives = 129/424 (30%), Gaps = 71/424 (16%)

Query: 162 DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY 221
           +  +N    ++     +        S+   + S      N+K LDL+ N L+    + + 
Sbjct: 4   EIKQNGNRYKIEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 222 NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMT 281
             T L  L L+SN L                                L +L+ ++ + + 
Sbjct: 56  PFTKLELLNLSSNVLYE---------------------------TLDLESLSTLRTLDLN 88

Query: 282 HNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFE 341
           +N ++      L   P + T +   N I             S +       + L  N+  
Sbjct: 89  NNYVQE-----LLVGPSIETLHAANNNISR----------VSCSRGQGKKNIYLANNKIT 133

Query: 342 GKIPESIGNFSNELSKLYLGGNHIYG-KIPASIGRLRSLTLLDLSYNSISGEIPIEIGQL 400
                  G  S  +  L L  N I             +L  L+L YN I  ++  ++   
Sbjct: 134 MLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 401 QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNR 460
             L+ L L+ N++   +     +   +  I L  N+L   I  +    Q+L   DL  N 
Sbjct: 191 AKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 461 INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
            +          L +  S+ + V T+     ++      + + C                
Sbjct: 249 FHCG-------TLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

Query: 521 IPNIVAELKGLEVLDLSSNKLSGS----IPSDLQNLQALRSLNLTFNNLEGVVPSEGIFR 576
                  L  L+  + +     GS    +  + +N    R ++        V   + +  
Sbjct: 300 PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV--IDQVTL 357

Query: 577 NMSN 580
               
Sbjct: 358 RKQA 361

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  137 bits (347), Expect = 1e-34
 Identities = 57/269 (21%), Positives = 104/269 (38%), Gaps = 23/269 (8%)

Query: 326 NSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLS 385
           N        +  +  +  +     +  N + +L L GN +     A +     L LL+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 386 YNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISF 445
            N +     +++  L  L+ L L  N +       L     +  +  + N ++    +S 
Sbjct: 67  SNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSC 116

Query: 446 GNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG-NLPNSLKNC 504
              Q   +I L+NN+I   +          +      V  +DL  N +   N      + 
Sbjct: 117 SRGQGKKNIYLANNKIT-MLR-------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN 564
            +LE L + YN     +   V     L+ LDLSSNKL+  +  + Q+   +  ++L  N 
Sbjct: 169 DTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 565 LEGVVPSEGIFRNMSNVHLKGNPKLCLQL 593
           L  +  +    +N+ +  L+GN   C  L
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (334), Expect = 8e-33
 Identities = 49/293 (16%), Positives = 100/293 (34%), Gaps = 29/293 (9%)

Query: 294 GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN 353
            N    +   +  + +  +             ++ ++  L L GN         +  F+ 
Sbjct: 7   QNGNRYKIEKVTDSSLKQALAS-------LRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI 413
            L  L L  N +Y      +  L +L  LDL+ N +      E+     ++ L  A N I
Sbjct: 60  -LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI 111

Query: 414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL 473
                +     K +    L+ N++T    +  G    +  +DL  N I+           
Sbjct: 112 SRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NF 161

Query: 474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
            E  +  + +  ++L  N +  ++   +     L+ L ++ N+ +  +        G+  
Sbjct: 162 AELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218

Query: 534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
           + L +NKL   I   L+  Q L   +L  N        +   +N     +   
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 27/131 (20%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLE 532
           + E            ++D+SL   L +  ++  +++EL ++ N  S      +A    LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 533 VLDLSSNKLSGSIP-----------------SDLQNLQALRSLNLTFNNLEGVVPSEGIF 575
           +L+LSSN L  ++                   +L    ++ +L+   NN+  V  S    
Sbjct: 62  LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV--SCSRG 119

Query: 576 RNMSNVHLKGN 586
           +   N++L  N
Sbjct: 120 QGKKNIYLANN 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  157 bits (400), Expect = 4e-42
 Identities = 63/398 (15%), Positives = 135/398 (33%), Gaps = 62/398 (15%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           I S+L        + + +             + +   +   ++ +           LP  
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM---------RKLP-- 61

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIV 310
                            L +   ++++ +    +E  +          ++   +GFN I 
Sbjct: 62  --------------AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP 370
                          N   L  L L+ N     +P  I + + +L+ L +  N++  +I 
Sbjct: 107 YLPPH-------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIE 157

Query: 371 ASIGR-LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
               +   SL  L LS N ++    +++  +  L    ++ N +     ++LA    + +
Sbjct: 158 DDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEE 209

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           +D S N +     +       L  + L +N +  +            +     +V +DLS
Sbjct: 210 LDASHNSINV---VRGPVNVELTILKLQHNNLT-DTA---------WLLNYPGLVEVDLS 256

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL 549
            N L   + +     + LE L ++ N+    +      +  L+VLDLS N L   +  + 
Sbjct: 257 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314

Query: 550 QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
                L +L L  N++  +         + N+ L  N 
Sbjct: 315 PQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHND 350

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  150 bits (380), Expect = 2e-39
 Identities = 73/436 (16%), Positives = 152/436 (34%), Gaps = 77/436 (17%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
           +++     +         L+  + +  +N+ +   LP  +  +  ++ +LN++   ++ E
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 83

Query: 135 LPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIP 193
           +     +    ++ L +  N I   +     +N+  L VL   +N L  S+P  I     
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRGI----- 136

Query: 194 SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD 253
                   L  L ++ N L      T    TSL +L+L+SN+L   +       +P+L  
Sbjct: 137 --FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLFH 190

Query: 254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSG 313
               +N  +     +L     ++ +  +HN +   +   +     L    +  N +    
Sbjct: 191 ANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD-- 240

Query: 314 DDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI 373
                     L N   L  + L  N+ E KI      F                      
Sbjct: 241 -------TAWLLNYPGLVEVDLSYNELE-KIMYHP--FVK-------------------- 270

Query: 374 GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS 433
             ++ L  L +S N +   + +    +  L+VL L+ N +   +  +     +L  + L 
Sbjct: 271 --MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLD 326

Query: 434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL 493
            N +     +      +L ++ LS+N  + N  + + R          NV    + D   
Sbjct: 327 HNSIV---TLKLSTHHTLKNLTLSHNDWDCNSLRALFR----------NVARPAVDDADQ 373

Query: 494 SGNLPNSLKN---CKS 506
              +   L++   CK 
Sbjct: 374 HCKIDYQLEHGLCCKE 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  155 bits (393), Expect = 1e-39
 Identities = 86/498 (17%), Positives = 179/498 (35%), Gaps = 48/498 (9%)

Query: 75  GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQG 133
            +++     +         L+  + +  +N+ +   LP  +  +  ++ +LN++   ++ 
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE- 88

Query: 134 ELPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLI 192
           E+     +    ++ L +  N I   +     +N+  L VL   +N L  S+P  I    
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-SSLPRGI---- 142

Query: 193 PSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLL 252
                    L  L ++ N L      T    TSL +L+L+SN+L   +       +P+L 
Sbjct: 143 ---FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD---LSLIPSLF 195

Query: 253 DFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS 312
                +N  +     +L     ++ +  +HN +   +   +     L    +  N +   
Sbjct: 196 HANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD- 246

Query: 313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPAS 372
                      L N   L  + L  N+ E KI          L +LY+  N +   +   
Sbjct: 247 --------TAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLY 296

Query: 373 IGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDL 432
              + +L +LDLS+N +   +     Q   L+ L L  N I     ++   LK L    L
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TL 352

Query: 433 SGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL--PEEISRLENVVTIDLSD 490
           S N+       +   F+++    + +   +  I   +   L   E      + +   ++ 
Sbjct: 353 SHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

Query: 491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS--- 547
            S+   +  +   C + + +    +            L+G E L+   N+L   +     
Sbjct: 411 TSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTN 470

Query: 548 -DLQNLQALRSLNLTFNN 564
             +Q  Q L+ L+   + 
Sbjct: 471 EQIQQEQLLQGLHAEIDT 488

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  153 bits (388), Expect = 3e-39
 Identities = 65/404 (16%), Positives = 137/404 (33%), Gaps = 62/404 (15%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           I S+L        + + +             + +   +   ++ +           LP  
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM---------RKLP-- 67

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIV 310
                            L +   ++++ +    +E  +          ++   +GFN I 
Sbjct: 68  --------------AALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP 370
                          N   L  L L+ N     +P  I + + +L+ L +  N++  +I 
Sbjct: 113 YLPPH-------VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-ERIE 163

Query: 371 ASIGR-LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
               +   SL  L LS N ++    +++  +  L    ++ N +     ++LA    + +
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHANVSYNLL-----STLAIPIAVEE 215

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           +D S N +     +       L  + L +N +  +            +     +V +DLS
Sbjct: 216 LDASHNSINV---VRGPVNVELTILKLQHNNLT-DTA---------WLLNYPGLVEVDLS 262

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL 549
            N L   + +     + LE L ++ N+    +      +  L+VLDLS N L   +  + 
Sbjct: 263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 320

Query: 550 QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL 593
                L +L L  N++  +         + N+ L  N   C  L
Sbjct: 321 PQFDRLENLYLDHNSIVTL--KLSTHHTLKNLTLSHNDWDCNSL 362

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 4e-11
 Identities = 24/159 (15%), Positives = 50/159 (31%), Gaps = 10/159 (6%)

Query: 432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN 491
              N    +      +          +  I+    + +     +    L N   +   ++
Sbjct: 5   QRYNVKPRQPEYKCIDSNLQYDCVFYDVHID-MQTQDVYFGFED--ITLNNQKIVTFKNS 61

Query: 492 SLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQ 550
           ++       L + + +E L +   Q         A    ++ L +  N +   +P    Q
Sbjct: 62  TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQ 120

Query: 551 NLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGN 586
           N+  L  L L  N+L  +    GIF N      + +  N
Sbjct: 121 NVPLLTVLVLERNDLSSL--PRGIFHNTPKLTTLSMSNN 157

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  152 bits (385), Expect = 4e-39
 Identities = 101/485 (20%), Positives = 186/485 (38%), Gaps = 46/485 (9%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
             +LNIS N +      +I  L++L++L +  N+I   +     +  + L+ L+   N L
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG-TVPSTIYNMTSLVHLRLASNQLGGE 239
                      I        NLK LDL+ N      +     NM+ L  L L++  L  +
Sbjct: 82  VK---------ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL-EK 129

Query: 240 IPYDVRDTLPNLLDFIYCFNRFTGKI-PGSLHNL--TNIQIIRMTHNLLEGTLPPGLGNL 296
                   L      +     +  K  P  L +    ++ I+  T+      L   +  +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 297 PFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF----- 351
             L   NI      +      LS +  L  +  L+ L L+  +        I        
Sbjct: 190 ANLELSNIKCVLEDNKCSYF-LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 352 --SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA 409
                +S + L G   +     S   L++L++  +  +               + +    
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 410 GNE---IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIP 466
            +    +    P+ ++    L   D S N LT  +  + G+   L ++ L  N++     
Sbjct: 309 VSGTRMVHMLCPSKISPFLHL---DFSNNLLTDTVFENCGHLTELETLILQMNQLK---- 361

Query: 467 KGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC-KSLEELLMAYNQFSGPIPNIV 525
              L  + E  ++++++  +D+S NS+S +      +  KSL  L M+ N  +  I    
Sbjct: 362 --ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-- 417

Query: 526 AELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VH 582
                ++VLDL SNK+  SIP  +  L+AL+ LN+  N L+ V   +GIF  +++   + 
Sbjct: 418 CLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIW 474

Query: 583 LKGNP 587
           L  NP
Sbjct: 475 LHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  141 bits (357), Expect = 1e-35
 Identities = 92/482 (19%), Positives = 193/482 (40%), Gaps = 37/482 (7%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
              + +  N +S     +I +L +LR+L IS N +Q  L +++     EL+ LDL  NK+
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT 215
              ++     NL   + L+   N    ++P         +   +  LK L L+   L  +
Sbjct: 82  VK-ISCHPTVNL---KHLDLSFNAF-DALPI------CKEFGNMSQLKFLGLSTTHLEKS 130

Query: 216 VPSTIYNMTSL-VHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPG-SLHNLT 273
               I ++    V L L       E P  ++D     L  ++  N+    I   S+  + 
Sbjct: 131 SVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA 190

Query: 274 NIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD--DEGLSFITSLTNSTHLN 331
           N+++  +   L +      L  L  L+T     N  +++ +        I  L   T + 
Sbjct: 191 NLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 332 YLALDGNQFEGKIPESIGNFSN----ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYN 387
           Y ++   + +G++     ++S      LS   +  +              ++ + + + +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310

Query: 388 SISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGN 447
                  +   ++     L  + N +   +  +  +L +L  + L  N+L  E+      
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEM 369

Query: 448 FQ---SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC 504
                SL  +D+S N ++ +  KG         S  ++++++++S N L+  +   L   
Sbjct: 370 TTQMKSLQQLDISQNSVSYDEKKGDC-------SWTKSLLSLNMSSNILTDTIFRCLP-- 420

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFN 563
             ++ L +  N+    IP  V +L+ L+ L+++SN+L  S+P      L +L+ + L  N
Sbjct: 421 PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

Query: 564 NL 565
             
Sbjct: 479 PW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  111 bits (279), Expect = 1e-25
 Identities = 76/432 (17%), Positives = 151/432 (34%), Gaps = 34/432 (7%)

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV 227
           +   +LN  +N         I+ L  SD+  L  L++L ++ NR+     S       L 
Sbjct: 21  QKTTILNISQN--------YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72

Query: 228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTG-KIPGSLHNLTNIQIIRMTHNLLE 286
           +L L+ N+L  +I         NL      FN F    I     N++ ++ + ++   LE
Sbjct: 73  YLDLSHNKL-VKISC---HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 287 GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE 346
            +    + +L   +   +         D EGL    + +               +  +  
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 347 SIGNFSNELSK-LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG--- 402
                 + +   L       +  I A +     L+ L L+    +    I I QL     
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT 248

Query: 403 -----LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLS 457
                +  + L G         S  +LK L+   +  +         +  F ++   + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308

Query: 458 NNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQF 517
            +     +            S++   + +D S+N L+  +  +  +   LE L++  NQ 
Sbjct: 309 VSG-TRMVHMLC-------PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 518 S--GPIPNIVAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGI 574
                I  +  ++K L+ LD+S N +S           ++L SLN++ N L   +    +
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCL 419

Query: 575 FRNMSNVHLKGN 586
              +  + L  N
Sbjct: 420 PPRIKVLDLHSN 431

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 8e-23
 Identities = 65/379 (17%), Positives = 141/379 (37%), Gaps = 23/379 (6%)

Query: 92  GNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL-QGELPVNISKLTELKM-LD 149
           GN+S L+ + L    L  +    I +L   +VL +      + E P  +       + + 
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 150 LMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD--LSRLENLKVLDL 207
              NK    + D  ++ + +L++ N  K +L  +      +++       +L NL + ++
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNI-KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNI 230

Query: 208 TINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC----FNRFTG 263
                +      +   T++ +  +++ +L G++ +   D     L  +       + F  
Sbjct: 231 ETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGF 290

Query: 264 KIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITS 323
                    +N+ I   T +            +      +   N +         +   +
Sbjct: 291 PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTD-------TVFEN 343

Query: 324 LTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHI-YGKIPASIGRLRSLT 380
             + T L  L L  NQ + ++ +     +    L +L +  N + Y +        +SL 
Sbjct: 344 CGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL 402

Query: 381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE 440
            L++S N ++  I   +     ++VL L  N+I   IP  +  L+ L +++++ N+L   
Sbjct: 403 SLNMSSNILTDTIFRCL--PPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQLKSV 459

Query: 441 IPISFGNFQSLLSIDLSNN 459
               F    SL  I L  N
Sbjct: 460 PDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 99.2 bits (247), Expect = 1e-21
 Identities = 57/400 (14%), Positives = 130/400 (32%), Gaps = 50/400 (12%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P DLS+     +L+++ N ++    S I +++ L  L ++ N++           L   
Sbjct: 15  VPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRI---------QYLD-- 61

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                                  ++ + ++HN L         NL  L   ++ FN   +
Sbjct: 62  --------------ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL---DLSFNAFDA 104

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
               +    ++ L       +L L     E      I + +     L LG  +   + P 
Sbjct: 105 LPICKEFGNMSQLK------FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

Query: 372 SIGRLR--SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
            +      SL ++  +       + + +  +  L++  +            L+ L KL  
Sbjct: 159 GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218

Query: 430 ------IDLSGNELTGEIPISFGNFQSLLSI---DLSNNRINGNIPKGILRPLPEEISRL 480
                 + L+  E T    I         ++    +SN ++ G       R      + L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ---LDFRDFDYSGTSL 275

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
           + +    +  +          +   ++       +          +++     LD S+N 
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL 335

Query: 541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
           L+ ++  +  +L  L +L L  N L+ +     +   M +
Sbjct: 336 LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.7 bits (181), Expect = 1e-13
 Identities = 48/283 (16%), Positives = 108/283 (38%), Gaps = 21/283 (7%)

Query: 33  LMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIG 92
            +S  +++      S L+  N  ++  ++  ++   +   V   ++S+  L+G +     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 93  NLSF-----LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
           + S      L   Q+ ++               + + N + +  +    +  SK++    
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 148 LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL 207
           LD   N +T     +   +L  L+ L    N L   +       I    +++++L+ LD+
Sbjct: 329 LDFSNNLLT-DTVFENCGHLTELETLILQMNQL-KELSK-----IAEMTTQMKSLQQLDI 381

Query: 208 TINRLAGTVPSTI-YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY-CFNRFTGKI 265
           + N ++            SL+ L ++SN L       +   LP  +  +    N+    I
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNIL----TDTIFRCLPPRIKVLDLHSNKIK-SI 436

Query: 266 PGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFN 307
           P  +  L  +Q + +  N L+ ++P G    L  L+   +  N
Sbjct: 437 PKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 3e-07
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 15/163 (9%)

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           +D S N L   +P      Q    +++S N I+  +          +I  L  +  + +S
Sbjct: 5   VDRSKNGLI-HVPK--DLSQKTTILNISQNYIS-ELW-------TSDILSLSKLRILIIS 53

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL-SGSIPSD 548
            N +     +  K  + LE L +++N+      +       L+ LDLS N   +  I  +
Sbjct: 54  HNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKE 110

Query: 549 LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL 591
             N+  L+ L L+  +LE          N+S V L        
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  145 bits (368), Expect = 1e-38
 Identities = 44/197 (22%), Positives = 75/197 (38%), Gaps = 34/197 (17%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETL 696
           +  + L   +       +   G FG V   +                 SW+    E  +L
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQ-NEYEVYSL 72

Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDIT 749
             ++H N+++ I +     S +++   L+  F   GSL D++     +          + 
Sbjct: 73  PGMKHENILQFIGAEKRGTSVDVDLW-LITAFHEKGSLSDFLKANVVSWNELCHIAETMA 131

Query: 750 SALDYLHND-------CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
             L YLH D        +  + H D+K  N+LL   +TA + DFGLA       +   S 
Sbjct: 132 RGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF----EAGKSA 187

Query: 803 SSTHVFMGSIGYVPPEY 819
             TH  +G+  Y+ PE 
Sbjct: 188 GDTHGQVGTRRYMAPEV 204

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  141 bits (357), Expect = 6e-37
 Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 28/224 (12%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSV----LHNE-------RTGSWKSFIAECE--TLR 697
            +  E      N     LIG G +G+V    L             + ++FI E     + 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVP 62

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITS 750
            + H N+ + I     + +       LV E+  NGSL  ++     +          +T 
Sbjct: 63  LMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTR 122

Query: 751 ALDYLHND------CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL--ERVDNQSSI 802
            L YLH +       +  + H DL   N+L+  + T  + DFGL+  L     V      
Sbjct: 123 GLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEED 182

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           ++    +G+I Y+ PE   G       +    +       ++ W
Sbjct: 183 NAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYW 226

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  138 bits (351), Expect = 2e-36
 Identities = 58/269 (21%), Positives = 104/269 (38%), Gaps = 23/269 (8%)

Query: 326 NSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLS 385
           N        +  +  +  +     +  N + +L L GN +     A +     L LL+LS
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 386 YNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISF 445
            N +  E   ++  L  L+ L L  N +       L     +  +  + N ++    +S 
Sbjct: 67  SNVLY-ETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR---VSC 116

Query: 446 GNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG-NLPNSLKNC 504
              Q   +I L+NN+I   +          +      V  +DL  N +   N      + 
Sbjct: 117 SRGQGKKNIYLANNKIT-MLR-------DLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN 564
            +LE L + YN     +   V     L+ LDLSSNKL+  +  + Q+   +  ++L  N 
Sbjct: 169 DTLEHLNLQYNFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225

Query: 565 LEGVVPSEGIFRNMSNVHLKGNPKLCLQL 593
           L  +  +    +N+ +  L+GN   C  L
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTL 254

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (340), Expect = 7e-35
 Identities = 49/292 (16%), Positives = 100/292 (34%), Gaps = 29/292 (9%)

Query: 295 NLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNE 354
           N    +   +  + +  +             ++ ++  L L GN         +  F+  
Sbjct: 8   NGNRYKIEKVTDSSLKQALAS-------LRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIP 414
           L  L L  N +Y      +  L +L  LDL+ N +      E+     ++ L  A N I 
Sbjct: 60  LELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 415 GGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLP 474
               +     K +    L+ N++T    +  G    +  +DL  N I+            
Sbjct: 113 RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFA 162

Query: 475 EEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL 534
           E  +  + +  ++L  N +  ++   +     L+ L ++ N+ +  +        G+  +
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219

Query: 535 DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
            L +NKL   I   L+  Q L   +L  N        +   +N     +   
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  134 bits (339), Expect = 9e-35
 Identities = 51/338 (15%), Positives = 110/338 (32%), Gaps = 37/338 (10%)

Query: 111 LPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL 170
           +     N  R ++  ++ ++L+  L         +K LDL  N ++ +++   L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLR 230
           ++LN   N+L               L  L  L+ LDL  N +       +    S+  L 
Sbjct: 61  ELLNLSSNVL-YETLD---------LESLSTLRTLDLNNNYV-----QELLVGPSIETLH 105

Query: 231 LASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLP 290
            A+N +   +            +     N+ T          + +Q + +  N ++ T+ 
Sbjct: 106 AANNNI-SRVS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVN 160

Query: 291 PG--LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESI 348
                 +   L   N+ +N I           +        L  L L  N+    +    
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD---------VKGQVVFAKLKTLDLSSNKLA-FMGPEF 210

Query: 349 GNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL 408
            + +  ++ + L  N +   I  ++   ++L   DL  N       +     +  +V  +
Sbjct: 211 QSAAG-VTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTV 267

Query: 409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           A   +   +         +  +   G     ++P  F 
Sbjct: 268 AKQTVK-KLTGQNEEECTVPTLGHYGAYCCEDLPAPFA 304

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  125 bits (317), Expect = 9e-32
 Identities = 61/382 (15%), Positives = 114/382 (29%), Gaps = 70/382 (18%)

Query: 162 DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY 221
           +  +N    ++     +        S+   + S      N+K LDL+ N L+    + + 
Sbjct: 4   EIKQNGNRYKIEKVTDS--------SLKQALASLRQSAWNVKELDLSGNPLSQISAADLA 55

Query: 222 NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMT 281
             T L  L L+SN L  E                             L +L+ ++ + + 
Sbjct: 56  PFTKLELLNLSSNVLY-ETL--------------------------DLESLSTLRTLDLN 88

Query: 282 HNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFE 341
           +N ++      L   P + T +   N I             S +       + L  N+  
Sbjct: 89  NNYVQE-----LLVGPSIETLHAANNNISRV----------SCSRGQGKKNIYLANNKIT 133

Query: 342 GKIPESIGNFSNELSKLYLGGNHIYG-KIPASIGRLRSLTLLDLSYNSISGEIPIEIGQL 400
                  G  S  +  L L  N I             +L  L+L YN I  ++  ++   
Sbjct: 134 MLRDLDEGCRSR-VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-VF 190

Query: 401 QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNR 460
             L+ L L+ N++   +     +   +  I L  N+L   I  +    Q+L   DL  N 
Sbjct: 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248

Query: 461 INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
            +          L +  S+ + V T+               + C                
Sbjct: 249 FHCG-------TLRDFFSKNQRVQTVAKQTVKKLTGQNE--EECTVPTLGHYGAYCCEDL 299

Query: 521 IPNIVAELKGLEVLDLSSNKLS 542
                       ++ L  +   
Sbjct: 300 -----PAPFADRLIALGHHHHH 316

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  109 bits (275), Expect = 2e-26
 Identities = 40/230 (17%), Positives = 84/230 (36%), Gaps = 19/230 (8%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
           I           +  ++ +S+   +         ++ L L+GN +       LA   KL 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI-----------LRPLPEEI 477
            ++LS N L  E      +  +L ++DL+NN +   +  G            +  +    
Sbjct: 62  LLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNISRVSCSR 118

Query: 478 SRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSG-PIPNIVAELKGLEVLDL 536
              +    I L++N ++            ++ L +  N+        + A    LE L+L
Sbjct: 119 --GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 537 SSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
             N +   +   +     L++L+L+ N L  + P       ++ + L+ N
Sbjct: 177 QYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN 224

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.9 bits (247), Expect = 1e-22
 Identities = 40/252 (15%), Positives = 81/252 (32%), Gaps = 25/252 (9%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+LS   L    +  +   + L  + L +N L      ++ +L  LR L+++ N +Q   
Sbjct: 39  LDLSGNPLSQISAADLAPFTKLELLNLSSNVLY-ETL-DLESLSTLRTLDLNNNYVQ--- 93

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              +     ++ L    N I    +       +  + +    N         I  L   D
Sbjct: 94  --ELLVGPSIETLHAANNNI----SRVSCSRGQGKKNIYLANN--------KITMLRDLD 139

Query: 196 LSRLENLKVLDLTINRLAG-TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF 254
                 ++ LDL +N +          +  +L HL L  N +  ++   V      L   
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV--VFAKLKTL 196

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
               N+    +     +   +  I + +N L   +   L     L  +++  N       
Sbjct: 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 315 DEGLSFITSLTN 326
            +  S    +  
Sbjct: 255 RDFFSKNQRVQT 266

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 52/277 (18%), Positives = 98/277 (35%), Gaps = 34/277 (12%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           LNLSS  L    +  + +LS LR++ L NN +      E+     +  L+ + NN+   +
Sbjct: 63  LNLSSNVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RV 114

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
             +       K + L  NKIT  + D        +Q L+   N +  ++           
Sbjct: 115 SCSR--GQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEI-DTVNF------AEL 164

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
            +  + L+ L+L  N +   V   +     L  L L+SN+L   +  + +     +    
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKL-AFMGPEFQS-AAGVTWIS 220

Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE-GTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
              N+    I  +L    N++   +  N    GTL         ++T      K ++  +
Sbjct: 221 LRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 315 DEGLSF----------ITSLTNSTHLNYLALDGNQFE 341
           +E  +              L        +AL  +   
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  141 bits (356), Expect = 1e-35
 Identities = 64/342 (18%), Positives = 133/342 (38%), Gaps = 29/342 (8%)

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
           + C  +    +P  +   T  +++ +  N ++        + P L    +  N + +   
Sbjct: 16  VLCHRKRFVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73

Query: 315 DEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI- 373
                   +  N  +L  L L  N+ +  IP  +    + L+KL +  N I   +   + 
Sbjct: 74  G-------AFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-VILLDYMF 124

Query: 374 GRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDL 432
             L +L  L++  N +   I       L  L+ L L    +      +L++L  L  + L
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183

Query: 433 SGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
               +      SF     L  +++S+      +    L  L        N+ ++ ++  +
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--------NLTSLSITHCN 235

Query: 493 LSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQN 551
           L+     ++++   L  L ++YN  S    +++ EL  L+ + L   +L+  +     + 
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRG 294

Query: 552 LQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNPKLC 590
           L  LR LN++ N L  +   E +F ++ N   + L  NP  C
Sbjct: 295 LNYLRVLNVSGNQLTTL--EESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  139 bits (352), Expect = 3e-35
 Identities = 72/399 (18%), Positives = 139/399 (34%), Gaps = 81/399 (20%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITG 157
           R++     +    +P  I      R+L++  N ++       +    L+ L+L  N ++ 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP 217
            V      NL +L+ L    N L   IP  +        + L NL  LD++ N++   + 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRL-KLIPLGV-------FTGLSNLTKLDISENKIVILLD 121

Query: 218 STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQI 277
               ++ +L  L +  N L   I                           +   L +++ 
Sbjct: 122 YMFQDLYNLKSLEVGDNDL-VYIS------------------------HRAFSGLNSLEQ 156

Query: 278 IRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD 336
           + +    L  ++P   L +L  L    +    I +  D        S      L  L + 
Sbjct: 157 LTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDY-------SFKRLYRLKVLEIS 208

Query: 337 GNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA-SIGRLRSLTLLDLSYNSISGEIPI 395
              +   +  +     N L+ L +   ++   +P  ++  L  L  L+LSYN IS  I  
Sbjct: 209 HWPYLDTMTPNCLYGLN-LTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS-TIE- 264

Query: 396 EIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID 455
                                  + L  L +L +I L G +L    P +F     L  ++
Sbjct: 265 ----------------------GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302

Query: 456 LSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           +S N++   + + +   +        N+ T+ L  N L+
Sbjct: 303 VSGNQLT-TLEESVFHSVG-------NLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (318), Expect = 8e-31
 Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 28/303 (9%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
           +   L  ++L  N +S   P    NLF LR L +  N L+  +P+ + + L+ L  LD+ 
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDIS 112

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR 211
            NKI   + D   ++L +L+ L  G N         +  +     S L +L+ L L    
Sbjct: 113 ENKIV-ILLDYMFQDLYNLKSLEVGDN--------DLVYISHRAFSGLNSLEQLTLEKCN 163

Query: 212 LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHN 271
           L       + ++  L+ LRL    +   I       L  L         +   +  +   
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222

Query: 272 LTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
             N+  + +TH  L   +P   + +L +LR  N+ +N I +            L     L
Sbjct: 223 GLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGS-------MLHELLRL 274

Query: 331 NYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYN 387
             + L G Q    +      F     L  L + GN +   +  S+   + +L  L L  N
Sbjct: 275 QEIQLVGGQLA-VVEP--YAFRGLNYLRVLNVSGNQL-TTLEESVFHSVGNLETLILDSN 330

Query: 388 SIS 390
            ++
Sbjct: 331 PLA 333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  134 bits (338), Expect = 1e-33
 Identities = 76/411 (18%), Positives = 144/411 (35%), Gaps = 53/411 (12%)

Query: 201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR 260
           ++  +DL++N +A    ++   +  L  L++     G  I  +    L +L+     +N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 261 FTGKIPGSLHNLTNIQIIRMTHNLL-EGTLPPGL-GNLPFLRTYNIGFNKIVSSGDDEGL 318
           F     G+ + L N++++ +T   L    L       L  L    +  N I        +
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK------I 144

Query: 319 SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRS 378
              +   N    + L L  N+ +  I E             L              RL S
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLL--------------RLSS 189

Query: 379 LTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQI-------- 430
           +TL D++   +  E      +   +  L L+GN     +     +     +I        
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 431 -----DLSGNELTGEIPISFGNFQ--SLLSIDLSNNRINGNIPKGILRPLPEEISRLENV 483
                             +F   +   + + DLS ++I   + K +            ++
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFT-------DL 301

Query: 484 VTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG 543
             + L+ N ++    N+      L +L ++ N        +   L  LEVLDLS N +  
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR- 360

Query: 544 SIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNPKLC 590
           ++       L  L+ L L  N L+ V   +GIF  +++   + L  NP  C
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNPWDC 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  131 bits (330), Expect = 2e-32
 Identities = 89/504 (17%), Positives = 159/504 (31%), Gaps = 108/504 (21%)

Query: 66  CNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLN 125
           C+  G         + GL     P +   + +  + L  N ++         L  L+ L 
Sbjct: 8   CSVIGYNA---ICINRGL--HQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLK 60

Query: 126 ISFNNLQGELPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSI 184
           +        +  N    L+ L +L L  N+   ++       L +L+VL   +  L G++
Sbjct: 61  VEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAV 119

Query: 185 PPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTI-YNMTSLVHLRLASNQLGGEIPYD 243
                         L +L++L L  N +    P++   NM     L L  N++       
Sbjct: 120 LSGNF------FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV------- 166

Query: 244 VRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYN 303
              ++            F GK    L  L++I +  M    L             + T +
Sbjct: 167 --KSICEED-----LLNFQGKHFTLLR-LSSITLQDMNEYWLGWEKCGNPFKNTSITTLD 218

Query: 304 IGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGN 363
           +  N    S               T +  L L  +   G                    N
Sbjct: 219 LSGNGFKESMAKR----FFDAIAGTKIQSLILSNSYNMGS-----SFGHTNFKDPD---N 266

Query: 364 HIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLAN 423
             +  + AS      +   DLS + I                       +   + +   +
Sbjct: 267 FTFKGLEAS-----GVKTCDLSKSKIF---------------------ALLKSVFSHFTD 300

Query: 424 LKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN 482
           L++L    L+ NE+  +I   +F     LL ++LS N + G+I   +          L+ 
Sbjct: 301 LEQL---TLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFE-------NLDK 348

Query: 483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS 542
           +  +DLS N +   L +                 F G        L  L+ L L +N+L 
Sbjct: 349 LEVLDLSYNHIR-ALGDQS---------------FLG--------LPNLKELALDTNQLK 384

Query: 543 GSIPSD-LQNLQALRSLNLTFNNL 565
            S+P      L +L+ + L  N  
Sbjct: 385 -SVPDGIFDRLTSLQKIWLHTNPW 407

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  130 bits (328), Expect = 3e-33
 Identities = 74/347 (21%), Positives = 130/347 (37%), Gaps = 62/347 (17%)

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIV 310
           L  + C +    K+P  L    +  ++ + +N +   +  G   NL  L T  +  NKI 
Sbjct: 33  LRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS 89

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP 370
                       +      L  L L  NQ + ++PE +      L +L +  N I  K+ 
Sbjct: 90  KISPG-------AFAPLVKLERLYLSKNQLK-ELPEKM--PKT-LQELRVHENEIT-KVR 137

Query: 371 ASI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
            S+   L  + +++L  N +     IE                       +   +KKL+ 
Sbjct: 138 KSVFNGLNQMIVVELGTNPLK-SSGIE---------------------NGAFQGMKKLSY 175

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           I ++   +T    I  G   SL  + L  N+I   +    L+ L        N+  + LS
Sbjct: 176 IRIADTNITT---IPQGLPPSLTELHLDGNKIT-KVDAASLKGLN-------NLAKLGLS 224

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD- 548
            NS+S     SL N   L EL +  N+    +P  +A+ K ++V+ L +N +S +I S+ 
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNIS-AIGSND 282

Query: 549 ------LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGN 586
                      +   ++L  N ++        FR +     V L   
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  119 bits (301), Expect = 1e-29
 Identities = 73/354 (20%), Positives = 128/354 (36%), Gaps = 70/354 (19%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
           LRV+  S   L+ ++P ++    +  +LDL  NKIT  + D   +NL++L  L    N  
Sbjct: 33  LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN-- 86

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
                  I+ + P   + L  L+ L L+ N+L   +P  +    +L  LR+  N++  ++
Sbjct: 87  ------KISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEIT-KV 136

Query: 241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLL-EGTLPPG-LGNLPF 298
                                        + L  + ++ +  N L    +  G    +  
Sbjct: 137 R------------------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSLTNS--THLNYLALDGNQFEGKIPESIGNFSN--E 354
           L    I    I            T++       L  L LDGN+   K+     +      
Sbjct: 173 LSYIRIADTNI------------TTIPQGLPPSLTELHLDGNKIT-KVDA--ASLKGLNN 217

Query: 355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIP 414
           L+KL L  N I      S+     L  L L+ N +  ++P  +   + +QV+ L  N I 
Sbjct: 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

Query: 415 G------GIPNSLANLKKLNQIDLSGNELT-GEI-PISFGNFQSLLSIDLSNNR 460
                    P         + + L  N +   EI P +F       ++ L N +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 6e-28
 Identities = 68/353 (19%), Positives = 123/353 (34%), Gaps = 72/353 (20%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P DL    +  +LDL  N++         N+ +L  L L +N++  +I           
Sbjct: 46  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KIS---------- 92

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                         PG+   L  ++ + ++ N L+  LP  +     L+   +  N+I  
Sbjct: 93  --------------PGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK 135

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQF-EGKIPESIGNFSN--ELSKLYLGGNHIYGK 368
                             +  + L  N      I    G F    +LS + +   +I   
Sbjct: 136 VRKS-------VFNGLNQMIVVELGTNPLKSSGIEN--GAFQGMKKLSYIRIADTNI-TT 185

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKL 427
           IP  +    SLT L L  N I+ ++       L  L  LGL+ N I      SLAN   L
Sbjct: 186 IPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID 487
            ++ L+ N+L  ++P    + + +  + L NN I+  I      P P   ++  +   + 
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCP-PGYNTKKASYSGVS 299

Query: 488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
           L  N +             ++             P+    +     + L + K
Sbjct: 300 LFSNPVQ---------YWEIQ-------------PSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  114 bits (288), Expect = 6e-28
 Identities = 69/333 (20%), Positives = 117/333 (35%), Gaps = 64/333 (19%)

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV 227
               +L+   N         I  +   D   L+NL  L L  N+++   P     +  L 
Sbjct: 52  PDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103

Query: 228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG 287
            L L+ NQL           LP  +                      +Q +R+  N +  
Sbjct: 104 RLYLSKNQL---------KELPEKM-------------------PKTLQELRVHENEIT- 134

Query: 288 TLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE 346
            +       L  +    +G N + SSG + G     +      L+Y+ +        IP+
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-----AFQGMKKLSYIRIADTNIT-TIPQ 188

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPA-SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV 405
             G   + L++L+L GN I  K+ A S+  L +L  L LS+NSIS      +     L+ 
Sbjct: 189 --GLPPS-LTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 244

Query: 406 LGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG------EIPISFGNFQSLLSIDLSNN 459
           L L  N++   +P  LA+ K +  + L  N ++         P       S   + L +N
Sbjct: 245 LHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 460 RIN-GNIPKGILRPLPEEISRLENVVTIDLSDN 491
            +    I     R +            + L + 
Sbjct: 304 PVQYWEIQPSTFRCVY-------VRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  107 bits (269), Expect = 2e-25
 Identities = 63/264 (23%), Positives = 103/264 (39%), Gaps = 26/264 (9%)

Query: 329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS 388
           HL  +       E K+P+ +     + + L L  N I          L++L  L L  N 
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 389 ISGEIPIEIGQ-LQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS 444
           IS +I       L  L+ L L+ N   E+P  +P +L  L       +  NE+T      
Sbjct: 88  IS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL------RVHENEITKVRKSV 140

Query: 445 FGNFQSLLSIDLSNNRI-NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN 503
           F     ++ ++L  N + +  I  G  + +         +  I ++D +++  +P  L  
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMK-------KLSYIRIADTNIT-TIPQGL-- 190

Query: 504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN 563
             SL EL +  N+ +      +  L  L  L LS N +S      L N   LR L+L  N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 564 NLEGVVPSEGIFRNMSNVHLKGNP 587
            L  V       + +  V+L  N 
Sbjct: 251 KLVKVPGGLADHKYIQVVYLHNNN 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.7 bits (249), Expect = 7e-23
 Identities = 71/355 (20%), Positives = 128/355 (36%), Gaps = 54/355 (15%)

Query: 48  PLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKL 107
            +    P    C  P   C      V     S  GLE  +   +        + LQNNK+
Sbjct: 14  EVPEIEPMGPVC--PFR-CQCHLRVV---QCSDLGLE-KVPKDLP--PDTALLDLQNNKI 64

Query: 108 SGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKITGRVTDDQLRN 166
           +     +  NL  L  L +  N +  ++     + L +L+ L L  N++   + +   + 
Sbjct: 65  TEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKT 122

Query: 167 LRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV--PSTIYNMT 224
           L+    L   +N +   +  S+        + L  + V++L  N L  +         M 
Sbjct: 123 LQE---LRVHENEI-TKVRKSV-------FNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPNL--LDFIYCFNRFTGKIP-GSLHNLTNIQIIRMT 281
            L ++R+A   +   IP   +   P+L  L      N+ T K+   SL  L N+  + ++
Sbjct: 172 KLSYIRIADTNI-TTIP---QGLPPSLTELHLDG--NKIT-KVDAASLKGLNNLAKLGLS 224

Query: 282 HNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQF 340
            N +   +  G L N P LR  ++  NK+V             L +  ++  + L  N  
Sbjct: 225 FNSIS-AVDNGSLANTPHLRELHLNNNKLV--------KVPGGLADHKYIQVVYLHNNNI 275

Query: 341 EGKIPES----IGNFSN--ELSKLYLGGNHI-YGKIPASI-GRLRSLTLLDLSYN 387
              I  +     G  +     S + L  N + Y +I  S    +     + L   
Sbjct: 276 S-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  133 bits (336), Expect = 1e-32
 Identities = 79/476 (16%), Positives = 172/476 (36%), Gaps = 29/476 (6%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
            +++ L  N +S     +I  L  LRVL +S N ++  L  ++     +L+ LD+  N++
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT 215
              ++      + SL+ L+   N  +  +P         +   L  L  L L+  +    
Sbjct: 113 QN-ISCC---PMASLRHLDLSFN-DFDVLPVC------KEFGNLTKLTFLGLSAAKFRQL 161

Query: 216 VPSTIYN-MTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR-FTGKIPGSLHNLT 273
               + +   S + L L S  + G     ++     +L  ++  N  F+ ++  S++ L 
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221

Query: 274 NIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYL 333
           ++Q+  +  N           +        +           +    +        + YL
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL 281

Query: 334 ALDGNQFEGKIPESIGNFSN----ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSI 389
            +       +I      +S      L   ++          A       + +  LS +  
Sbjct: 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341

Query: 390 SGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQ 449
                +          L    N     +    + LK+L  + L  N L           +
Sbjct: 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400

Query: 450 SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE 509
           ++ S++  +  +N ++            +  E+++ ++LS N L+G++   L     ++ 
Sbjct: 401 NMSSLETLDVSLN-SLNSHAYDRT---CAWAESILVLNLSSNMLTGSVFRCLP--PKVKV 454

Query: 510 LLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNN 564
           L +  N+    IP  V  L+ L+ L+++SN+L  S+P      L +L+ + L  N 
Sbjct: 455 LDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  128 bits (323), Expect = 4e-31
 Identities = 97/493 (19%), Positives = 192/493 (38%), Gaps = 58/493 (11%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
            + L++S N++      +IS L+EL++L L  N+I   +        + L+ L+   N L
Sbjct: 54  TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL 112

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY--NMTSLVHLRLASNQLGG 238
             +I              + +L+ LDL+ N     +P      N+T L  L L++ +   
Sbjct: 113 Q-NISC----------CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKF-R 159

Query: 239 EIPYDVRDTLPNLLDFIYCF-NRFTGKIPGSLH--NLTNIQIIRMTHNLLEGTLPPGLGN 295
           ++       L      +        G    SL   N T + ++   ++L    +   +  
Sbjct: 160 QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNA 219

Query: 296 LPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF--SN 353
           L  L+  NI  N          ++F++ LT    L  + L   +   K    +  F    
Sbjct: 220 LGHLQLSNIKLNDE---NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276

Query: 354 ELSKLYLGGNHIYGKIPASIGR-----LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL 408
            +  L +    I  +I           L+SL +  +                  + +  L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 409 AGNE---IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNI 465
           + ++   I    P S ++   L   + + N  T  +       + L ++ L  N      
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFL---NFTQNVFTDSVFQGCSTLKRLQTLILQRNG----- 388

Query: 466 PKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC-----KSLEELLMAYNQFSGP 520
               L+   +     +N+ +++  D SL+ +L +   +      +S+  L ++ N  +G 
Sbjct: 389 ----LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 521 IPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
           +   +     ++VLDL +N++  SIP D+ +LQAL+ LN+  N L+ V   +G+F  +++
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSV--PDGVFDRLTS 498

Query: 581 ---VHLKGNPKLC 590
              + L  NP  C
Sbjct: 499 LQYIWLHDNPWDC 511

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 89.2 bits (221), Expect = 2e-18
 Identities = 64/408 (15%), Positives = 128/408 (31%), Gaps = 51/408 (12%)

Query: 92  GNLSFLRSIQLQNNKL-SGNLPREIGNLFRLRVLNISFNNLQGELPVNISKL-TELKMLD 149
           GNL+ L  + L   K    +L           +L++   +++G    ++    T +  L 
Sbjct: 143 GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202

Query: 150 LMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTI 209
              N +     +  +  L  LQ+ N   N        +  + + +    L N+ +  +  
Sbjct: 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSEL-TRGPTLLNVTLQHIET 261

Query: 210 NRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY----CFNRFTGKI 265
                      +    + +L + +  +   I  +        L  +         F    
Sbjct: 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSK 321

Query: 266 PGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLT 325
                    + I  ++ +           +       N   N       D      ++L 
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFT----DSVFQGCSTLK 377

Query: 326 NSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLS 385
               L  L L  N  +    +      N                      + SL  LD+S
Sbjct: 378 R---LQTLILQRNGLK-NFFKVALMTKN----------------------MSSLETLDVS 411

Query: 386 YNSI-SGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSL-ANLKKLNQIDLSGNELTGEIPI 443
            NS+ S          + + VL L+ N + G +   L   +K L   DL  N +   IP 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIM-SIPK 467

Query: 444 SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN 491
              + Q+L  +++++N++  ++P G+   L        ++  I L DN
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLT-------SLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 83.4 bits (206), Expect = 1e-16
 Identities = 63/414 (15%), Positives = 133/414 (32%), Gaps = 52/414 (12%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P DL      K L L+ N ++      I  ++ L  LRL+ N++          +L   
Sbjct: 46  VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI---------RSLD-- 92

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIV 310
                                 +++ + ++HN L+  +    + +L  L   ++ FN   
Sbjct: 93  --------------FHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHL---DLSFNDFD 134

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP 370
                +    +T LT      +L L   +F       + +       L L   HI G   
Sbjct: 135 VLPVCKEFGNLTKLT------FLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGET 188

Query: 371 ASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK----- 425
            S+    + T+L L ++  S         +  L  L L+  ++       L         
Sbjct: 189 ESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR 247

Query: 426 --KLNQIDLSGNELTGEIPISFGNFQ---SLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
              L  + L   E T +  +    F     +  +++ N  I   I +          + L
Sbjct: 248 GPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR---EEFTYSETAL 304

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
           ++++   + +     +          +   +++ +                  L+ + N 
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV 364

Query: 541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQLG 594
            + S+      L+ L++L L  N L+       + +NMS++         L   
Sbjct: 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 52/293 (17%), Positives = 98/293 (33%), Gaps = 24/293 (8%)

Query: 26  INTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVIC---NNFGNRVIGLNLSSFG 82
           I  + E      + +S+ +    L          TW   +      +   V  LN+ +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 83  LEGTISPHIGN-----LSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPV 137
           +   I           L  L    ++N     +          + +  +S ++      V
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLS 197
                +    L+   N  T          L+ LQ L   +N L  +        +     
Sbjct: 348 CPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGL-KNFFK-----VALMTK 400

Query: 198 RLENLKVLDLTINRL-AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY 256
            + +L+ LD+++N L +     T     S++ L L+SN L       V   LP  +  + 
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML----TGSVFRCLPPKVKVLD 456

Query: 257 -CFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFN 307
              NR    IP  + +L  +Q + +  N L+ ++P G    L  L+   +  N
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  127 bits (321), Expect = 2e-32
 Identities = 49/248 (19%), Positives = 98/248 (39%), Gaps = 17/248 (6%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG---LQVL 406
              +  ++L L  N +         +L  LT L LS N +S           G   L+ L
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYL 83

Query: 407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNI 465
            L+ N +   + ++   L++L  +D   + L      S F + ++L+ +D+S+       
Sbjct: 84  DLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VA 141

Query: 466 PKGILRPLPEEISRLENVVTIDLSDNSLSGNL-PNSLKNCKSLEELLMAYNQFSGPIPNI 524
             GI   L        ++  + ++ NS   N  P+     ++L  L ++  Q     P  
Sbjct: 142 FNGIFNGLS-------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194

Query: 525 VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPS--EGIFRNMSNVH 582
              L  L+VL++S N          + L +L+ L+ + N++        +    +++ ++
Sbjct: 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 254

Query: 583 LKGNPKLC 590
           L  N   C
Sbjct: 255 LTQNDFAC 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 1e-24
 Identities = 56/306 (18%), Positives = 99/306 (32%), Gaps = 69/306 (22%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P+ +    +   L+L  N+L          +T L  L L+SN L               
Sbjct: 22  VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--------------- 64

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                    F G    S    T+++ + ++ N +  T+      L  L   +   + +  
Sbjct: 65  --------SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKI 369
                 +S  +   +  +L YL +            I  F+    L  L + GN      
Sbjct: 116 ------MSEFSVFLSLRNLIYLDISHTHTR-VAFNGI--FNGLSSLEVLKMAGNSFQENF 166

Query: 370 PASI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
              I   LR+LT LDLS   +  ++                        P +  +L  L 
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLE-QLS-----------------------PTAFNSLSSLQ 202

Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
            +++S N         +    SL  +D S N I     K  L+  P  ++ L      +L
Sbjct: 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFL------NL 255

Query: 489 SDNSLS 494
           + N  +
Sbjct: 256 TQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  104 bits (261), Expect = 1e-24
 Identities = 58/292 (19%), Positives = 98/292 (33%), Gaps = 49/292 (16%)

Query: 124 LNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGS 183
           +  +   L   +P  I   +    L+L +NK+   +       L  L  L+   N L   
Sbjct: 12  IRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL--- 64

Query: 184 IPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYD 243
              S             +LK LDL+ N +  T+ S    +  L HL    + L     + 
Sbjct: 65  ---SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 244 VRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYN 303
           V  +L NL+              G  + L+++++++M  N  +    P +          
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------- 170

Query: 304 IGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGN 363
                                T   +L +L L   Q E ++  +  N  + L  L +  N
Sbjct: 171 --------------------FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209

Query: 364 HIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG----LQVLGLAGN 411
           + +         L SL +LD S N I      +  +LQ     L  L L  N
Sbjct: 210 NFFSLDTFPYKCLNSLQVLDYSLNHIMT---SKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 95.5 bits (238), Expect = 1e-21
 Identities = 58/247 (23%), Positives = 99/247 (40%), Gaps = 19/247 (7%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL--QGELPVNISKLTELKMLDLMANK 154
              ++L++NKL          L +L  L++S N L  +G    +    T LK LDL  N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 155 ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG 214
           +   ++ +    L  L+ L+F  + L   +         S    L NL  LD++      
Sbjct: 90  VI-TMSSN-FLGLEQLEHLDFQHSNL-KQMSE------FSVFLSLRNLIYLDISHTHTRV 140

Query: 215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN 274
                   ++SL  L++A N        D+   L NL        +     P + ++L++
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 200

Query: 275 IQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYL 333
           +Q++ M+HN    +L       L  L+  +   N I++S   E   F +SL       +L
Sbjct: 201 LQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA------FL 253

Query: 334 ALDGNQF 340
            L  N F
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 39/193 (20%), Positives = 71/193 (36%), Gaps = 12/193 (6%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
             + L+ + L  N +   +      L +L  L+   +NL+     ++   L  L  LD+ 
Sbjct: 76  GTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR 211
                    +     L SL+VL    N    +  P I        + L NL  LDL+  +
Sbjct: 135 HTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-------FTELRNLTFLDLSQCQ 186

Query: 212 LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHN 271
           L    P+   +++SL  L ++ N     +       L +L    Y  N         L +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245

Query: 272 L-TNIQIIRMTHN 283
             +++  + +T N
Sbjct: 246 FPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 33/172 (19%), Positives = 61/172 (35%), Gaps = 19/172 (11%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN-GNIPKGIL 470
            +P GIP+S   L      +L  N+L       F     L  + LS+N ++         
Sbjct: 21  SVPTGIPSSATRL------ELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD 74

Query: 471 RPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSG-PIPNIVAELK 529
                      ++  +DLS N +   + ++    + LE L   ++        ++   L+
Sbjct: 75  FGTT-------SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 530 GLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
            L  LD+S         +     L +L  L +  N+ +       IF  + N
Sbjct: 127 NLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRN 176

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 39/183 (21%), Positives = 72/183 (39%), Gaps = 13/183 (7%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
           L+LS  G+  T+S +   L  L  +  Q++ L       +  +L  L  L+IS  + +  
Sbjct: 83  LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-V 140

Query: 135 LPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIP 193
               I + L+ L++L +  N        D    LR+L  L+  +  L   + P+      
Sbjct: 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTA----- 194

Query: 194 SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD 253
              + L +L+VL+++ N            + SL  L  + N +            P+ L 
Sbjct: 195 --FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHFPSSLA 251

Query: 254 FIY 256
           F+ 
Sbjct: 252 FLN 254

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  127 bits (321), Expect = 2e-32
 Identities = 64/266 (24%), Positives = 94/266 (35%), Gaps = 78/266 (29%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKS----------------FIAECE 694
           I Y E+         E ++G G+FG V        W++                FI E  
Sbjct: 5   IDYKEI-------EVEEVVGRGAFGVVCK----AKWRAKDVAIKQIESESERKAFIVELR 53

Query: 695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
            L  V H N+VKL  +C       +  + LV E+   GSL + +HG              
Sbjct: 54  QLSRVNHPNIVKLYGAC-------LNPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMS 106

Query: 746 --LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT-AKVGDFGLARFLLERVDNQSSI 802
             L  +  + YLH+     ++H DLKP N+LL    T  K+ DFG A  +          
Sbjct: 107 WCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI-----QTHMT 161

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDV---------------PTSESFAGEFNIVKWV 847
           ++     GS  ++ PE   G   S   DV               P  E     F I+  V
Sbjct: 162 NNK----GSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAV 217

Query: 848 ESNL----PENVLQVLDPELRQLMTS 869
            +       +N+       +  LMT 
Sbjct: 218 HNGTRPPLIKNL----PKPIESLMTR 239

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  132 bits (333), Expect = 4e-32
 Identities = 68/375 (18%), Positives = 123/375 (32%), Gaps = 85/375 (22%)

Query: 198 RLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC 257
                 VL++  + L  T+P  +     +  L +  N L          +LP        
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNL---------TSLPA------- 78

Query: 258 FNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEG 317
                            ++ + ++ N L  +LP     L  L  ++     + +      
Sbjct: 79  -------------LPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL----- 119

Query: 318 LSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR 377
               + L        L + GNQ    +P         L +L +  N +   +PA    L 
Sbjct: 120 ---PSGLCK------LWIFGNQLT-SLPVLPPG----LQELSVSDNQL-ASLPALPSELC 164

Query: 378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNEL 437
            L       N ++  +P+    LQ    L ++ N++   +P   + L KL       N L
Sbjct: 165 KL---WAYNNQLT-SLPMLPSGLQ---ELSVSDNQL-ASLPTLPSELYKL---WAYNNRL 213

Query: 438 TGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNL 497
           T  +P      + L    +S NR+           LP   S L+    + +S N L+ +L
Sbjct: 214 T-SLPALPSGLKEL---IVSGNRLTS---------LPVLPSELKE---LMVSGNRLT-SL 256

Query: 498 PNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRS 557
           P        L  L +  NQ +  +P  +  L     ++L  N LS      L+ + +   
Sbjct: 257 PMLPSG---LLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPG 312

Query: 558 LNLTFNNLEGVVPSE 572
            +      +    S 
Sbjct: 313 YSGPIIRFDMAGASA 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  131 bits (331), Expect = 7e-32
 Identities = 73/429 (17%), Positives = 136/429 (31%), Gaps = 77/429 (17%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFR--LRVLNISFNNLQGELPVNISKLTELKMLDLMANKI 155
           R+   + ++    + +++         VLN+  + L   LP  +     +  L +  N +
Sbjct: 17  RAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNL 73

Query: 156 TGRVTDDQL-RNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG 214
           T       L      L+ L    N L           +P     L  L +    +  L  
Sbjct: 74  T------SLPALPPELRTLEVSGNQL---------TSLPVLPPGLLELSIFSNPLTHL-- 116

Query: 215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN 274
             P+     + L  L +  NQL   +P       P L +     N+    +P     L  
Sbjct: 117 --PALP---SGLCKLWIFGNQLT-SLP----VLPPGLQELSVSDNQLA-SLPALPSELCK 165

Query: 275 IQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS-THLNYL 333
           +      +N L  +LP     L  L   ++  N++             SL    + L  L
Sbjct: 166 L---WAYNNQLT-SLPMLPSGLQEL---SVSDNQL------------ASLPTLPSELYKL 206

Query: 334 ALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEI 393
               N+    +P         L +L + GN +   +P     L+ L    +S N ++  +
Sbjct: 207 WAYNNRLT-SLPALPSG----LKELIVSGNRL-TSLPVLPSELKEL---MVSGNRLT-SL 256

Query: 394 PIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLS 453
           P+    L     L +  N++   +P SL +L     ++L GN L+     +    + + S
Sbjct: 257 PMLPSGLL---SLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS---ERTLQALREITS 309

Query: 454 IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP----NSLKNCKSLEE 509
               +  I            P E   L       L         P    +      + + 
Sbjct: 310 APGYSGPI--IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADA 367

Query: 510 LLMAYNQFS 518
             +  ++ S
Sbjct: 368 FSLFLDRLS 376

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  129 bits (326), Expect = 3e-31
 Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 51/281 (18%)

Query: 321 ITSLTNS--THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRS 378
           +T+L +    H+  L +  N     +P         L  L + GN +   +P     L  
Sbjct: 52  LTTLPDCLPAHITTLVIPDNNLT-SLPALPPE----LRTLEVSGNQLT-SLPVLPPGLLE 105

Query: 379 LTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT 438
           L++       +            GL  L + GN++   +P     L++L    +S N+L 
Sbjct: 106 LSIFSNPLTHLPALPS-------GLCKLWIFGNQL-TSLPVLPPGLQEL---SVSDNQLA 154

Query: 439 GEIPISFGNFQSLLSIDLSNNRINGNIPKGI------------LRPLPEEISRLENVVTI 486
             +P        L      NN++  ++P               L  LP   S L     +
Sbjct: 155 -SLPALPSELCKL---WAYNNQLT-SLPMLPSGLQELSVSDNQLASLPTLPSELYK---L 206

Query: 487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP 546
              +N L+ +LP        L+EL+++ N+ +  +P        L+ L +S N+L+ S+P
Sbjct: 207 WAYNNRLT-SLPALPSG---LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLP 257

Query: 547 SDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
                L    SL++  N L  +  S     + + V+L+GNP
Sbjct: 258 MLPSGLL---SLSVYRNQLTRLPESLIHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (301), Expect = 3e-28
 Identities = 70/414 (16%), Positives = 127/414 (30%), Gaps = 112/414 (27%)

Query: 67  NNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNI 126
           +     +  L +    L  ++      L   R++++  N+L+ +LP     L  L + + 
Sbjct: 57  DCLPAHITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSN 111

Query: 127 SFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPP 186
              +L           + L  L +  N++T                          S+P 
Sbjct: 112 PLTHLPAL-------PSGLCKLWIFGNQLT--------------------------SLPV 138

Query: 187 SIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRD 246
                          L+ L ++ N+LA ++P+     + L  L   +NQL          
Sbjct: 139 LP-----------PGLQELSVSDNQLA-SLPALP---SELCKLWAYNNQL---------T 174

Query: 247 TLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGF 306
           +LP L                 L  L+      ++ N L  +LP     L  L  YN   
Sbjct: 175 SLPMLP--------------SGLQELS------VSDNQLA-SLPTLPSELYKLWAYN--- 210

Query: 307 NKIVSSGDDEGLSFITSLTNS-THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHI 365
           N+            +TSL    + L  L + GN+    +P         L +L + GN +
Sbjct: 211 NR------------LTSLPALPSGLKELIVSGNRLTS-LPVLPSE----LKELMVSGNRL 253

Query: 366 YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN---EIPGGIPNSLA 422
              +P     L S   L +  N ++  +P  +  L     + L GN   E        + 
Sbjct: 254 -TSLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEE 476
           +    +   +  +      P          +  L   R     P        +E
Sbjct: 309 SAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 476 EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD 535
                     +++ ++ L+  LP+ L     +  L++  N     + ++ A    L  L+
Sbjct: 35  RACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNN----LTSLPALPPELRTLE 87

Query: 536 LSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPS 571
           +S N+L+ S+P     L  L   +    +L  +   
Sbjct: 88  VSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG 122

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  125 bits (316), Expect = 8e-32
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 54/199 (27%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWK--------------------SFI 690
           I + +L       + +  IG+GSFG+V        W                      F+
Sbjct: 34  IPWCDL-------NIKEKIGAGSFGTVHR----AEWHGSDVAVKILMEQDFHAERVNEFL 82

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----- 745
            E   ++ +RH N+V  + + +   +     L++V E+LS GSL   +H     E     
Sbjct: 83  REVAIMKRLRHPNIVLFMGAVTQPPN-----LSIVTEYLSRGSLYRLLHKSGAREQLDER 137

Query: 746 ------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
                  D+   ++YLHN    P+VH +LK  N+L+D++ T KV DFGL+R         
Sbjct: 138 RRLSMAYDVAKGMNYLHN-RNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLK------A 190

Query: 800 SSISSTHVFMGSIGYVPPE 818
           S+  S+    G+  ++ PE
Sbjct: 191 STFLSSKSAAGTPEWMAPE 209

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  121 bits (307), Expect = 7e-31
 Identities = 50/214 (23%), Positives = 81/214 (37%), Gaps = 53/214 (24%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLH------------------NERTGSWKSFIAE 692
           I + EL         E +IG G FG V                     + + + ++   E
Sbjct: 4   IDFAELTL-------EEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQE 56

Query: 693 CETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------- 745
            +    ++H N++ L   C          L LV EF   G L   + G+R          
Sbjct: 57  AKLFAMLKHPNIIALRGVCL-----KEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWA 111

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--------TAKVGDFGLARFLLERVD 797
           + I   ++YLH++  VP++H DLK  NIL+ +++          K+ DFGLAR       
Sbjct: 112 VQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREW----- 166

Query: 798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
              +   +    G+  ++ PE       S   DV
Sbjct: 167 -HRTTKMSAA--GAYAWMAPEVIRASMFSKGSDV 197

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  122 bits (307), Expect = 2e-30
 Identities = 63/347 (18%), Positives = 123/347 (35%), Gaps = 63/347 (18%)

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIV 310
           L  + C +     +P  +    +  ++ + +N +   L       L  L    +  NKI 
Sbjct: 35  LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS 91

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP 370
              +        + +    L  L +  N    +IP ++   S+ L +L +  N I  K+P
Sbjct: 92  KIHEK-------AFSPLRKLQKLYISKNHLV-EIPPNL--PSS-LVELRIHDNRIR-KVP 139

Query: 371 ASI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
             +   LR++  +++  N +      E G   GL                      KLN 
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGL----------------------KLNY 176

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           + +S  +LTG   I     ++L  + L +N+I   I    L            +  + L 
Sbjct: 177 LRISEAKLTG---IPKDLPETLNELHLDHNKIQ-AIELEDLLRYS-------KLYRLGLG 225

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD- 548
            N +      SL    +L EL +  N+ S  +P  + +LK L+V+ L +N ++  +  + 
Sbjct: 226 HNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVND 283

Query: 549 ------LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGN 586
                          ++L  N +         FR +++   +     
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  114 bits (288), Expect = 7e-28
 Identities = 63/274 (22%), Positives = 98/274 (35%), Gaps = 34/274 (12%)

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASIGRLRSLTLLDL 384
           S     L L  N    ++ +   +F     L  L L  N I      +   LR L  L +
Sbjct: 53  SPDTTLLDLQNNDIS-ELRK--DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109

Query: 385 SYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS 444
           S N +     I       L  L +  N I        + L+ +N I++ GN L       
Sbjct: 110 SKNHLVE---IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE-NSGFE 165

Query: 445 FGNFQ--SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLK 502
            G F    L  + +S  ++   IPK +   L E          + L  N +       L 
Sbjct: 166 PGAFDGLKLNYLRISEAKLT-GIPKDLPETLNE----------LHLDHNKIQAIELEDLL 214

Query: 503 NCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTF 562
               L  L + +NQ        ++ L  L  L L +NKLS  +P+ L +L+ L+ + L  
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273

Query: 563 NNLEGVVPSEGIFRNM---------SNVHLKGNP 587
           NN+  V      F  +         + + L  NP
Sbjct: 274 NNITKV--GVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  110 bits (277), Expect = 2e-26
 Identities = 64/351 (18%), Positives = 116/351 (33%), Gaps = 69/351 (19%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P ++S   +  +LDL  N ++         +  L  L L +N++  +I           
Sbjct: 48  VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIH---------- 94

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                           +   L  +Q + ++ N L   +PP L     L    I  N+I  
Sbjct: 95  --------------EKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK 137

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN-ELSKLYLGGNHIYGKIP 370
                        +   ++N + + GN  E       G F   +L+ L +    +   IP
Sbjct: 138 VPKG-------VFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRISEAKL-TGIP 188

Query: 371 ASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
             +    +L  L L +N I   I +E   +   L  LGL  N+I      SL+ L  L +
Sbjct: 189 KDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRE 245

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           + L  N+L+  +P    + + L  + L  N I   +      P+   + R         +
Sbjct: 246 LHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRA------YYN 297

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
             SL  N          +    +    F          +     +   + K
Sbjct: 298 GISLFNN---------PVPYWEVQPATFRC--------VTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (273), Expect = 6e-26
 Identities = 57/274 (20%), Positives = 101/274 (36%), Gaps = 22/274 (8%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA 152
            L  L ++ L NNK+S    +    L +L+ L IS N+L  E+P N+   + L  L +  
Sbjct: 76  GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHD 132

Query: 153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL 212
           N+I  +V       LR++  +  G N L  S                  L  L ++  +L
Sbjct: 133 NRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG-------FEPGAFDGLKLNYLRISEAKL 184

Query: 213 AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNL 272
              +P  +    +L  L L  N++   I  +       L       N+      GSL  L
Sbjct: 185 T-GIPKDL--PETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
             ++ + + +N L   +P GL +L  L+   +  N I +         +       + N 
Sbjct: 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNG 298

Query: 333 LALDGNQFE-GKIPESIGNFSN--ELSKLYLGGN 363
           ++L  N     ++      F    +   +  G  
Sbjct: 299 ISLFNNPVPYWEVQP--ATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  108 bits (272), Expect = 9e-26
 Identities = 79/355 (22%), Positives = 118/355 (33%), Gaps = 73/355 (20%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
           LRV+  S   L+  +P  IS   +  +LDL  N I+                        
Sbjct: 35  LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS------------------------ 67

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
              +          D   L++L  L L  N+++         +  L  L ++ N L  EI
Sbjct: 68  --ELRKD-------DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEI 117

Query: 241 PYDVRDTLPNL--LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLL-EGTLPPGLGNLP 297
           P    +   +L  L      NR      G    L N+  I M  N L      PG  +  
Sbjct: 118 P---PNLPSSLVELRIHD--NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNS--THLNYLALDGNQFEGKIPESIGNFSN-- 353
            L    I   K            +T +       LN L LD N+ +  I     +     
Sbjct: 173 KLNYLRISEAK------------LTGIPKDLPETLNELHLDHNKIQ-AIEL--EDLLRYS 217

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN-- 411
           +L +L LG N I      S+  L +L  L L  N +S  +P  +  L+ LQV+ L  N  
Sbjct: 218 KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276

Query: 412 -EIPGGI---PNSLANLKKLNQIDLSGNELTGEI--PISFGNFQSLLSIDLSNNR 460
            ++                 N I L  N +      P +F      L+I   N +
Sbjct: 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  103 bits (259), Expect = 5e-24
 Identities = 60/265 (22%), Positives = 100/265 (37%), Gaps = 29/265 (10%)

Query: 329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS 388
           HL  +       +  +P+ I   S + + L L  N I          L+ L  L L  N 
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK 89

Query: 389 ISGEIPIEI-GQLQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS 444
           IS +I  +    L+ LQ L ++ N   EIP  +P+SL  L       +  N +       
Sbjct: 90  IS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVEL------RIHDNRIRKVPKGV 142

Query: 445 FGNFQSLLSIDLSNNRI-NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN 503
           F   +++  I++  N + N     G    L         +  + +S+  L+G   +  + 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL--------KLNYLRISEAKLTGIPKDLPET 194

Query: 504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTF 562
              L EL + +N+        +     L  L L  N++   I +  L  L  LR L+L  
Sbjct: 195 ---LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDN 250

Query: 563 NNLEGVVPSEGIFRNMSNVHLKGNP 587
           N L  V       + +  V+L  N 
Sbjct: 251 NKLSRVPAGLPDLKLLQVVYLHTNN 275

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  119 bits (301), Expect = 3e-30
 Identities = 35/198 (17%), Positives = 68/198 (34%), Gaps = 56/198 (28%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWK--------------------SFI 690
           I + +L       +    +     G +      G W+                     F 
Sbjct: 7   IDFKQL-------NFLTKLNENHSGELWK----GRWQGNDIVVKVLKVRDWSTRKSRDFN 55

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---- 746
            EC  LR   H N++ ++ +C S  + +     L+  ++  GSL + +H      +    
Sbjct: 56  EECPRLRIFSHPNVLPVLGACQSPPAPH---PTLITHWMPYGSLYNVLHEGTNFVVDQSQ 112

Query: 747 ------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
                 D+   + +LH   E  +    L   ++++DE+MTA++    +            
Sbjct: 113 AVKFALDMARGMAFLHT-LEPLIPRHALNSRSVMIDEDMTARISMADVKF---------- 161

Query: 801 SISSTHVFMGSIGYVPPE 818
           S  S    M +  +V PE
Sbjct: 162 SFQSPGR-MYAPAWVAPE 178

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  123 bits (310), Expect = 6e-30
 Identities = 78/480 (16%), Positives = 145/480 (30%), Gaps = 74/480 (15%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKIT 156
             S      ++          L  L  L+   +++  ++   I KLT L  L   +N I 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNI- 76

Query: 157 GRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV 216
              T   L    +L  L    N         + NL   D++ L  L  L+   N+L    
Sbjct: 77  ---TTLDLSQNTNLTYLACDSN--------KLTNL---DVTPLTKLTYLNCDTNKLTKLD 122

Query: 217 PSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQ 276
            S       L +L  A N L  EI          L +     N+   K+   +   T + 
Sbjct: 123 VS---QNPLLTYLNCARNTL-TEIDV---SHNTQLTELDCHLNKKITKLD--VTPQTQLT 173

Query: 277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD 336
            +  + N +   L   +     L   N   N I              L  +  L +L   
Sbjct: 174 TLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNITK----------LDLNQNIQLTFLDCS 220

Query: 337 GNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIE 396
            N+   +I   +   +  L+      N +  ++  S   L  LT L      +     I+
Sbjct: 221 SNKLT-EID--VTPLTQ-LTYFDCSVNPL-TELDVST--LSKLTTLHCIQTDLLE---ID 270

Query: 397 IGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDL 456
           +     L      G          + +  +L  +D     +T    +       L+ + L
Sbjct: 271 LTHNTQLIYFQAEGC--RKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYL 325

Query: 457 SNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQ 516
           +N  +   +           +S    + ++   +  +  +   S+    +L     A  Q
Sbjct: 326 NNTELT-ELD----------VSHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQ 372

Query: 517 FSGPIPNIVAELK-----GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPS 571
                   +           ++LD   N ++   P D        +  +T+ NL    P+
Sbjct: 373 TITMPKETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQA-TNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (264), Expect = 4e-24
 Identities = 80/447 (17%), Positives = 162/447 (36%), Gaps = 62/447 (13%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
              ++F ++ T +     L+ L S+   N+ ++ ++   I  L  L  L  + NN+    
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITT-- 78

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIA------ 189
            +++S+ T L  L   +NK+T    +  +  L  L  LN   N L   +  S        
Sbjct: 79  -LDLSQNTNLTYLACDSNKLT----NLDVTPLTKLTYLNCDTNKL-TKLDVSQNPLLTYL 132

Query: 190 ----NLIPS-DLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDV 244
               N +   D+S    L  LD  +N+        +   T L  L  + N++      DV
Sbjct: 133 NCARNTLTEIDVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKI---TELDV 187

Query: 245 RDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI 304
                 L       N  T K+   L+    +  +  + N L   +   +  L  L  ++ 
Sbjct: 188 SQ-NKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDC 240

Query: 305 GFNKIVSSGDDEGLSFITSL------------TNSTHLNYLALDGNQFEGKIPESIGNFS 352
             N + +  D   LS +T+L            T++T L Y   +G +   ++   + + +
Sbjct: 241 SVNPL-TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD--VTHNT 297

Query: 353 NELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNE 412
             L  L      I  ++   + +   L  L L+   ++    +++     L+ L      
Sbjct: 298 Q-LYLLDCQAAGI-TELD--LSQNPKLVYLYLNNTELTE---LDVSHNTKLKSLSCVNAH 350

Query: 413 IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP 472
           I      S+  +  LN    +  +       +  N  + L+I +S + ++     G    
Sbjct: 351 IQD-FS-SVGKIPALNNNFEAEGQTITMPKETLTN--NSLTIAVSPDLLDQF---GNPMN 403

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLPN 499
           +      + +  T  ++  +LS + P 
Sbjct: 404 IEPGDGGVYDQATNTITWENLSTDNPA 430

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 5e-21
 Identities = 65/389 (16%), Positives = 115/389 (29%), Gaps = 79/389 (20%)

Query: 178 NLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG 237
           N L      S  +  P D     N          +  T   +   + +L  L   ++ + 
Sbjct: 1   NTLKAGQTQSFNDWFPDD-----NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI- 54

Query: 238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP 297
                     +  +                    LT +  +  T N +  TL   L    
Sbjct: 55  --------TDMTGI------------------EKLTGLTKLICTSNNIT-TLD--LSQNT 85

Query: 298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSK 357
            L       NK+ +            +T  T L YL  D N+   K+  S    +  L+ 
Sbjct: 86  NLTYLACDSNKLTN----------LDVTPLTKLTYLNCDTNKLT-KLDVSQ---NPLLTY 131

Query: 358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGI 417
           L    N +  +I   +     LT LD   N       +++     L  L  + N+I    
Sbjct: 132 LNCARNTLT-EID--VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKI---T 183

Query: 418 PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEI 477
              ++  K LN+++   N +T    +       L  +D S+N++   I           +
Sbjct: 184 ELDVSQNKLLNRLNCDTNNITK---LDLNQNIQLTFLDCSSNKLT-EID----------V 229

Query: 478 SRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLS 537
           + L  +   D S N L+  L  S      L  L          I   +     L      
Sbjct: 230 TPLTQLTYFDCSVNPLT-ELDVS--TLSKLTTLHCIQTDLLE-ID--LTHNTQLIYFQAE 283

Query: 538 SNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
             +    +  D+ +   L  L+     + 
Sbjct: 284 GCRKIKEL--DVTHNTQLYLLDCQAAGIT 310

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.9 bits (226), Expect = 3e-19
 Identities = 49/295 (16%), Positives = 102/295 (34%), Gaps = 37/295 (12%)

Query: 306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHI 365
           F   V++  +   +   S      L  L    +     +   I   +  L+KL    N+I
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTG-LTKLICTSNNI 76

Query: 366 YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK 425
              +   + +  +LT L    N ++    +++  L  L  L    N++       ++   
Sbjct: 77  -TTLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKL---TKLDVSQNP 127

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE---------- 475
            L  ++ + N LT    I   +   L  +D   N+    +       L            
Sbjct: 128 LLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184

Query: 476 -EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL 534
            ++S+ + +  ++   N+++  L   L     L  L  + N+ +  I   V  L  L   
Sbjct: 185 LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238

Query: 535 DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
           D S N L+  +   +  L  L +L+    +L  +  +      +     +G  K+
Sbjct: 239 DCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTH--NTQLIYFQAEGCRKI 288

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score =  117 bits (296), Expect = 3e-29
 Identities = 44/182 (24%), Positives = 73/182 (40%), Gaps = 36/182 (19%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK---------------SFIAECE--TLRNVRHRNLVKLI 708
              +G G +G V      GSW+               S+  E E      +RH N++  I
Sbjct: 13  LECVGKGRYGEVWR----GSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFI 68

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHND--- 758
            S  +    + + L L+  +   GSL D++     +        L I S L +LH +   
Sbjct: 69  ASDMTSRHSSTQ-LWLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFG 127

Query: 759 --CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
              +  + H DLK  NIL+ +     + D GLA  +  +  NQ  + +    +G+  Y+ 
Sbjct: 128 TQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV-MHSQSTNQLDVGNNPR-VGTKRYMA 185

Query: 817 PE 818
           PE
Sbjct: 186 PE 187

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  119 bits (301), Expect = 1e-28
 Identities = 65/254 (25%), Positives = 105/254 (41%), Gaps = 25/254 (9%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQG 402
           +P+ I    +    L L  N+I      +   L  L +L L  NSI  +I +     L  
Sbjct: 69  VPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSN-NR 460
           L  L L  N +      +   L KL ++ L  N +   IP  +F    SL+ +DL    +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 461 INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
           +   I +G    L        N+  ++L   ++  ++P +L     LEEL M+ N F   
Sbjct: 184 LE-YISEGAFEGLF-------NLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEI 233

Query: 521 IPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMS 579
            P     L  L+ L + ++++S  I  +    L +L  LNL  NNL  +     +F  + 
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSL--PHDLFTPLR 290

Query: 580 N---VHLKGNPKLC 590
               +HL  NP  C
Sbjct: 291 YLVELHLHHNPWNC 304

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (270), Expect = 7e-25
 Identities = 61/296 (20%), Positives = 111/296 (37%), Gaps = 54/296 (18%)

Query: 120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
           +   +  +   L  E+P  I   +  + L+LM N I   +  D  R+L  L+VL  G+N 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS 110

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGE 239
                   I  +     + L +L  L+L  N L          ++ L  L L +N +   
Sbjct: 111 --------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ES 161

Query: 240 IPYDVRDTLPNLLD-FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
           IP    + +P+L+   +    +      G+   L N++ + +                  
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-------------- 207

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELS 356
                              +  + +LT    L  L + GN F  +I    G+F     L 
Sbjct: 208 -------------------IKDMPNLTPLVGLEELEMSGNHFP-EIRP--GSFHGLSSLK 245

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGN 411
           KL++  + +      +   L SL  L+L++N++S  +P ++   L+ L  L L  N
Sbjct: 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 93.7 bits (233), Expect = 4e-20
 Identities = 52/247 (21%), Positives = 93/247 (37%), Gaps = 24/247 (9%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
            R + L  N +         +L  L VL +  N+++ ++ V   + L  L  L+L  N +
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL 135

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLT-INRLAG 214
           T  +       L  L+ L    N +  SIP           +R+ +L  LDL  + +L  
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPI-ESIPSYA-------FNRVPSLMRLDLGELKKLEY 186

Query: 215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN 274
                   + +L +L L    +  ++P      L  L +     N F    PGS H L++
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNI-KDMPNLTP--LVGLEELEMSGNHFPEIRPGSFHGLSS 243

Query: 275 IQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYL 333
           ++ + + ++ +   +       L  L   N+  N + S   D         T   +L  L
Sbjct: 244 LKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHD-------LFTPLRYLVEL 295

Query: 334 ALDGNQF 340
            L  N +
Sbjct: 296 HLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.0 bits (221), Expect = 1e-18
 Identities = 43/217 (19%), Positives = 77/217 (35%), Gaps = 15/217 (6%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
           +L  L  +QL  N +          L  L  L +  N L   +P      L++L+ L L 
Sbjct: 97  HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR 211
            N I   +       + SL  L+ G+          +  +       L NLK L+L +  
Sbjct: 156 NNPIE-SIPSYAFNRVPSLMRLDLGEL-------KKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 212 LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHN 271
           +       +  +  L  L ++ N    EI       L +L       ++ +     +   
Sbjct: 208 I--KDMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264

Query: 272 LTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFN 307
           L ++  + + HN L  +LP      L +L   ++  N
Sbjct: 265 LASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 13/153 (8%)

Query: 86  TISPHI-GNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNISKLT 143
           +I  +    +  L  + L   K    +       LF L+ LN+   N++ ++P N++ L 
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLV 218

Query: 144 ELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLK 203
            L+ L++  N     +       L SL+ L    +         ++ +  +    L +L 
Sbjct: 219 GLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNS--------QVSLIERNAFDGLASLV 269

Query: 204 VLDLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
            L+L  N L+         +  LV L L  N  
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  117 bits (296), Expect = 3e-28
 Identities = 69/254 (27%), Positives = 105/254 (41%), Gaps = 25/254 (9%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQG 402
           +P+ I   S     L L  N I      S   LR L +L LS N I   I I     L  
Sbjct: 58  VPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLAN 113

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLS-NNR 460
           L  L L  N +      +   L KL ++ L  N +   IP  +F    SL  +DL    R
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKR 172

Query: 461 INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
           ++  I +G    L        N+  ++L+  +L   +P +L     L+EL ++ N  S  
Sbjct: 173 LS-YISEGAFEGLS-------NLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222

Query: 521 IPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMS 579
            P     L  L+ L +  +++   I  +   NLQ+L  +NL  NNL  +     +F  + 
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLL--PHDLFTPLH 279

Query: 580 N---VHLKGNPKLC 590
           +   +HL  NP  C
Sbjct: 280 HLERIHLHHNPWNC 293

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  104 bits (262), Expect = 7e-24
 Identities = 63/296 (21%), Positives = 116/296 (39%), Gaps = 54/296 (18%)

Query: 120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
           +   +     NL+ E+P  IS  T  ++L+L  N+I   +  +  ++LR L++L   +N 
Sbjct: 44  QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNH 99

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGE 239
                   I  +     + L NL  L+L  NRL          ++ L  L L +N +   
Sbjct: 100 --------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ES 150

Query: 240 IPYDVRDTLPNLLD-FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
           IP    + +P+L    +    R +    G+   L+N++ + +                  
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-------------- 196

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELS 356
                              L  I +LT    L+ L L GN     I    G+F     L 
Sbjct: 197 -------------------LREIPNLTPLIKLDELDLSGNHLS-AIRP--GSFQGLMHLQ 234

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGN 411
           KL++  + I      +   L+SL  ++L++N+++  +P ++   L  L+ + L  N
Sbjct: 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 56/245 (22%), Positives = 97/245 (39%), Gaps = 24/245 (9%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
            R + L  N++         +L  L +L +S N+++  + +   + L  L  L+L  N++
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRL 124

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLT-INRLAG 214
           T  + +     L  L+ L    N +  SIP           +R+ +L+ LDL  + RL+ 
Sbjct: 125 T-TIPNGAFVYLSKLKELWLRNNPI-ESIPSYA-------FNRIPSLRRLDLGELKRLSY 175

Query: 215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN 274
                   +++L +L LA   L  EIP      L  L +     N  +   PGS   L +
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNL-REIPNLTP--LIKLDELDLSGNHLSAIRPGSFQGLMH 232

Query: 275 IQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYL 333
           +Q + M  + ++  +      NL  L   N+  N +     D         T   HL  +
Sbjct: 233 LQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHD-------LFTPLHHLERI 284

Query: 334 ALDGN 338
            L  N
Sbjct: 285 HLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 30/146 (20%), Positives = 52/146 (35%), Gaps = 18/146 (12%)

Query: 448 FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
                 +      +   +P GI          L      +L +N +     NS K+ + L
Sbjct: 42  SNQFSKVICVRKNLR-EVPDGI----STNTRLL------NLHENQIQIIKVNSFKHLRHL 90

Query: 508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLE 566
           E L ++ N            L  L  L+L  N+L+ +IP+     L  L+ L L  N +E
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE 149

Query: 567 GVVPSEGIFRNMSNV---HLKGNPKL 589
            +      F  + ++    L    +L
Sbjct: 150 SI--PSYAFNRIPSLRRLDLGELKRL 173

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score =  115 bits (291), Expect = 3e-28
 Identities = 44/182 (24%), Positives = 70/182 (38%), Gaps = 36/182 (19%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK---------------SFIAECE--TLRNVRHRNLVKLI 708
              IG G +G V      G W+               S+  E E      +RH N++  I
Sbjct: 42  VKQIGKGRYGEVWM----GKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFI 97

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHND--- 758
            +         + L L+ ++  NGSL D++     +            S L +LH +   
Sbjct: 98  AADIKGTGSWTQ-LYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFS 156

Query: 759 --CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
              +  + H DLK  NIL+ +  T  + D GLA   +   +      +T V  G+  Y+P
Sbjct: 157 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRV--GTKRYMP 214

Query: 817 PE 818
           PE
Sbjct: 215 PE 216

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  113 bits (284), Expect = 9e-28
 Identities = 49/196 (25%), Positives = 72/196 (36%), Gaps = 52/196 (26%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSW-------------------KSFIA 691
           I   ++            IGSGSFG+V      G W                   ++F  
Sbjct: 21  IPDGQITV-------GQRIGSGSFGTVYK----GKWHGDVAVKMLNVTAPTPQQLQAFKN 69

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN------- 744
           E   LR  RH N++  +   ++        LA+V ++    SL   +H            
Sbjct: 70  EVGVLRKTRHVNILLFMGYSTA------PQLAIVTQWCEGSSLYHHLHASETKFEMKKLI 123

Query: 745 --ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
                    +DYLH      ++H DLK  NI L E+ T K+GDFGLA        +    
Sbjct: 124 DIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFE 180

Query: 803 SSTHVFMGSIGYVPPE 818
             +    GSI ++ PE
Sbjct: 181 QLS----GSILWMAPE 192

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score =  114 bits (287), Expect = 1e-27
 Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 36/182 (19%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK---------------SFIAECE--TLRNVRHRNLVKLI 708
           +  IG G FG V      G W+               S+  E E      +RH N++  I
Sbjct: 47  QESIGKGRFGEVWR----GKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFI 102

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHND--- 758
            + +  +    + L LV ++  +GSL D+++             L   S L +LH +   
Sbjct: 103 AADNKDNGTWTQ-LWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVG 161

Query: 759 --CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
              +  + H DLK  NIL+ +  T  + D GLA    +   +   I+  H  +G+  Y+ 
Sbjct: 162 TQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV-RHDSATDTIDIAPNHR-VGTKRYMA 219

Query: 817 PE 818
           PE
Sbjct: 220 PE 221

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score =  112 bits (282), Expect = 2e-27
 Identities = 58/278 (20%), Positives = 91/278 (32%), Gaps = 87/278 (31%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLH-----------------------NERTGSWK 687
           ++ +E+        +E  IG G FG V                          E    ++
Sbjct: 16  LADNEI-------EYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQ 68

Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--- 744
            F  E   + N+ H N+VKL                +V EF+  G L   +  +      
Sbjct: 69  EFQREVFIMSNLNHPNIVKLYGLM-------HNPPRMVMEFVPCGDLYHRLLDKAHPIKW 121

Query: 745 ------ELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----EMTAKVGDFGLARFLL 793
                  LDI   ++Y+ N    P+VH DL+  NI L        + AKV DFGL++   
Sbjct: 122 SVKLRLMLDIALGIEYMQN-QNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQ-- 178

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPE-YGLGERPST----------------AGDVPTSES 836
                 S         G+  ++ PE  G  E   T                 G+ P  E 
Sbjct: 179 ---SVHSVSGLL----GNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEY 231

Query: 837 FAGEFNIVKWVESN-----LPENVLQVLDPELRQLMTS 869
             G+   +  +        +PE+      P LR ++  
Sbjct: 232 SYGKIKFINMIREEGLRPTIPEDC----PPRLRNVIEL 265

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score =  112 bits (281), Expect = 4e-27
 Identities = 46/230 (20%), Positives = 74/230 (32%), Gaps = 59/230 (25%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSW-------------------KSFIA 691
           I +++L           LIG G FG V H    G W                   K+F  
Sbjct: 30  IPFEQLEI-------GELIGKGRFGQVYH----GRWHGEVAIRLIDIERDNEDQLKAFKR 78

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN------- 744
           E    R  RH N+V  + +C      +   LA++       +L   +   +         
Sbjct: 79  EVMAYRQTRHENVVLFMGACM-----SPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTR 133

Query: 745 --ELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
               +I   + YLH      ++H DLK  N+  D      + DFGL          +   
Sbjct: 134 QIAQEIVKGMGYLHA---KGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRRED 189

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDV-PTSE-----SFAGEFNIVKW 846
               +  G + ++ PE      P T  D  P S+     +       + +
Sbjct: 190 KLR-IQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALG----TIWY 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  109 bits (275), Expect = 2e-26
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 18/227 (7%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
           +P  I    +   + L  N IS          + L +L L  N +      +   L  L 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 429 QIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID 487
           Q+DLS N     +  + F     L ++ L    +   +  G+ R L      L+    + 
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLA----ALQ---YLY 135

Query: 488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS 547
           L DN+L     ++ ++  +L  L +  N+ S         L  L+ L L  N+++  +  
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 548 D-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNPKLC 590
              ++L  L +L L  NNL  +         +     + L  NP +C
Sbjct: 195 HAFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDNPWVC 239

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 41/192 (21%), Positives = 64/192 (33%), Gaps = 11/192 (5%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
               L  + L +N L+         L  L  L++S N     +       L  L  L L 
Sbjct: 54  ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR 211
              +   +     R L +LQ L    N L  ++P             L NL  L L  NR
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QALPDDT-------FRDLGNLTHLFLHGNR 164

Query: 212 LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHN 271
           ++         + SL  L L  N++   +       L  L+      N  +     +L  
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP 223

Query: 272 LTNIQIIRMTHN 283
           L  +Q +R+  N
Sbjct: 224 LRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 61/282 (21%), Positives = 94/282 (33%), Gaps = 75/282 (26%)

Query: 134 ELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIP 193
            +PV I      + + L  N+I+  V     R  R+L +L    N         +A +  
Sbjct: 25  AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSN--------VLARIDA 73

Query: 194 SDLSRLENLKVLDLTINRLAGTVPS-TIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLL 252
           +  + L  L+ LDL+ N    +V   T + +  L  L L    L  E+            
Sbjct: 74  AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL-QELG----------- 121

Query: 253 DFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS 312
                        PG    L  +Q + +  N L+  LP                      
Sbjct: 122 -------------PGLFRGLAALQYLYLQDNALQ-ALPDDT------------------- 148

Query: 313 GDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIP 370
                        +  +L +L L GN+    +PE    F     L +L L  N +    P
Sbjct: 149 -----------FRDLGNLTHLFLHGNRIS-SVPE--RAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 371 ASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGN 411
            +   L  L  L L  N++S  +P E    L+ LQ L L  N
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 22/180 (12%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
            +P GIP +   +       L GN ++     SF   ++L  + L +N +   I      
Sbjct: 25  AVPVGIPAASQRI------FLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFT 77

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLP-NSLKNCKSLEELLMAYNQFSGPIPNIVAELKG 530
            L         +  +DLSDN+   ++   +      L  L +         P +   L  
Sbjct: 78  GLA-------LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 531 LEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGN 586
           L+ L L  N L  ++P D  ++L  L  L L  N +  V   E  FR + +   + L  N
Sbjct: 131 LQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLHQN 187

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 47/213 (22%), Positives = 75/213 (35%), Gaps = 13/213 (6%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
            + I L  N++S            L +L +  N L   +     + L  L+ LDL  N  
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQ 92

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT 215
              V       L  L  L+  +  L   + P +          L  L+ L L  N L   
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGL-QELGPGL-------FRGLAALQYLYLQDNALQAL 144

Query: 216 VPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNI 275
              T  ++ +L HL L  N++   +P      L +L   +   NR     P +  +L  +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 276 QIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFN 307
             + +  N L   LP   L  L  L+   +  N
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 43/165 (26%), Positives = 64/165 (38%), Gaps = 16/165 (9%)

Query: 76  LNLSSFGLEGTISPHI-GNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQG 133
           L+LS      ++ P     L  L ++ L    L   L   +   L  L+ L +  N LQ 
Sbjct: 85  LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142

Query: 134 ELPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLI 192
            LP +    L  L  L L  N+I+  V +   R L SL  L   +N +   + P      
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRV-AHVHPHA---- 196

Query: 193 PSDLSRLENLKVLDLTINRLAGTVPSTIY-NMTSLVHLRLASNQL 236
                 L  L  L L  N L+  +P+     + +L +LRL  N  
Sbjct: 197 ---FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score =  108 bits (271), Expect = 7e-26
 Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 48/214 (22%)

Query: 651 ISYDELRRATGNFSHENLIGSGSFGSV----------------LHNERTGSWKSFIAECE 694
               +L        H  ++G G FG                  L      + ++F+ E +
Sbjct: 7   FRPSDLI-------HGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVK 59

Query: 695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
            +R + H N++K I           + L  + E++  G+L   I                
Sbjct: 60  VMRCLEHPNVLKFIGVLY-----KDKRLNFITEYIKGGTLRGIIKSMDSQYPWSQRVSFA 114

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS-- 803
            DI S + YLH    + ++H DL   N L+ E     V DFGLAR +++       +   
Sbjct: 115 KDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSL 171

Query: 804 ------STHVFMGSIGYVPPEYGLGERPSTAGDV 831
                   +  +G+  ++ PE   G       DV
Sbjct: 172 KKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDV 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  109 bits (274), Expect = 5e-25
 Identities = 79/469 (16%), Positives = 133/469 (28%), Gaps = 97/469 (20%)

Query: 111 LPREIGNLFRLRVLNISFNNLQG---ELPVNISKLTELKMLDLMANKITGRVTDDQLRNL 167
           +   I N F L   N  +N + G   +      K  +  +     N+    + +  +   
Sbjct: 3   IMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV 227
                L   +  L  S+P ++             + VL++T N L  ++P       SL 
Sbjct: 62  ---SELQLNRLNL-SSLPDNLPP----------QITVLEITQNAL-ISLPELP---ASLE 103

Query: 228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG 287
           +L    N+L          TLP L                SL +L       + +N L  
Sbjct: 104 YLDACDNRL---------STLPELP--------------ASLKHL------DVDNNQLT- 133

Query: 288 TLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS-THLNYLALDGNQFEGKIPE 346
            LP     L ++   N   N+            +T L    T L  L++  NQ    +PE
Sbjct: 134 MLPELPALLEYI---NADNNQ------------LTMLPELPTSLEVLSVRNNQLT-FLPE 177

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT----LLDLSYNSISGEIPIEIGQLQG 402
              +    L  L +  N +   +PA   R               N I+  IP  I  L  
Sbjct: 178 LPES----LEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDP 231

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
              + L  N +   I  SL+      Q D  G  +   +     N       D       
Sbjct: 232 TCTIILEDNPLSSRIRESLSQQ--TAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFP 289

Query: 463 GNIPKGI------LRPLPEEISRLENVVTIDLSDN-----SLSGNLPNSLKNCKSLEELL 511
            N    +              +    +  +  + +          +   L+   +  EL 
Sbjct: 290 ENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELR 349

Query: 512 MAYNQFSGPIP-----NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
                 +          +      L    L      G   +D   L +L
Sbjct: 350 QQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSL 398

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 37/269 (13%), Positives = 80/269 (29%), Gaps = 30/269 (11%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           +N  +  L   +     +L  L    ++NN+L+  LP    +L     L++S N L+  L
Sbjct: 145 INADNNQLT-MLPELPTSLEVLS---VRNNQLTF-LPELPESL---EALDVSTNLLE-SL 195

Query: 136 PVNISKLTELK----MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL 191
           P    +    +          N+IT     + + +L     +    N L      S    
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT--HIPENILSLDPTCTIILEDNPL-----SSRIRE 248

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP-YDVRDTLPN 250
             S  +   +     +  +   G   +    +   V      N+       +   +   +
Sbjct: 249 SLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEH 308

Query: 251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIV 310
              F    +R +  +     +    Q+               L     LR  +       
Sbjct: 309 ANTFSAFLDRLSDTVSARNTSGFREQVAAW---------LEKLSASAELRQQSFAVAADA 359

Query: 311 SSGDDEGLSFITSLTNSTHLNYLALDGNQ 339
           +   ++ ++   +    T L + A +G  
Sbjct: 360 TESCEDRVALTWNNLRKTLLVHQASEGLF 388

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  103 bits (260), Expect = 2e-24
 Identities = 48/202 (23%), Positives = 76/202 (37%), Gaps = 45/202 (22%)

Query: 658 RATGNFSHENLIGSGSFGSVLH--NERTG-------------SWKSFIAECETLRNVRHR 702
           R   +F    ++G G+FG V+   N                    + ++E   L ++ H+
Sbjct: 3   RYASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQ 62

Query: 703 NLVKLITS--------CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------- 747
            +V+   +              K    L +  E+  NG+L D IH               
Sbjct: 63  YVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIH-SENLNQQRDEYWRL 121

Query: 748 ---ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
              I  AL Y+H+     ++H DLKP NI +DE    K+GDFGLA+ +   +D     S 
Sbjct: 122 FRQILEALSYIHSQG---IIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQ 178

Query: 805 T--------HVFMGSIGYVPPE 818
                       +G+  YV  E
Sbjct: 179 NLPGSSDNLTSAIGTAMYVATE 200

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  104 bits (262), Expect = 2e-24
 Identities = 58/327 (17%), Positives = 109/327 (33%), Gaps = 68/327 (20%)

Query: 169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVH 228
           +++ L+   N         I  +  SDL R  NL+ L LT N +      +  ++ SL H
Sbjct: 53  AVKSLDLSNN--------RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

Query: 229 LRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT 288
           L L+ N L           L                       L+++  + +  N  + T
Sbjct: 105 LDLSYNYLS---------NLS----------------SSWFKPLSSLTFLNLLGNPYK-T 138

Query: 289 LPPG--LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE 346
           L       +L  L+   +G     +    +  + +T L        L +D +  +   P+
Sbjct: 139 LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE------ELEIDASDLQSYEPK 192

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL 406
           S+ +  N +S L L        +   +    S+  L+L    +                 
Sbjct: 193 SLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD---------------- 235

Query: 407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIP 466
               +E+  G  NSL        + ++   L  ++         LL ++ S N++  ++P
Sbjct: 236 TFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVP 293

Query: 467 KGILRPLPEEISRLENVVTIDLSDNSL 493
            GI   L        ++  I L  N  
Sbjct: 294 DGIFDRLT-------SLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.8 bits (249), Expect = 1e-22
 Identities = 53/275 (19%), Positives = 92/275 (33%), Gaps = 48/275 (17%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLG 407
             +  +  L L  N I   I  S   R  +L  L L+ N I+  I  +    L  L+ L 
Sbjct: 49  GLTEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 408 LAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIP 466
           L+ N +     +    L  L  ++L GN        S F +   L  + + N      I 
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 467 KGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVA 526
           +     L         +  +++  + L    P SLK+ +++  L++   Q    +   V 
Sbjct: 167 RKDFAGLT-------FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVD 219

Query: 527 ELKGLEVLDLSSNKLSG-------------------------------SIPSDLQNLQAL 555
               +E L+L    L                                  +   L  +  L
Sbjct: 220 VTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279

Query: 556 RSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNP 587
             L  + N L+ V   +GIF  +++   + L  NP
Sbjct: 280 LELEFSRNQLKSV--PDGIFDRLTSLQKIWLHTNP 312

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 61/376 (16%), Positives = 120/376 (31%), Gaps = 110/376 (29%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           IPS L+  E +K LDL+ NR+     S +    +L  L L SN +         +T+   
Sbjct: 46  IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI---------NTIE-- 92

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                           S  +L +++ + +++N L   L                      
Sbjct: 93  --------------EDSFSSLGSLEHLDLSYNYLS-NLSSSW------------------ 119

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
                           + L +L L GN ++     S+ +   +L  L +G    + KI  
Sbjct: 120 ------------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

Query: 372 SI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQI 430
                L  L  L++  + +                            P SL +++ ++ +
Sbjct: 168 KDFAGLTFLEELEIDASDLQ---------------------SYE---PKSLKSIQNVSHL 203

Query: 431 DLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD 490
            L   +    + I      S+  ++L +  ++                            
Sbjct: 204 ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF------------------------HF 239

Query: 491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-L 549
           + LS    NSL    +   + +        +  ++ ++ GL  L+ S N+L  S+P    
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIF 297

Query: 550 QNLQALRSLNLTFNNL 565
             L +L+ + L  N  
Sbjct: 298 DRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 1e-20
 Identities = 48/274 (17%), Positives = 94/274 (34%), Gaps = 39/274 (14%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
               L+++ L +N ++  +  +   +L  L  L++S+N L   L  +    L+ L  L+L
Sbjct: 74  RCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
           + N            +L  LQ+L  G    +  I          D + L  L+ L++  +
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------RKDFAGLTFLEELEIDAS 184

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLH 270
            L    P ++ ++ ++ HL L   Q    +     D   ++                   
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECL---------------- 227

Query: 271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
            L +  +     + L       L      R   I    +           +  L   + L
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL--------FQVMKLLNQISGL 279

Query: 331 NYLALDGNQFEGKIPESI-GNFSNELSKLYLGGN 363
             L    NQ +  +P+ I    ++ L K++L  N
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTS-LQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 91.7 bits (228), Expect = 6e-20
 Identities = 50/273 (18%), Positives = 99/273 (36%), Gaps = 21/273 (7%)

Query: 121 LRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
           ++ L++S N +   +  +   +   L+ L L +N I   + +D   +L SL+ L+   N 
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNY 111

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY-NMTSLVHLRLASNQLGG 238
           L  ++  S           L +L  L+L  N       ++++ ++T L  LR+ +     
Sbjct: 112 L-SNLSSSW-------FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 239 EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL-GNLP 297
           +I       L  L +     +      P SL ++ N+  + +        L         
Sbjct: 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222

Query: 298 FLRTYNIGFNKIVSSGDDEGLSFIT--SLTNSTHLNYLALDGNQFEGKIPESIGNFSNEL 355
            +    +    + +    E LS     SL        + +       ++ + +   S  L
Sbjct: 223 SVECLELRDTDLDTFHFSE-LSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISG-L 279

Query: 356 SKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYN 387
            +L    N +   +P  I  RL SL  + L  N
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 23/167 (13%), Positives = 57/167 (34%), Gaps = 17/167 (10%)

Query: 76  LNLSSFGLEGTISPHI-GNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE 134
           L + +      I       L+FL  +++  + L    P+ + ++  +  L +        
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 135 LPVNISKLTELKMLDLMANKITG-------RVTDDQLRNLRSLQVLNFGKNLLWGSIPPS 187
           L + +   + ++ L+L    +             + L    + + +      L       
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL------- 266

Query: 188 IANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASN 234
               +   L+++  L  L+ + N+L          +TSL  + L +N
Sbjct: 267 --FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score =  100 bits (250), Expect = 3e-23
 Identities = 49/195 (25%), Positives = 75/195 (38%), Gaps = 43/195 (22%)

Query: 657 RRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA------------ECETLRNVRHRNL 704
           +R   +F    LIGSG FG V   +     K+++             E + L  + H N+
Sbjct: 7   KRFGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNI 66

Query: 705 VKLITS-----------CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
           V                  +      + L +  EF   G+L  WI   R  +LD      
Sbjct: 67  VHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALE 126

Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
               IT  +DY+H+     +++ DLKP NI L +    K+GDFGL   L        +  
Sbjct: 127 LFEQITKGVDYIHSKK---LINRDLKPSNIFLVDTKQVKIGDFGLVTSL-------KNDG 176

Query: 804 STHVFMGSIGYVPPE 818
                 G++ Y+ PE
Sbjct: 177 KRTRSKGTLRYMSPE 191

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 99.7 bits (249), Expect = 6e-23
 Identities = 38/188 (20%), Positives = 59/188 (31%), Gaps = 35/188 (18%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF----------------IAECETLRNVRHRNLV 705
           ++     +G G F  V   E       +                  E +  R   H N++
Sbjct: 30  HYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNIL 89

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALD 753
           +L+  C        E   L+  F   G+L + I   +               L I   L+
Sbjct: 90  RLVAYCLRERGAKHEAW-LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLE 148

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM---G 810
            +H        H DLKP NILL +E    + D G        V+      +   +     
Sbjct: 149 AIH---AKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRC 205

Query: 811 SIGYVPPE 818
           +I Y  PE
Sbjct: 206 TISYRAPE 213

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 97.7 bits (244), Expect = 1e-22
 Identities = 50/183 (27%), Positives = 74/183 (40%), Gaps = 41/183 (22%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF------------------IAECETLRNVRHRNLVKLIT 709
            IG+GS+G      R    K                    ++E   LR ++H N+V+   
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYY- 71

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSALDYLH- 756
               +  +    L +V E+   G L   I    K                +T AL   H 
Sbjct: 72  --DRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHR 129

Query: 757 -NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
            +D    V+H DLKP N+ LD +   K+GDFGLAR L    ++ +S + T V  G+  Y+
Sbjct: 130 RSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL----NHDTSFAKTFV--GTPYYM 183

Query: 816 PPE 818
            PE
Sbjct: 184 SPE 186

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 98.8 bits (246), Expect = 1e-22
 Identities = 54/263 (20%), Positives = 86/263 (32%), Gaps = 23/263 (8%)

Query: 318 LSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASIGR 375
           L   T +  S  L  L +   +   +I            L +L L    + G  P  +  
Sbjct: 58  LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117

Query: 376 LRSLTLLDLSYNSIS-GEIPIEIGQLQ-----GLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
                L  L+  ++S       + +LQ     GL+VL +A           +     L+ 
Sbjct: 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST 177

Query: 430 IDLSGNELTGEIPIS----FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
           +DLS N   GE  +        F +L  + L N  +                +    +  
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-----PSGVCSALAAARVQLQG 232

Query: 486 IDLSDNSLSGNLPNSL-KNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGS 544
           +DLS NSL              L  L +++         +      L VLDLS N+L   
Sbjct: 233 LDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL---PAKLSVLDLSYNRLD-R 288

Query: 545 IPSDLQNLQALRSLNLTFNNLEG 567
            PS    L  + +L+L  N    
Sbjct: 289 NPS-PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 93.8 bits (233), Expect = 6e-21
 Identities = 55/313 (17%), Positives = 87/313 (27%), Gaps = 56/313 (17%)

Query: 245 RDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI 304
            D  P+      C      ++ G   +L  +     T   L          +  L    +
Sbjct: 18  SDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLG----QFTDIIKSLSLKRL 73

Query: 305 GFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNE---------- 354
                        L     +   + L  L L+  +  G  P  +   +            
Sbjct: 74  TVRAARIP--SRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 355 -------------------LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPI 395
                              L  L +   H        +    +L+ LDLS N   GE  +
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 396 EI----GQLQGLQVLGLAGNE---IPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGN 447
                  +   LQVL L         G      A   +L  +DLS N L       S   
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 448 FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL 507
              L S++LS   +   +PKG+             +  +DLS N L    P+  +    +
Sbjct: 252 PSQLNSLNLSFTGLKQ-VPKGLPA----------KLSVLDLSYNRLDR-NPSPDE-LPQV 298

Query: 508 EELLMAYNQFSGP 520
             L +  N F   
Sbjct: 299 GNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 85.7 bits (212), Expect = 3e-18
 Identities = 53/222 (23%), Positives = 75/222 (33%), Gaps = 16/222 (7%)

Query: 375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANL--KKLNQIDL 432
            L+ LT+      S      + +  + GLQ L L   E+ G  P  L       LN ++L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 433 SGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
                           Q  L   L    I                  L    T+DLSDN 
Sbjct: 129 RNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS---TLDLSDNP 184

Query: 493 LSGNLPNSLKNC----KSLEELLMAYNQF---SGPIPNIVAELKGLEVLDLSSNKLSGSI 545
             G        C     +L+ L +        SG    + A    L+ LDLS N L  + 
Sbjct: 185 ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244

Query: 546 PSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGN 586
            +        L SLNL+F  L+ V   +G+   +S + L  N
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQV--PKGLPAKLSVLDLSYN 284

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 82.6 bits (204), Expect = 3e-17
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 13/226 (5%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNIS------KLTELK 146
            +S L+ + L+N +++G  P  +       +  ++  N+                   LK
Sbjct: 93  GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152

Query: 147 MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD 206
           +L +         + +Q+R   +L  L+   N   G      A L P     L+ L + +
Sbjct: 153 VLSIAQAHSL-NFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRN 210

Query: 207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
             +   +G   +       L  L L+ N L         D    L      F     ++P
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269

Query: 267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSS 312
             L     + ++ +++N L+    P    LP +   ++  N  + S
Sbjct: 270 KGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.3 bits (198), Expect = 2e-16
 Identities = 51/304 (16%), Positives = 81/304 (26%), Gaps = 40/304 (13%)

Query: 164 LRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNM 223
               RSL+ L    +        +           L+ L V    I          +  +
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDI----IKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 224 TSLVHLRLASNQLGGEIPYD-VRDTLPNLLDFIYCFNRFTG--KIPGSLHNL--TNIQII 278
           + L  L L + ++ G  P   +  T P+L         +         L       ++++
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGN 338
            +            +   P L T ++  N  +    + GL           L  LAL   
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG---ERGLISALCPLKFPTLQVLALRNA 211

Query: 339 QFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIG 398
                                       G   A       L  LDLS+NS+         
Sbjct: 212 GM----------------------ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249

Query: 399 Q-LQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLS 457
                L  L L+   +        A L  L   DLS N L    P S      + ++ L 
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---DLSYNRLD-RNP-SPDELPQVGNLSLK 304

Query: 458 NNRI 461
            N  
Sbjct: 305 GNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.4 bits (154), Expect = 8e-11
 Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 22/203 (10%)

Query: 392 EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIP---ISFGNF 448
           ++ +  G      +L     E   G    +     L ++ +    +   I    +     
Sbjct: 35  DVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGI 94

Query: 449 QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG--NLPNSLKNC-- 504
             L  + L N  + G  P  +L       +   ++  ++L + S +        L+    
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLE------ATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSI-------PSDLQNLQALRS 557
             L+ L +A           V     L  LDLS N   G         P     LQ L  
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 558 LNLTFNNLEGVVPSEGIFRNMSN 580
            N       GV  +  +      
Sbjct: 209 RNAGMETPSGVCSA--LAAARVQ 229

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 34/191 (17%), Positives = 57/191 (29%), Gaps = 20/191 (10%)

Query: 53  NPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNL- 111
              ++   W   +       +  L+++           +     L ++ L +N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 112 ------PREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLR 165
                 P +   L  L + N       G      +   +L+ LDL  N +          
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTS 225
               L  LN     L   +P  +             L VLDL+ NRL    PS    +  
Sbjct: 251 WPSQLNSLNLSFTGL-KQVPKGL----------PAKLSVLDLSYNRLD-RNPSPD-ELPQ 297

Query: 226 LVHLRLASNQL 236
           + +L L  N  
Sbjct: 298 VGNLSLKGNPF 308

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 97.0 bits (242), Expect = 4e-22
 Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 44/202 (21%)

Query: 658 RATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA-----------------ECETLRNVR 700
           R   +F     +G G FG V   +      ++                   E + L  + 
Sbjct: 2   RYLTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLE 61

Query: 701 HRNLVKLITS-------CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
           H  +V+   +            S    +L +  +     +L DW++G    E        
Sbjct: 62  HPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCL 121

Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL---LERVDNQ 799
                I  A+++LH+     ++H DLKP NI    +   KVGDFGL   +    E     
Sbjct: 122 HIFLQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVL 178

Query: 800 SSISSTHVFMGSIG---YVPPE 818
           + + +     G +G   Y+ PE
Sbjct: 179 TPMPAYARHTGQVGTKLYMSPE 200

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (250), Expect = 5e-22
 Identities = 56/275 (20%), Positives = 104/275 (37%), Gaps = 29/275 (10%)

Query: 321 ITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT 380
           I             L           +    ++ + ++    + I   +   I  L ++T
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTD--AVTQNELNS-IDQIIANNSDI-KSVQG-IQYLPNVT 68

Query: 381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE 440
            L L+ N ++   P+    L+ L  L L  N+I   + + L +LKKL  + L  N ++ +
Sbjct: 69  KLFLNGNKLTDIKPLT--NLKNLGWLFLDENKI-KDLSS-LKDLKKLKSLSLEHNGIS-D 123

Query: 441 IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNS 500
           I     +   L S+ L NN+I               +SRL  + T+ L DN +S ++   
Sbjct: 124 IN-GLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQIS-DIVP- 170

Query: 501 LKNCKSLEELLMAYNQFSGPIPNI--VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSL 558
           L     L+ L ++ N     I ++  +A LK L+VL+L S +      +   NL    ++
Sbjct: 171 LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226

Query: 559 NLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL 593
             T  +L                     P+   ++
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 97.1 bits (241), Expect = 6e-21
 Identities = 54/269 (20%), Positives = 89/269 (33%), Gaps = 49/269 (18%)

Query: 194 SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD 253
                       +L    +  T   T   + S+  +   ++ +                 
Sbjct: 15  FPDDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK---------------- 56

Query: 254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSG 313
                      + G +  L N+  + +  N L       L NL  L    +  NKI    
Sbjct: 57  ----------SVQG-IQYLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKD-- 101

Query: 314 DDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI 373
                  ++SL +   L  L+L+ N     I   + +    L  LYLG N I       +
Sbjct: 102 -------LSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQ-LESLYLGNNKI--TDITVL 149

Query: 374 GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS 433
            RL  L  L L  N IS  +P+    L  LQ L L+ N I      +LA LK L+ ++L 
Sbjct: 150 SRLTKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELF 205

Query: 434 GNELTGEIPISFGNFQSLLSIDLSNNRIN 462
             E   +      N     ++  ++  + 
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 79.8 bits (196), Expect = 2e-15
 Identities = 49/304 (16%), Positives = 97/304 (31%), Gaps = 61/304 (20%)

Query: 87  ISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELK 146
           I P     +      L+   ++  +      L  +  +  + ++++  +   I  L  + 
Sbjct: 14  IFP-DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVT 68

Query: 147 MLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD 206
            L L  NK+T       L NL++L  L   +N         I +L  S L  L+ LK L 
Sbjct: 69  KLFLNGNKLT---DIKPLTNLKNLGWLFLDEN--------KIKDL--SSLKDLKKLKSLS 115

Query: 207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
           L  N +  +  + + ++  L  L L +N++                              
Sbjct: 116 LEHNGI--SDINGLVHLPQLESLYLGNNKI---------------------------TDI 146

Query: 267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTN 326
             L  LT +  + +  N +   + P L  L  L+   +  N I           + +L  
Sbjct: 147 TVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD---------LRALAG 195

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
             +L+ L L   +   K      N     + +      +    P  I         ++ +
Sbjct: 196 LKNLDVLELFSQECLNKPINHQSNLVV-PNTVKNTDGSLV--TPEIISDDGDYEKPNVKW 252

Query: 387 NSIS 390
           +   
Sbjct: 253 HLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 65.1 bits (158), Expect = 6e-11
 Identities = 37/166 (22%), Positives = 66/166 (39%), Gaps = 18/166 (10%)

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
            +S  + +L  L+S+ L++N +S ++   + +L +L  L +  N +       +S+LT+L
Sbjct: 101 DLSS-LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKL 155

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
             L L  N+I+       L  L  LQ L   KN         I++L    L+ L+NL VL
Sbjct: 156 DTLSLEDNQIS---DIVPLAGLTKLQNLYLSKN--------HISDL--RALAGLKNLDVL 202

Query: 206 DLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +L          +   N+     ++     L               
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKP 248

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 98.5 bits (246), Expect = 1e-21
 Identities = 73/464 (15%), Positives = 142/464 (30%), Gaps = 95/464 (20%)

Query: 143 TELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL 202
            +++ LD+   +++     + L  L+  QV+          +  +    I S L     L
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSALRVNPAL 58

Query: 203 KVLDLTINRLAGTVPSTIYNM-----TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC 257
             L+L  N L       +          +  L L +  L G                   
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA---GCGV----------- 104

Query: 258 FNRFTGKIPGSLHNLTNIQIIRMTHN---------LLEGTLPPGLGNLPFLRTYNIGFNK 308
                  +  +L  L  +Q + ++ N         L EG L P       L    + +  
Sbjct: 105 -------LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ----CRLEKLQLEYCS 153

Query: 309 IVSSGDDEGLSFITS-LTNSTHLNYLALDGNQFEGK----IPESIGNFSNELSKLYLGGN 363
           +           + S L        L +  N         + + + +   +L  L L   
Sbjct: 154 L----SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC 209

Query: 364 HI----YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPN 419
            +       +   +    SL  L L  N +            G+  L             
Sbjct: 210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDV---------GMAELCPGL--------- 251

Query: 420 SLANLKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE 475
            L    +L  + +    +T +    +       +SL  + L+ N +     + +   L E
Sbjct: 252 -LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLE 310

Query: 476 EISRLENVVTIDLSDNSLSG----NLPNSLKNCKSLEELLMAYNQFSGP-IPNIVAELK- 529
              +LE   ++ +   S +     +  + L   + L EL ++ N+     +  +   L  
Sbjct: 311 PGCQLE---SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367

Query: 530 ---GLEVLDLSSNKLS----GSIPSDLQNLQALRSLNLTFNNLE 566
               L VL L+   +S     S+ + L    +LR L+L+ N L 
Sbjct: 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 94.3 bits (235), Expect = 2e-20
 Identities = 84/507 (16%), Positives = 165/507 (32%), Gaps = 94/507 (18%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFR-LRVLNISFNNLQGE----LPVNISKLTELKMLDLM 151
           ++S+ +Q  +LS     E+  L +  +V+ +    L       +   +     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 152 ANKITGRVTD---DQLRNL-RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL 207
           +N++           L+     +Q L+         +  +   ++ S L  L  L+ L L
Sbjct: 65  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVLSSTLRTLPTLQELHL 120

Query: 208 TINRLAGTVPSTIYNM-----TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFT 262
           + N L       +          L  L+L    L                          
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---------------------C 159

Query: 263 GKIPGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPF-LRTYNIGFNKIVSSGDDEG 317
             +   L    + + + +++N +       L  GL + P  L    +    +     D  
Sbjct: 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV---TSDNC 216

Query: 318 LSFITSLTNSTHLNYLALDGNQFEGK----IPESIGNFSNELSKLYLGGNHI----YGKI 369
                 + +   L  LAL  N+        +   + + S+ L  L++    I     G +
Sbjct: 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276

Query: 370 PASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ 429
              +    SL  L L+ N +  E         G ++L          +      L+ L  
Sbjct: 277 CRVLRAKESLKELSLAGNELGDE---------GARLLCET-------LLEPGCQLESL-- 318

Query: 430 IDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
             +     T              + LL + +SNNR+     + + + L +  S L     
Sbjct: 319 -WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR---V 374

Query: 486 IDLSDNSLS----GNLPNSLKNCKSLEELLMAYNQFSGP-IPNIVAELK----GLEVLDL 536
           + L+D  +S     +L  +L    SL EL ++ N      I  +V  ++     LE L L
Sbjct: 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 434

Query: 537 SSNKLS----GSIPSDLQNLQALRSLN 559
                S      + +  ++  +LR ++
Sbjct: 435 YDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.1 bits (149), Expect = 9e-10
 Identities = 64/370 (17%), Positives = 116/370 (31%), Gaps = 87/370 (23%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFR----LRVLNISFNNLQGE--------LPVNIS 140
               L  +QL+   LS      + ++ R     + L +S N++           L  +  
Sbjct: 140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC 199

Query: 141 KLTELKMLDLMANKITGRVTDD---QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLS 197
           +L     L L +  +T     D    + +  SL+ L  G N L       +A L P  L 
Sbjct: 200 QLEA---LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV---GMAELCPGLLH 253

Query: 198 RLENLKVLDLTINRL----AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD 253
               L+ L +    +     G +   +    SL  L LA N+LG E           L +
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-------GARLLCE 306

Query: 254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSG 313
            +             L     ++ + +                      +          
Sbjct: 307 TL-------------LEPGCQLESLWVKSC-------------------SFT-------- 326

Query: 314 DDEGLSFITS-LTNSTHLNYLALDGNQFEGK----IPESIGNFSNELSKLYLGGNHI--- 365
                S  +S L  +  L  L +  N+ E      + + +G   + L  L+L    +   
Sbjct: 327 -AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385

Query: 366 -YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQL-----QGLQVLGLAGNEIPGGIPN 419
               + A++    SL  LDLS N +     +++ +        L+ L L        + +
Sbjct: 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445

Query: 420 SLANLKKLNQ 429
            L  L+K   
Sbjct: 446 RLQALEKDKP 455

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 52/274 (18%), Positives = 101/274 (36%), Gaps = 34/274 (12%)

Query: 292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF 351
               L        G + +             +  +   +  L+  G      I E +   
Sbjct: 14  PDPALANAIKIAAGKSNVTD---------TVTQADLDGITTLSAFGTGVT-TI-EGVQYL 62

Query: 352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN 411
           +N L  L L  N I     A +  L  +T L+LS N +   +   I  LQ ++ L L   
Sbjct: 63  NN-LIGLELKDNQI--TDLAPLKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTST 117

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
           +I   +   LA L  L  + L  N++T   P++     +L  + + N +++ ++      
Sbjct: 118 QI-TDVTP-LAGLSNLQVLYLDLNQITNISPLA--GLTNLQYLSIGNAQVS-DL------ 166

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL 531
                ++ L  + T+   DN +S ++   L +  +L E+ +  NQ S   P  +A    L
Sbjct: 167 ---TPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNL 219

Query: 532 EVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
            ++ L++  ++        NL     +       
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 25/234 (10%)

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI 413
              K+  G +++   +      L  +T L      ++  I   +  L  L  L L  N+I
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL 473
              +   L NL K+ +++LSGN L   +  +    QS+ ++DL++ +I    P       
Sbjct: 76  -TDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTP------- 124

Query: 474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
              ++ L N+  + L  N ++ N+   L    +L+ L +   Q S  +  + A L  L  
Sbjct: 125 ---LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD-LTPL-ANLSKLTT 177

Query: 534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
           L    NK+S  I S L +L  L  ++L  N +  V P      N+  V L    
Sbjct: 178 LKADDNKIS-DI-SPLASLPNLIEVHLKNNQISDVSPLAN-TSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 59/282 (20%), Positives = 98/282 (34%), Gaps = 31/282 (10%)

Query: 182 GSIPPS--IANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGE 239
           GSI     I  + P     L N   +    + +  T   T  ++  +  L      +   
Sbjct: 1   GSITQPTAINVIFP--DPALANAIKIAAGKSNV--TDTVTQADLDGITTLSAFGTGVTTI 56

Query: 240 IPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFL 299
                   L NL+      N+ T  +   L NLT I  + ++ N L       +  L  +
Sbjct: 57  EGVQ---YLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPL--KNVSAIAGLQSI 109

Query: 300 RTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLY 359
           +T ++   +I         + +T L   ++L  L LD NQ    I   +   +N L  L 
Sbjct: 110 KTLDLTSTQI---------TDVTPLAGLSNLQVLYLDLNQIT-NI-SPLAGLTN-LQYLS 157

Query: 360 LGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPN 419
           +G   +   +   +  L  LT L    N IS   P+    L  L  + L  N+I    P 
Sbjct: 158 IGNAQVS-DLTP-LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP- 212

Query: 420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI 461
            LAN   L  + L+   +T +      N      +   +   
Sbjct: 213 -LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 61/329 (18%), Positives = 122/329 (37%), Gaps = 41/329 (12%)

Query: 138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLS 197
               L     +    + +T  VT     +L  +  L+     +  +I           + 
Sbjct: 14  PDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV-TTIEG---------VQ 60

Query: 198 RLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC 257
            L NL  L+L  N++  T  + + N+T +  L L+ N L           L ++      
Sbjct: 61  YLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAI---AGLQSIKTLDLT 115

Query: 258 FNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEG 317
             + T   P  L  L+N+Q++ +  N +       L  L  L+  +IG  ++        
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSD------ 165

Query: 318 LSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR 377
              +T L N + L  L  D N+    I   + +  N L +++L  N I    P  +    
Sbjct: 166 ---LTPLANLSKLTTLKADDNKIS-DIS-PLASLPN-LIEVHLKNNQISDVSP--LANTS 217

Query: 378 SLTLLDLSYNSISGEIPIEIGQLQGLQ-VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE 436
           +L ++ L+  +I+ +       L     V G +G  I    P ++++       +L+ N 
Sbjct: 218 NLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA---PATISDNGTYASPNLTWNL 274

Query: 437 LTGEIPISFGNFQSLLSIDLSNNRINGNI 465
            +    +S+  F   ++   +    +G +
Sbjct: 275 TSFINNVSY-TFNQSVTFKNTTVPFSGTV 302

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 46/212 (21%), Positives = 90/212 (42%), Gaps = 23/212 (10%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           L +   +    ++++  +      L G+  L   G  +   I   +  L  L  ++L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDN 73

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
           ++T   P+   N   +  ++LS N +  N+           I+ L+++ T+DL+   ++ 
Sbjct: 74  QITDLAPLK--NLTKITELELSGNPLK-NV---------SAIAGLQSIKTLDLTSTQITD 121

Query: 496 NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
                L    +L+ L +  NQ +  I  + A L  L+ L + + ++S  + + L NL  L
Sbjct: 122 --VTPLAGLSNLQVLYLDLNQITN-ISPL-AGLTNLQYLSIGNAQVS-DL-TPLANLSKL 175

Query: 556 RSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
            +L    N +  + P      N+  VHLK N 
Sbjct: 176 TTLKADDNKISDISPLAS-LPNLIEVHLKNNQ 206

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.1 bits (198), Expect = 2e-16
 Identities = 56/298 (18%), Positives = 111/298 (37%), Gaps = 38/298 (12%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA 152
            L+    I    + ++  +     +L  +  L+     +   +   +  L  L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL 212
           N+IT       L+NL  +  L    N L  ++           ++ L+++K LDLT  ++
Sbjct: 73  NQIT---DLAPLKNLTKITELELSGNPLK-NVSA---------IAGLQSIKTLDLTSTQI 119

Query: 213 AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNL 272
             T  + +  +++L  L L  NQ+    P      L NL        + +  +   L NL
Sbjct: 120 --TDVTPLAGLSNLQVLYLDLNQITNISPL---AGLTNLQYLSIGNAQVS-DLTP-LANL 172

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
           + +  ++   N +  +    L +LP L   ++  N+I           ++ L N+++L  
Sbjct: 173 SKLTTLKADDNKI--SDISPLASLPNLIEVHLKNNQISD---------VSPLANTSNLFI 221

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS 390
           + L       +      N           G  I    PA+I    +    +L++N  S
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI---APATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 26/236 (11%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+    G+  TI   +  L+ L  ++L++N+++ +L   + NL ++  L +S N L+  +
Sbjct: 46  LSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLK-NV 100

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
              I+ L  +K LDL + +IT       L  L +LQVL    N         I N+  S 
Sbjct: 101 S-AIAGLQSIKTLDLTSTQIT---DVTPLAGLSNLQVLYLDLN--------QITNI--SP 146

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
           L+ L NL+ L +   ++  +  + + N++ L  L+   N++    P     +LPNL++  
Sbjct: 147 LAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTLKADDNKISDISPL---ASLPNLIEVH 201

Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
              N+ +   P  L N +N+ I+ +T+  +         NL             ++
Sbjct: 202 LKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 22/184 (11%)

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
            +I+   P     L     +    + +      + A+L  +  +   G  +T    +   
Sbjct: 7   TAINVIFPDP--ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEGVQ-- 60

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
              +L+ ++L +N+I  ++           +  L  +  ++LS N L  N+   +   +S
Sbjct: 61  YLNNLIGLELKDNQIT-DL---------APLKNLTKITELELSGNPLK-NVSA-IAGLQS 108

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
           ++ L +   Q +   P  +A L  L+VL L  N+++ +I S L  L  L+ L++    + 
Sbjct: 109 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS 164

Query: 567 GVVP 570
            + P
Sbjct: 165 DLTP 168

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 42/179 (23%)

Query: 668 LIGSGSFGSVLHNERTGSWKSF------------------IAECETLRNVRHRNLVKLIT 709
            IG GSFG  +  + T   + +                    E   L N++H N+V+   
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE 90

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDC 759
           S      +    L +V ++   G L   I+ ++               I  AL ++H   
Sbjct: 91  SF-----EENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVH--- 142

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +  ++H D+K  NI L ++ T ++GDFG+AR L       S++      +G+  Y+ PE
Sbjct: 143 DRKILHRDIKSQNIFLTKDGTVQLGDFGIARVL------NSTVELARACIGTPYYLSPE 195

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 92.9 bits (231), Expect = 1e-20
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 47/184 (25%)

Query: 668 LIGSGSFGSVLH--NERTG---------------SWKSFIAECETLRNVRHRNLVKLITS 710
           ++G G+  +V    +++TG                    + E E L+ + H+N+VKL   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF-- 73

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------------DITSALDYLHND 758
            +  +        L+ EF   GSL   +  E  N              D+   +++L  +
Sbjct: 74  -AIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNHLREN 131

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
               +VH ++KPGNI+     D +   K+ DFG AR L            +    G+  Y
Sbjct: 132 G---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL-----EDDEQFVS--LYGTEEY 181

Query: 815 VPPE 818
           + P+
Sbjct: 182 LHPD 185

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKSF----------------IAECETLRNVR-HRNLVKLI 708
             ++  G F  V   +  GS + +                I E   ++ +  H N+V+  
Sbjct: 33  RRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFC 92

Query: 709 TSCSS----LDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----------DITSALD 753
           ++ S      D+   EFL L    L  G L +++                       A+ 
Sbjct: 93  SAASIGKEESDTGQAEFLLL--TELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQ 150

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV------ 807
           ++H   + P++H DLK  N+LL  + T K+ DFG A  +    D   S     +      
Sbjct: 151 HMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEIT 209

Query: 808 FMGSIGYVPPE 818
              +  Y  PE
Sbjct: 210 RNTTPMYRTPE 220

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 91.1 bits (227), Expect = 3e-20
 Identities = 42/193 (21%), Positives = 70/193 (36%), Gaps = 44/193 (22%)

Query: 655 ELRRATGNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECET 695
            +     +F   NL+G GSF  V    +  TG         K  +           E + 
Sbjct: 5   CIGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKI 64

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
              ++H ++++L       +  N  +L L  E   NG +  ++   R             
Sbjct: 65  HCQLKHPSILELYNY---FEDSNYVYLVL--EMCHNGEMNRYLK-NRVKPFSENEARHFM 118

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
             I + + YLH+     ++H DL   N+LL   M  K+ DFGLA         +      
Sbjct: 119 HQIITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLA------TQLKMPHEKH 169

Query: 806 HVFMGSIGYVPPE 818
           +   G+  Y+ PE
Sbjct: 170 YTLCGTPNYISPE 182

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 91.1 bits (227), Expect = 4e-20
 Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 47/199 (23%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA-------- 691
           P++  D   R+   +     +G G F     + +  T          KS +         
Sbjct: 5   PEVLVD--PRSRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKM 62

Query: 692 --ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-- 747
             E    R++ H+++V         +  +  F+ L  E     SL +    +R+  L   
Sbjct: 63  SMEISIHRSLAHQHVVGFHGF---FEDNDFVFVVL--ELCRRRSLLELH--KRRKALTEP 115

Query: 748 --------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
                   I     YLH +    V+H DLK GN+ L+E++  K+GDFGLA     +V+  
Sbjct: 116 EARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA----TKVEYD 168

Query: 800 SSISSTHVFMGSIGYVPPE 818
                     G+  Y+ PE
Sbjct: 169 GERKKV--LCGTPNYIAPE 185

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 46/203 (22%), Positives = 83/203 (40%), Gaps = 48/203 (23%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSW-----------KSFIA----ECETLRNV-RHRNLV 705
           +F  ++++G G+ G+++     G +               +    E + LR    H N++
Sbjct: 25  SFCPKDVLGHGAEGTIV---YRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVI 81

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDYLH 756
           +    C+  D    +F  +  E L   +L +++         L+        TS L +LH
Sbjct: 82  RYF--CTEKDR---QFQYIAIE-LCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH 135

Query: 757 NDCEVPVVHSDLKPGNILLDE-----EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
               + +VH DLKP NIL+       ++ A + DFGL + L      + S S      G+
Sbjct: 136 ---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL---AVGRHSFSRRSGVPGT 189

Query: 812 IGYVPPEY---GLGERPSTAGDV 831
            G++ PE       E P+   D+
Sbjct: 190 EGWIAPEMLSEDCKENPTYTVDI 212

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 91.8 bits (228), Expect = 8e-20
 Identities = 42/184 (22%), Positives = 74/184 (40%), Gaps = 47/184 (25%)

Query: 668 LIGSGSFGSVLH--NERTG---------------SWKSFIAECETLRNVRHRNLVKLITS 710
           ++G G+  +V    +++TG                    + E E L+ + H+N+VKL   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLF-- 73

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------------DITSALDYLHND 758
            +  +        L+ EF   GSL   +  E  N              D+   +++L  +
Sbjct: 74  -AIEEETTTRHKVLIMEFCPCGSLYTVLE-EPSNAYGLPESEFLIVLRDVVGGMNHLREN 131

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
               +VH ++KPGNI+     D +   K+ DFG AR L    ++     S     G+  Y
Sbjct: 132 G---IVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAREL----EDDEQFVS---LYGTEEY 181

Query: 815 VPPE 818
           + P+
Sbjct: 182 LHPD 185

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.9 bits (216), Expect = 1e-19
 Identities = 24/190 (12%), Positives = 66/190 (34%), Gaps = 18/190 (9%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
            ++     L  +S +    I   Q+  L  + LA   +   +   +     +  + ++  
Sbjct: 22  FKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINV-TDLTG-IEYAHNIKDLTINNI 76

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
             T   PIS     +L  + +    +  +            +S L ++  +D+S ++   
Sbjct: 77  HATNYNPIS--GLSNLERLRIMGKDVTSDKI--------PNLSGLTSLTLLDISHSAHDD 126

Query: 496 NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQAL 555
           ++   +     +  + ++YN     I  +   L  L+ L++  + +       +++   L
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDY--RGIEDFPKL 183

Query: 556 RSLNLTFNNL 565
             L      +
Sbjct: 184 NQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 86.2 bits (214), Expect = 2e-19
 Identities = 35/190 (18%), Positives = 74/190 (38%), Gaps = 18/190 (9%)

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI 413
                 LG +        +  ++ SLT + L+  +++    IE      ++ L +     
Sbjct: 24  AYLNGLLGQSST---ANITEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHA 78

Query: 414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPL 473
                N ++ L  L ++ + G ++T +   +     SL  +D+S++  + +I        
Sbjct: 79  TN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL------- 129

Query: 474 PEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
             +I+ L  V +IDLS N    ++   LK    L+ L + ++         + +   L  
Sbjct: 130 -TKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQ 185

Query: 534 LDLSSNKLSG 543
           L   S  + G
Sbjct: 186 LYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 32/168 (19%), Positives = 64/168 (38%), Gaps = 14/168 (8%)

Query: 420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR 479
           + A +  L  I L+   +T    I      ++  + ++N     N            IS 
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHAT-NY---------NPISG 86

Query: 480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
           L N+  + +    ++ +   +L    SL  L ++++     I   +  L  +  +DLS N
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYN 146

Query: 540 KLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
                I   L+ L  L+SLN+ F+ +      E  F  ++ ++     
Sbjct: 147 GAITDI-MPLKTLPELKSLNIQFDGVHDYRGIED-FPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 3e-16
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 18/181 (9%)

Query: 317 GLSFITSLTNS--THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG 374
           G S   ++T +    L Y+ L        +   I    N +  L +   H        I 
Sbjct: 31  GQSSTANITEAQMNSLTYITLANINVT-DL-TGIEYAHN-IKDLTINNIHA--TNYNPIS 85

Query: 375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG 434
            L +L  L +    ++ +    +  L  L +L ++ +     I   +  L K+N IDLS 
Sbjct: 86  GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           N    +I         L S+++  + ++ +            I     +  +     ++ 
Sbjct: 146 NGAITDIM-PLKTLPELKSLNIQFDGVH-DY---------RGIEDFPKLNQLYAFSQTIG 194

Query: 495 G 495
           G
Sbjct: 195 G 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 15/144 (10%)

Query: 422 ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLE 481
           +  K      L  +       I+     SL  I L+N  +  ++           I    
Sbjct: 20  STFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL---------TGIEYAH 66

Query: 482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL 541
           N+  + +++   +    N +    +LE L +     +      ++ L  L +LD+S +  
Sbjct: 67  NIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 542 SGSIPSDLQNLQALRSLNLTFNNL 565
             SI + +  L  + S++L++N  
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.8 bits (187), Expect = 1e-15
 Identities = 28/170 (16%), Positives = 61/170 (35%), Gaps = 15/170 (8%)

Query: 271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL 330
            + ++  I + +  +      G+     ++   I              + I+ L+N   L
Sbjct: 42  QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHA------TNYNPISGLSN---L 90

Query: 331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS 390
             L + G         ++   ++ L+ L +  +     I   I  L  +  +DLSYN   
Sbjct: 91  ERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE 440
            +I   +  L  L+ L +  + +       + +  KLNQ+      + G+
Sbjct: 150 TDIM-PLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 29/211 (13%), Positives = 66/211 (31%), Gaps = 43/211 (20%)

Query: 101 QLQNNKLSGNLPREI--GNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGR 158
              N  L  +    I    +  L  + ++  N+  +L   I     +K L +     T  
Sbjct: 24  AYLNGLLGQSSTANITEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-- 79

Query: 159 VTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPS 218
              + +  L +L+ L              + +    +LS L +L +LD++ +    ++ +
Sbjct: 80  -NYNPISGLSNLERLRIMGK--------DVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 219 TIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQII 278
            I  +  +  + L+ N    +I                            L  L  ++ +
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIM--------------------------PLKTLPELKSL 164

Query: 279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKI 309
            +  + +      G+ + P L         I
Sbjct: 165 NIQFDGV--HDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 31/200 (15%), Positives = 72/200 (36%), Gaps = 27/200 (13%)

Query: 166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTS 225
             ++      G++        S AN+  + ++ L  + + ++ +  L G     I    +
Sbjct: 21  TFKAYLNGLLGQS--------STANITEAQMNSLTYITLANINVTDLTG-----IEYAHN 67

Query: 226 LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLL 285
           +  L + +       P      L NL          T     +L  LT++ ++ ++H+  
Sbjct: 68  IKDLTINNIHATNYNPIS---GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 286 EGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP 345
           + ++   +  LP + + ++ +N  ++         I  L     L  L +  +       
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITD--------IMPLKTLPELKSLNIQFDGVHD--Y 174

Query: 346 ESIGNFSNELSKLYLGGNHI 365
             I +F   L++LY     I
Sbjct: 175 RGIEDFPK-LNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 15/129 (11%)

Query: 87  ISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELK 146
            +P I  LS L  +++    ++ +    +  L  L +L+IS +     +   I+ L ++ 
Sbjct: 81  YNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 147 MLDLMANKITGRVTD-DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
            +DL  N     +TD   L+ L  L+ LN   +         + +     +     L  L
Sbjct: 140 SIDLSYNG---AITDIMPLKTLPELKSLNIQFD--------GVHDY--RGIEDFPKLNQL 186

Query: 206 DLTINRLAG 214
                 + G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 15/103 (14%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L +    +     P++  L+ L  + + ++    ++  +I  L ++  +++S+N    ++
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
              +  L ELK L++  + +        + +   L  L     
Sbjct: 153 M-PLKTLPELKSLNIQFDGVH---DYRGIEDFPKLNQLYAFSQ 191

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 93.2 bits (231), Expect = 1e-19
 Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 52/198 (26%)

Query: 658 RATGNFSHENLIGSGSFGSVLH--NERTG------------------SWKSFIAECETLR 697
           +  G +  +  +G+G FG VL   ++ TG                   W     E + ++
Sbjct: 11  QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCL---EIQIMK 67

Query: 698 NVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-ERKNEL------- 746
            + H N+V           L   ++  LA+  E+   G L  +++  E    L       
Sbjct: 68  KLNHPNVVSAREVPDGLQKLAPNDLPLLAM--EYCEGGDLRKYLNQFENCCGLKEGPIRT 125

Query: 747 ---DITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLERVDNQS 800
              DI+SAL YLH   E  ++H DLKP NI+L    + +  K+ D G A+ L     +Q 
Sbjct: 126 LLSDISSALRYLH---ENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKEL-----DQG 177

Query: 801 SISSTHVFMGSIGYVPPE 818
            + +   F+G++ Y+ PE
Sbjct: 178 ELCTE--FVGTLQYLAPE 193

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 89.4 bits (222), Expect = 1e-19
 Identities = 54/216 (25%), Positives = 100/216 (46%), Gaps = 20/216 (9%)

Query: 378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNEL 437
           S   ++    +++  +P ++   +   +L L+ N +      +L    +L Q++L   EL
Sbjct: 11  SHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 438 TGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNL 497
           T ++ +  G    L ++DLS+N+         L+ LP     L  +  +D+S N L+   
Sbjct: 68  T-KLQV-DGTLPVLGTLDLSHNQ---------LQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 498 PNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL-QNLQALR 556
             +L+    L+EL +  N+     P ++     LE L L++N L+  +P+ L   L+ L 
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLD 175

Query: 557 SLNLTFNNLEGVVPSEGIFRNMS--NVHLKGNPKLC 590
           +L L  N+L  +   +G F +       L GNP LC
Sbjct: 176 TLLLQENSLYTI--PKGFFGSHLLPFAFLHGNPWLC 209

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 72.8 bits (179), Expect = 4e-14
 Identities = 49/160 (30%), Positives = 68/160 (42%), Gaps = 15/160 (9%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           LNL    L  T     G L  L ++ L +N+L  +LP     L  L VL++SFN L   L
Sbjct: 60  LNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115

Query: 136 PVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPS 194
           P+     L EL+ L L  N++   +    L     L+ L+   N L   +P  +      
Sbjct: 116 PLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGL------ 167

Query: 195 DLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASN 234
            L+ LENL  L L  N L  T+P   +    L    L  N
Sbjct: 168 -LNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 4e-13
 Identities = 50/217 (23%), Positives = 80/217 (36%), Gaps = 26/217 (11%)

Query: 93  NLSFLRSIQLQNNKLS---GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLD 149
            ++    +      L+    +LP++        +L++S N L       +   T L  L+
Sbjct: 8   KVASHLEVNCDKRNLTALPPDLPKD------TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 150 LMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTI 209
           L   ++T    D  L  L +   L+   N L  S+P             L  L VLD++ 
Sbjct: 62  LDRAELTKLQVDGTLPVLGT---LDLSHNQL-QSLPLLGQT--------LPALTVLDVSF 109

Query: 210 NRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSL 269
           NRL       +  +  L  L L  N+L   +P  +    P L       N  T    G L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 270 HNLTNIQIIRMTHNLLEGTLPPG---LGNLPFLRTYN 303
           + L N+  + +  N L  T+P G      LPF   + 
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 48/193 (24%), Positives = 67/193 (34%), Gaps = 24/193 (12%)

Query: 273 TNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLN 331
            +  I+ ++ NLL  T     L     L   N+   ++     D  L           L 
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTL---------PVLG 80

Query: 332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSIS 390
            L L  NQ +  +P         L+ L +  N +   +P      L  L  L L  N + 
Sbjct: 81  TLDLSHNQLQ-SLPLLGQTLPA-LTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELK 137

Query: 391 GEIPIEI-GQLQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
             +P  +      L+ L LA N   E+P G+ N L NL  L    L  N L   IP  F 
Sbjct: 138 -TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL---LLQENSLYT-IPKGFF 192

Query: 447 NFQSLLSIDLSNN 459
               L    L  N
Sbjct: 193 GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 19/146 (13%)

Query: 444 SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN 503
                 S L ++     +   +P  +    P++ + L       LS+N L      +L  
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDL----PKDTTIL------HLSENLLYTFSLATLMP 53

Query: 504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN 563
              L +L +   + +  +  +   L  L  LDLS N+L  S+P   Q L AL  L+++FN
Sbjct: 54  YTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFN 110

Query: 564 NLEGVVPSEGIFRNMSNV---HLKGN 586
            L  +    G  R +  +   +LKGN
Sbjct: 111 RLTSL--PLGALRGLGELQELYLKGN 134

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 44/169 (26%), Positives = 69/169 (40%), Gaps = 31/169 (18%)

Query: 668 LIGSGSFGSVLH--NERTGS---WK-------------SFIAECETLRNVRHRNLVKLIT 709
            IG GSF +V    +  T     W               F  E E L+ ++H N+V+   
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL------DITSALDYLHNDCEV 761
           S  S      + + LV E +++G+L  ++      K ++       I   L +LH     
Sbjct: 93  SWESTVKGK-KCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH-TRTP 150

Query: 762 PVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           P++H DLK  NI +     + K+GD GLA     R     ++  T  FM
Sbjct: 151 PIIHRDLKCDNIFITGPTGSVKIGDLGLATLK--RASFAKAVIGTPEFM 197

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 45/199 (22%), Positives = 74/199 (37%), Gaps = 47/199 (23%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSV--LHNERTGSW-------KSFIA-------- 691
           P++  D   R    +     +G G F     + +  T          KS +         
Sbjct: 31  PEVLVDPRSR--RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKM 88

Query: 692 --ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-- 747
             E    R++ H+++V         +  +  F+ L  E     SL +    +R+  L   
Sbjct: 89  SMEISIHRSLAHQHVVGFHGF---FEDNDFVFVVL--ELCRRRSLLELH--KRRKALTEP 141

Query: 748 --------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQ 799
                   I     YLH +    V+H DLK GN+ L+E++  K+GDFGLA     +V+  
Sbjct: 142 EARYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLA----TKVEYD 194

Query: 800 SSISSTHVFMGSIGYVPPE 818
                     G+  Y+ PE
Sbjct: 195 GERKKV--LCGTPNYIAPE 211

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 41/248 (16%), Positives = 85/248 (34%), Gaps = 21/248 (8%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGL 408
           +      +L      +      +      L  +++S N +   I  ++   L  L  + +
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86

Query: 409 AGN----EIPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRING 463
                   I    P +  NL  L  + +S   +   +P +   +    + +D+ +N    
Sbjct: 87  EKANNLLYIN---PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH 142

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPN 523
            I +     L          V + L+ N +     ++    +  E  L   N       +
Sbjct: 143 TIERNSFVGLSF------ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND 196

Query: 524 IVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVH 582
           +     G  +LD+S  ++  S+PS  L+NL+ LR+ +    NL+ +   E     +    
Sbjct: 197 VFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST--YNLKKLPTLEK-LVALMEAS 252

Query: 583 LKGNPKLC 590
           L      C
Sbjct: 253 LTYPSHCC 260

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 55/274 (20%), Positives = 85/274 (31%), Gaps = 45/274 (16%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           IPSDL R  N   L   + +L             L  + ++ N +   I           
Sbjct: 24  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE---------- 71

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTH-NLLEGTLPPG-LGNLPFLRTYNIGFNKI 309
                              NL  +  IR+   N L   + P    NLP L+   I    I
Sbjct: 72  --------------ADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGI 116

Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPE-SIGNFSNELSKLYLGGNHIYGK 368
               D           +S     L +  N     I   S    S E   L+L  N I  +
Sbjct: 117 KHLPDV-------HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-E 168

Query: 369 IPASI-GRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKK 426
           I  S     +   L     N++  E+P ++     G  +L ++   I       L NLKK
Sbjct: 169 IHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKK 227

Query: 427 LNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNR 460
           L        +   ++P +     +L+   L+   
Sbjct: 228 LRARSTYNLK---KLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.9 bits (179), Expect = 8e-14
 Identities = 45/296 (15%), Positives = 88/296 (29%), Gaps = 55/296 (18%)

Query: 98  RSIQLQNNKLS---GNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMAN 153
           R    Q +K++    +LPR          L      L+  +     S   +L+ +++  N
Sbjct: 12  RVFLCQESKVTEIPSDLPRN------AIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQN 64

Query: 154 KITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA 213
            +   +  D   NL  L  +   K         ++  + P     L NL+ L ++   + 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKA-------NNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 214 GTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIY-CFNRFTGKIPGSLHNL 272
                   +    V L +  N     I  +    L      ++   N        + +  
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
              ++    +N LE  LP                                    ++    
Sbjct: 178 QLDELNLSDNNNLE-ELPND------------------------------VFHGASGPVI 206

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS 388
           L +   +    +P       N L KL     +   K+P ++ +L +L    L+Y S
Sbjct: 207 LDISRTRIH-SLPS--YGLEN-LKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.1 bits (156), Expect = 6e-11
 Identities = 37/212 (17%), Positives = 73/212 (34%), Gaps = 18/212 (8%)

Query: 76  LNLSSFGLEGTISPHI-GNLSFLRSIQLQN-NKLSGNLPREI-GNLFRLRVLNISFNNLQ 132
           + +S   +   I   +  NL  L  I+++  N L   +  E   NL  L+ L IS   ++
Sbjct: 59  IEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIK 117

Query: 133 GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRS-LQVLNFGKNLLWGSIPPSIANL 191
               V+     +  +LD+  N     +  +    L     +L   KN +   I  S  N 
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNG 176

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
                   +  ++     N L        +  +  V L ++  ++   +P    + L  L
Sbjct: 177 -------TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKL 228

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
                  + +  K   +L  L  +    +T+ 
Sbjct: 229 ----RARSTYNLKKLPTLEKLVALMEASLTYP 256

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 45/187 (24%), Positives = 77/187 (41%), Gaps = 39/187 (20%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA-----------ECETLRNVR 700
           G +   +L+G GS+G V    +  T          K  +            E + LR +R
Sbjct: 5   GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLR 64

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGS--LGDWIHGERKNELD-------ITSA 751
           H+N+++L+    + + K   ++  V E+   G   + D +  +R            +   
Sbjct: 65  HKNVIQLVDVLYN-EEKQKMYM--VMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDG 121

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L+YLH+     +VH D+KPGN+LL    T K+   G+A  L     +     +     GS
Sbjct: 122 LEYLHSQG---IVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAAD----DTCRTSQGS 174

Query: 812 IGYVPPE 818
             + PPE
Sbjct: 175 PAFQPPE 181

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 87.6 bits (218), Expect = 4e-19
 Identities = 43/153 (28%), Positives = 68/153 (44%), Gaps = 41/153 (26%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS----------------FIAECETLRNVRHRNLVKLIT 709
              IG G FG V+     G ++                 F+AE   +  +RH NLV+L+ 
Sbjct: 26  LQTIGKGEFGDVML----GDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG 81

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYL--HN 757
                  +    L +V E+++ GSL D++    ++ L          D+  A++YL  +N
Sbjct: 82  VIV----EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN 137

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                 VH DL   N+L+ E+  AKV DFGL +
Sbjct: 138 -----FVHRDLAARNVLVSEDNVAKVSDFGLTK 165

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 89.8 bits (223), Expect = 7e-19
 Identities = 47/210 (22%), Positives = 84/210 (40%), Gaps = 53/210 (25%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK-------------------SFIAECETLRNVRHRNLVK 706
           ++ +G G +G V      G WK                    F+ E   ++ ++H NLV+
Sbjct: 225 KHKLGGGQYGEVYE----GVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ 280

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLH 756
           L+  C+           ++ EF++ G+L D++    + E+           I+SA++YL 
Sbjct: 281 LLGVCT-----REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 335

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
              +   +H +L   N L+ E    KV DFGL+R +     +  +  +   F   I +  
Sbjct: 336 ---KKNFIHRNLAARNCLVGENHLVKVADFGLSRLMT---GDTYTAHAGAKFP--IKWTA 387

Query: 817 PEYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           PE     + S   DV         F ++ W
Sbjct: 388 PESLAYNKFSIKSDVWA-------FGVLLW 410

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 89.3 bits (222), Expect = 9e-19
 Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 37/151 (24%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK----------------SFIAECETLRNVRHRNLVKLIT 709
              IG G FG V+     G ++                +F+AE   +  +RH NLV+L+ 
Sbjct: 198 LQTIGKGEFGDVML----GDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG 253

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDC 759
                  +    L +V E+++ GSL D++    ++ L          D+  A++YL    
Sbjct: 254 VIV----EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLE--- 306

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
               VH DL   N+L+ E+  AKV DFGL +
Sbjct: 307 GNNFVHRDLAARNVLVSEDNVAKVSDFGLTK 337

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 31/232 (13%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEIG---Q 399
           IP+++         L L  N +   + +        L +LDLS   I     IE G    
Sbjct: 22  IPDNL---PFSTKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQT---IEDGAYQS 74

Query: 400 LQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDL 456
           L  L  L L GN    +  G  + L++L+KL         L        G+ ++L  +++
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKL---VAVETNLASLENFPIGHLKTLKELNV 131

Query: 457 SNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE----ELLM 512
           ++N I  +        LPE  S L N+  +DLS N +       L+    +      L +
Sbjct: 132 AHNLIQ-SFK------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 513 AYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFN 563
           + N  +   P    E++ L+ L L +N+L  S+P      L +L+ + L  N
Sbjct: 185 SLNPMNFIQPGAFKEIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.9 bits (182), Expect = 1e-14
 Identities = 40/197 (20%), Positives = 81/197 (41%), Gaps = 18/197 (9%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
           +   L+ + L   ++   +      +L  L  L ++ N +Q  L +   S L+ L+ L  
Sbjct: 50  SFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
           +   +   + +  + +L++L+ LN   NL+  S        +P   S L NL+ LDL+ N
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLI-QSFK------LPEYFSNLTNLEHLDLSSN 159

Query: 211 RLAGTVPSTIYNMTSL----VHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
           ++     + +  +  +    + L L+ N +   I       +  L +     N+      
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEI-RLKELALDTNQLKSVPD 217

Query: 267 GSLHNLTNIQIIRMTHN 283
           G    LT++Q I +  N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 21/172 (12%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
           +IP  +P S  NL      DLS N L      SF +F  L  +DLS   I   I  G   
Sbjct: 21  KIPDNLPFSTKNL------DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAY- 72

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAE-LKG 530
                   L ++ T+ L+ N +      +     SL++L+      +  + N     LK 
Sbjct: 73  ------QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKT 125

Query: 531 LEVLDLSSNKLSGSIPSD--LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
           L+ L+++ N +  S        NL  L  L+L+ N ++ +       R +  
Sbjct: 126 LKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSI--YCTDLRVLHQ 174

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
            + L L+ N +      S  +  +L  +DLS  E+      ++ +   L ++ L+ N I 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQF-SGPI 521
            ++  G         S L ++  +   + +L+      + + K+L+EL +A+N   S  +
Sbjct: 90  -SLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 522 PNIVAELKGLEVLDLSSNKLSGSIPSD----LQNLQALR-SLNLTFNNLEGVVPSEGIFR 576
           P   + L  LE LDLSSNK+  SI       L  +  L  SL+L+ N +  +    G F+
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMNFI--QPGAFK 198

Query: 577 NMSNVHL 583
            +    L
Sbjct: 199 EIRLKEL 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.9 bits (177), Expect = 7e-14
 Identities = 56/258 (21%), Positives = 87/258 (33%), Gaps = 52/258 (20%)

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
           P N+      K LDL  N +   +      +   LQVL+  +  +  +I           
Sbjct: 23  PDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIEDGA------- 71

Query: 196 LSRLENLKVLDLTINRLAGTVPSTI-YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF 254
              L +L  L LT N +  ++       ++SL  L      L          +L      
Sbjct: 72  YQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNL---------ASLE----- 116

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL-GNLPFLRTYNIGFNKI--VS 311
                         + +L  ++ + + HNL++    P    NL  L   ++  NKI  + 
Sbjct: 117 -----------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN-ELSKLYLGGNHIYGKIP 370
             D   L  +  L  S     L L  N     I    G F    L +L L  N +   +P
Sbjct: 166 CTDLRVLHQMPLLNLS-----LDLSLNPMN-FIQP--GAFKEIRLKELALDTNQL-KSVP 216

Query: 371 ASI-GRLRSLTLLDLSYN 387
             I  RL SL  + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 38/225 (16%), Positives = 88/225 (39%), Gaps = 24/225 (10%)

Query: 347 SIGNFSNELSKLYLGGNHIYGKIPA-SIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQ 404
            I +       L L   H+   IP+ +   L +++ + +S +    ++       L  + 
Sbjct: 25  RIPSLPPSTQTLKLIETHL-RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83

Query: 405 VLGLAGN----EIPGGIPNSLANLKKLNQIDLSGNELTGEIP--ISFGNFQSLLSIDLSN 458
            + +        I    P++L  L  L  + +    L    P      +      +++++
Sbjct: 84  HIEIRNTRNLTYID---PDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 459 NRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS 518
           N    +IP    + L  E       +T+ L +N  + ++     N   L+ + +  N++ 
Sbjct: 140 NPYMTSIPVNAFQGLCNE------TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYL 192

Query: 519 GPIP-NIVAELK-GLEVLDLSSNKLSGSIPSD-LQNLQALRSLNL 560
             I  +    +  G  +LD+S   ++ ++PS  L++L+ L + N 
Sbjct: 193 TVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 38/208 (18%), Positives = 73/208 (35%), Gaps = 19/208 (9%)

Query: 378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNEL 437
                 ++   I   IP         Q L L    +     ++ +NL  +++I +S +  
Sbjct: 12  QEEDFRVTCKDIQ-RIP---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67

Query: 438 TGEIPI-SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN 496
             ++   SF N   +  I++ N R    I    L+ LP        +  + + +  L   
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-------LLKFLGIFNTGLK-M 119

Query: 497 LPN--SLKNCKSLEELLMAYNQFSGPIP-NIVAEL-KGLEVLDLSSNKLSGSIPSDLQNL 552
            P+   + +      L +  N +   IP N    L      L L +N  + S+     N 
Sbjct: 120 FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178

Query: 553 QALRSLNLTFNNLEGVVPSEGIFRNMSN 580
             L ++ L  N    V+  +  F  + +
Sbjct: 179 TKLDAVYLNKNKYLTVID-KDAFGGVYS 205

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 36/235 (15%), Positives = 69/235 (29%), Gaps = 38/235 (16%)

Query: 201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR 260
           + + L L    L         N+ ++  + ++ +                 L  +     
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSID---------------VTLQQLE---- 72

Query: 261 FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSGDDEGLS 319
                  S +NL+ +  I + +      + P  L  LP L+   I    +          
Sbjct: 73  -----SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM------FP 121

Query: 320 FITSLTNSTHLNYLALDGNQFEGKIPE-SIGNFSNELSKLYLGGNHIYGKIPASIGRLRS 378
            +T + ++     L +  N +   IP  +     NE   L L  N     +         
Sbjct: 122 DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTK 180

Query: 379 LTLLDLSYNSISGEIPIEI--GQLQGLQVLGLAGN---EIPGGIPNSLANLKKLN 428
           L  + L+ N     I  +   G   G  +L ++      +P      L  L   N
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 7e-12
 Identities = 30/213 (14%), Positives = 75/213 (35%), Gaps = 16/213 (7%)

Query: 97  LRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
            ++++L    L         NL  +  + +S +    +L  +    L+++  +++   + 
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN 92

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT 215
              +  D L+ L  L+ L      L    P          +   +   +L++T N    +
Sbjct: 93  LTYIDPDALKELPLLKFLGIFNTGL-KMFPDLTK------VYSTDIFFILEITDNPYMTS 145

Query: 216 VPS-TIYNMTS-LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP-GSLHNL 272
           +P      + +  + L+L +N     +     +    L       N++   I   +   +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGV 203

Query: 273 -TNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYN 303
            +   ++ ++   +   LP   L +L  L   N
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 15/113 (13%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNK 540
           +  T+ L +  L     ++  N  ++  + ++ +     +  +    L  +  +++ + +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 541 LSGSIPSD-LQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNPKL 589
               I  D L+ L  L+ L +    L+ + P      +      + +  NP +
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYM 143

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 40/160 (25%), Positives = 68/160 (42%), Gaps = 45/160 (28%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS-------------------FIAECETLRNVRHRNLVK 706
           ++ +G G +G V      G WK                    F+ E   ++ ++H NLV+
Sbjct: 18  KHKLGGGQYGEVYE----GVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQ 73

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYL- 755
           L+  C+           ++ EF++ G+L D++    + E+           I+SA++YL 
Sbjct: 74  LLGVCT-----REPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE 128

Query: 756 -HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             N      +H DL   N L+ E    KV DFGL+R +  
Sbjct: 129 KKN-----FIHRDLAARNCLVGENHLVKVADFGLSRLMTG 163

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 45/189 (23%)

Query: 661 GNFSHENLIGSGSFGSVL--HNERTGS---WK--------------SFIAECETLRNVRH 701
            NF  E  IG G F  V        G     K                I E + L+ + H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD----------IT 749
            N++K   S           L +V E    G L   I    ++K  +           + 
Sbjct: 92  PNVIKYYASF-----IEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLC 146

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           SAL+++H+     V+H D+KP N+ +      K+GD GL RF      ++++ + + V  
Sbjct: 147 SALEHMHSRR---VMHRDIKPANVFITATGVVKLGDLGLGRFF----SSKTTAAHSLV-- 197

Query: 810 GSIGYVPPE 818
           G+  Y+ PE
Sbjct: 198 GTPYYMSPE 206

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 85.9 bits (213), Expect = 2e-18
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 29/247 (11%)

Query: 321 ITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT 380
           I S           L           +    ++ + ++    + I   +   I  L ++T
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTD--AVTQNELNS-IDQIIANNSDI-KSVQG-IQYLPNVT 71

Query: 381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE 440
            L L+ N ++   P+    L+ L  L L  N++     +SL +LKKL  + L  N ++ +
Sbjct: 72  KLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGIS-D 126

Query: 441 IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNS 500
           I     +   L S+ L NN+I  +I           +SRL  + T+ L DN +S ++   
Sbjct: 127 IN-GLVHLPQLESLYLGNNKIT-DI---------TVLSRLTKLDTLSLEDNQIS-DIVP- 173

Query: 501 LKNCKSLEELLMAYNQFSGPIPNI--VAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSL 558
           L     L+ L ++ N     I ++  +A LK L+VL+L S +      +   NL    ++
Sbjct: 174 LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 229

Query: 559 NLTFNNL 565
             T  +L
Sbjct: 230 KNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 84.3 bits (209), Expect = 7e-18
 Identities = 47/276 (17%), Positives = 95/276 (34%), Gaps = 38/276 (13%)

Query: 269 LHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNST 328
                      +    +   +      L  +       + I S         +  +    
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS---------VQGIQYLP 68

Query: 329 HLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
           ++  L L+GN+        I   +N   L  L+L  N +   +  S+  L+ L  L L +
Sbjct: 69  NVTKLFLNGNKLT-----DIKPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEH 121

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           N IS    +    L  L+ L L  N+I       L+ L KL+ + L  N+++  +P++  
Sbjct: 122 NGISDINGLV--HLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVPLA-- 175

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
               L ++ LS N I+ ++           ++ L+N+  ++L          N   N   
Sbjct: 176 GLTKLQNLYLSKNHIS-DL---------RALAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS 542
              +           P I+++    E  ++  +   
Sbjct: 226 PNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.9 bits (195), Expect = 4e-16
 Identities = 56/285 (19%), Positives = 95/285 (33%), Gaps = 31/285 (10%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           ++P  I  +              +L    +  T   T   + S+  +   ++ +      
Sbjct: 9   TVPTPIKQIFS--DDAFAETIKDNLKKKSV--TDAVTQNELNSIDQIIANNSDIK----- 59

Query: 243 DVR--DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLR 300
            V+    LPN+       N+ T  I   L NL N+  + +  N ++      L +L  L+
Sbjct: 60  SVQGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115

Query: 301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL 360
           + ++  N I           I  L +   L  L L  N+        +   +  L  L L
Sbjct: 116 SLSLEHNGISD---------INGLVHLPQLESLYLGNNKI--TDITVLSRLTK-LDTLSL 163

Query: 361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNS 420
             N I   I   +  L  L  L LS N IS ++   +  L+ L VL L   E      N 
Sbjct: 164 EDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINH 219

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNI 465
            +NL   N +  +   L     IS        ++          +
Sbjct: 220 QSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 8e-13
 Identities = 43/261 (16%), Positives = 85/261 (32%), Gaps = 57/261 (21%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMA 152
             +      L+   ++  +      L  +  +  + ++++  +   I  L  +  L L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNG 77

Query: 153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL 212
           NK+T       L NL++L  L   +N         + +L  S L  L+ LK L L  N +
Sbjct: 78  NKLT---DIKPLANLKNLGWLFLDEN--------KVKDL--SSLKDLKKLKSLSLEHNGI 124

Query: 213 AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNL 272
             +  + + ++  L  L L +N++                                L  L
Sbjct: 125 --SDINGLVHLPQLESLYLGNNKI---------------------------TDITVLSRL 155

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
           T +  + +  N +  +    L  L  L+   +  N I           + +L    +L+ 
Sbjct: 156 TKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNHISD---------LRALAGLKNLDV 204

Query: 333 LALDGNQFEGKIPESIGNFSN 353
           L L   +   K      N   
Sbjct: 205 LELFSQECLNKPINHQSNLVV 225

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 17/146 (11%)

Query: 91  IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
           + +L  L+S+ L++N +S ++   + +L +L  L +  N +       +S+LT+L  L L
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSL 163

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
             N+I+       L  L  LQ L   KN         I++L    L+ L+NL VL+L   
Sbjct: 164 EDNQIS---DIVPLAGLTKLQNLYLSKN--------HISDL--RALAGLKNLDVLELFSQ 210

Query: 211 RLAGTVPSTIYNMTSLVHLRLASNQL 236
                  +   N+     ++     L
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSL 236

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 53/209 (25%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK------------------SFIAECETLRNVRHRNLVKL 707
           E  +G G FG V      G+W                   +F+ E + ++ +RH  LV+L
Sbjct: 189 EVKLGQGCFGEVWM----GTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL 244

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
               S       E + +V E++S GSL D++ GE    L           I S + Y+  
Sbjct: 245 YAVVSE------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE- 297

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              +  VH DL+  NIL+ E +  KV DFGLAR +    DN+ +      F   I +  P
Sbjct: 298 --RMNYVHRDLRAANILVGENLVCKVADFGLARLIE---DNEYTARQGAKFP--IKWTAP 350

Query: 818 EYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           E  L  R +   DV +       F I+  
Sbjct: 351 EAALYGRFTIKSDVWS-------FGILLT 372

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 35/157 (22%), Positives = 67/157 (42%), Gaps = 41/157 (26%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK------------------SFIAECETLRNVRHRNLVKL 707
           E  +G+G FG V       ++                   +F+AE   ++ ++H  LVKL
Sbjct: 193 EKKLGAGQFGEVWM----ATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKL 248

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
               +       E + ++ EF++ GSL D++  +  ++            I   + ++  
Sbjct: 249 HAVVTK------EPIYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIE- 301

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             +   +H DL+  NIL+   +  K+ DFGLAR + +
Sbjct: 302 --QRNYIHRDLRAANILVSASLVCKIADFGLARVIED 336

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 89.1 bits (221), Expect = 2e-18
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 21/149 (14%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--- 745
            +AE + L  V H ++V++       D        +V E++   SL      +       
Sbjct: 126 AMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAI 185

Query: 746 ---LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSI 802
              L+I  AL YLH    + +V++DLKP NI+L EE   K+ D G              I
Sbjct: 186 AYLLEILPALSYLH---SIGLVYNDLKPENIMLTEE-QLKLIDLGAVS----------RI 231

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           +S     G+ G+  PE      P+ A D+
Sbjct: 232 NSFGYLYGTPGFQAPEIVRTG-PTVATDI 259

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 85.3 bits (212), Expect = 3e-18
 Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 33/153 (21%)

Query: 666 ENLIGSGSFGSVLH--------------NERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
              +G+G FG V                 + + S  +F+AE   ++ ++H+ LV+L    
Sbjct: 18  VERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVV 77

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDCEV 761
           +       E + ++ E++ NGSL D++      +L           I   + ++    E 
Sbjct: 78  TQ------EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIE---ER 128

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
             +H DL+  NIL+ + ++ K+ DFGLAR + +
Sbjct: 129 NYIHRDLRAANILVSDTLSCKIADFGLARLIED 161

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 35/158 (22%)

Query: 666 ENLIGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
              +G G+FGSV                    L +      + F  E E L++++H N+V
Sbjct: 15  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 74

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYLH 756
           K    C S   +N+    L+ E+L  GSL D++   ++     +L      I   ++YL 
Sbjct: 75  KYKGVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG 131

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                  +H DL   NIL++ E   K+GDFGL + L +
Sbjct: 132 ---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ 166

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 85.0 bits (211), Expect = 3e-18
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 43/185 (23%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECETLRNVRH 701
            +F     +G G FG+V     ++           KS +           E E   ++RH
Sbjct: 14  DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRH 73

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALD 753
            N++++         +   +L L  EF   G L   +    + +E         +  AL 
Sbjct: 74  PNILRMYNY---FHDRKRIYLML--EFAPRGELYKELQKHGRFDEQRSATFMEELADALH 128

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           Y H      V+H D+KP N+L+  +   K+ DFG +          +         G++ 
Sbjct: 129 YCHERK---VIHRDIKPENLLMGYKGELKIADFGWS--------VHAPSLRRRTMCGTLD 177

Query: 814 YVPPE 818
           Y+PPE
Sbjct: 178 YLPPE 182

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 45/185 (24%), Positives = 65/185 (35%), Gaps = 44/185 (23%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSW----------------KSFIAECETLRNV-RHR 702
           +F   + +G GS+G V    ++  G                     +AE  +   V +H 
Sbjct: 58  SFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHP 117

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNE-------LDITSALD 753
             V+L  +      +    L L  E     SL       G    E        D   AL 
Sbjct: 118 CCVRLEQA-----WEEGGILYLQTEL-CGPSLQQHCEAWGASLPEAQVWGYLRDTLLALA 171

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           +LH+     +VH D+KP NI L      K+GDFGL   L        +  +  V  G   
Sbjct: 172 HLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVEL-------GTAGAGEVQEGDPR 221

Query: 814 YVPPE 818
           Y+ PE
Sbjct: 222 YMAPE 226

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 85.9 bits (213), Expect = 5e-18
 Identities = 30/205 (14%), Positives = 68/205 (33%), Gaps = 62/205 (30%)

Query: 661 GNFSHENLIGSGSFGSVLHNERTGSW-------KSFIA---------------------- 691
            ++     +  G F  ++  E+   +       KS +                       
Sbjct: 31  NDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDF 90

Query: 692 --ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--- 746
             E + + ++++   +      +  +      + ++YE++ N S+  +       +    
Sbjct: 91  KNELQIITDIKNEYCLTCEGIIT--NYDE---VYIIYEYMENDSILKFDEYFFVLDKNYT 145

Query: 747 -------------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
                         + ++  Y+HN  E  + H D+KP NIL+D+    K+ DFG +    
Sbjct: 146 CFIPIQVIKCIIKSVLNSFSYIHN--EKNICHRDVKPSNILMDKNGRVKLSDFGES---- 199

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPE 818
                           G+  ++PPE
Sbjct: 200 ----EYMVDKKIKGSRGTYEFMPPE 220

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 85.3 bits (211), Expect = 6e-18
 Identities = 45/206 (21%), Positives = 72/206 (34%), Gaps = 26/206 (12%)

Query: 632 KRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKSFIA 691
           + K  R  V AL K+ HP I       A      E          +          S   
Sbjct: 48  REKVMR-EVKALAKLEHPGIV--RYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSP 104

Query: 692 ECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--- 747
                  +R         T      S    +L +  +     +L DW++  R +  D   
Sbjct: 105 MDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMN-RRCSLEDREH 163

Query: 748 ---------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
                    I  A+++LH+     ++H DLKP NI    +   KVGDFGL   + +  + 
Sbjct: 164 GVCLHIFIQIAEAVEFLHSKG---LMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEE 220

Query: 799 QSSISSTHVFM---GSIG---YVPPE 818
           Q+ ++    +    G +G   Y+ PE
Sbjct: 221 QTVLTPMPAYATHTGQVGTKLYMSPE 246

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 84.7 bits (210), Expect = 7e-18
 Identities = 38/179 (21%), Positives = 68/179 (37%), Gaps = 41/179 (22%)

Query: 667 NLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL--VKL 707
             IGSG    V                 L      +  S+  E   L  ++  +   ++L
Sbjct: 34  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 93

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHNDC 759
                       +++ +V E   N  L  W+  ++  +  +       +  A+  +H   
Sbjct: 94  YDYE-----ITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG 147

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              +VHSDLKP N L+ + M  K+ DFG+A  +     +    S     +G++ Y+PPE
Sbjct: 148 ---IVHSDLKPANFLIVDGM-LKLIDFGIANQMQPDTTSVVKDS----QVGTVNYMPPE 198

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 85.4 bits (212), Expect = 8e-18
 Identities = 38/184 (20%), Positives = 64/184 (34%), Gaps = 46/184 (25%)

Query: 643 LFKVCHPKISYD--ELRRATGNFSHENLIGSGSFGSVLHNERTGSWKS------------ 688
              V H  +  D   L     +      IG G+FG V      G  ++            
Sbjct: 96  SGVVLHRAVPKDKWVLNHE--DLVLGEQIGRGNFGEVFS----GRLRADNTLVAVKSCRE 149

Query: 689 ---------FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH 739
                    F+ E   L+   H N+V+LI  C+       + + +V E +  G    ++ 
Sbjct: 150 TLPPDLKAKFLQEARILKQYSHPNIVRLIGVCT-----QKQPIYIVMELVQGGDFLTFLR 204

Query: 740 GERKNE---------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            E              D  + ++YL        +H DL   N L+ E+   K+ DFG++R
Sbjct: 205 TEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLKISDFGMSR 261

Query: 791 FLLE 794
              +
Sbjct: 262 EEAD 265

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 84.7 bits (210), Expect = 8e-18
 Identities = 40/161 (24%), Positives = 62/161 (38%), Gaps = 35/161 (21%)

Query: 666 ENLIGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
            + +G G+FGSV                    L +      + F  E + L+ +    +V
Sbjct: 28  ISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIV 87

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYLH 756
           K          +++    LV E+L +G L D++   R       L      I   ++YL 
Sbjct: 88  KYRGVSYGPGRQSL---RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLG 144

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                  VH DL   NIL++ E   K+ DFGLA+ L    D
Sbjct: 145 ---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD 182

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 86.5 bits (214), Expect = 1e-17
 Identities = 58/209 (27%), Positives = 86/209 (41%), Gaps = 53/209 (25%)

Query: 666 ENLIGSGSFGSVLHNERTGSWK------------------SFIAECETLRNVRHRNLVKL 707
           E  +G G FG V      G+W                   +F+ E + ++ +RH  LV+L
Sbjct: 272 EVKLGQGCFGEVWM----GTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQL 327

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
               S       E + +V E++S GSL D++ GE    L           I S + Y+  
Sbjct: 328 YAVVSE------EPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVE- 380

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
              +  VH DL+  NIL+ E +  KV DFGLAR +    DN+ +      F   I +  P
Sbjct: 381 --RMNYVHRDLRAANILVGENLVCKVADFGLARLIE---DNEYTARQGAKFP--IKWTAP 433

Query: 818 EYGLGERPSTAGDVPTSESFAGEFNIVKW 846
           E  L  R +   DV +       F I+  
Sbjct: 434 EAALYGRFTIKSDVWS-------FGILLT 455

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 35/161 (21%)

Query: 666 ENLIGSGSFGSV--------------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
              +G G+FGSV                    L +      + F  E E L++++H N+V
Sbjct: 46  LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIV 105

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYLH 756
           K    C S   +N+    L+ E+L  GSL D++   ++     +L      I   ++YL 
Sbjct: 106 KYKGVCYSAGRRNL---KLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLG 162

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                  +H DL   NIL++ E   K+GDFGL + L +  +
Sbjct: 163 ---TKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE 200

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 84.3 bits (209), Expect = 1e-17
 Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 40/160 (25%)

Query: 669 IGSGSFGSV------LHNERTG---------------SWKSFIAECETLRNVRHRNLVKL 707
           +G G FG V        N+ TG                   +  E + LR + H +++K 
Sbjct: 39  LGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKY 98

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHN 757
              C    + ++    LV E++  GSL D++    ++ +           I   + YLH 
Sbjct: 99  KGCCEDAGAASL---QLVMEYVPLGSLRDYL---PRHSIGLAQLLLFAQQICEGMAYLH- 151

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                 +H DL   N+LLD +   K+GDFGLA+ + E  +
Sbjct: 152 --AQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHE 189

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 39/184 (21%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSW-------KSFI----------AECETLRNVRHR 702
           +F    ++G GSF +V+      T          K  I           E + +  + H 
Sbjct: 31  DFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHP 90

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDY 754
             VKL  +      ++ E L     +  NG L  +I      +          I SAL+Y
Sbjct: 91  FFVKLYFTF-----QDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEY 145

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH      ++H DLKP NILL+E+M  ++ DFG A+     +  +S  +  + F+G+  Y
Sbjct: 146 LH---GKGIIHRDLKPENILLNEDMHIQITDFGTAK----VLSPESKQARANSFVGTAQY 198

Query: 815 VPPE 818
           V PE
Sbjct: 199 VSPE 202

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 83.0 bits (206), Expect = 1e-17
 Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 43/158 (27%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------FIAECETLRNVRHRNLVKL 707
              +GSG FG V      G WK                   F  E +T+  + H  LVK 
Sbjct: 13  LKELGSGQFGVVKL----GKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKF 68

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYL--H 756
              CS         + +V E++SNG L +++    K     +L     D+   + +L  H
Sbjct: 69  YGVCS-----KEYPIYIVTEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH 123

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                  +H DL   N L+D ++  KV DFG+ R++L+
Sbjct: 124 Q-----FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLD 156

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 84.5 bits (209), Expect = 1e-17
 Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 29/190 (15%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIP--ISFGNFQSLLSIDLSNNRINGNIPKGI 469
            +P  +P+  A L      DLS N L+  +    +     +L S+ LS+N +N  I    
Sbjct: 32  NVPQSLPSYTALL------DLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEA 83

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK 529
             P+P       N+  +DLS N L         + ++LE LL+  N       N   ++ 
Sbjct: 84  FVPVP-------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136

Query: 530 GLEVLDLSSNKLSGSIP----SDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN----- 580
            L+ L LS N++S   P     D   L  L  L+L+ N L+ +       + +       
Sbjct: 137 QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL--PLTDLQKLPAWVKNG 193

Query: 581 VHLKGNPKLC 590
           ++L  NP  C
Sbjct: 194 LYLHNNPLEC 203

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 77.2 bits (190), Expect = 4e-15
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 12/148 (8%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
            L+ L S+ L +N L+  +  E    +  LR L++S N+L   L   + S L  L++L L
Sbjct: 62  RLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
             N I   V  +   ++  LQ L   +N +    P  +      D ++L  L +LDL+ N
Sbjct: 120 YNNHIV-VVDRNAFEDMAQLQKLYLSQNQI-SRFPVELI----KDGNKLPKLMLLDLSSN 173

Query: 211 RLAGTVPSTIYNMTSLVH--LRLASNQL 236
           +L     + +  + + V   L L +N L
Sbjct: 174 KLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 51/198 (25%), Positives = 76/198 (38%), Gaps = 34/198 (17%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEI--GQLQGLQVLGLAGNEIPGGIPNSLANLKK 426
           +P S+       LLDLS+N++S  +  E    +L  L  L L+ N +      +   +  
Sbjct: 33  VPQSL--PSYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 427 LNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI 486
           L  +DLS N L       F + Q+L  + L NN I   + +     +         +  +
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMA-------QLQKL 141

Query: 487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP 546
            LS N +S   P  L                         +L  L +LDLSSNKL     
Sbjct: 142 YLSQNQIS-RFPVEL---------------IKD-----GNKLPKLMLLDLSSNKLKKLPL 180

Query: 547 SDLQNLQALRSLNLTFNN 564
           +DLQ L A     L  +N
Sbjct: 181 TDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 67.6 bits (165), Expect = 5e-12
 Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 24/181 (13%)

Query: 110 NLPREIGNLFRLRVLNISFNNLQGELPVNI--SKLTELKMLDLMANKITGRVTDDQLRNL 167
           +LP          +L++S NNL   L      ++LT L  L L  N +   ++ +    +
Sbjct: 36  SLPSYT------ALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPV 87

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV 227
            +L+ L+   N L  ++   +        S L+ L+VL L  N +     +   +M  L 
Sbjct: 88  PNLRYLDLSSNHL-HTLDEFL-------FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 228 HLRLASNQLGGEIPYDV---RDTLPNLLDFIYCFNRFTGKIPGSLHNLTNI--QIIRMTH 282
            L L+ NQ+    P ++    + LP L+      N+        L  L       + + +
Sbjct: 140 KLYLSQNQI-SRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

Query: 283 N 283
           N
Sbjct: 199 N 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 1e-09
 Identities = 37/198 (18%), Positives = 63/198 (31%), Gaps = 39/198 (19%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTI-YNMTSLVHLRLASNQLGGEIPYDVRDTLPN 250
           +P  L       +LDL+ N L+          +T+L  L L+ N L   I          
Sbjct: 33  VPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FIS--------- 80

Query: 251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKI 309
                            +   + N++ + ++ N L  TL      +L  L    +  N I
Sbjct: 81  ---------------SEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124

Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYG 367
           V    +       +  +   L  L L  NQ      E I + +   +L  L L  N +  
Sbjct: 125 VVVDRN-------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177

Query: 368 KIPASIGRLRSLTLLDLS 385
                + +L +     L 
Sbjct: 178 LPLTDLQKLPAWVKNGLY 195

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 36/157 (22%)

Query: 666 ENLIGSGSFGSV------LHNERTG---------------SWKSFIAECETLRNVRHRNL 704
              +G G FG V         + TG                      E E LRN+ H N+
Sbjct: 26  IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENI 85

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDYL 755
           VK    C+      +    L+ EFL +GSL +++   +      +       I   +DYL
Sbjct: 86  VKYKGICTEDGGNGI---KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYL 142

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                   VH DL   N+L++ E   K+GDFGL + +
Sbjct: 143 G---SRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 176

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 84.0 bits (208), Expect = 2e-17
 Identities = 45/200 (22%), Positives = 72/200 (36%), Gaps = 35/200 (17%)

Query: 655 ELRRATGNFSHENLIGSGSFGSVLH--NERTGSWKSFIA------------ECETLRNVR 700
           E R      +H+  +G GSFG V    +++TG      A            E      + 
Sbjct: 52  EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGF---QCAVKKVRLEVFRVEELVACAGLS 108

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-------LDITSAL 752
              +V L  +           + +  E L  GSLG  I       E             L
Sbjct: 109 SPRIVPLYGAVREGPW-----VNIFMELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGL 163

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           +YLH      ++H D+K  N+LL  +   A + DFG A   L+      S+ +     G+
Sbjct: 164 EYLHTRR---ILHGDVKADNVLLSSDGSRAALCDFGHAL-CLQPDGLGKSLLTGDYIPGT 219

Query: 812 IGYVPPEYGLGERPSTAGDV 831
             ++ PE  +G+      D+
Sbjct: 220 ETHMAPEVVMGKPCDAKVDI 239

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 43/159 (27%), Positives = 61/159 (38%), Gaps = 45/159 (28%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------FIAECETLRNVRHRNLVKL 707
              IGSG FG V      G W +                  FI E E +  + H  LV+L
Sbjct: 13  VQEIGSGQFGLVHL----GYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQL 68

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYL-- 755
              C          + LV EF+ +G L D++   ++             D+   + YL  
Sbjct: 69  YGVCL-----EQAPICLVTEFMEHGCLSDYLR-TQRGLFAAETLLGMCLDVCEGMAYLEE 122

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                  V+H DL   N L+ E    KV DFG+ RF+L+
Sbjct: 123 AC-----VIHRDLAARNCLVGENQVIKVSDFGMTRFVLD 156

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 82.6 bits (205), Expect = 2e-17
 Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 43/185 (23%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECETLRNVRH 701
            +F     +G G FG+V     +++          K+ +           E E   ++RH
Sbjct: 9   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 68

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALD 753
            N+++L             +L L  E+   G++   +    K +E         + +AL 
Sbjct: 69  PNILRLYGY---FHDATRVYLIL--EYAPLGTVYRELQKLSKFDEQRTATYITELANALS 123

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           Y H+     V+H D+KP N+LL      K+ DFG +      V   SS  +     G++ 
Sbjct: 124 YCHSKR---VIHRDIKPENLLLGSAGELKIADFGWS------VHAPSSRRTD--LCGTLD 172

Query: 814 YVPPE 818
           Y+PPE
Sbjct: 173 YLPPE 177

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 84.5 bits (209), Expect = 2e-17
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 41/179 (22%)

Query: 667 NLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL--VKL 707
             IGSG    V                 L      +  S+  E   L  ++  +   ++L
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHNDC 759
                       +++ +V E   N  L  W+  ++  +  +       +  A+  +H   
Sbjct: 122 YDYE-----ITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG 175

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              +VHSDLKP N L+  +   K+ DFG+A  +  + D  S +  +   +G++ Y+PPE
Sbjct: 176 ---IVHSDLKPANFLIV-DGMLKLIDFGIANQM--QPDTTSVVKDS--QVGAVNYMPPE 226

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 83.6 bits (207), Expect = 3e-17
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 41/179 (22%)

Query: 667 NLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL--VKL 707
             IGSG    V                 L      +  S+  E   L  ++  +   ++L
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHNDC 759
                       +++ +V E   N  L  W+  ++  +  +       +  A+  +H   
Sbjct: 75  YDY-----EITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHG 128

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              +VHSDLKP N L+ + M  K+ DFG+A  +     + +S+      +G++ Y+PPE
Sbjct: 129 ---IVHSDLKPANFLIVDGM-LKLIDFGIANQM---QPDTTSVVKDS-QVGTVNYMPPE 179

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 56/186 (30%), Positives = 82/186 (44%), Gaps = 44/186 (23%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECETLRNVRH 701
           G++   + +G G+FG V    ++ TG         +  I           E + L+  RH
Sbjct: 11  GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRH 70

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSAL 752
            +++KL      + +    F+  V E++S G L D+I  HG R  E++       I SA+
Sbjct: 71  PHIIKLYQV---ISTPTDFFM--VMEYVSGGELFDYICKHG-RVEEMEARRLFQQILSAV 124

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           DY H      VVH DLKP N+LLD  M AK+ DFGL+   +                GS 
Sbjct: 125 DYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSN--MMSDGEF-----LRTSCGSP 174

Query: 813 GYVPPE 818
            Y  PE
Sbjct: 175 NYAAPE 180

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 81.5 bits (202), Expect = 4e-17
 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA--------ECETLRNVRHRN 703
            ++     +G G++G V    N  T                       E    + + H N
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDY 754
           +VK           N+++L L  E+ S G L D I        E D       + + + Y
Sbjct: 67  VVKFYGH---RREGNIQYLFL--EYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVY 120

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH      + H D+KP N+LLDE    K+ DFGLA          +     +   G++ Y
Sbjct: 121 LHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF----RYNNRERLLNKMCGTLPY 173

Query: 815 VPPE 818
           V PE
Sbjct: 174 VAPE 177

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 81.9 bits (203), Expect = 5e-17
 Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 40/160 (25%)

Query: 666 ENLIGSGSFGSVLH------------------NERTG--SWKSFIAECETLRNVRHRNLV 705
           + +IG G FG V H                  +  T     ++F+ E   +R + H N++
Sbjct: 26  DRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVL 85

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYL- 755
            LI      +        ++  ++ +G L  +I   ++N          L +   ++YL 
Sbjct: 86  ALIGIMLPPEGLPH----VLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLA 141

Query: 756 -HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                    VH DL   N +LDE  T KV DFGLAR +L+
Sbjct: 142 EQK-----FVHRDLAARNCMLDESFTVKVADFGLARDILD 176

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 82.4 bits (204), Expect = 5e-17
 Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 30/167 (17%)

Query: 650 KISYDELRRATGNFSHENLIGSGSFGSVL--HNERTGS-------------WKSFIAECE 694
           +I    LR   G F    L+G+G++G V    + +TG               +    E  
Sbjct: 13  EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEIN 72

Query: 695 TLRNV-RHRNLVKLITSCSSLDSKNMEF-LALVYEFLSNGSLGDWIHGERKNELD----- 747
            L+    HRN+     +    +   M+  L LV EF   GS+ D I   + N L      
Sbjct: 73  MLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIA 132

Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
                I   L +LH      V+H D+K  N+LL E    K+ DFG++
Sbjct: 133 YICREILRGLSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVS 176

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 82.5 bits (204), Expect = 5e-17
 Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 52/193 (26%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGS-------WKSFIA---------------ECETL 696
             +S  + +GSG+FG V    ++            K  +                E   L
Sbjct: 24  QKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAIL 83

Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGS-LGDWIHGERKNELD-------- 747
             V H N++K++      +++      LV E   +G  L  +I  +R   LD        
Sbjct: 84  SRVEHANIIKVLD---IFENQGFFQ--LVMEKHGSGLDLFAFI--DRHPRLDEPLASYIF 136

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
             + SA+ YL       ++H D+K  NI++ E+ T K+ DFG A +L             
Sbjct: 137 RQLVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAAYLERG-------KLF 186

Query: 806 HVFMGSIGYVPPE 818
           + F G+I Y  PE
Sbjct: 187 YTFCGTIEYCAPE 199

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 82.3 bits (204), Expect = 5e-17
 Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 47/174 (27%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGS---------------------WKSFIAECETL 696
                L     +G G FGSV+                             + F++E   +
Sbjct: 31  IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACM 90

Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE----------- 745
           ++  H N+++L+  C  + S+ +    ++  F+  G L  ++   R              
Sbjct: 91  KDFSHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLL 150

Query: 746 ---LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
              +DI   ++YL   N      +H DL   N +L ++MT  V DFGL++ +  
Sbjct: 151 KFMVDIALGMEYLSNRN-----FLHRDLAARNCMLRDDMTVCVADFGLSKKIYS 199

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 82.0 bits (203), Expect = 6e-17
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 43/185 (23%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA---------ECETLRNVRHR 702
           GN+     IG G+F  V    +  TG         K+ +          E   ++ + H 
Sbjct: 15  GNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHP 74

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALD 753
           N+VKL      ++++   +L  + E+ S G + D++  HG R  E +       I SA+ 
Sbjct: 75  NIVKLFEV---IETEKTLYL--IMEYASGGEVFDYLVAHG-RMKEKEARSKFRQIVSAVQ 128

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           Y H      +VH DLK  N+LLD +M  K+ DFG +                  F G+  
Sbjct: 129 YCHQKR---IVHRDLKAENLLLDADMNIKIADFGFSNEF-----TVGGKLDA--FCGAPP 178

Query: 814 YVPPE 818
           Y  PE
Sbjct: 179 YAAPE 183

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 81.1 bits (201), Expect = 6e-17
 Identities = 41/175 (23%), Positives = 76/175 (43%), Gaps = 47/175 (26%)

Query: 651 ISYD--ELRRATGNFSHENLIGSGSFGSVLHNERTGSWKS------------------FI 690
           + Y   E+     + +    +G+G FG V +    G W+                   FI
Sbjct: 14  LGYGSWEIDPK--DLTFLKELGTGQFGVVKY----GKWRGQYDVAIKMIKEGSMSEDEFI 67

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL 746
            E + + N+ H  LV+L   C+         + ++ E+++NG L +++   R      +L
Sbjct: 68  EEAKVMMNLSHEKLVQLYGVCT-----KQRPIFIITEYMANGCLLNYLREMRHRFQTQQL 122

Query: 747 -----DITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
                D+  A++YL          +H DL   N L++++   KV DFGL+R++L+
Sbjct: 123 LEMCKDVCEAMEYLESKQ-----FLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD 172

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 81.5 bits (202), Expect = 7e-17
 Identities = 40/162 (24%), Positives = 63/162 (38%), Gaps = 44/162 (27%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
             +IG G FG V H    G+                           F+ E   +++  H
Sbjct: 30  NEVIGRGHFGCVYH----GTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 85

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSAL 752
            N++ L+  C   +   +    +V  ++ +G L ++I  E  N          L +   +
Sbjct: 86  PNVLSLLGICLRSEGSPL----VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 141

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            YL        VH DL   N +LDE+ T KV DFGLAR + +
Sbjct: 142 KYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 180

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 81.2 bits (201), Expect = 9e-17
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 19/134 (14%)

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----- 746
           E   L+ + H N+VKL+     LD  N + L +V+E ++ G + +    +  +E      
Sbjct: 86  EIAILKKLDHPNVVKLVEV---LDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFY 142

Query: 747 --DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
             D+   ++YLH      ++H D+KP N+L+ E+   K+ DFG++         + S + 
Sbjct: 143 FQDLIKGIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEF------KGSDAL 193

Query: 805 THVFMGSIGYVPPE 818
               +G+  ++ PE
Sbjct: 194 LSNTVGTPAFMAPE 207

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 81.5 bits (202), Expect = 9e-17
 Identities = 35/179 (19%), Positives = 66/179 (36%), Gaps = 54/179 (30%)

Query: 648 HPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTGSWKS------------------- 688
              +   E ++         ++GSG+FG+V      G W                     
Sbjct: 9   LRILKETEFKK-------IKVLGSGAFGTV----YKGLWIPEGEKVKIPVAIKELREATS 57

Query: 689 ------FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
                  + E   + +V + ++ +L+  C +        + L+ + +  G L D++   +
Sbjct: 58  PKANKEILDEAYVMASVDNPHVCRLLGICLT------STVQLITQLMPFGCLLDYVREHK 111

Query: 743 KN----EL-----DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
            N     L      I   ++YL    +  +VH DL   N+L+      K+ DFGLA+ L
Sbjct: 112 DNIGSQYLLNWCVQIAKGMNYLE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 39/184 (21%), Positives = 70/184 (38%), Gaps = 55/184 (29%)

Query: 651 ISYDELRRATGNFSHENL------IGSGSFGSVLHNERTGSWKS---------------- 688
           ++ +E+R        + L      +GSG+FG+V    + G ++                 
Sbjct: 1   MALEEIRPKEVYLDRKLLTLEDKELGSGNFGTV----KKGYYQMKKVVKTVAVKILKNEA 56

Query: 689 --------FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
                    +AE   ++ + +  +V++I  C +      E   LV E    G L  ++  
Sbjct: 57  NDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVMEMAELGPLNKYLQQ 110

Query: 741 ERK---NEL-----DITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            R      +      ++  + YL   N      VH DL   N+LL  +  AK+ DFGL++
Sbjct: 111 NRHVKDKNIIELVHQVSMGMKYLEESN-----FVHRDLAARNVLLVTQHYAKISDFGLSK 165

Query: 791 FLLE 794
            L  
Sbjct: 166 ALRA 169

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 41/169 (24%), Positives = 60/169 (35%), Gaps = 52/169 (30%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS--------------------------FIAECETLRNV 699
              +G GSFG V    R G W +                          FI E   + ++
Sbjct: 23  LEKLGDGSFGVV----RRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 78

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITS 750
            HRNL++L     +        + +V E    GSL D +   + +     L      +  
Sbjct: 79  DHRNLIRLYGVVLT------PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 132

Query: 751 ALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
            + YL          +H DL   N+LL      K+GDFGL R L +  D
Sbjct: 133 GMGYLESKR-----FIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDD 176

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 80.4 bits (199), Expect = 1e-16
 Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 49/163 (30%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS-----------------------FIAECETLRNVRHR 702
           +  +G G+FGSV    R G ++                         + E + +  + + 
Sbjct: 15  DIELGCGNFGSV----RQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNP 70

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALD 753
            +V+LI  C +      E L LV E    G L  ++ G+R+      +      ++  + 
Sbjct: 71  YIVRLIGVCQA------EALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMK 124

Query: 754 YL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           YL   N      VH DL   N+LL     AK+ DFGL++ L  
Sbjct: 125 YLEEKN-----FVHRDLAARNVLLVNRHYAKISDFGLSKALGA 162

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 55/170 (32%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
           E +IGSG  G V +    G  +                         F++E   +    H
Sbjct: 54  EKIIGSGDSGEVCY----GRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDH 109

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDIT 749
            N+++L    +           +V E++ NGSL  ++   R ++              + 
Sbjct: 110 PNIIRLEGVVT-----RGRLAMIVTEYMENGSLDTFL---RTHDGQFTIMQLVGMLRGVG 161

Query: 750 SALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
           + + YL          VH DL   N+L+D  +  KV DFGL+R L +  D
Sbjct: 162 AGMRYLSDLG-----YVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPD 206

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 80.8 bits (200), Expect = 2e-16
 Identities = 45/184 (24%), Positives = 68/184 (36%), Gaps = 39/184 (21%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA--------ECETLRNVRHRN 703
            ++     +G G++G V    N  T                       E    + + H N
Sbjct: 7   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 66

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDY 754
           +VK           N+++L L  E+ S G L D I        E D       + + + Y
Sbjct: 67  VVKFYGH---RREGNIQYLFL--EYCSGGELFDRIEPDI-GMPEPDAQRFFHQLMAGVVY 120

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH      + H D+KP N+LLDE    K+ DFGLA          +     +   G++ Y
Sbjct: 121 LHGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF----RYNNRERLLNKMCGTLPY 173

Query: 815 VPPE 818
           V PE
Sbjct: 174 VAPE 177

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 81.0 bits (200), Expect = 2e-16
 Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 44/162 (27%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
             +IG G FG V H    G+                           F+ E   +++  H
Sbjct: 94  NEVIGRGHFGCVYH----GTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 149

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSAL 752
            N++ L+  C   +   +    +V  ++ +G L ++I  E  N          L +   +
Sbjct: 150 PNVLSLLGICLRSEGSPL----VVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 205

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            +L        VH DL   N +LDE+ T KV DFGLAR + +
Sbjct: 206 KFLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD 244

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 81.8 bits (202), Expect = 2e-16
 Identities = 42/214 (19%), Positives = 74/214 (34%), Gaps = 52/214 (24%)

Query: 663 FSHENLIGSGSFGSV-LHNERTGSW---KSFIAECETL---------RNVRHRNLVKLIT 709
              E ++G GS G+V       G     K  + +   +          +  H N+++   
Sbjct: 17  VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYC 76

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------LDITSALDY 754
           S ++       FL +  E L N +L D +  +  ++                 I S + +
Sbjct: 77  SETT-----DRFLYIALE-LCNLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAH 130

Query: 755 LHNDCEVPVVHSDLKPGNILLD-------------EEMTAKVGDFGLARFLLERVDNQSS 801
           LH+     ++H DLKP NIL+              E +   + DFGL + L       S 
Sbjct: 131 LHSLK---IIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDS--GQSSF 185

Query: 802 ISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSE 835
            ++ +   G+ G+  PE              T  
Sbjct: 186 RTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS 219

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 78.9 bits (195), Expect = 3e-16
 Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 24/220 (10%)

Query: 346 ESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV 405
                 +N   K  LG   +      S   L  +   +   ++I     ++      L+ 
Sbjct: 13  FPDPGLAN-AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQ--FFTNLKE 67

Query: 406 LGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNI 465
           L L+ N+I   +   L +L KL ++ ++ N L     ++      L  + L NN +    
Sbjct: 68  LHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNELRD-- 120

Query: 466 PKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIV 525
                    + +  L+N+  + + +N L  ++   L     LE L +  N+ +      +
Sbjct: 121 --------TDSLIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGG--L 168

Query: 526 AELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
             LK +  +DL+  K           L    ++       
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 43/230 (18%), Positives = 75/230 (32%), Gaps = 31/230 (13%)

Query: 292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF 351
               L      N+G   +           + S    + +     D +  +  +   +  F
Sbjct: 14  PDPGLANAVKQNLGKQSVTD---------LVSQKELSGVQNFNGDNSNIQ-SL-AGMQFF 62

Query: 352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN 411
           +N L +L+L  N I   +   +  L  L  L ++ N +     +       L  L L  N
Sbjct: 63  TN-LKELHLSHNQI-SDLSP-LKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNN 116

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
           E+     +SL +LK L  + +  N+L   I    G    L  +DL  N I  N       
Sbjct: 117 ELRD--TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NT------ 165

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI 521
                ++RL+ V  IDL+                    +     ++  P 
Sbjct: 166 ---GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 34/167 (20%), Positives = 63/167 (37%), Gaps = 20/167 (11%)

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
              L    + +L    +T  +         + + +  N+ I  ++           +   
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVSQK--ELSGVQNFNGDNSNIQ-SL---------AGMQFF 62

Query: 481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
            N+  + LS N +S +L   LK+   LEEL +  N+    +  I      L  L L +N+
Sbjct: 63  TNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN-LNGI--PSACLSRLFLDNNE 117

Query: 541 LSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP 587
           L       L +L+ L  L++  N L+ +V        +  + L GN 
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLKSIVMLGF-LSKLEVLDLHGNE 161

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 38/201 (18%), Positives = 71/201 (35%), Gaps = 24/201 (11%)

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
             I+   P     L       L    +      S   L  +   +   + +     +   
Sbjct: 7   TPINQVFPDP--GLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAGMQ-- 60

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
            F +L  + LS+N+I+ ++           +  L  +  + ++ N L  NL   + +   
Sbjct: 61  FFTNLKELHLSHNQIS-DL---------SPLKDLTKLEELSVNRNRLK-NLNG-IPSAC- 107

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
           L  L +  N+        +  LK LE+L + +NKL  SI   L  L  L  L+L  N + 
Sbjct: 108 LSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SI-VMLGFLSKLEVLDLHGNEIT 163

Query: 567 GVVPSEGIFRNMSNVHLKGNP 587
                    + ++ + L G  
Sbjct: 164 NTGGLTR-LKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 32/202 (15%)

Query: 138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLS 197
               L      +L    +T  V+    + L  +Q  N   +         I +L  + + 
Sbjct: 14  PDPGLANAVKQNLGKQSVTDLVS---QKELSGVQNFNGDNSN--------IQSL--AGMQ 60

Query: 198 RLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC 257
              NLK L L+ N++  +  S + ++T L  L +  N+L   +          L      
Sbjct: 61  FFTNLKELHLSHNQI--SDLSPLKDLTKLEELSVNRNRL-KNLNG---IPSACLSRLFLD 114

Query: 258 FNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEG 317
            N         L +L N++I+ + +N L+      LG L  L   ++  N+I +      
Sbjct: 115 NNELR-DTDS-LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN------ 164

Query: 318 LSFITSLTNSTHLNYLALDGNQ 339
                 LT    +N++ L G +
Sbjct: 165 ---TGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.8 bits (122), Expect = 7e-07
 Identities = 35/156 (22%), Positives = 60/156 (38%), Gaps = 22/156 (14%)

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
            +SP + +L+ L  + +  N+L  NL         L  L +  N L+     ++  L  L
Sbjct: 77  DLSP-LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNELRD--TDSLIHLKNL 130

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
           ++L +  NK+    +   L  L  L+VL+   N         I N     L+RL+ +  +
Sbjct: 131 EILSIRNNKLK---SIVMLGFLSKLEVLDLHGN--------EITNT--GGLTRLKKVNWI 177

Query: 206 DLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP 241
           DLT  +    V   +     L       +  G  I 
Sbjct: 178 DLTGQKC---VNEPVKYQPELYITNTVKDPDGRWIS 210

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 37/161 (22%), Positives = 57/161 (35%), Gaps = 47/161 (29%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS-------------------------FIAECETLRNVR 700
             ++GSG FG+V      G W                                  + ++ 
Sbjct: 18  LKVLGSGVFGTVHK----GVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLD 73

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSA 751
           H ++V+L+  C          L LV ++L  GSL D +   R            + I   
Sbjct: 74  HAHIVRLLGLCPG------SSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKG 127

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           + YL    E  +VH +L   N+LL      +V DFG+A  L
Sbjct: 128 MYYLE---EHGMVHRNLAARNVLLKSPSQVQVADFGVADLL 165

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 80.5 bits (199), Expect = 3e-16
 Identities = 48/184 (26%), Positives = 72/184 (39%), Gaps = 42/184 (22%)

Query: 662 NFSHENLIGSGSFGSVLH--NERTGSW--------------KSFIAECETLRNVRHRNLV 705
             S   ++G G FG V       TG                +    E   +  + H NL+
Sbjct: 90  TVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLI 149

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDYLH 756
           +L     + +SKN   + LV E++  G L D I        ELD       I   + ++H
Sbjct: 150 QLY---DAFESKN--DIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMH 204

Query: 757 NDCEVPVVHSDLKPGNILL--DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
              ++ ++H DLKP NIL    +    K+ DFGLAR    R           V  G+  +
Sbjct: 205 ---QMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR-------EKLKVNFGTPEF 254

Query: 815 VPPE 818
           + PE
Sbjct: 255 LAPE 258

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 81.9 bits (202), Expect = 4e-16
 Identities = 43/187 (22%), Positives = 71/187 (37%), Gaps = 55/187 (29%)

Query: 648 HPKISYDELRRATGNFSHENL------IGSGSFGSVLHNERTGSWKS------------- 688
            P    +EL+        +NL      +G G+FGSV    R G ++              
Sbjct: 317 SPFSDPEELKDKKLFLKRDNLLIADIELGCGNFGSV----RQGVYRMRKKQIDVAIKVLK 372

Query: 689 ----------FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI 738
                      + E + +  + +  +V+LI  C +      E L LV E    G L  ++
Sbjct: 373 QGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEMAGGGPLHKFL 426

Query: 739 HGERKN----EL-----DITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG 787
            G+R+      +      ++  + YL   N      VH +L   N+LL     AK+ DFG
Sbjct: 427 VGKREEIPVSNVAELLHQVSMGMKYLEEKN-----FVHRNLAARNVLLVNRHYAKISDFG 481

Query: 788 LARFLLE 794
           L++ L  
Sbjct: 482 LSKALGA 488

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 79.6 bits (197), Expect = 4e-16
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 41/176 (23%)

Query: 669 IGSGSFGSVLHNERTGSWKSFIA---------------ECETLRNVRHRNLVKLITSCSS 713
           +G G FG V     T S K+++A               E   L   RHRN++ L  S  S
Sbjct: 13  LGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES 72

Query: 714 LDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDYLHNDCEVPVV 764
                ME L +++EF+S   + + I       NE +       +  AL +LH      + 
Sbjct: 73  -----MEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLH---SHNIG 124

Query: 765 HSDLKPGNILL--DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           H D++P NI+       T K+ +FG AR L           +  +   +  Y  PE
Sbjct: 125 HFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG-------DNFRLLFTAPEYYAPE 173

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 81.8 bits (202), Expect = 4e-16
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 42/177 (23%)

Query: 669 IGSGSFGSVLHNERTGSWKSFIA----------------ECETLRNVRHRNLVKLITSCS 712
           +G+G+FG V       +  +F A                E +T+  +RH  LV L  +  
Sbjct: 165 LGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFE 224

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELD-------ITSALDYLHNDCEVPV 763
                    + ++YEF+S G L + +  E    +E +       +   L ++H   E   
Sbjct: 225 D-----DNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH---ENNY 276

Query: 764 VHSDLKPGNILL--DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           VH DLKP NI+         K+ DFGL   L  +        S  V  G+  +  PE
Sbjct: 277 VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK-------QSVKVTTGTAEFAAPE 326

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 37/169 (21%), Positives = 63/169 (37%), Gaps = 44/169 (26%)

Query: 663 FSHENL-----IGSGSFGSVLH---NERTGSW------------------KSFIAECETL 696
              +       +G G FGSV      +  GS+                  + F+ E   +
Sbjct: 20  IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACM 79

Query: 697 RNVRHRNLVKLITSCSSLDSKNMEFLAL-VYEFLSNGSLGDWIHGERKNE---------- 745
           +   H ++ KL+       +K    + + +  F+ +G L  ++   R  E          
Sbjct: 80  KEFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTL 139

Query: 746 ----LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
               +DI   ++YL        +H DL   N +L E+MT  V DFGL+R
Sbjct: 140 VRFMVDIACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSR 185

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 78.9 bits (195), Expect = 6e-16
 Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 48/196 (24%)

Query: 660 TGNFSH-----ENLIGSGSFGSVLH--NERTG--------------SWKSFIAECETLRN 698
           +G F       E+++G G+   V    N  T                      E E L  
Sbjct: 7   SGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQ 66

Query: 699 VR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELD-------I 748
            + HRN+++LI        +  +   LV+E +  GS+   IH +R+  NEL+       +
Sbjct: 67  CQGHRNVLELIEFF-----EEEDRFYLVFEKMRGGSILSHIH-KRRHFNELEASVVVQDV 120

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISST 805
            SALD+LHN     + H DLKP NIL    ++    K+ DF L   +  +++   S  ST
Sbjct: 121 ASALDFLHNKG---IAHRDLKPENILCEHPNQVSPVKICDFDLGSGI--KLNGDCSPIST 175

Query: 806 HVFM---GSIGYVPPE 818
              +   GS  Y+ PE
Sbjct: 176 PELLTPCGSAEYMAPE 191

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 80.6 bits (199), Expect = 6e-16
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 54/191 (28%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECETLRNVRH 701
           G++   + +G G+FG V    +E TG         +  I           E + L+  RH
Sbjct: 16  GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRH 75

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSAL 752
            +++KL      + + +  F+  V E++S G L D+I  +G R +E +       I S +
Sbjct: 76  PHIIKLYQV---ISTPSDIFM--VMEYVSGGELFDYICKNG-RLDEKESRRLFQQILSGV 129

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF-----LLERVDNQSSISSTHV 807
           DY H      VVH DLKP N+LLD  M AK+ DFGL+        L              
Sbjct: 130 DYCHRHM---VVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFL------------RT 174

Query: 808 FMGSIGYVPPE 818
             GS  Y  PE
Sbjct: 175 SCGSPNYAAPE 185

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 78.0 bits (193), Expect = 7e-16
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 50/164 (30%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
             ++G G FG V      G + +                        F++E   ++N+ H
Sbjct: 17  NRILGEGFFGEVYE----GVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDH 72

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSAL 752
            ++VKLI           E   ++ E    G LG ++   + +     L      I  A+
Sbjct: 73  PHIVKLIGIIEE------EPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAM 126

Query: 753 DYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            YL   N      VH D+   NIL+      K+GDFGL+R++ +
Sbjct: 127 AYLESIN-----CVHRDIAVRNILVASPECVKLGDFGLSRYIED 165

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 79.4 bits (196), Expect = 9e-16
 Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 46/223 (20%)

Query: 627 PIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSH----ENLIGSGSFGSVLHNER 682
            +  +    K       ++    K     +    G+          +GSG+FG V     
Sbjct: 13  KVRGKYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSVYDYYDILEELGSGAFGVVHRCVE 72

Query: 683 TGSWKSFIA----------------ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY 726
             + + F+A                E   +  + H  L+ L  +           + L+ 
Sbjct: 73  KATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEMVLIL 127

Query: 727 EFLSNGSLGDWI--HGERKNELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL-- 775
           EFLS G L D I     + +E +           L ++H   E  +VH D+KP NI+   
Sbjct: 128 EFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHSIVHLDIKPENIMCET 184

Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            +  + K+ DFGLA  L              V   +  +  PE
Sbjct: 185 KKASSVKIIDFGLATKLNPD-------EIVKVTTATAEFAAPE 220

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            I SALD  H        H D+KP NIL+  +  A + DFG+A            ++   
Sbjct: 142 QIGSALDAAH---AAGATHRDVKPENILVSADDFAYLVDFGIASAT-----TDEKLTQLG 193

Query: 807 VFMGSIGYVPPEYGLGERPSTAGDV 831
             +G++ Y+ PE       +   D+
Sbjct: 194 NTVGTLYYMAPERFSESHATYRADI 218

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 43/184 (23%), Positives = 66/184 (35%), Gaps = 49/184 (26%)

Query: 669 IGSGSFGSV----------------------LHNERTGSWKSFIAECETLRNVRHRNLVK 706
           +GSG F  V                        + R  S +    E   LR V H N++ 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVIT 79

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHND 758
           L     +        + L+ E +S G L D++  +   +E +       I   ++YLH  
Sbjct: 80  LHDVYEN-----RTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH-- 132

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
               + H DLKP NI+L          K+ DFGLA  + +               G+  +
Sbjct: 133 -TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG-------VEFKNIFGTPEF 184

Query: 815 VPPE 818
           V PE
Sbjct: 185 VAPE 188

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 42/184 (22%), Positives = 65/184 (35%), Gaps = 49/184 (26%)

Query: 669 IGSGSFGSV----------------------LHNERTGSWKSFIAECETLRNVRHRNLVK 706
           +GSG F  V                        + R    +    E   LR V H N++ 
Sbjct: 20  LGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIIT 79

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHND 758
           L     +        + L+ E +S G L D++  +   +E +       I   ++YLH  
Sbjct: 80  LHDVYEN-----RTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLH-- 132

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
               + H DLKP NI+L          K+ DFGLA  + +               G+  +
Sbjct: 133 -TKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDG-------VEFKNIFGTPEF 184

Query: 815 VPPE 818
           V PE
Sbjct: 185 VAPE 188

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 77.3 bits (191), Expect = 2e-15
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 16/116 (13%)

Query: 724 LVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCEVPVVHSDLKPGNILL 775
           LV E++   +L ++I       +D        I   + + H   ++ +VH D+KP NIL+
Sbjct: 88  LVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAH---DMRIVHRDIKPQNILI 144

Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           D   T K+ DFG+A+ L     +++S++ T+  +G++ Y  PE   GE      D+
Sbjct: 145 DSNKTLKIFDFGIAKAL-----SETSLTQTNHVLGTVQYFSPEQAKGEATDECTDI 195

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 79.8 bits (196), Expect = 2e-15
 Identities = 42/227 (18%), Positives = 79/227 (34%), Gaps = 19/227 (8%)

Query: 363 NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLA 422
                           L   +LS    +  +  E+   + LQ L       P      L 
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQEL------EPENKWCLLT 387

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN 482
            +  +  +D    E           F +L ++D        ++    L           +
Sbjct: 388 IILLMRALDPLLYEKET-----LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442

Query: 483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS 542
           V  + L+   L+  L + L+    +  L +++N+    +P  +A L+ LEVL  S N L 
Sbjct: 443 VRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALE 499

Query: 543 GSIPSDLQNLQALRSLNLTFNNLEGV--VPSEGIFRNMSNVHLKGNP 587
            ++   + NL  L+ L L  N L+    +        +  ++L+GN 
Sbjct: 500 -NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 73.6 bits (180), Expect = 1e-13
 Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 12/181 (6%)

Query: 26  INTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEG 85
           +  +KE L  F +  + +   +       S        +       RV  L+L+   L  
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV--LHLAHKDL-- 453

Query: 86  TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
           T+  H+  L  +  + L +N+L   LP  +  L  L VL  S N L+  +   ++ L  L
Sbjct: 454 TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
           + L L  N++        L +   L +LN   N L          +       L ++  +
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-----CQEEGIQERLAEMLPSVSSI 565

Query: 206 D 206
            
Sbjct: 566 L 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.7 bits (175), Expect = 6e-13
 Identities = 40/244 (16%), Positives = 81/244 (33%), Gaps = 25/244 (10%)

Query: 319 SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRS 378
            +         L    L   +    +   + +   EL +L          I   I  +R+
Sbjct: 340 CWCRDSATDEQLFRCELSVEKST-VLQSELESC-KELQELEPENKWCLLTI---ILLMRA 394

Query: 379 LTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT 438
           L  L     ++     ++         L    ++              +  + L+  +LT
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT 454

Query: 439 GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP 498
             +         +  +DLS+NR+         R LP  ++ L  +  +  SDN+L  N+ 
Sbjct: 455 -VLC-HLEQLLLVTHLDLSHNRL---------RALPPALAALRCLEVLQASDNALE-NVD 502

Query: 499 NSLKNCKSLEELLMAYNQFSG-PIPNIVAELKGLEVLDLSSNKLS------GSIPSDLQN 551
             + N   L+ELL+  N+         +     L +L+L  N L         +   L +
Sbjct: 503 G-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561

Query: 552 LQAL 555
           + ++
Sbjct: 562 VSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.4 bits (169), Expect = 2e-12
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 24/219 (10%)

Query: 288 TLPPGLGNLPFLRTYNIGFNKIVSS-GDDEGLSFITSLTNSTHLNYLALDGN----QFEG 342
                      L    +   K      + E    +  L        L +           
Sbjct: 340 CWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 343 KIPESIGNFSN-------ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPI 395
              E++  FS          + L    +    +          + +L L++  ++  +  
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC- 457

Query: 396 EIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID 455
            + QL  +  L L+ N +   +P +LA L+ L  +  S N L   +     N   L  + 
Sbjct: 458 HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELL 514

Query: 456 LSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           L NNR+  +          + +     +V ++L  NSL 
Sbjct: 515 LCNNRLQQS-------AAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 66.3 bits (161), Expect = 3e-11
 Identities = 50/326 (15%), Positives = 99/326 (30%), Gaps = 54/326 (16%)

Query: 49  LSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLS 108
           L   + +     W      N  + V   +L +  L   +  H   + +  S   +   L 
Sbjct: 275 LLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLL 334

Query: 109 ----GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL------------MA 152
                   R+     +L    +S       L   +    EL+ L+             M 
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 153 NKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL 212
                    + L+   +L+ ++  +      +                +++VL L    L
Sbjct: 394 ALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 213 AGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNL 272
             TV   +  +  + HL L+ N+L                            +P +L  L
Sbjct: 454 --TVLCHLEQLLLVTHLDLSHNRLR--------------------------ALPPALAAL 485

Query: 273 TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNY 332
             +++++ + N LE  +  G+ NLP L+   +  N++  S   + L     L        
Sbjct: 486 RCLEVLQASDNALE-NV-DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL------ 537

Query: 333 LALDGNQFEGKIPESIGNFSNELSKL 358
           L L GN    +        +  L  +
Sbjct: 538 LNLQGNSLC-QEEGIQERLAEMLPSV 562

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 53.2 bits (127), Expect = 3e-07
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 28/212 (13%)

Query: 78  LSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNI--------SFN 129
           L S      + P          + ++           +     L+ ++           +
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427

Query: 130 NLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIA 189
               E  V   +  ++++L L    +T       L  L  +  L+   N L         
Sbjct: 428 KFLLENSVLKMEYADVRVLHLAHKDLT---VLCHLEQLLLVTHLDLSHNRL--------- 475

Query: 190 NLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP 249
             +P  L+ L  L+VL  + N L       + N+  L  L L +N+L          + P
Sbjct: 476 RALPPALAALRCLEVLQASDNAL--ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCP 533

Query: 250 NL--LDF----IYCFNRFTGKIPGSLHNLTNI 275
            L  L+     +        ++   L ++++I
Sbjct: 534 RLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 37/162 (22%), Positives = 62/162 (38%), Gaps = 46/162 (28%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
              IG G FG V      G + S                        F+ E  T+R   H
Sbjct: 20  GRCIGEGQFGDV----HQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 75

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSAL 752
            ++VKLI   +         + ++ E  + G L  ++   + +     L      +++AL
Sbjct: 76  PHIVKLIGVITE------NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTAL 129

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
            YL        VH D+   N+L+      K+GDFGL+R++ +
Sbjct: 130 AYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 168

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 78.1 bits (192), Expect = 2e-15
 Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 26/143 (18%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNEL 746
           FI   + +++ + + ++++      +   +  F        +  + G+ +  H      L
Sbjct: 145 FIFPFDLVKDPQKKKMIRVRLDERDMWVLS-RFFLYPRMQSNLQTFGEVLLSHSSTHKSL 203

Query: 747 D----------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV 796
                      +   L  LH+     +VH+ L+P +I+LD+     +  F          
Sbjct: 204 VHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGVFLTGFEHLV------ 254

Query: 797 DNQSSISSTHVFMGSIGYVPPEY 819
                  +  V   S G+ PPE 
Sbjct: 255 ----RDGARVVSSVSRGFEPPEL 273

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 39/179 (21%), Positives = 75/179 (41%), Gaps = 42/179 (23%)

Query: 668 LIGSGSFGSVLH--NERTGSW--------------KSFIAECETLRNVRHRNLVKLITSC 711
           ++G G++G V    +                    +    E    ++++H+N+V+ + S 
Sbjct: 29  VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSF 88

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGE----RKNE-------LDITSALDYLHNDCE 760
           S      + F+    E +  GSL   +  +    + NE         I   L YLH++  
Sbjct: 89  SENGFIKI-FM----EQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQ- 142

Query: 761 VPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             +VH D+K  N+L++      K+ DFG ++    R+   +  + T  F G++ Y+ PE
Sbjct: 143 --IVHRDIKGDNVLINTYSGVLKISDFGTSK----RLAGINPCTET--FTGTLQYMAPE 193

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 77.4 bits (191), Expect = 2e-15
 Identities = 34/158 (21%), Positives = 61/158 (38%), Gaps = 47/158 (29%)

Query: 669 IGSGSFGSVLHNERTGSWKS-------------------------FIAECETLRNVRHRN 703
           +GSG+FG+V      G W                            + E   + +V + +
Sbjct: 23  LGSGAFGTVYK----GLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH 78

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN----EL-----DITSALDY 754
           + +L+  C +        + L+ + +  G L D++   + N     L      I   ++Y
Sbjct: 79  VCRLLGICLT------STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNY 132

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           L    +  +VH DL   N+L+      K+ DFGLA+ L
Sbjct: 133 LE---DRRLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 47/190 (24%), Positives = 75/190 (39%), Gaps = 45/190 (23%)

Query: 657 RRATGNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA----------ECETLR 697
           +R  G +     +G GSFG V    + +T          +  +           E   L+
Sbjct: 5   KRHIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLK 64

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------I 748
            +RH +++KL      + +     + + Y   + G L D+I     R  E +       I
Sbjct: 65  LLRHPHIIKLYDV---ITTPTDIVMVIEY---AGGELFDYIVEKK-RMTEDEGRRFFQQI 117

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
             A++Y H      +VH DLKP N+LLD+ +  K+ DFGL+   +    N          
Sbjct: 118 ICAIEYCHRHK---IVHRDLKPENLLLDDNLNVKIADFGLSN--IMTDGNF-----LKTS 167

Query: 809 MGSIGYVPPE 818
            GS  Y  PE
Sbjct: 168 CGSPNYAAPE 177

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 77.0 bits (190), Expect = 3e-15
 Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 37/171 (21%)

Query: 648 HPKISYDELRRA------TGNFSHENLIGSGSFGSVL--HNERTGS------------WK 687
            P+    +L            F     +G GS+GSV    ++ TG              +
Sbjct: 10  PPRRQLKKLDEDSLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQ 69

Query: 688 SFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NE 745
             I E   ++     ++VK   S           L +V E+   GS+ D I    K   E
Sbjct: 70  EIIKEISIMQQCDSPHVVKYYGSYFKNTD-----LWIVMEYCGAGSVSDIIRLRNKTLTE 124

Query: 746 LDITS-------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
            +I +        L+YLH       +H D+K GNILL+ E  AK+ DFG+A
Sbjct: 125 DEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVA 172

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 77.4 bits (191), Expect = 3e-15
 Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 42/177 (23%)

Query: 668 LIGSGSFGSVLHNERTGSWKSFIA--------------ECETLRNVRHRNLVKLITSCSS 713
            +G G+   V   ++ G+ K +                E   L  + H N++KL     +
Sbjct: 60  ELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFET 119

Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELD-------ITSALDYLHNDCEVPVV 764
                   ++LV E ++ G L D I  E+   +E D       I  A+ YLH   E  +V
Sbjct: 120 -----PTEISLVLELVTGGELFDRIV-EKGYYSERDAADAVKQILEAVAYLH---ENGIV 170

Query: 765 HSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           H DLKP N+L      +   K+ DFGL++     V++Q  + +     G+ GY  PE
Sbjct: 171 HRDLKPENLLYATPAPDAPLKIADFGLSKI----VEHQVLMKT---VCGTPGYCAPE 220

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 76.5 bits (189), Expect = 3e-15
 Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 724 LVYEFLSNGSLGDWIHGER----KNELDIT----SALDYLHNDCEVPVVHSDLKPGNILL 775
           +V E++   +L D +H E     K  +++      AL++ H   +  ++H D+KP NI++
Sbjct: 93  IVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSH---QNGIIHRDVKPANIMI 149

Query: 776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
                 KV DFG+AR +    D+ +S++ T   +G+  Y+ PE   G+      DV
Sbjct: 150 SATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDV 202

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 77.8 bits (191), Expect = 3e-15
 Identities = 19/173 (10%), Positives = 51/173 (29%), Gaps = 21/173 (12%)

Query: 674 FGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGS 733
              + + ++      FI   + +++ + + ++++      +   +  F        +  +
Sbjct: 135 LRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLS-RFFLYPRMQSNLQT 193

Query: 734 LGDWIHGERKNE------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA 781
            G+ +                   L +   L  LH+     +VH+ L+P +I+LD+    
Sbjct: 194 FGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYG---LVHTYLRPVDIVLDQRGGV 250

Query: 782 KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTS 834
            +  F          D  S++S                    +          
Sbjct: 251 FLTGFEHL-----VRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAF 298

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 76.6 bits (189), Expect = 4e-15
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 53/186 (28%)

Query: 669 IGSGSFGSV------------------------LHNERTGSWKSFIAECETLRNVRHRNL 704
           +GSG+ G V                                  +   E E L+ + H  +
Sbjct: 18  LGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCI 77

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDYL 755
           +K+    +  D+++     +V E +  G L D +  +  R  E         +  A+ YL
Sbjct: 78  IKIK---NFFDAED---YYIVLELMEGGELFDKVVGNK-RLKEATCKLYFYQMLLAVQYL 130

Query: 756 HNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           H +    ++H DLKP N+LL   +E+   K+ DFG ++ L E     +S+  T    G+ 
Sbjct: 131 HENG---IIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE-----TSLMRTLC--GTP 180

Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 181 TYLAPE 186

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 77.8 bits (192), Expect = 4e-15
 Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 55/220 (25%)

Query: 638 VGVSALFKVCHPKISYDELRRATGNFSHE----NLIGSGSFGSVL--HNERTGSW----- 686
           + +S         ++ D+          E      +GSG+ G V      +T        
Sbjct: 108 LSLSRNKVFVFFDLTVDDQSVYPKALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRI 167

Query: 687 -----------------KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFL 729
                             +   E E L+ + H  ++K+       D+++     +V E +
Sbjct: 168 ISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFF---DAED---YYIVLELM 221

Query: 730 SNGSLGDWIHGERK-NELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL---DEE 778
             G L D + G ++  E         +  A+ YLH   E  ++H DLKP N+LL   +E+
Sbjct: 222 EGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQEED 278

Query: 779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
              K+ DFG ++ L E        S      G+  Y+ PE
Sbjct: 279 CLIKITDFGHSKILGET-------SLMRTLCGTPTYLAPE 311

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 75.7 bits (187), Expect = 4e-15
 Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 49/184 (26%)

Query: 669 IGSGSFGSV----------------------LHNERTGSWKSFIAECETLRNVRHRNLVK 706
           +GSG F  V                        + R  S +    E   LR +RH N++ 
Sbjct: 13  LGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIIT 72

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHND 758
           L       ++K    + L+ E +S G L D++  +    E +       I   + YLH  
Sbjct: 73  LHDIF---ENKT--DVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLH-- 125

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
               + H DLKP NI+L          K+ DFG+A  +          +      G+  +
Sbjct: 126 -SKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAG-------NEFKNIFGTPEF 177

Query: 815 VPPE 818
           V PE
Sbjct: 178 VAPE 181

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 75.8 bits (187), Expect = 5e-15
 Identities = 44/200 (22%), Positives = 73/200 (36%), Gaps = 55/200 (27%)

Query: 658 RATGNFSHE----NLIGSGSFGSV-------------------------LHNERTGSWKS 688
            +T  F        ++G G    V                            E     ++
Sbjct: 10  HSTHGFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREA 69

Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--E 745
            + E + LR V  H N+++L  +  +       F  LV++ +  G L D++  E+    E
Sbjct: 70  TLKEVDILRKVSGHPNIIQLKDTYET-----NTFFFLVFDLMKKGELFDYLT-EKVTLSE 123

Query: 746 LD-------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN 798
            +       +   +  LH      +VH DLKP NILLD++M  K+ DFG +  L     +
Sbjct: 124 KETRKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQL-----D 175

Query: 799 QSSISSTHVFMGSIGYVPPE 818
                      G+  Y+ PE
Sbjct: 176 PGEKLREVC--GTPSYLAPE 193

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 76.2 bits (188), Expect = 5e-15
 Identities = 37/169 (21%), Positives = 66/169 (39%), Gaps = 52/169 (30%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS-------------------------FIAECETLRNVR 700
           + +IG+G FG V      G  K+                         F+ E   +    
Sbjct: 49  QKVIGAGEFGEV----YKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 104

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDI 748
           H N+++L    S       + + ++ E++ NG+L  ++   R+ +              I
Sbjct: 105 HHNIIRLEGVISK-----YKPMMIITEYMENGALDKFL---REKDGEFSVLQLVGMLRGI 156

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
            + + YL     +  VH DL   NIL++  +  KV DFGL+R L +  +
Sbjct: 157 AAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPE 202

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 44/179 (24%)

Query: 669 IGSGSFGSVLH--NERTG----------------SWKSFIAECETLRNVRHRNLVKLITS 710
           +G GSFG VL   +  T                    + + E E L+ + H N++KL   
Sbjct: 30  LGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEI 89

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD-------ITSALDYLHNDCEVP 762
               DS +     +V E  + G L D I   ++ +E D       + S + Y+H      
Sbjct: 90  LE--DSSS---FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHN--- 141

Query: 763 VVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           +VH DLKP NILL   +++   K+ DFGL+          + +      +G+  Y+ PE
Sbjct: 142 IVHRDLKPENILLESKEKDCDIKIIDFGLSTC----FQQNTKMKD---RIGTAYYIAPE 193

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 75.3 bits (186), Expect = 6e-15
 Identities = 46/196 (23%), Positives = 75/196 (38%), Gaps = 54/196 (27%)

Query: 658 RATGNFSH----ENLIGSGSFGSVLH--NERTGSW--------------KSFIAECETLR 697
              G+ +     EN IG GS+G V     + T                   F  E E ++
Sbjct: 2   STKGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMK 61

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-------I 748
           ++ H N+++L  +    D+ +   + LV E  + G L + +   ++   E D       +
Sbjct: 62  SLDHPNIIRLYETFE--DNTD---IYLVMELCTGGELFERVV-HKRVFRESDAARIMKDV 115

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISST 805
            SA+ Y H   ++ V H DLKP N L      +   K+ DFGLA                
Sbjct: 116 LSAVAYCH---KLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAAR----------FKPG 162

Query: 806 HVFM---GSIGYVPPE 818
            +     G+  YV P+
Sbjct: 163 KMMRTKVGTPYYVSPQ 178

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 39/151 (25%), Positives = 56/151 (37%), Gaps = 32/151 (21%)

Query: 663 FSHENLIGSGSFGSVL--HNERTGS---------------WKSFIAECETLRNVRHRNLV 705
           F+    IG GSFG V    + RT                  +    E   L       + 
Sbjct: 24  FTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVT 83

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHND 758
           K   S           L ++ E+L  GS  D +     +E  I +        LDYLH++
Sbjct: 84  KYYGSYLKDTK-----LWIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE 138

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
                +H D+K  N+LL E    K+ DFG+A
Sbjct: 139 ---KKIHRDIKAANVLLSEHGEVKLADFGVA 166

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 76.2 bits (188), Expect = 8e-15
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 49/167 (29%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
           + ++G+G FG V     +G  K                         F+ E   +    H
Sbjct: 50  DKVVGAGEFGEV----CSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDH 105

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK----NEL-----DITSAL 752
            N+++L    +       + + +V E++ NGSL  ++          +L      I S +
Sbjct: 106 PNIIRLEGVVT-----KSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGM 160

Query: 753 DYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
            YL          VH DL   NIL++  +  KV DFGL R L +  +
Sbjct: 161 KYLSDMG-----YVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPE 202

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 42/184 (22%), Positives = 70/184 (38%), Gaps = 49/184 (26%)

Query: 669 IGSGSFGSV---------------------LHNERTGSWKSFIA-ECETLRNVRHRNLVK 706
           +GSG F  V                       + R G  +  I  E   L+ ++H N++ 
Sbjct: 19  LGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVIT 78

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNELD-------ITSALDYLHND 758
           L       +  ++    L+ E ++ G L D++   E   E +       I + + YLH  
Sbjct: 79  LHEVYE--NKTDV---ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLH-- 131

Query: 759 CEVPVVHSDLKPGNILL----DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
             + + H DLKP NI+L      +   K+ DFGLA  +          +      G+  +
Sbjct: 132 -SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFG-------NEFKNIFGTPEF 183

Query: 815 VPPE 818
           V PE
Sbjct: 184 VAPE 187

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 75.9 bits (187), Expect = 1e-14
 Identities = 43/184 (23%), Positives = 72/184 (39%), Gaps = 42/184 (22%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIA------ECETLRNVRHRNLV 705
             +     IGSG+FG      ++ T          +          E    R++RH N+V
Sbjct: 20  DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIV 79

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD-------ITSALDYLH 756
           +       + +     LA++ E+ S G L + I   G R +E +       + S + Y H
Sbjct: 80  RFKEV---ILTPTH--LAIIMEYASGGELYERICNAG-RFSEDEARFFFQQLLSGVSYCH 133

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTA--KVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           +     + H DLK  N LLD       K+ DFG ++     + +Q         +G+  Y
Sbjct: 134 SMQ---ICHRDLKLENTLLDGSPAPRLKICDFGYSK--SSVLHSQ-----PKSTVGTPAY 183

Query: 815 VPPE 818
           + PE
Sbjct: 184 IAPE 187

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 49/212 (23%), Positives = 83/212 (39%), Gaps = 52/212 (24%)

Query: 636 KRVGVSALFKVCHPKISYDELRRATGNFSHE----NLIGSGSFGSVLH--NERTG----- 684
           + VGV ++ +  H           +  F+        IG GS+       ++ T      
Sbjct: 2   QTVGVHSIVQQLHRN---------SIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAV 52

Query: 685 -----SWKSFIAECETL-RNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI 738
                S +    E E L R  +H N++ L          + +++ +V E +  G L D I
Sbjct: 53  KIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYD-----DGKYVYVVTELMKGGELLDKI 107

Query: 739 HGERK-NELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDF 786
             ++  +E +       IT  ++YLH      VVH DLKP NIL         + ++ DF
Sbjct: 108 LRQKFFSEREASAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDF 164

Query: 787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           G A+ L      ++ +  T     +  +V PE
Sbjct: 165 GFAKQL----RAENGLLMTPC--YTANFVAPE 190

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 52/196 (26%), Positives = 80/196 (40%), Gaps = 48/196 (24%)

Query: 656 LRRATGNFSH----ENLIGSGSFGSVLH--NERTGSW----------------KSFIAEC 693
           +    G+ S        +GSG++G VL   ++ T                      + E 
Sbjct: 28  ITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEV 87

Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD----- 747
             L+ + H N++KL       D +N     LV E    G L D I    K NE+D     
Sbjct: 88  AVLKLLDHPNIMKLYDFFE--DKRN---YYLVMECYKGGELFDEIIHRMKFNEVDAAVII 142

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSI 802
             + S + YLH      +VH DLKP N+LL   +++   K+ DFGL+       +NQ  +
Sbjct: 143 KQVLSGVTYLHKHN---IVHRDLKPENLLLESKEKDALIKIVDFGLSAV----FENQKKM 195

Query: 803 SSTHVFMGSIGYVPPE 818
                 +G+  Y+ PE
Sbjct: 196 KE---RLGTAYYIAPE 208

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 50/193 (25%)

Query: 660 TGNFSHE----NLIGSGSFGSVLH--NERTG----------------SWKSFIAECETLR 697
           +  FS        +G G+F  V    ++ TG                 ++    E    R
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICR 60

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-------I 748
            ++H N+V+L  S          F  LV++ ++ G L + I   R+   E D       I
Sbjct: 61  KLQHPNIVRLHDSIQE-----ESFHYLVFDLVTGGELFEDIV-AREFYSEADASHCIQQI 114

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISST 805
             ++ Y H++    +VH +LKP N+LL    +    K+ DFGLA      V++  +    
Sbjct: 115 LESIAYCHSNG---IVHRNLKPENLLLASKAKGAAVKLADFGLAIE----VNDSEAWHG- 166

Query: 806 HVFMGSIGYVPPE 818
             F G+ GY+ PE
Sbjct: 167 --FAGTPGYLSPE 177

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 50/186 (26%)

Query: 669 IGSGSFGSV---------------------LHNERTGSWKSFIAECETLRNVRHRNLVKL 707
           IG G F  V                       +    S +    E      ++H ++V+L
Sbjct: 32  IGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVEL 91

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-----HGERKNELD-------ITSALDYL 755
           + + SS        L +V+EF+    L   I      G   +E         I  AL Y 
Sbjct: 92  LETYSS-----DGMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYC 146

Query: 756 HNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           H   +  ++H D+KP  +LL   +     K+G FG+A  L E       ++   V  G+ 
Sbjct: 147 H---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGE----SGLVAGGRV--GTP 197

Query: 813 GYVPPE 818
            ++ PE
Sbjct: 198 HFMAPE 203

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 30/174 (17%)

Query: 657 RRATGNFSHENLIGSGSFGSVL--HNERTGSW----KSFIAECETLR------NVRHRNL 704
           R    +++   +IG+GSFG V       +G      K    +    R       + H N+
Sbjct: 50  RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNI 109

Query: 705 VKLITS-CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------A 751
           V+L     SS + K+  +L LV +++   ++        + +  +              +
Sbjct: 110 VRLRYFFYSSGEKKDEVYLNLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 168

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISS 804
           L Y+H+     + H D+KP N+LLD +    K+ DFG A+ L+    N S I S
Sbjct: 169 LAYIHS---FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICS 219

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 51/210 (24%), Positives = 72/210 (34%), Gaps = 57/210 (27%)

Query: 648 HPKISYDELRRATGNFSH----ENLIGSGSFGSVL--HNERTGSW--------------- 686
           H   S  E     G        +  +GSG+FG V       +G                 
Sbjct: 5   HHHSSGRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPM 64

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--- 743
           +   AE E L+++ H N++K+       D  N   + +V E    G L + I   +    
Sbjct: 65  EQIEAEIEVLKSLDHPNIIKIFEVFE--DYHN---MYIVMETCEGGELLERIVSAQARGK 119

Query: 744 --NELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARF 791
             +E         + +AL Y H      VVH DLKP NIL          K+ DFGLA  
Sbjct: 120 ALSEGYVAELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL 176

Query: 792 LLERVDNQSSISSTHVFM---GSIGYVPPE 818
                       S        G+  Y+ PE
Sbjct: 177 ----------FKSDEHSTNAAGTALYMAPE 196

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 76.7 bits (189), Expect = 1e-14
 Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 49/197 (24%)

Query: 656 LRRATGNFSH----ENLIGSGSFGSVLH--NERTG-----------------SWKSFIAE 692
           ++ +T  FS     + ++G GSFG V+   ++ TG                   +S + E
Sbjct: 17  VQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLRE 76

Query: 693 CETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-NELD---- 747
            + L+ + H N++KL       D        LV E  + G L D I   ++ +E+D    
Sbjct: 77  VQLLKQLDHPNIMKLYEFFE--DKGY---FYLVGEVYTGGELFDEIISRKRFSEVDAARI 131

Query: 748 ---ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSS 801
              + S + Y+H +    +VH DLKP N+LL    ++   ++ DFGL+           +
Sbjct: 132 IRQVLSGITYMHKNK---IVHRDLKPENLLLESKSKDANIRIIDFGLSTHF-------EA 181

Query: 802 ISSTHVFMGSIGYVPPE 818
                  +G+  Y+ PE
Sbjct: 182 SKKMKDKIGTAYYIAPE 198

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 31/150 (20%)

Query: 663 FSHENLIGSGSFGSVL--HNERTG--------------SWKSFIAECETLRNVRHRNLVK 706
           ++    IG G+ G+V    +  TG                +  I E   +R  ++ N+V 
Sbjct: 22  YTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVN 81

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDC 759
            + S    D      L +V E+L+ GSL D +     +E  I +       AL++LH++ 
Sbjct: 82  YLDSYLVGDE-----LWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN- 135

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
              V+H D+K  NILL  + + K+ DFG  
Sbjct: 136 --QVIHRDIKSDNILLGMDGSVKLTDFGFC 163

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 74.5 bits (184), Expect = 2e-14
 Identities = 55/193 (28%), Positives = 75/193 (38%), Gaps = 49/193 (25%)

Query: 658 RATGNFSH----ENLIGSGSFGSV----------------LHNERTGSWKSFIAECETLR 697
             T N         ++GSG+F  V                +         S   E   L+
Sbjct: 2   MQTTNIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLK 61

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-------I 748
            ++H N+V L     S          LV + +S G L D I  ER    E D       +
Sbjct: 62  KIKHENIVTLEDIYES-----TTHYYLVMQLVSGGELFDRIL-ERGVYTEKDASLVIQQV 115

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISST 805
            SA+ YLH   E  +VH DLKP N+L    +E     + DFGL++        Q+ I ST
Sbjct: 116 LSAVKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKME------QNGIMST 166

Query: 806 HVFMGSIGYVPPE 818
               G+ GYV PE
Sbjct: 167 AC--GTPGYVAPE 177

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 75.4 bits (186), Expect = 2e-14
 Identities = 49/199 (24%), Positives = 80/199 (40%), Gaps = 50/199 (25%)

Query: 654 DELRRATGNFSHE----NLIGSGSFGSVLH--NERTG----------------SWKSFIA 691
           + +  A+  FS        +G G+F  V    ++ TG                 ++    
Sbjct: 18  EFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLER 77

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-- 747
           E    R ++H N+V+L  S          F  LV++ ++ G L + I   R+   E D  
Sbjct: 78  EARICRKLQHPNIVRLHDSIQE-----ESFHYLVFDLVTGGELFEDIV-AREFYSEADAS 131

Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQ 799
                I  ++ Y H      +VH +LKP N+LL    +    K+ DFGLA      V++ 
Sbjct: 132 HCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIE----VNDS 184

Query: 800 SSISSTHVFMGSIGYVPPE 818
            +      F G+ GY+ PE
Sbjct: 185 EAWHG---FAGTPGYLSPE 200

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 33/152 (21%)

Query: 663 FSHENLIGSGSFGSVL--HNERTGS--------------WKSFIAECETLRNVRHRNLVK 706
           +     +G G+FG V    N+ TG+               + +I E E L    H  +VK
Sbjct: 21  WEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVK 80

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELDITS-------ALDYLHN 757
           L+ +           L ++ EF   G++   +    +   E  I         AL++LH+
Sbjct: 81  LLGAYYHDGK-----LWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHS 135

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
                ++H DLK GN+L+  E   ++ DFG++
Sbjct: 136 K---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 75.1 bits (185), Expect = 2e-14
 Identities = 61/367 (16%), Positives = 112/367 (30%), Gaps = 82/367 (22%)

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
           S+    L  + +  E   D +                   +   L    +++ I ++ N 
Sbjct: 5   SIEGKSLKLDAITTE---DEKS------------------VFAVLLEDDSVKEIVLSGNT 43

Query: 285 L--EGT--LPPGLGNLPFLRTYNIGFNKIVSSGDD--EGLSFI-TSLTNSTHLNYLALDG 337
           +  E    L   + +   L              D+  E L  +  +L     L+ + L  
Sbjct: 44  IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103

Query: 338 NQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI 397
           N F     E + +F                     + +   L  L L  N +  +     
Sbjct: 104 NAFGPTAQEPLIDF---------------------LSKHTPLEHLYLHNNGLGPQ----- 137

Query: 398 GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE----IPISFGNFQSLLS 453
                   +  A  E+   +     N   L  I    N L          +F + + L +
Sbjct: 138 ----AGAKIARALQELA--VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191

Query: 454 IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN----LPNSLKNCKSLEE 509
           + +  N I    P+GI   L E ++  + +  +DL DN+ +      L  +LK+  +L E
Sbjct: 192 VKMVQNGIR---PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 248

Query: 510 LLMAYNQFSGP-IPNIVAELKG-----LEVLDLSSNKLSGSIPSDL-----QNLQALRSL 558
           L +     S      +V          L+ L L  N++       L     + +  L  L
Sbjct: 249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308

Query: 559 NLTFNNL 565
            L  N  
Sbjct: 309 ELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 52/240 (21%)

Query: 377 RSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE 436
            S+    L  ++I+ E           + +              L     + +I LSGN 
Sbjct: 4   FSIEGKSLKLDAITTE---------DEKSVFAV-----------LLEDDSVKEIVLSGNT 43

Query: 437 LTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGI--LRPLPEEISRLENVVTIDLSD 490
           +  E    +  +  + + L   + S+        +    LR L + + +   + T+ LSD
Sbjct: 44  IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103

Query: 491 NSLSGN----LPNSLKNCKSLEELLMAYNQFS-------------GPIPNIVAELKGLEV 533
           N+        L + L     LE L +  N                  +         L  
Sbjct: 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRS 163

Query: 534 LDLSSNKLSG----SIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
           +    N+L            Q+ + L ++ +  N +      EGI   +    L    +L
Sbjct: 164 IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR----PEGIEHLLLEG-LAYCQEL 218

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 58/362 (16%), Positives = 107/362 (29%), Gaps = 84/362 (23%)

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL----AGTVPSTIYNM 223
            S++  +   +    +I       + + L   +++K + L+ N +    A  +   I + 
Sbjct: 4   FSIEGKSLKLD----AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 224 TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
             L     +    G                      R   +IP +L  L           
Sbjct: 60  KDLEIAEFSDIFTG----------------------RVKDEIPEALRLLLQ--------- 88

Query: 284 LLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQF--- 340
                    L   P L T  +  N     G       I  L+  T L +L L  N     
Sbjct: 89  --------ALLKCPKLHTVRLSDNAF---GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137

Query: 341 ---------EGKIPESIGNFSNELSKLYLGGNHIYGK----IPASIGRLRSLTLLDLSYN 387
                    +          +  L  +  G N +          +    R L  + +  N
Sbjct: 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN 197

Query: 388 SISGE-IPIEIGQL----QGLQVLGLAGNEI-PGG---IPNSLANLKKLNQIDLSGNELT 438
            I  E I   + +     Q L+VL L  N     G   +  +L +   L ++ L+   L+
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 439 GE------IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS 492
                      S      L ++ L  N I  +  + +   + E++  L     ++L+ N 
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL---FLELNGNR 314

Query: 493 LS 494
            S
Sbjct: 315 FS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 48/322 (14%), Positives = 94/322 (29%), Gaps = 76/322 (23%)

Query: 73  VIGLNLS--SFGLEGT--ISPHIGNLSFLRSIQLQNNKLS----------GNLPREIGNL 118
           V  + LS  + G E    +S +I +   L   +  +                L + +   
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 119 FRLRVLNISFNNLQGELPVNISKL----TELKMLDLMANKIT------------GRVTDD 162
            +L  + +S N         +       T L+ L L  N +                 + 
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 163 QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL-----AGTVP 217
           + +N   L+ +  G+N     +                 L  + +  N +        + 
Sbjct: 154 KAKNAPPLRSIICGRN----RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL 209

Query: 218 STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTG--KIPGSLHNLTNI 275
             +     L  L L  N                            G   +  +L +  N+
Sbjct: 210 EGLAYCQELKVLDLQDNTFTHL-----------------------GSSALAIALKSWPNL 246

Query: 276 QIIRMTHNLL--EG--TLPPGLGNLPF--LRTYNIGFNKIVSSGDDEGLSFITSL-TNST 328
           + + +   LL   G   +      L    L+T  + +N+I     D   +  T +     
Sbjct: 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI---ELDAVRTLKTVIDEKMP 303

Query: 329 HLNYLALDGNQF--EGKIPESI 348
            L +L L+GN+F  E  + + I
Sbjct: 304 DLLFLELNGNRFSEEDDVVDEI 325

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 38/179 (21%), Positives = 69/179 (38%), Gaps = 39/179 (21%)

Query: 666 ENLIGSGSFGSVLH--NERTGSW---------KSFIAECETL-RNVRHRNLVKLITSCSS 713
           + ++G G  G VL   + RTG                E +   +     ++V ++    +
Sbjct: 34  KQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYEN 93

Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----------DITSALDYLHNDCEVP 762
           +       L ++ E +  G L   I  ER ++            DI +A+ +LH+     
Sbjct: 94  MHHGKRCLL-IIMECMEGGELFSRIQ-ERGDQAFTEREAAEIMRDIGTAIQFLHSHN--- 148

Query: 763 VVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           + H D+KP N+L    +++   K+ DFG A+         +    T     +  YV PE
Sbjct: 149 IAHRDVKPENLLYTSKEKDAVLKLTDFGFAKE----TTQNA--LQTPC--YTPYYVAPE 199

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 44/186 (23%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHR 702
            F    ++G G FG V   +   + K +                   + E + L  V  R
Sbjct: 185 TFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSR 244

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSAL 752
            +V L  +  + D+     L LV   ++ G L   I+   +              I   L
Sbjct: 245 FVVSLAYAYETKDA-----LCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGL 299

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           + LH +    +V+ DLKP NILLD+    ++ D GLA       + Q    +    +G++
Sbjct: 300 EDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAV---HVPEGQ----TIKGRVGTV 349

Query: 813 GYVPPE 818
           GY+ PE
Sbjct: 350 GYMAPE 355

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 74.8 bits (184), Expect = 3e-14
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 32/140 (22%)

Query: 692 ECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD- 747
           E   LR V  H +++ LI S  S       F+ LV++ +  G L D++  E+    E + 
Sbjct: 149 ETHILRQVAGHPHIITLIDSYES-----SSFMFLVFDLMRKGELFDYLT-EKVALSEKET 202

Query: 748 ------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS 801
                 +  A+ +LH +    +VH DLKP NILLD+ M  ++ DFG +            
Sbjct: 203 RSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCH---------- 249

Query: 802 ISSTHVFM---GSIGYVPPE 818
           +          G+ GY+ PE
Sbjct: 250 LEPGEKLRELCGTPGYLAPE 269

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 74.2 bits (183), Expect = 3e-14
 Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 47/179 (26%)

Query: 669 IGSGSFGSVLH--NERTGSW-------KSFIA----ECETLRNVR-HRNLVKLITSCSSL 714
           +G GSF       ++++          K   A    E   L+    H N+VKL       
Sbjct: 19  LGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVF--- 75

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKN--ELD-------ITSALDYLHNDCEVPVVH 765
              +     LV E L+ G L + I  ++K+  E +       + SA+ ++H+     VVH
Sbjct: 76  --HDQLHTFLVMELLNGGELFERIK-KKKHFSETEASYIMRKLVSAVSHMHDVG---VVH 129

Query: 766 SDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM---GSIGYVPPE 818
            DLKP N+L    ++ +  K+ DFG AR                       ++ Y  PE
Sbjct: 130 RDLKPENLLFTDENDNLEIKIIDFGFARLKPP---------DNQPLKTPCFTLHYAAPE 179

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 74.7 bits (183), Expect = 3e-14
 Identities = 18/243 (7%), Positives = 40/243 (16%), Gaps = 68/243 (27%)

Query: 631 RKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVL--HNERTG---- 684
                     + ++           L +          +  G    V    +        
Sbjct: 32  EPAAMVEAVTATVWPQNAETTVDSLLSQGERKLKLVEPLRVGDRSVVFLVRDVERLEDFA 91

Query: 685 -------------SWKSFIAECETLRNVRHRNLVKLITSC-------------------- 711
                          +           +   +  +                         
Sbjct: 92  LKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQL 151

Query: 712 -SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD---------------ITSALDYL 755
               D   +    L+    S   L           +                +      L
Sbjct: 152 SPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANL 210

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
            +     +VH    P N+ +  +    +GD      +  R                + Y 
Sbjct: 211 QSKG---LVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR---------GPASSVPVTYA 258

Query: 816 PPE 818
           P E
Sbjct: 259 PRE 261

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 65/225 (28%), Positives = 101/225 (44%), Gaps = 21/225 (9%)

Query: 62  PGV-ICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFR 120
            GV  CNN  N V   + SS  L   I  +I   +  + + LQ+NKLS    +    L +
Sbjct: 9   GGVCSCNNNKNSV---DCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTK 62

Query: 121 LRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNL 179
           LR+L ++ N LQ  LP  I  +L  L+ L +  NK+   +       L +L  L   +N 
Sbjct: 63  LRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQ 120

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY-NMTSLVHLRLASNQLGG 238
           L  S+PP +          L  L  L L  N L  ++P  ++  +TSL  LRL +NQL  
Sbjct: 121 L-KSLPPRV-------FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQL-K 170

Query: 239 EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
            +P    D L  L       N+      G+  +L  ++++++  N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 71.5 bits (176), Expect = 9e-14
 Identities = 53/204 (25%), Positives = 88/204 (43%), Gaps = 28/204 (13%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI---PGGIPNSLANLK 425
           IP++I        LDL  N +S        +L  L++L L  N++   P GI   L NL+
Sbjct: 31  IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88

Query: 426 KLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV 484
            L    ++ N+L   +PI  F    +L  + L  N++  ++P  +          L  + 
Sbjct: 89  TL---WVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVF-------DSLTKLT 136

Query: 485 TIDLSDNSLSGNLP----NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNK 540
            + L  N L  +LP    + L +   L+EL +  NQ          +L  L+ L L +N+
Sbjct: 137 YLSLGYNELQ-SLPKGVFDKLTS---LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 541 LSGSIPSDL-QNLQALRSLNLTFN 563
           L   +P     +L+ L+ L L  N
Sbjct: 193 LK-RVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 44/203 (21%), Positives = 81/203 (39%), Gaps = 36/203 (17%)

Query: 259 NRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGL 318
           N+ +     + H LT ++++ +  N L+ TLP G+            F +          
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI------------FKE---------- 83

Query: 319 SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLR 377
                L N   L  L +  N+ +  +P  + +    L++L L  N +   +P  +   L 
Sbjct: 84  -----LKN---LETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLT 133

Query: 378 SLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE 436
            LT L L YN +   +P  +  +L  L+ L L  N++      +   L +L  + L  N+
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192

Query: 437 LTGEIPISFGNFQSLLSIDLSNN 459
           L      +F + + L  + L  N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 62/257 (24%), Positives = 96/257 (37%), Gaps = 75/257 (29%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           +IP +I    P+D       K LDL  N+L+       + +T L  L L  N+L      
Sbjct: 30  AIPSNI----PADT------KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL------ 73

Query: 243 DVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTY 302
               TLP                 G    L N++ + +T N L+  LP G+         
Sbjct: 74  ---QTLP----------------AGIFKELKNLETLWVTDNKLQ-ALPIGV--------- 104

Query: 303 NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYL 360
                                L N   L  L LD NQ +  +P  +  F +  +L+ L L
Sbjct: 105 ------------------FDQLVN---LAELRLDRNQLK-SLPPRV--FDSLTKLTYLSL 140

Query: 361 GGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIP 418
           G N +   +P  +  +L SL  L L  N +   +P     +L  L+ L L  N++     
Sbjct: 141 GYNEL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPE 198

Query: 419 NSLANLKKLNQIDLSGN 435
            +  +L+KL  + L  N
Sbjct: 199 GAFDSLEKLKMLQLQEN 215

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 73.9 bits (182), Expect = 3e-14
 Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 31/150 (20%)

Query: 663 FSHENLIGSGSFGSVL--HNERTGS--------------WKSFIAECETLRNVRHRNLVK 706
                 IG GS G V     + +G                +    E   +R+ +H N+V+
Sbjct: 47  LDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVE 106

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDC 759
           +  S    +      L ++ EFL  G+L D +   R NE  I +       AL YLH   
Sbjct: 107 MYKSYLVGEE-----LWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ- 160

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLA 789
              V+H D+K  +ILL  +   K+ DFG  
Sbjct: 161 --GVIHRDIKSDSILLTLDGRVKLSDFGFC 188

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 74.6 bits (184), Expect = 4e-14
 Identities = 43/180 (23%), Positives = 70/180 (38%), Gaps = 45/180 (25%)

Query: 669 IGSGSFGSVL------------------HNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           +G G+F  V                           +    E    R ++H N+V+L  S
Sbjct: 19  LGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDS 78

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK--NELD-------ITSALDYLHNDCEV 761
            S           L+++ ++ G L + I   R+  +E D       I  A+ + H   ++
Sbjct: 79  ISE-----EGHHYLIFDLVTGGELFEDIV-AREYYSEADASHCIQQILEAVLHCH---QM 129

Query: 762 PVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            VVH +LKP N+LL    +    K+ DFGLA      V+ +          G+ GY+ PE
Sbjct: 130 GVVHRNLKPENLLLASKLKGAAVKLADFGLAIE----VEGEQQAWFGFA--GTPGYLSPE 183

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 75.1 bits (185), Expect = 4e-14
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 48/204 (23%)

Query: 648 HPKISYDELRRATGNFSH----ENLIGSGSFGSVLH--NERTG----------------S 685
           H   S  E     G F+       ++G GSFG VL   +  T                  
Sbjct: 5   HHHSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKD 64

Query: 686 WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-N 744
             + + E E L+ + H N++KL       DS +     +V E  + G L D I   ++ +
Sbjct: 65  TSTILREVELLKKLDHPNIMKLFEILE--DSSS---FYIVGELYTGGELFDEIIKRKRFS 119

Query: 745 ELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLE 794
           E D       + S + Y+H      +VH DLKP NILL   +++   K+ DFGL+     
Sbjct: 120 EHDAARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTC--- 173

Query: 795 RVDNQSSISSTHVFMGSIGYVPPE 818
                + +      +G+  Y+ PE
Sbjct: 174 -FQQNTKMKD---RIGTAYYIAPE 193

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 39/207 (18%), Positives = 66/207 (31%), Gaps = 68/207 (32%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNV-RHR 702
            F     IGSG FGSV                       +   ++ + E      + +H 
Sbjct: 12  EFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHS 71

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITS 750
           ++V+  ++         + + +  E+ + GSL D I    +              L +  
Sbjct: 72  HVVRYFSA-----WAEDDHMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGR 126

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEE-------------------MTAKVGDFGLARF 791
            L Y+H+     +VH D+KP NI +                      +  K+GD G    
Sbjct: 127 GLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVT- 182

Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPE 818
                     ISS  V  G   ++  E
Sbjct: 183 ---------RISSPQVEEGDSRFLANE 200

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 74.4 bits (183), Expect = 6e-14
 Identities = 49/207 (23%), Positives = 74/207 (35%), Gaps = 59/207 (28%)

Query: 656 LRRATGNFSH----ENLIGSGSFGSV-----------------------------LHNER 682
           +R+  G           +GSG++G V                              +   
Sbjct: 27  VRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNI 86

Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
               +    E   L+++ H N++KL       D K      LV EF   G L + I    
Sbjct: 87  EKFHEEIYNEISLLKSLDHPNIIKLFDVFE--DKKY---FYLVTEFYEGGELFEQIINRH 141

Query: 743 K-NELD-------ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARF 791
           K +E D       I S + YLH      +VH D+KP NILL   +  +  K+ DFGL+ F
Sbjct: 142 KFDECDAANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSF 198

Query: 792 LLERVDNQSSISSTHVFMGSIGYVPPE 818
                     +      +G+  Y+ PE
Sbjct: 199 ----FSKDYKLRD---RLGTAYYIAPE 218

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 74.9 bits (184), Expect = 6e-14
 Identities = 39/163 (23%), Positives = 62/163 (38%), Gaps = 48/163 (29%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS------------------------FIAECETLRNVRH 701
              IG G FG V      G + S                        F+ E  T+R   H
Sbjct: 395 GRCIGEGQFGDVHQ----GIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 450

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSA 751
            ++VKLI   +         + ++ E  + G L  ++   RK  L           +++A
Sbjct: 451 PHIVKLIGVITE------NPVWIIMELCTLGELRSFLQ-VRKFSLDLASLILYAYQLSTA 503

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
           L YL        VH D+   N+L+      K+GDFGL+R++ +
Sbjct: 504 LAYLE---SKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED 543

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 72.8 bits (179), Expect = 8e-14
 Identities = 52/197 (26%), Positives = 76/197 (38%), Gaps = 47/197 (23%)

Query: 627 PIIVRKRKAKRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVL--HNERTG 684
           P   R    K   V+ LF    P+  + +LR           IG GSFG+V    + R  
Sbjct: 30  PAGGRAGSLKDPDVAELFFKDDPEKLFSDLRE----------IGHGSFGAVYFARDVRNS 79

Query: 685 S-----------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE 727
                             W+  I E   L+ +RH N ++         +       LV E
Sbjct: 80  EVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHT-----AWLVME 134

Query: 728 FLSNGSLGDWIHGERK--NELDITS-------ALDYLHNDCEVPVVHSDLKPGNILLDEE 778
           +   GS  D +   +K   E++I +        L YLH+     ++H D+K GNILL E 
Sbjct: 135 YCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEP 190

Query: 779 MTAKVGDFGLARFLLER 795
              K+GDFG A  +   
Sbjct: 191 GLVKLGDFGSASIMAPA 207

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 72.7 bits (179), Expect = 1e-13
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 35/193 (18%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKL--- 707
           IG G+FG V                  + NE+ G   + + E + L+ ++H N+V L   
Sbjct: 25  IGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 84

Query: 708 ITSCSSLDSKNMEFLALVYEFLS-------NGSLGDWIHGERKNELD-ITSALDYLHNDC 759
             + +S  ++    + LV++F         +  L  +   E K  +  + + L Y+H + 
Sbjct: 85  CRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNK 144

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
              ++H D+K  N+L+  +   K+ DFGLAR      ++Q +  +  V   ++ Y PPE 
Sbjct: 145 ---ILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVV--TLWYRPPEL 199

Query: 820 GLGERP-STAGDV 831
            LGER      D+
Sbjct: 200 LLGERDYGPPIDL 212

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 73.1 bits (180), Expect = 1e-13
 Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 41/173 (23%)

Query: 663 FSHENLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
           +++  +IG+GSFG V                               E + +R V+H N+V
Sbjct: 42  YTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR------ELQIMRIVKHPNVV 95

Query: 706 KLITS-CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS------------AL 752
            L     S+ D K+  FL LV E++   ++        K +  +              +L
Sbjct: 96  DLKAFFYSNGDKKDEVFLNLVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSL 154

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTA-KVGDFGLARFLLERVDNQSSISS 804
            Y+H+   + + H D+KP N+LLD      K+ DFG A+ L+    N S I S
Sbjct: 155 AYIHS---IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICS 204

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 42/200 (21%), Positives = 65/200 (32%), Gaps = 54/200 (27%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTG--------------SWKSFIA------ECETLRN 698
             +    L+GSG FGSV                        W           E   L+ 
Sbjct: 43  SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKK 102

Query: 699 VRHR--NLVKLITSCSSLDSKNMEFLALVYEFLSN-GSLGDWIHGERKNELD-------- 747
           V      +++L+      +  +   L  + E       L D+I    +  L         
Sbjct: 103 VSSGFSGVIRLLDW---FERPDSFVL--ILERPEPVQDLFDFI--TERGALQEELARSFF 155

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISS 804
             +  A+ + HN     V+H D+K  NIL+D      K+ DFG    L +        + 
Sbjct: 156 WQVLEAVRHCHNCG---VLHRDIKDENILIDLNRGELKLIDFGSGALLKD--------TV 204

Query: 805 THVFMGSIGYVPPEYGLGER 824
              F G+  Y PPE+    R
Sbjct: 205 YTDFDGTRVYSPPEWIRYHR 224

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 52/206 (25%), Positives = 80/206 (38%), Gaps = 43/206 (20%)

Query: 658 RATGNFSHENLIGSGSFGSV-------------------LHNERTGSWKSFIAECETLRN 698
           RA   +     IG G++G V                   +     G   S I E   LR+
Sbjct: 8   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 67

Query: 699 VR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           +    H N+V+L   C+   +     L LV+E +    L  ++    +  +         
Sbjct: 68  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMM 126

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
             +   LD+LH+     VVH DLKP NIL+      K+ DFGLAR           ++ T
Sbjct: 127 FQLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIY------SFQMALT 177

Query: 806 HVFMGSIGYVPPEYGLGERPSTAGDV 831
            V + ++ Y  PE  L    +T  D+
Sbjct: 178 SVVV-TLWYRAPEVLLQSSYATPVDL 202

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 72.9 bits (179), Expect = 2e-13
 Identities = 41/188 (21%), Positives = 75/188 (39%), Gaps = 45/188 (23%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHR 702
            F    ++G G FG V   +   + K +                   + E + L  V  R
Sbjct: 186 WFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSR 245

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------------DITS 750
            +V L  +  +        L LV   ++ G +   I+   ++               I S
Sbjct: 246 FIVSLAYAFETKTD-----LCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVS 300

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            L++LH      +++ DLKP N+LLD++   ++ D GLA      V+ ++  + T  + G
Sbjct: 301 GLEHLHQRN---IIYRDLKPENVLLDDDGNVRISDLGLA------VELKAGQTKTKGYAG 351

Query: 811 SIGYVPPE 818
           + G++ PE
Sbjct: 352 TPGFMAPE 359

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 54/184 (29%), Positives = 79/184 (42%), Gaps = 40/184 (21%)

Query: 662 NFSHENLIGSGSFGSVLHNER--TGSW-------KSFI----------AECETLRNVRHR 702
            F +  L+G G+FG V+  +   TG +       K  I           E   L+N RH 
Sbjct: 149 EFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHP 208

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDY 754
            L  L  S      +  + L  V E+ + G L   +  ER    D        I SALDY
Sbjct: 209 FLTALKYS-----FQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDY 263

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH+  E  VV+ DLK  N++LD++   K+ DFGL +      +     ++   F G+  Y
Sbjct: 264 LHS--EKNVVYRDLKLENLMLDKDGHIKITDFGLCK------EGIKDGATMKTFCGTPEY 315

Query: 815 VPPE 818
           + PE
Sbjct: 316 LAPE 319

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 40/202 (19%), Positives = 67/202 (33%), Gaps = 56/202 (27%)

Query: 661 GNFSHENLIGSGSFGSVLH--NERTGSW-------KSFIAECETLRNV------------ 699
             +    L+G G FG+V                  ++ +     L +             
Sbjct: 31  AEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWK 90

Query: 700 -----RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGS-LGDWIHGERKNELD------ 747
                 H  +++L+      +++    L  V E       L D+I    K  L       
Sbjct: 91  VGAGGGHPGVIRLLDW---FETQEGFML--VLERPLPAQDLFDYI--TEKGPLGEGPSRC 143

Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSI 802
               + +A+ + H+     VVH D+K  NIL+D     AK+ DFG    L +        
Sbjct: 144 FFGQVVAAIQHCHSRG---VVHRDIKDENILIDLRRGCAKLIDFGSGALLHD-------- 192

Query: 803 SSTHVFMGSIGYVPPEYGLGER 824
                F G+  Y PPE+    +
Sbjct: 193 EPYTDFDGTRVYSPPEWISRHQ 214

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 45/208 (21%)

Query: 658 RATGNFSHENLIGSGSFGSV------------------LHNERTGSWK---SFIAECETL 696
            AT  +     IG G++G+V                  + N   G      S + E   L
Sbjct: 6   MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALL 65

Query: 697 RNVR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ 747
           R +    H N+V+L+  C++  +     + LV+E +    L  ++       L       
Sbjct: 66  RRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKD 124

Query: 748 ----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSIS 803
                   LD+LH +C   +VH DLKP NIL+    T K+ DFGLAR           ++
Sbjct: 125 LMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGTVKLADFGLARIY------SYQMA 175

Query: 804 STHVFMGSIGYVPPEYGLGERPSTAGDV 831
            T V + ++ Y  PE  L    +T  D+
Sbjct: 176 LTPVVV-TLWYRAPEVLLQSTYATPVDM 202

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 46/183 (25%)

Query: 666 ENLIGSGSFGSVLH--NERTGSW---KSFIAECETLRN--------VRHRNLVKLITSCS 712
             ++G G  G VL   N+RT      K  + +C   R          +  ++V+++    
Sbjct: 67  SQVLGLGINGKVLQIFNKRTQEKFALKM-LQDCPKARREVELHWRASQCPHIVRIVDVYE 125

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----------DITSALDYLHNDCEV 761
           +L +     L +V E L  G L   I  +R ++             I  A+ YLH    +
Sbjct: 126 NLYAGRKCLL-IVMECLDGGELFSRIQ-DRGDQAFTEREASEIMKSIGEAIQYLH---SI 180

Query: 762 PVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM---GSIGYV 815
            + H D+KP N+L          K+ DFG A+            +S +       +  YV
Sbjct: 181 NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE----------TTSHNSLTTPCYTPYYV 230

Query: 816 PPE 818
            PE
Sbjct: 231 APE 233

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 70.2 bits (173), Expect = 4e-13
 Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 37/157 (23%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 4   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 63

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALD 753
           +VKL+    + +      L LV+EFL    L  ++       +           +   L 
Sbjct: 64  IVKLLDVIHTENK-----LYLVFEFLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLA 117

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 118 FCHSHR---VLHRDLKPQNLLINTEGAIKLADFGLAR 151

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 28/179 (15%), Positives = 53/179 (29%), Gaps = 38/179 (21%)

Query: 660 TGNFSHENLIGSG--SFGSV------------------LHNERTGSWKSFIAECETLRNV 699
            G +    +IG G     +V                  L             E    +  
Sbjct: 24  GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLF 83

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DIT 749
            H N+V    +  + +      L +V  F++ GS  D I     + +           + 
Sbjct: 84  NHPNIVPYRATFIADNE-----LWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVL 138

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVF 808
            ALDY+H+      VH  +K  +IL+  +    +        ++     Q  +     +
Sbjct: 139 KALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKY 194

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 30/182 (16%), Positives = 59/182 (32%), Gaps = 54/182 (29%)

Query: 655 ELRRATGNFSHENLIGSGSFGSV-----------------------LHNERTGSWKSFIA 691
           ++R    +      +G G+F  +                       L        +SF  
Sbjct: 4   KIRNE--DLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE 61

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK----NEL- 746
               +  + H++LV     C        E + LV EF+  GSL  ++   +         
Sbjct: 62  AASMMSKLSHKHLVLNYGVCV----CGDENI-LVQEFVKFGSLDTYLKKNKNCINILWKL 116

Query: 747 ----DITSALDYL--HNDCEVPVVHSDLKPGNILLD--------EEMTAKVGDFGLARFL 792
                + +A+ +L  +      ++H ++   NILL              K+ D G++  +
Sbjct: 117 EVAKQLAAAMHFLEENT-----LIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITV 171

Query: 793 LE 794
           L 
Sbjct: 172 LP 173

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 70.4 bits (173), Expect = 5e-13
 Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 48/186 (25%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHR 702
            F     +G+GSFG V+  +   S   +                   + E   L+ V   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSAL 752
            LVKL  S      K+   L +V E+++ G +  + H  R               I    
Sbjct: 102 FLVKLEFSF-----KDNSNLYMVMEYVAGGEM--FSHLRRIGRFSEPHARFYAAQIVLTF 154

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YLH    + +++ DLKP N+L+D++   +V DFG A+ +  R         T    G+ 
Sbjct: 155 EYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR---------TWTLCGTP 202

Query: 813 GYVPPE 818
             + PE
Sbjct: 203 EALAPE 208

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 70.0 bits (172), Expect = 6e-13
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 29/141 (20%)

Query: 692 ECETLRNVRHR-NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI---HGERKNELD 747
           E   L   +    ++ L       ++  +    L+ E+ + G +         E  +E D
Sbjct: 78  EIAVLELAKSCPRVINLHEVYE--NTSEI---ILILEYAAGGEIFSLCLPELAEMVSEND 132

Query: 748 -------ITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLLERVD 797
                  I   + YLH   +  +VH DLKP NILL         K+ DFG++R +     
Sbjct: 133 VIRLIKQILEGVYYLH---QNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHA-- 187

Query: 798 NQSSISSTHVFMGSIGYVPPE 818
                      MG+  Y+ PE
Sbjct: 188 -----CELREIMGTPEYLAPE 203

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 69.7 bits (171), Expect = 6e-13
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 41/169 (24%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG---------------SWKSFIAECETLRNVRHRNL 704
           ++  + +IGSG+   V   +                    S    + E + +    H N+
Sbjct: 16  DYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNI 75

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------------DI 748
           V      S +       L LV + LS GS+ D I                        ++
Sbjct: 76  VSYY--TSFVVKDE---LWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREV 130

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
              L+YLH +     +H D+K GNILL E+ + ++ DFG++ FL    D
Sbjct: 131 LEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGD 176

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 52/328 (15%), Positives = 109/328 (33%), Gaps = 52/328 (15%)

Query: 280 MTHNLLEGT----LPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITS--LTNSTHLNYL 333
           M + L        +         + + ++  N +           +          +  L
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNL----YSISTVELIQAFANTPASVTSL 56

Query: 334 ALDGNQFEGK----IPESIGNFSNELSKLYLGGNHIYGKIPASIGRL-----RSLTLLDL 384
            L GN    K    + + +      ++ L L GN +  K    + +       ++T+LDL
Sbjct: 57  NLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116

Query: 385 SYNSISGEIPIEIGQL-----QGLQVLGLAGNEIPGGIPNSLAN-LKKLNQ----IDLSG 434
            +N  S +   E  Q        +  L L GN++     + L   L  +      ++L G
Sbjct: 117 GWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176

Query: 435 NELTGEIPISFGNF-----QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           N L  +       F      S+ S+DLS N +       +        + +    +++L 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV---SLNLC 233

Query: 490 DNSLSG----NLPNSLKNCKSLEELLMAYNQFSGP-------IPNIVAELKGLEVLDLSS 538
            N L G    NL     + K L+ + + Y+            +      ++ + ++D + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 539 NKLSGSIPSDLQNL-QALRSLNLTFNNL 565
            ++    PS    +   +R L+   +  
Sbjct: 294 KEIH---PSHSIPISNLIRELSGKADVP 318

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.7 bits (171), Expect = 9e-13
 Identities = 49/311 (15%), Positives = 106/311 (34%), Gaps = 51/311 (16%)

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSL--TNSTHLNYLALDGNQFEGK----IPESIGNFS 352
           + + N+  N +      +    +  +      ++  L L GN    K    + +++    
Sbjct: 53  VTSLNLSGNSL----GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 353 NELSKLYLGGNHIYGKIPASIGRL-----RSLTLLDLSYNSISGEIPIEIGQL-----QG 402
             ++ L LG N    K  +   +       S+T L+L  N +  +   E+ Q+       
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPAN 168

Query: 403 LQVLGLAGNEIP----GGIPNSLANL-KKLNQIDLSGNELT--GEIPISFG---NFQSLL 452
           +  L L GN +       +   LA++   +  +DLS N L       +++        ++
Sbjct: 169 VNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228

Query: 453 SIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG-------NLPNSLKNCK 505
           S++L  N ++G   + +          L+++ T+ L  + +          L  +  N +
Sbjct: 229 SLNLCLNCLHGPSLENLK----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ 284

Query: 506 SLEELLMAYNQFSGPIPNIVAEL-----KGLEVLDLSSNKLS-----GSIPSDLQNLQAL 555
            +  +     +        ++ L        +V  L +  L       +   DL     L
Sbjct: 285 KIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

Query: 556 RSLNLTFNNLE 566
           R    T   L 
Sbjct: 345 RESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 63/370 (17%), Positives = 118/370 (31%), Gaps = 69/370 (18%)

Query: 189 ANLIPSDLSRLENLKVLDLTINRLAGTVPSTI-----YNMTSLVHLRLASNQLGGEIPYD 243
           +N +    S    +  LDL++N L       +         S+  L L+ N LG +   +
Sbjct: 11  SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 244 VRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPF- 298
           +   L                         N+  + ++ N L       L   L  +PF 
Sbjct: 71  LVQILA--------------------AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFT 110

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITS--LTNSTHLNYLALDGNQFEGK----IPESIGNFS 352
           +   ++G+N        +  S            +  L L GN    K    + + +    
Sbjct: 111 ITVLDLGWNDF----SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166

Query: 353 NELSKLYLGGNHIYGKIPASIGRL-----RSLTLLDLSYNSISGEIPIEIGQL-----QG 402
             ++ L L GN++  K  A + +       S+T LDLS N +  +   E+  +       
Sbjct: 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226

Query: 403 LQVLGLAGNEIPG----GIPNSLANLKKLNQIDLSGNELTGEIPI-------SFGNFQSL 451
           +  L L  N + G     +     +LK L  + L  + +             +F N Q +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 452 LSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS-----GNLPNSLKNCKS 506
           + +D +   I+ +    I   + E   + +      L +  L            L     
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKAD---VPSLLNQCLIFAQKHQTNIEDLNIPDE 343

Query: 507 LEELLMAYNQ 516
           L E +     
Sbjct: 344 LRESIQTCKP 353

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 55/361 (15%), Positives = 107/361 (29%), Gaps = 74/361 (20%)

Query: 121 LRVLNISFNNLQGE--------LPVNISKLTELKMLDLMANKIT---GRVTDDQLR-NLR 168
           +  L++S NNL                + +T L   +L  N +           L     
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSL---NLSGNSLGFKNSDELVQILAAIPA 80

Query: 169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNM----- 223
           ++  LN   N L       +   + +    +    VLDL  N  +    S          
Sbjct: 81  NVTSLNLSGNFLSYKSSDELVKTLAAIPFTI---TVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 224 TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
            S+  L L  N LG +       +   L+  +                  N+  + +  N
Sbjct: 138 ASITSLNLRGNDLGIK-------SSDELIQILAAIP-------------ANVNSLNLRGN 177

Query: 284 LL--EGT--LPPGLGNLPF-LRTYNIGFNKIVSSGDDEGLSFITSL--TNSTHLNYLALD 336
            L  +    L   L ++P  + + ++  N +      +  + +  +  +   H+  L L 
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLL----GLKSYAELAYIFSSIPNHVVSLNLC 233

Query: 337 GNQFEGKIPESIGNF---SNELSKLYLGGNHIYGK-------IPASIGRLRSLTLLDLSY 386
            N   G   E++         L  +YL  + +          + A+   ++ + L+D + 
Sbjct: 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293

Query: 387 NSISGEIPIEIGQL-----QGLQVLGLAGNEI-----PGGIPNSLANLKKLNQIDLSGNE 436
             I     I I  L         V  L    +            L    +L +   +   
Sbjct: 294 KEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353

Query: 437 L 437
           L
Sbjct: 354 L 354

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 48/333 (14%), Positives = 103/333 (30%), Gaps = 63/333 (18%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFR-----LRVLNISFNNLQGELPVNISKL----- 142
             + + S+ L  N L      E+  +       +  LN+S N L  +    + K      
Sbjct: 49  TPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIP 108

Query: 143 TELKMLDLMANKITGRVTDDQLRNLR----SLQVLNFGKNLLWGSIPPSIANLIPSDLSR 198
             + +LDL  N  + + + +  +       S+  LN   N     +    ++ +   L+ 
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN----DLGIKSSDELIQILAA 164

Query: 199 L-ENLKVLDLTINR--------LAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP 249
           +  N+  L+L  N         LA  + S      S+  L L++N LG +       +  
Sbjct: 165 IPANVNSLNLRGNNLASKNCAELAKFLAS---IPASVTSLDLSANLLGLK-------SYA 214

Query: 250 NLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPFLRTYNIG 305
            L                      ++  + +  N L G     L     +L  L+T  + 
Sbjct: 215 ELAYIF-------------SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261

Query: 306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQF--EG--KIPESIGNFSNELSKLYLG 361
           ++ + +   ++  +   +  N   +  +  +G +        I   I   S +     L 
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321

Query: 362 GNHIY-----GKIPASIGRLRSLTLLDLSYNSI 389
              +            +     L     +   +
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 69.6 bits (171), Expect = 1e-12
 Identities = 48/206 (23%), Positives = 81/206 (39%), Gaps = 40/206 (19%)

Query: 657 RRATGNFSHENLIGSGSFGSVL--HNERTGSW---------KSF----IAECETLRNVRH 701
           R+    F  E + G G+FG+V     + TG             F    +   + L  + H
Sbjct: 19  RKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHH 78

Query: 702 RNLVKL--ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS--------- 750
            N+V+L           +   +L +V E++ + +L        + ++             
Sbjct: 79  PNIVQLQSYFYTLGERDRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQ 137

Query: 751 ---ALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQSSISSTH 806
              ++  LH    V V H D+KP N+L++E   T K+ DFG A+ L     N + I S +
Sbjct: 138 LIRSIGCLHLPS-VNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRY 196

Query: 807 VFMGSIGYVPPEYGLG-ERPSTAGDV 831
                  Y  PE   G +  +TA D+
Sbjct: 197 -------YRAPELIFGNQHYTTAVDI 215

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 69.1 bits (169), Expect = 1e-12
 Identities = 40/238 (16%), Positives = 70/238 (29%), Gaps = 85/238 (35%)

Query: 656 LRRATGNFSHE----NLIGSGSFGSV---------------------LHNERTGSWKSFI 690
              +      +      IG GS+G V                     +        +   
Sbjct: 17  QGGSLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIK 76

Query: 691 AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---- 746
            E   ++ + H N+ +L       + +   ++ LV E    G L D ++    +      
Sbjct: 77  TEVRLMKKLHHPNIARLY---EVYEDEQ--YICLVMELCHGGHLLDKLNVFIDDSTGKCA 131

Query: 747 --------------------------------------------DITSALDYLHNDCEVP 762
                                                        I SAL YLHN     
Sbjct: 132 MDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQ---G 188

Query: 763 VVHSDLKPGNILL--DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           + H D+KP N L   ++    K+ DFGL++   +  + +    +T    G+  +V PE
Sbjct: 189 ICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKA--GTPYFVAPE 244

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 68.3 bits (168), Expect = 2e-12
 Identities = 42/197 (21%), Positives = 79/197 (40%), Gaps = 51/197 (25%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSVL--HNERTGSW-------KSFI--------- 690
           PK S         +F     +G+GSFG V    +   G +       K  +         
Sbjct: 1   PKYSLQ-------DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHT 53

Query: 691 -AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-- 747
             E   L  V H  ++++  +      ++ + + ++ +++  G L   +   ++      
Sbjct: 54  NDERLMLSIVTHPFIIRMWGTF-----QDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVA 108

Query: 748 ------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS 801
                 +  AL+YLH      +++ DLKP NILLD+    K+ DFG A+++ +       
Sbjct: 109 KFYAAEVCLALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV------ 159

Query: 802 ISSTHVFMGSIGYVPPE 818
              T+   G+  Y+ PE
Sbjct: 160 ---TYTLCGTPDYIAPE 173

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 29/148 (19%), Positives = 51/148 (34%), Gaps = 12/148 (8%)

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
           P N+     +  + L  N I   +        + L+ ++   N +   + P         
Sbjct: 27  PTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDA------- 75

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
              L +L  L L  N++     S    + SL  L L +N++   +  D    L NL    
Sbjct: 76  FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLS 134

Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
              N+      G+   L  IQ + +  N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 46/183 (25%), Positives = 79/183 (43%), Gaps = 45/183 (24%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR 471
           EIP  +P ++  +       L  N +    P +F  ++ L  IDLSNN+I+  +      
Sbjct: 25  EIPTNLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAF- 76

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL 531
                   L ++ ++ L  N ++  LP SL               F G        L  L
Sbjct: 77  ------QGLRSLNSLVLYGNKIT-ELPKSL---------------FEG--------LFSL 106

Query: 532 EVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNP 587
           ++L L++NK++  +  D  Q+L  L  L+L  N L+ +  ++G F  +     +HL  NP
Sbjct: 107 QLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTI--AKGTFSPLRAIQTMHLAQNP 163

Query: 588 KLC 590
            +C
Sbjct: 164 FIC 166

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 333 LALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSI 389
           + L+ N  +  IP   G FS   +L ++ L  N I  ++       LRSL  L L  N I
Sbjct: 37  IRLEQNTIK-VIPP--GAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKI 92

Query: 390 SGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNF 448
           + E+P  +   L  LQ+L L  N+I     ++  +L  LN + L  N+L      +F   
Sbjct: 93  T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151

Query: 449 QSLLSIDLSNN 459
           +++ ++ L+ N
Sbjct: 152 RAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 37/144 (25%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
               LR I L NN++S  L  +    L  L  L +  N +  ELP ++   L  L++L L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLL 111

Query: 151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN 210
            ANKI                            +              L NL +L L  N
Sbjct: 112 NANKIN--------------------------CLRVDA-------FQDLHNLNLLSLYDN 138

Query: 211 RLAGTVPSTIYNMTSLVHLRLASN 234
           +L      T   + ++  + LA N
Sbjct: 139 KLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 10/137 (7%)

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSNNRIN 462
             + L  N I    P + +  KKL +IDLS N+++ E+   +F   +SL S+ L  N+I 
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT 93

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
             +PK +          L ++  + L+ N ++    ++ ++  +L  L +  N+      
Sbjct: 94  -ELPKSLFE-------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 523 NIVAELKGLEVLDLSSN 539
              + L+ ++ + L+ N
Sbjct: 146 GTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 30/138 (21%), Positives = 49/138 (35%), Gaps = 24/138 (17%)

Query: 258 FNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG----LGNLPFLRTYNIGFNKIVS-- 311
            N      PG+      ++ I +++N +   L P     L +L  L  Y    NKI    
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG---NKITELP 96

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKI 369
               EGL           L  L L+ N+    +      F +   L+ L L  N +    
Sbjct: 97  KSLFEGL---------FSLQLLLLNANKIN-CLRV--DAFQDLHNLNLLSLYDNKLQTIA 144

Query: 370 PASIGRLRSLTLLDLSYN 387
             +   LR++  + L+ N
Sbjct: 145 KGTFSPLRAIQTMHLAQN 162

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 34/173 (19%), Positives = 58/173 (33%), Gaps = 53/173 (30%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
            + E +     +G GSFG V      G  K                       F+ E   
Sbjct: 22  VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASV 81

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------- 745
           ++     ++V+L+   S           ++ E ++ G L  ++   R             
Sbjct: 82  MKEFNCHHVVRLLGVVSQGQP-----TLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPS 136

Query: 746 --------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    +I   + YL+       VH DL   N ++ E+ T K+GDFG+ R
Sbjct: 137 LSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTR 186

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 39/182 (21%)

Query: 663 FSHENLIGSGSFGSVL-----HNERTGSWKS--------------FIAECETLRNVRHRN 703
           +    +IG G+FG V         +  + K               F  E + +       
Sbjct: 71  YEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW 130

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------ITSALDYLH 756
           +V+L  +      ++  +L +V E++  G L + +      E         +  ALD +H
Sbjct: 131 VVQLFYAF-----QDDRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIH 185

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
               +  +H D+KP N+LLD+    K+ DFG    +     N+  +      +G+  Y+ 
Sbjct: 186 ---SMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKM-----NKEGMVRCDTAVGTPDYIS 237

Query: 817 PE 818
           PE
Sbjct: 238 PE 239

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 31/148 (20%), Positives = 51/148 (34%), Gaps = 11/148 (7%)

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
           P +I        L L  N+ T        + L  L+ +NF  N +   I           
Sbjct: 27  PEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGA------- 76

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI 255
                 +  + LT NRL          + SL  L L SN++   +  D    L ++    
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLS 135

Query: 256 YCFNRFTGKIPGSLHNLTNIQIIRMTHN 283
              N+ T   PG+   L ++  + +  N
Sbjct: 136 LYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 12/141 (8%)

Query: 98  RSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKI 155
             ++L NN+ +      I   L +LR +N S N +  ++        + +  + L +N++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93

Query: 156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT 215
              V     + L SL+ L    N +   +              L ++++L L  N++   
Sbjct: 94  E-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDS-------FIGLSSVRLLSLYDNQITTV 144

Query: 216 VPSTIYNMTSLVHLRLASNQL 236
            P     + SL  L L +N  
Sbjct: 145 APGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 46/181 (25%), Positives = 72/181 (39%), Gaps = 46/181 (25%)

Query: 412 EIPGGIPNSLANLKKLNQIDLSGNELTG-EIPISFGNFQSLLSIDLSNNRINGNIPKGIL 470
           +IP  IP   A L       L+ NE T  E    F     L  I+ SNN+I  +I +G  
Sbjct: 25  KIPEHIPQYTAEL------RLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAF 77

Query: 471 RPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKG 530
                       V  I L+ N L  N+ + +               F G        L+ 
Sbjct: 78  -------EGASGVNEILLTSNRLE-NVQHKM---------------FKG--------LES 106

Query: 531 LEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGN 586
           L+ L L SN+++  + +D    L ++R L+L  N +  V  + G F  + +   ++L  N
Sbjct: 107 LKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTV--APGAFDTLHSLSTLNLLAN 163

Query: 587 P 587
           P
Sbjct: 164 P 164

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 10/132 (7%)

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISG 391
           L L+ N+F       I     +L K+    N I   I          +  + L+ N +  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 392 EIPIEI-GQLQGLQVLGLAGNEI---PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGN 447
            +  ++   L+ L+ L L  N I          L++++ L    L  N++T   P +F  
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL---SLYDNQITTVAPGAFDT 151

Query: 448 FQSLLSIDLSNN 459
             SL +++L  N
Sbjct: 152 LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGN 363
            N+         L           L  +    N+    I E  G F     ++++ L  N
Sbjct: 41  NNEFTV------LEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSN 91

Query: 364 HIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSL 421
            +   +   +   L SL  L L  N I+  +  +    L  +++L L  N+I    P + 
Sbjct: 92  RL-ENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 422 ANLKKLNQIDLSGN 435
             L  L+ ++L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 35/162 (21%)

Query: 404 QVLGLAGNEIPGGIPNSL-ANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
             L L  NE        +   L +L +I+ S N++T     +F     +  I L++NR+ 
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
            N+   + +        LE++ T+ L  N ++  + N                 F G   
Sbjct: 95  -NVQHKMFK-------GLESLKTLMLRSNRIT-CVGNDS---------------FIG--- 127

Query: 523 NIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFN 563
                L  + +L L  N+++ ++       L +L +LNL  N
Sbjct: 128 -----LSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 33/176 (18%), Positives = 58/176 (32%), Gaps = 42/176 (23%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIY-NMTSLVHLRLASNQLGGEIPYDVRDTLPN 250
           IP  +   +    L L  N       + I+  +  L  +  ++N++           +  
Sbjct: 26  IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI---------TDIE- 73

Query: 251 LLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL-GNLPFLRTYNIGFNKI 309
                           G+    + +  I +T N LE  +   +   L  L+T  +  N+I
Sbjct: 74  ---------------EGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI 117

Query: 310 VSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGN 363
              G+D       S    + +  L+L  NQ    +    G F     LS L L  N
Sbjct: 118 TCVGND-------SFIGLSSVRLLSLYDNQIT-TVAP--GAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 33/151 (21%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPNSLANLKKL 427
           IP           L L+ N  +      I  +L  L+ +  + N+I      +      +
Sbjct: 30  IPQYT------AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83

Query: 428 NQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI 486
           N+I L+ N L   +    F   +SL ++ L +NRI   +       L        +V  +
Sbjct: 84  NEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS-------SVRLL 134

Query: 487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQF 517
            L DN ++   P +     SL  L +  N F
Sbjct: 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 67.3 bits (165), Expect = 6e-12
 Identities = 43/195 (22%), Positives = 75/195 (38%), Gaps = 44/195 (22%)

Query: 650 KISYDELRRATGNFSHENLIGSGSFGSVL--HNERTGSW---------------KSFIAE 692
           +I Y+        F  ++L+G G++G V    ++ TG                    + E
Sbjct: 4   RIVYNISSD----FQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLRE 59

Query: 693 CETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----- 747
            + L++ +H N++ +         +N   + ++ E +    L   I       L      
Sbjct: 60  IKILKHFKHENIITIFNIQRPDSFENFNEVYIIQELMQT-DLHRVI---STQMLSDDHIQ 115

Query: 748 -----ITSALDYLH--NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQS 800
                   A+  LH  N     V+H DLKP N+L++     KV DFGLAR + E   + S
Sbjct: 116 YFIYQTLRAVKVLHGSN-----VIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNS 170

Query: 801 SISSTHVFMGSIGYV 815
             +     M  + +V
Sbjct: 171 EPTGQQSGM--VEFV 183

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 68.4 bits (167), Expect = 6e-12
 Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 46/187 (24%)

Query: 662 NFSHENLIGSGSFGSVLHNER--TGSW-------KSFI-----AEC--------ETLRNV 699
           +FS   +IG G FG V    +  TG         K  I                  +   
Sbjct: 190 DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 249

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSA 751
               +V +  +  + D      L+ + + ++ G L   +                 I   
Sbjct: 250 DCPFIVCMSYAFHTPDK-----LSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILG 304

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L+++HN     VV+ DLKP NILLDE    ++ D GLA    +           H  +G+
Sbjct: 305 LEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDFSK--------KKPHASVGT 353

Query: 812 IGYVPPE 818
            GY+ PE
Sbjct: 354 HGYMAPE 360

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 66.0 bits (162), Expect = 9e-12
 Identities = 38/157 (24%), Positives = 63/157 (40%), Gaps = 36/157 (22%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
            +     IG G++G+V                  L ++  G   S + E   L+ ++H+N
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDITS-------ALDY 754
           +V+L     S        L LV+EF     L  +        +   + S        L +
Sbjct: 63  IVRLHDVLHSDKK-----LTLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGF 116

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
            H+     V+H DLKP N+L++     K+ +FGLAR 
Sbjct: 117 CHSRN---VLHRDLKPQNLLINRNGELKLANFGLARA 150

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 66.1 bits (162), Expect = 9e-12
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 59/180 (32%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F  + L     +G G+FG V+  +  G  K+                       ++E + 
Sbjct: 24  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 83

Query: 696 LRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
           L ++  H N+V L+ +C+      M    ++ EF   G+L  ++  +R            
Sbjct: 84  LIHIGHHLNVVNLLGACTKPGGPLM----VIVEFCKFGNLSTYLRSKRNEFVPYKVAPED 139

Query: 746 ---------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                            +   +++L        +H DL   NILL E+   K+ DFGLAR
Sbjct: 140 LYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLAR 196

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 66.9 bits (163), Expect = 9e-12
 Identities = 33/209 (15%), Positives = 67/209 (32%), Gaps = 57/209 (27%)

Query: 655 ELRRATGNFSHENLIGSGSFGSV-------LHNERTGS------------WKSFI--AEC 693
           E +  +      +L+G G+F  V       L++ +               W+ +I     
Sbjct: 59  EFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLM 118

Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------- 745
           E L+       +K     S+   +N     LV E  S G+L + I+  +           
Sbjct: 119 ERLKPSMQHMFMKF---YSAHLFQN--GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGL 173

Query: 746 -----LDITSALDYLHNDCEVPVVHSDLKPGNILL-----------DEEMTAKVGDFGLA 789
                + +   ++ +H   +  ++H D+KP N +L           D      + D G +
Sbjct: 174 VISFAMRMLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS 230

Query: 790 RFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             +          +       + G+   E
Sbjct: 231 IDMKLFPKGTIFTA----KCETSGFQCVE 255

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 66.5 bits (163), Expect = 9e-12
 Identities = 47/200 (23%), Positives = 75/200 (37%), Gaps = 57/200 (28%)

Query: 667 NLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLI 708
            L+G GS+G V                    ++     K  + E + L+ +RH NLV L+
Sbjct: 31  GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLL 90

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHND 758
             C            LV+EF+ + ++ D +     N LD          I + + + H+ 
Sbjct: 91  EVCKKKKR-----WYLVFEFVDH-TILDDLE-LFPNGLDYQVVQKYLFQIINGIGFCHSH 143

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV--- 815
               ++H D+KP NIL+ +    K+ DFG AR L    +                 V   
Sbjct: 144 N---IIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE-----VYDD-------EVATR 188

Query: 816 ---PPEYGLGERP-STAGDV 831
               PE  +G+     A DV
Sbjct: 189 WYRAPELLVGDVKYGKAVDV 208

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 40/157 (25%), Positives = 61/157 (38%), Gaps = 37/157 (23%)

Query: 662 NFSHENLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL 704
            +     +G G++G V                 L  E  G   + I E   L+ + H N+
Sbjct: 22  KYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNI 81

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDY 754
           V LI    S        L LV+EF+    L   +  E K  L           +   + +
Sbjct: 82  VSLIDVIHSERC-----LTLVFEFMEK-DLKKVLD-ENKTGLQDSQIKIYLYQLLRGVAH 134

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
            H      ++H DLKP N+L++ +   K+ DFGLAR 
Sbjct: 135 CHQHR---ILHRDLKPQNLLINSDGALKLADFGLARA 168

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 65.6 bits (161), Expect = 1e-11
 Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 37/156 (23%)

Query: 662 NFSHENLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL 704
            +     IG G++G V                 L  E  G   + I E   L+ ++H N+
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDY 754
           VKL     +        L LV+E L    L   +    +  L+          + + + Y
Sbjct: 63  VKLYDVIHTKKR-----LVLVFEHLDQ-DLKKLLD-VCEGGLESVTAKSFLLQLLNGIAY 115

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            H+     V+H DLKP N+L++ E   K+ DFGLAR
Sbjct: 116 CHDRR---VLHRDLKPQNLLINREGELKIADFGLAR 148

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 50/212 (23%)

Query: 636 KRVGVSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVL-----HNERTGSW---- 686
           K + ++   K  H K            F    ++G GSFG V                  
Sbjct: 6   KEIAITHHVKEGHEKADPS-------QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMK 58

Query: 687 ---KSFI-----AECETLRNV----RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSL 734
              K+ +        +  R++     H  +VKL  +      +    L L+ +FL  G L
Sbjct: 59  VLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYA-----FQTEGKLYLILDFLRGGDL 113

Query: 735 GDWIHGERKNELD--------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
              +  E     +        +  ALD+LH    + +++ DLKP NILLDEE   K+ DF
Sbjct: 114 FTRLSKEVMFTEEDVKFYLAELALALDHLH---SLGIIYRDLKPENILLDEEGHIKLTDF 170

Query: 787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           GL++   E +D++      + F G++ Y+ PE
Sbjct: 171 GLSK---ESIDHE---KKAYSFCGTVEYMAPE 196

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 36/151 (23%), Positives = 59/151 (39%), Gaps = 36/151 (23%)

Query: 669 IGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
           IG GS+G V                     +     K  + E   L+ ++H NLV L+  
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEV 70

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDITS-------ALDYLHNDCEV 761
                      L LV+E+  + ++   +  +     E  + S       A+++ H     
Sbjct: 71  FRRKRR-----LHLVFEYCDH-TVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHN-- 122

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
             +H D+KP NIL+ +    K+ DFG AR L
Sbjct: 123 -CIHRDVKPENILITKHSVIKLCDFGFARLL 152

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 34/194 (17%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSW----KSFIA------------ECETLRNVRHRN 703
            +   +LIG+GS+G V   +++         K                E   L  + H +
Sbjct: 54  RYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDH 113

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFL---------SNGSLGDWIHGERKNEL-DITSALD 753
           +VK++      D +  + L +V E           +   L + +H   K  L ++   + 
Sbjct: 114 VVKVLDIVIPKDVEKFDELYVVLEIADSDFKKLFRTPVYLTE-LH--IKTLLYNLLVGVK 170

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           Y+H      ++H DLKP N L++++ + KV DFGLAR +    +  S +  +        
Sbjct: 171 YVH---SAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNL 227

Query: 814 YVPPEYGLGERPST 827
              P     +R  T
Sbjct: 228 VTFPHTKNLKRQLT 241

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 65.3 bits (160), Expect = 2e-11
 Identities = 49/178 (27%), Positives = 75/178 (42%), Gaps = 41/178 (23%)

Query: 668 LIGSGSFGSVLHNER--TGSW-------KSFI----------AECETLRNVRHRNLVKLI 708
           L+G G+FG V+      TG +       K  I           E   L+N RH  L  L 
Sbjct: 12  LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 71

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
            +      +  + L  V E+ + G L   +  ER    +        I SAL+YLH    
Sbjct: 72  YA-----FQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLH---S 123

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             VV+ D+K  N++LD++   K+ DFGL +      +  S  ++   F G+  Y+ PE
Sbjct: 124 RDVVYRDIKLENLMLDKDGHIKITDFGLCK------EGISDGATMKTFCGTPEYLAPE 175

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 44/186 (23%), Positives = 69/186 (37%), Gaps = 46/186 (24%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKSF-------------------IAECETLRNVRHR 702
           +F     IG GSFG V   ++  + K +                     E + ++ + H 
Sbjct: 16  HFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHP 75

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSAL 752
            LV L  S      ++ E + +V + L  G L    H ++               +  AL
Sbjct: 76  FLVNLWYS-----FQDEEDMFMVVDLLLGGDL--RYHLQQNVHFKEETVKLFICELVMAL 128

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           DYL       ++H D+KP NILLDE     + DF +A  L          +      G+ 
Sbjct: 129 DYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRE-------TQITTMAGTK 178

Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 179 PYMAPE 184

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 56/179 (31%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F    L     +G+G+FG V+     G  KS                       ++E + 
Sbjct: 20  FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKV 79

Query: 696 LRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY 754
           L  +  H N+V L+ +C+           ++ E+   G L +++  +R + +   ++   
Sbjct: 80  LSYLGNHMNIVNLLGACTIGGP-----TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAI 134

Query: 755 LHNDCEVP-----------------------VVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           + +D                            +H DL   NILL      K+ DFGLAR
Sbjct: 135 MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLAR 193

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 34/151 (22%)

Query: 696 LRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------L 746
           ++ V H+N++ L    T   SL+    + + +V E +   +L   I  E  +E       
Sbjct: 78  MKCVNHKNIIGLLNVFTPQKSLE--EFQDVYIVMELMDA-NLCQVIQMELDHERMSYLLY 134

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            +   + +LH+     ++H DLKP NI++  + T K+ DFGLAR            + T 
Sbjct: 135 QMLCGIKHLHS---AGIIHRDLKPSNIVVKSDCTLKILDFGLAR-----------TAGTS 180

Query: 807 VFMGSIGYV------PPEYGLGERPSTAGDV 831
             M    YV       PE  LG       D+
Sbjct: 181 FMMT--PYVVTRYYRAPEVILGMGYKENVDI 209

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 41/192 (21%)

Query: 655 ELRRATGNFSHENLIGSGSFGSVLHNERTGSWK-------------------SFIAECET 695
           E+R    +F    +IG G+F  V   +   + +                    F  E + 
Sbjct: 55  EVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDV 114

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELD------ 747
           L N   R + +L    +  D      L LV E+   G L   +   GER           
Sbjct: 115 LVNGDRRWITQL--HFAFQDENY---LYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLA 169

Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            I  A+D +H    +  VH D+KP NILLD     ++ DFG    L            + 
Sbjct: 170 EIVMAIDSVH---RLGYVHRDIKPDNILLDRCGHIRLADFGSCLKL-----RADGTVRSL 221

Query: 807 VFMGSIGYVPPE 818
           V +G+  Y+ PE
Sbjct: 222 VAVGTPDYLSPE 233

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 42/175 (24%), Positives = 64/175 (36%), Gaps = 64/175 (36%)

Query: 666 ENLIGSGSFGSVLHNERTGSWKS-----------------------FIAECETLRNV-RH 701
           +++IG G+FG VL        K                        F  E E L  +  H
Sbjct: 30  QDVIGEGNFGQVLK----ARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHH 85

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------- 745
            N++ L+ +C      +  +L L  E+  +G+L D++   R  E                
Sbjct: 86  PNIINLLGACE-----HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLS 140

Query: 746 --------LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                    D+   +DYL          +H DL   NIL+ E   AK+ DFGL+R
Sbjct: 141 SQQLLHFAADVARGMDYLSQKQ-----FIHRDLAARNILVGENYVAKIADFGLSR 190

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 65.4 bits (159), Expect = 6e-11
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 46/187 (24%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSW---------KSFIAE--------CETLRNV----- 699
           +F+   ++G GSFG V+ +ER G+          K  + +         E  + V     
Sbjct: 342 DFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVE--KRVLALPG 399

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSA 751
           +   L +L +       + M+ L  V E+++ G L   I    + +          I   
Sbjct: 400 KPPFLTQLHSC-----FQTMDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIG 454

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L +L       +++ DLK  N++LD E   K+ DFG+ +      +N     +T  F G+
Sbjct: 455 LFFLQ---SKGIIYRDLKLDNVMLDSEGHIKIADFGMCK------ENIWDGVTTKTFCGT 505

Query: 812 IGYVPPE 818
             Y+ PE
Sbjct: 506 PDYIAPE 512

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 63.8 bits (156), Expect = 6e-11
 Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 44/163 (26%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSWKSFIA------------------ECETLRNVRH 701
            F     +G+G++ +V    N+ TG    ++A                  E   ++ ++H
Sbjct: 6   QFKQLEKLGNGTYATVYKGLNKTTGV---YVALKEVKLDSEEGTPSTAIREISLMKELKH 62

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSN---GSLGDWIHGERKNELD----------I 748
            N+V+L     + +      L LV+EF+ N     +     G     L+          +
Sbjct: 63  ENIVRLYDVIHTENK-----LTLVFEFMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQL 117

Query: 749 TSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
              L + H +    ++H DLKP N+L+++    K+GDFGLAR 
Sbjct: 118 LQGLAFCHENK---ILHRDLKPQNLLINKRGQLKLGDFGLARA 157

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 64.5 bits (157), Expect = 7e-11
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 34/151 (22%)

Query: 696 LRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------L 746
           ++ V H+N++ L    T   +L+    + + LV E + + +L   I  E  +E       
Sbjct: 115 MKCVNHKNIISLLNVFTPQKTLE--EFQDVYLVMELM-DANLCQVIQMELDHERMSYLLY 171

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            +   + +LH+     ++H DLKP NI++  + T K+ DFGLAR            + T 
Sbjct: 172 QMLCGIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLAR-----------TAGTS 217

Query: 807 VFMGSIGYV------PPEYGLGERPSTAGDV 831
             M    YV       PE  LG       D+
Sbjct: 218 FMM--TPYVVTRYYRAPEVILGMGYKENVDI 246

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 37/154 (24%), Positives = 60/154 (38%), Gaps = 33/154 (21%)

Query: 669 IGSGSFGSVLH--NERTGSW---KSFIAECETLRN--------VRHRNLVKLITSCSSLD 715
           +G G  G VL   N+RT      K  + +C   R          +  ++V+++    +L 
Sbjct: 26  LGLGINGKVLQIFNKRTQEKFALKM-LQDCPKARREVELHWRASQCPHIVRIVDVYENLY 84

Query: 716 SKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----------DITSALDYLHNDCEVPVV 764
           +     L +V E L  G L   I  +R ++             I  A+ YLH    + + 
Sbjct: 85  AGRKCLL-IVMECLDGGELFSRIQ-DRGDQAFTEREASEIMKSIGEAIQYLH---SINIA 139

Query: 765 HSDLKPGNILL---DEEMTAKVGDFGLARFLLER 795
           H D+KP N+L          K+ DFG A+     
Sbjct: 140 HRDVKPENLLYTSKRPNAILKLTDFGFAKETTGE 173

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 64.0 bits (156), Expect = 9e-11
 Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 44/160 (27%)

Query: 669 IGSGSFGSVL----------------HNERTGSWKSFIAECETLRNVRHRNLVKLITSCS 712
           +G G++G V                   E TG   S   E   LR ++H N++ L     
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFL 88

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-----------------ITSALDYL 755
           S        + L++++  +  L   I   R ++ +                 I   + YL
Sbjct: 89  S---HADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYL 144

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTA----KVGDFGLARF 791
           H +    V+H DLKP NIL+  E       K+ D G AR 
Sbjct: 145 HANW---VLHRDLKPANILVMGEGPERGRVKIADMGFARL 181

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 36/180 (20%), Positives = 66/180 (36%), Gaps = 62/180 (34%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F   NL     +G+G+FG V+     G  K                        ++E + 
Sbjct: 43  FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKI 102

Query: 696 LRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
           + ++ +H N+V L+ +C+         L ++ E+   G L +++  + +           
Sbjct: 103 MSHLGQHENIVNLLGACT----HGGPVL-VITEYCCYGDLLNFLRRKSRVLETDPAFAIA 157

Query: 746 -------------LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                          +   + +L   N      +H D+   N+LL     AK+GDFGLAR
Sbjct: 158 NSTASTRDLLHFSSQVAQGMAFLASKN-----CIHRDVAARNVLLTNGHVAKIGDFGLAR 212

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 37/184 (20%), Positives = 65/184 (35%), Gaps = 61/184 (33%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F  ENL     +GSG+FG V++    G  K+                       ++E + 
Sbjct: 42  FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKM 101

Query: 696 LRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY 754
           +  +  H N+V L+ +C+         + L++E+   G L +++  +R+   +     + 
Sbjct: 102 MTQLGSHENIVNLLGACTLSGP-----IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYEN 156

Query: 755 LHNDCEVP----------------------------VVHSDLKPGNILLDEEMTAKVGDF 786
                E                               VH DL   N+L+      K+ DF
Sbjct: 157 QKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDF 216

Query: 787 GLAR 790
           GLAR
Sbjct: 217 GLAR 220

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 38/184 (20%), Positives = 61/184 (33%), Gaps = 61/184 (33%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F  +NL     +G G FG V+                                 ++E   
Sbjct: 20  FPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNV 79

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYL 755
           L+ V H +++KL  +CS    ++   L L+ E+   GSL  ++   RK       +    
Sbjct: 80  LKQVNHPHVIKLYGACS----QDGPLL-LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSR 134

Query: 756 HNDCEVP-----------------------------VVHSDLKPGNILLDEEMTAKVGDF 786
           ++                                  +VH DL   NIL+ E    K+ DF
Sbjct: 135 NSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDF 194

Query: 787 GLAR 790
           GL+R
Sbjct: 195 GLSR 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 1e-10
 Identities = 99/726 (13%), Positives = 219/726 (30%), Gaps = 221/726 (30%)

Query: 238 GEIPYDVRDTLPNLLD-FIYCFNRFTGKIPGSLHN-LTNIQIIRMTHNLLEGTLPPGLGN 295
           GE  Y  +D L    D F+  F+     +     + L+  +I    H ++          
Sbjct: 12  GEHQYQYKDILSVFEDAFVDNFD--CKDVQDMPKSILSKEEI---DHIIMSKD------- 59

Query: 296 LPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLAL-DGNQFEGKIPESI-GNFSN 353
                T  + F  ++S  ++    F+  +      NY  L    + E + P  +   +  
Sbjct: 60  -AVSGTLRL-FWTLLSKQEEMVQKFVEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI 413
           +  +LY   N ++     ++ RL+                     +L+            
Sbjct: 115 QRDRLY-NDNQVF--AKYNVSRLQPYL------------------KLR------------ 141

Query: 414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID-LSNNRINGNIPKGI--L 470
                 +L  L+    + + G  + G      G  ++ +++D   + ++   +   I  L
Sbjct: 142 -----QALLELRPAKNVLIDG--VLG-----SG--KTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 471 RPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI-PNIVAELK 529
                                        +LKNC S E +L    +    I PN  +   
Sbjct: 188 -----------------------------NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNV-HLKGNPK 588
               + L  +    SI ++L+ L   +      N L        +  N+ N         
Sbjct: 219 HSSNIKLRIH----SIQAELRRLLKSKPYE---NCLL-------VLLNVQNAKAWNA--- 261

Query: 589 LCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKA--KRVGVSALFKV 646
               L C        ++++ +    +   ++         +             S L K 
Sbjct: 262 --FNLSC--------KILLTTRFKQVTDFLSAATTTH-ISLDHHSMTLTPDEVKSLLLKY 310

Query: 647 CHPKISYDELRR--ATGNFSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNL 704
                   +L R   T N    ++I        + +    +W ++       ++V    L
Sbjct: 311 LD--CRPQDLPREVLTTNPRRLSII-----AESIRDGLA-TWDNW-------KHVNCDKL 355

Query: 705 VKLITSC-SSLDSKNME--FLAL------------VYEFLSNGSLGDWIHGERKNELDIT 749
             +I S  + L+       F  L            +   +       W    + + + + 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-------WFDVIKSDVMVV- 407

Query: 750 SALDYLHNDCEVPVVHSDLKPG-----NILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
             ++ LH      +V    K       +I L+ ++  +  ++ L R +++  +   +  S
Sbjct: 408 --VNKLHKYS---LVEKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPKTFDS 461

Query: 805 THV--------FMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV----KWVE---- 848
             +        F   IG+        ER +              F +V    +++E    
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMT-------------LFRMVFLDFRFLEQKIR 508

Query: 849 -SNLPENVLQVLDPELRQL------MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI 901
             +   N    +   L+QL      +  N+ +  +L + ++  +  +  +    S    +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL-ICSKYTDL 567

Query: 902 GIREAL 907
            +R AL
Sbjct: 568 -LRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 8e-09
 Identities = 71/522 (13%), Positives = 147/522 (28%), Gaps = 163/522 (31%)

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP--------LPEEI 477
           +  +      ++   + +    F      +     +  ++PK IL            + +
Sbjct: 10  ETGEHQYQYKDI---LSVFEDAFVD----NFDCKDVQ-DMPKSILSKEEIDHIIMSKDAV 61

Query: 478 SRLENVVTIDLS----------DNSLSGN---LPNSLKN-CKSLEELLMAYNQFSGPIPN 523
           S    +    LS          +  L  N   L + +K   +    +   Y +    + N
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 524 IVAELKGLEVLDLSSNKLSGSIPSDLQNLQ-ALRSLNLTFNNLEGVVPSEGIFRNMSNVH 582
                    V          S       L+ AL  L           P++ +      + 
Sbjct: 122 DNQVFAKYNV----------SRLQPYLKLRQALLELR----------PAKNVL-----ID 156

Query: 583 -LKGNPKLCLQLGCENPRSHGSRLIILSIIVTIMAVIAGCFLIVWPIIVRKRKAKRVGVS 641
            + G+ K  + L  +   S+         +   M      F I W + ++   +    + 
Sbjct: 157 GVLGSGKTWVAL--DVCLSYK--------VQCKMD-----FKIFW-LNLKNCNSPETVLE 200

Query: 642 ALFKVCH---------PKISY----------DELRRATGNFSHEN-LIGSGSFGSVLHN- 680
            L K+ +            S            ELRR   +  +EN L+       VL N 
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-------VLLNV 253

Query: 681 ERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
           +   +W +F   C+ L          L T       +  +FL+      ++ SL      
Sbjct: 254 QNAKAWNAFNLSCKIL----------LTTR----FKQVTDFLSAATT--THISLDHHSMT 297

Query: 741 ERKNE-LDITSALDYLHNDCEVPVVHSDLKP----GNILLDEEMTAKVGDFGLARFLLER 795
              +E   +     YL    +      DL       N      +   + D  LA +  + 
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQ------DLPREVLTTNPRRLSIIAESIRDG-LATW--DN 346

Query: 796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENV 855
             + +    T +   S+  + P                 + F    ++     +++P  +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAE-------------YRKMFD-RLSVFP-PSAHIPTIL 391

Query: 856 LQVL-------DPE--LRQLMTS------NESQTIQLHDCLI 882
           L ++       D    + +L          +  TI +    +
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 4e-07
 Identities = 87/488 (17%), Positives = 141/488 (28%), Gaps = 136/488 (27%)

Query: 11  HVTWLPFGADSASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFG 70
            + WL     ++     T  E L     QI     S      N             ++  
Sbjct: 183 KIFWLNLKNCNSP---ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--------IHSIQ 231

Query: 71  NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL--RVL---- 124
                  L          P+   L  L ++Q   N        +  N F L  ++L    
Sbjct: 232 AE-----LRRLLKS---KPYENCLLVLLNVQ---NA-------KAWNAFNLSCKILLTTR 273

Query: 125 NIS-FNNLQGELPVNIS------KLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGK 177
                + L      +IS       LT  ++  L+   +  R  D     L   +VL    
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----LPR-EVL--TT 325

Query: 178 NLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG 237
           N    SI   IA  I   L+  +N K   +  ++L   + S++             N L 
Sbjct: 326 NPRRLSI---IAESIRDGLATWDNWK--HVNCDKLTTIIESSL-------------NVLE 367

Query: 238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSL-----HNLTNIQIIRMTHNLLEGTLPPG 292
              P + R     L   +  F      IP  L      ++    ++ + + L + +L   
Sbjct: 368 ---PAEYRKMFDRL--SV--FPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--- 416

Query: 293 LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLN------YLALDGNQFEGKIPE 346
           +   P   T +I             L     L N   L+      Y        +  IP 
Sbjct: 417 VEKQPKESTISI---------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP 467

Query: 347 SIGN--FSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ 404
            +    +S      ++ G+H+          L  +  LD  +        +E    Q ++
Sbjct: 468 YLDQYFYS------HI-GHHLKNIEHPERMTLFRMVFLDFRF--------LE----QKIR 508

Query: 405 VLGLAGNEIPGGIPNSLANLKK-LNQI---DLSGNELTGEIPISF----------GNFQS 450
               A N   G I N+L  LK     I   D     L   I + F            +  
Sbjct: 509 HDSTAWNA-SGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTD 566

Query: 451 LLSIDLSN 458
           LL I L  
Sbjct: 567 LLRIALMA 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 8e-07
 Identities = 98/536 (18%), Positives = 182/536 (33%), Gaps = 133/536 (24%)

Query: 83  LEGTISPHIGNLSFLRS-IQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNIS- 140
           +E  +     N  FL S I+ +  + S      I    RL      +N+ Q     N+S 
Sbjct: 83  VEEVLRI---NYKFLMSPIKTEQRQPSMMTRMYIEQRDRL------YNDNQVFAKYNVSR 133

Query: 141 --KLTELK--MLDLMANKI--------TGR--VTDDQLRNLRSLQVLNFGKNLLWGSIPP 186
                +L+  +L+L   K         +G+  V  D   + +    ++F   + W  +  
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--IFW--L-- 187

Query: 187 SIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVH-LRLASNQLGGEIPY--- 242
           ++ N   S  + LE L+ L   I+    +      N+   +H ++    +L    PY   
Sbjct: 188 NLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 243 -----DVRDTLPNLLD-F-IYCFNRFTGKIPGSLHNLT--NIQII------RMTHNLLEG 287
                +V++      + F + C      KI   L  LT    Q+         TH  L+ 
Sbjct: 247 LLVLLNVQN--AKAWNAFNLSC------KI---L--LTTRFKQVTDFLSAATTTHISLDH 293

Query: 288 TLPPGLG-----NLPFLRTYNIGFNKI---VSSGDDEGLSFI-TSLTNSTHL--NYLALD 336
                L      +L  L+  +     +   V + +   LS I  S+ +      N+  ++
Sbjct: 294 -HSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 337 GNQFEGKIPESIGNFS-NELSKLY--LGGNHIY---GKIPASIGRLRSLTLLDLSYNSIS 390
            ++    I  S+      E  K++  L    ++     IP  +     L+L+   +  + 
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTIL-----LSLI---WFDVI 400

Query: 391 GEIPIEIGQLQGLQVLGLA---GNEIPGGIPN-------SLANLKKLNQ--ID------- 431
               + +  +  L    L      E    IP+        L N   L++  +D       
Sbjct: 401 KSDVMVV--VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN 491
              ++L    P     F S +   L N      +   + R +  +   LE  +  D +  
Sbjct: 459 FDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMT--LFRMVFLDFRFLEQKIRHDSTAW 514

Query: 492 SLSGNLPNSL-----------KNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDL 536
           + SG++ N+L            N    E L+ A   F   +P I   L   +  DL
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDL 567

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 45/188 (23%), Positives = 73/188 (38%), Gaps = 47/188 (25%)

Query: 662 NFSHENLIGSGSFGSVL-----HNERTGSWKS--------------FIAECETLRNVRHR 702
           +F    +IG G+FG V      + ++  + K               F  E + L N   +
Sbjct: 75  DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSK 134

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------------DITS 750
            +  L    +  D  N   L LV ++   G L   +    K E             ++  
Sbjct: 135 WITTLH--YAFQDDNN---LYLVMDYYVGGDLLTLL---SKFEDRLPEEMARFYLAEMVI 186

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
           A+D +H    +  VH D+KP NIL+D     ++ DFG    L+E    Q     + V +G
Sbjct: 187 AIDSVHQ---LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQ-----SSVAVG 238

Query: 811 SIGYVPPE 818
           +  Y+ PE
Sbjct: 239 TPDYISPE 246

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 41/199 (20%), Positives = 74/199 (37%), Gaps = 50/199 (25%)

Query: 663 FSHENLIGSGSFGSV---LHNERTGSW---------------KSFIAECETLRNVRHRNL 704
           F   + +G+G+ G V    H   +G                    I E + L       +
Sbjct: 35  FEKISELGAGNGGVVFKVSHK-PSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 93

Query: 705 VK----LITSCSSLDSKNMEFLALVYEFLSNGSLGDWI-HGERKNE-------LDITSAL 752
           V       +            +++  E +  GSL   +    R  E       + +   L
Sbjct: 94  VGFYGAFYSDGE---------ISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGL 144

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
            YL    ++  +H D+KP NIL++     K+ DFG++  L++      S++++ V  G+ 
Sbjct: 145 TYLREKHKI--MHRDVKPSNILVNSRGEIKLCDFGVSGQLID------SMANSFV--GTR 194

Query: 813 GYVPPEYGLGERPSTAGDV 831
            Y+ PE   G   S   D+
Sbjct: 195 SYMSPERLQGTHYSVQSDI 213

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 62/182 (34%)

Query: 663 FSHENL-----IGSGSFGSV----LHNERTGSWKS--------------------FIAEC 693
           F  + L     +G G+FG V             K                      ++E 
Sbjct: 32  FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 91

Query: 694 ETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------- 745
           E ++ + +H+N++ L+ +C+         L ++ E+ S G+L +++   R          
Sbjct: 92  EMMKMIGKHKNIINLLGACTQDGP-----LYVIVEYASKGNLREYLRARRPPGMEYSYDI 146

Query: 746 -----------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL 788
                              +   ++YL        +H DL   N+L+ E    K+ DFGL
Sbjct: 147 NRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGL 203

Query: 789 AR 790
           AR
Sbjct: 204 AR 205

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 61.8 bits (151), Expect = 2e-10
 Identities = 32/175 (18%), Positives = 60/175 (34%), Gaps = 58/175 (33%)

Query: 666 ENLIGSGSFGSV----LHNERTGS------------------WKSFIAECETLRNVRHRN 703
              +G   FG V    L     G                    + F  E      ++H N
Sbjct: 14  MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPN 73

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------------ 745
           +V L+   +         L++++ + S+G L +++     +                   
Sbjct: 74  VVCLLGVVTKDQP-----LSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPP 128

Query: 746 ------LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                   I + ++YL  H+     VVH DL   N+L+ +++  K+ D GL R +
Sbjct: 129 DFVHLVAQIAAGMEYLSSHH-----VVHKDLATRNVLVYDKLNVKISDLGLFREV 178

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 27/155 (17%), Positives = 60/155 (38%), Gaps = 20/155 (12%)

Query: 663 FSHENLIGSGSFGSVLHNERTGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL 722
             H N+I         +       K      +  +     N V        ++    ++L
Sbjct: 57  LDHVNII---KLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYL 113

Query: 723 ALVYEFLSNGSLGDWIHGERKNELDITS------------ALDYLHNDCEVPVVHSDLKP 770
            ++ E++ + +L   +    ++   I              A+ ++H+   + + H D+KP
Sbjct: 114 NVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHS---LGICHRDIKP 169

Query: 771 GNILLDEEM-TAKVGDFGLARFLLERVDNQSSISS 804
            N+L++ +  T K+ DFG A+ L+    + + I S
Sbjct: 170 QNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAYICS 204

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 45/182 (24%)

Query: 668 LIGSGSFGSVL-----HNERTGSW-------KSFI-----------AECETLRNVRHRNL 704
           ++G G +G V          TG         K+ I           AE   L  V+H  +
Sbjct: 24  VLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFI 83

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLH 756
           V LI        K    L L+ E+LS G L   +  E     D        I+ AL +LH
Sbjct: 84  VDLI-YAFQTGGK----LYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLH 138

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
              +  +++ DLKP NI+L+ +   K+ DFGL +   E + +    + TH F G+I Y+ 
Sbjct: 139 ---QKGIIYRDLKPENIMLNHQGHVKLTDFGLCK---ESIHDG---TVTHTFCGTIEYMA 189

Query: 817 PE 818
           PE
Sbjct: 190 PE 191

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 35/156 (22%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSW---------------KSFIAECETLRNVRHRNL 704
            +   + +G G++ +V    ++ T +                 + I E   L++++H N+
Sbjct: 3   TYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANI 62

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDITS-------ALDYL 755
           V L     +  S     L LV+E+L    L  ++   G   N  ++          L Y 
Sbjct: 63  VTLHDIIHTEKS-----LTLVFEYLDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYC 116

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
           H      V+H DLKP N+L++E    K+ DFGLAR 
Sbjct: 117 HRQK---VLHRDLKPQNLLINERGELKLADFGLARA 149

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 62.2 bits (152), Expect = 2e-10
 Identities = 43/181 (23%), Positives = 73/181 (40%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSW---------KSFIAE--------CETLRNV-----RHRNLV 705
           ++G GSFG V+ +ER G+          K  + +         E  + V     +   L 
Sbjct: 27  VLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVE--KRVLALPGKPPFLT 84

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
           +L  SC     +    L  V E+++ G L   I    + +          I   L +L  
Sbjct: 85  QLH-SCFQTMDR----LYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQ- 138

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +++ DLK  N++LD E   K+ DFG+ +   E + +     +T  F G+  Y+ P
Sbjct: 139 --SKGIIYRDLKLDNVMLDSEGHIKIADFGMCK---ENIWDG---VTTKTFCGTPDYIAP 190

Query: 818 E 818
           E
Sbjct: 191 E 191

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 66/184 (35%)

Query: 663 FSHENL-----IGSGSFGSV-------LHNERTGSW-----------------KSFIAEC 693
              + L     +G G+FG V       L  ++                        I+E 
Sbjct: 66  LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEM 125

Query: 694 ETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL------ 746
           E ++ + +H+N++ L+ +C+    ++     ++ E+ S G+L +++   R   L      
Sbjct: 126 EMMKMIGKHKNIINLLGACT----QDGPLY-VIVEYASKGNLREYLQARRPPGLEYSYNP 180

Query: 747 ------------------DITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
                              +   ++YL          +H DL   N+L+ E+   K+ DF
Sbjct: 181 SHNPEEQLSSKDLVSCAYQVARGMEYLASKK-----CIHRDLAARNVLVTEDNVMKIADF 235

Query: 787 GLAR 790
           GLAR
Sbjct: 236 GLAR 239

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 57/173 (32%)

Query: 669 IGSGSFGSV----LHNERTGSWKS-----------------FIAECETLRNVRHRNLVKL 707
           +G G+FG V     +N      K                  F  E E L N++H ++VK 
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------------- 745
              C   D      L +V+E++ +G L  ++     +                       
Sbjct: 83  YGVCGDGDP-----LIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLH 137

Query: 746 --LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
               I S + YL   +      VH DL   N L+   +  K+GDFG++R +  
Sbjct: 138 IASQIASGMVYLASQH-----FVHRDLATRNCLVGANLLVKIGDFGMSRDVYS 185

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 61.9 bits (151), Expect = 3e-10
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 44/167 (26%)

Query: 658 RATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNV 699
            +   +     +G G++G V                  L +E  G   + I E   L+ +
Sbjct: 31  TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL 90

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------IT 749
           +HRN+++L +            L L++E+  N  L  ++  ++  ++           + 
Sbjct: 91  QHRNIIELKSVIHHNHR-----LHLIFEYAEN-DLKKYM--DKNPDVSMRVIKSFLYQLI 142

Query: 750 SALDYLHNDCEVPVVHSDLKPGNILLDEEMTA-----KVGDFGLARF 791
           + +++ H+      +H DLKP N+LL     +     K+GDFGLAR 
Sbjct: 143 NGVNFCHSRR---CLHRDLKPQNLLLSVSDASETPVLKIGDFGLARA 186

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 326 NSTHLNYLALDGNQF-EGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDL 384
             + +  L LD ++  EGK+      F   L  L      +   I A++ +L  L  L+L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEE-LEFLSTINVGL-TSI-ANLPKLNKLKKLEL 71

Query: 385 SYNSISGEIPIEIGQLQGLQVLGLAGNEIPG-GIPNSLANLKKLNQIDLSGNELT 438
           S N +SG + +   +   L  L L+GN+I        L  L+ L  +DL   E+T
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 10/118 (8%)

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
               +  + L N+R N          L       E +  +   +  L+ ++ N L     
Sbjct: 15  TPSDVKELVLDNSRSN-------EGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNK 65

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG-SIPSDLQNLQALRSLNLTFN 563
           L++L ++ N+ SG +  +  +   L  L+LS NK+   S    L+ L+ L+SL+L   
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           ++ L L +   N    ++     + + L+ L      +   I N L  L KL +++LS N
Sbjct: 19  VKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELSDN 74

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
            ++G + +      +L  ++LS N+I        + PL     +LEN+ ++DL +  ++ 
Sbjct: 75  RVSGGLEVLAEKCPNLTHLNLSGNKIKD---LSTIEPL----KKLENLKSLDLFNCEVT- 126

Query: 496 NLPN----SLKNCKSLEEL 510
           NL +      K    L  L
Sbjct: 127 NLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.9 bits (117), Expect = 6e-07
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)

Query: 479 RLENVVTIDLSDNSLS-GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLS 537
              +V  + L ++  + G L       + LE L       +  I N+  +L  L+ L+LS
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IANL-PKLNKLKKLELS 72

Query: 538 SNKLSGSIPSDLQNLQALRSLNLTFNNLE--GVVPSEGIFRNMSNVHLKGNP 587
            N++SG +    +    L  LNL+ N ++    +       N+ ++ L    
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE 124

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 91  IGNLSFLRSIQLQNNKLS--GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKML 148
                 L  +   N  L+   NLP     L +L+ L +S N + G L V   K   L  L
Sbjct: 38  TDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93

Query: 149 DLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
           +L  NKI    T + L+ L +L+ L+    
Sbjct: 94  NLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 17/143 (11%)

Query: 117 NLFRLRVLNISFN-NLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNF 175
               ++ L +  + + +G+L     +  EL+ L  +   +T   +   L  L  L+ L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT---SIANLPKLNKLKKLEL 71

Query: 176 GKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG-TVPSTIYNMTSLVHLRLASN 234
             N         ++  +     +  NL  L+L+ N++   +    +  + +L  L L + 
Sbjct: 72  SDNR--------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 235 QLGGEIPY--DVRDTLPNL--LD 253
           ++     Y  +V   LP L  LD
Sbjct: 124 EVTNLNDYRENVFKLLPQLTYLD 146

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 61.5 bits (150), Expect = 4e-10
 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 46/193 (23%)

Query: 668 LIGSGSFGSVLHNER--TGSW-------KSFIAE--------CETLRNV-----RHRNLV 705
           ++G GSFG V   E   T  +       K  +           E  + V      H  L 
Sbjct: 24  MLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVE--KRVLSLAWEHPFLT 81

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
            +  +      +  E L  V E+L+ G L   I    K +L         I   L +LH 
Sbjct: 82  HMFCT-----FQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLH- 135

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                +V+ DLK  NILLD++   K+ DFG+ +      +N    + T+ F G+  Y+ P
Sbjct: 136 --SKGIVYRDLKLDNILLDKDGHIKIADFGMCK------ENMLGDAKTNTFCGTPDYIAP 187

Query: 818 EYGLGERPSTAGD 830
           E  LG++ + + D
Sbjct: 188 EILLGQKYNHSVD 200

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSW---------KSFIAE--------CETLRNV-----RHRNLV 705
           ++G GSFG V+      +          K  I +         E  + +      H  L 
Sbjct: 30  VLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTE--KRILSLARNHPFLT 87

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
           +L         +  + L  V EF++ G L   I   R+ +          I SAL +LH 
Sbjct: 88  QLFCCF-----QTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLH- 141

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             +  +++ DLK  N+LLD E   K+ DFG+ +   E + N     +T  F G+  Y+ P
Sbjct: 142 --DKGIIYRDLKLDNVLLDHEGHCKLADFGMCK---EGICNG---VTTATFCGTPDYIAP 193

Query: 818 E 818
           E
Sbjct: 194 E 194

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 61.5 bits (150), Expect = 5e-10
 Identities = 54/179 (30%), Positives = 75/179 (41%), Gaps = 42/179 (23%)

Query: 668 LIGSGSFGSVLHNERTGSW---------KSFIAE--------CET---LRNVRHRNLVKL 707
           +IG GSFG VL                 K  I +         E    L+NV+H  LV L
Sbjct: 45  VIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGL 104

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDC 759
             S      +  + L  V ++++ G L   +  ER             I SAL YLH   
Sbjct: 105 HFS-----FQTADKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLH--- 156

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
            + +V+ DLKP NILLD +    + DFGL +      +N    S+T  F G+  Y+ PE
Sbjct: 157 SLNIVYRDLKPENILLDSQGHIVLTDFGLCK------ENIEHNSTTSTFCGTPEYLAPE 209

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 61.7 bits (150), Expect = 6e-10
 Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 36/151 (23%)

Query: 669 IGSGSFGSVL--HNERTGSW----KSFIA------------ECETLRNVRHRNLVKLITS 710
           IG GS+G V   +++ T       K                E   L  ++   +++L   
Sbjct: 34  IGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDL 93

Query: 711 CSSLDSKNMEFLALVYEFL---------SNGSLGDWIHGERKNEL--DITSALDYLHNDC 759
               D    + L +V E           +   L +    E    +  ++    +++H   
Sbjct: 94  IIPDDLLKFDELYIVLEIADSDLKKLFKTPIFLTE----EHIKTILYNLLLGENFIH--- 146

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
           E  ++H DLKP N LL+++ + KV DFGLAR
Sbjct: 147 ESGIIHRDLKPANCLLNQDCSVKVCDFGLAR 177

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 60.8 bits (148), Expect = 6e-10
 Identities = 33/167 (19%), Positives = 52/167 (31%), Gaps = 50/167 (29%)

Query: 669 IGSGSFGSV----LHNERTGS------------------WKSFIAECETLRNVRHRNLVK 706
           +G G+FG V    +                            F+ E   +    H+N+V+
Sbjct: 38  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 97

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------LDITSA 751
            I               ++ E ++ G L  ++   R                   DI   
Sbjct: 98  CIGVSLQSLP-----RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 152

Query: 752 LDYL-HNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLE 794
             YL  N      +H D+   N LL        AK+GDFG+AR +  
Sbjct: 153 CQYLEENHF----IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR 195

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 17/105 (16%)

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           L   RH N++ +     +   + M+ + +V + +    L   +   +   L         
Sbjct: 79  LLRFRHENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLL---KTQHLSNDHICYFL 134

Query: 748 --ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             I   L Y+H+     V+H DLKP N+LL+     K+ DFGLAR
Sbjct: 135 YQILRGLKYIHS---ANVLHRDLKPSNLLLNTTCDLKICDFGLAR 176

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 32/147 (21%), Positives = 55/147 (37%), Gaps = 18/147 (12%)

Query: 88  SPHIGNLSFLRSIQLQNNKLS--GNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTEL 145
           +    N    R + L+  K+    NL      L +   ++ S N ++ +L      L  L
Sbjct: 12  AAQYTNAVRDRELDLRGYKIPVIENLGA---TLDQFDAIDFSDNEIR-KLD-GFPLLRRL 66

Query: 146 KMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
           K L +  N+I  R+ +   + L  L  L    N L       + +L P  L+ L++L  L
Sbjct: 67  KTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL-----VELGDLDP--LASLKSLTYL 118

Query: 206 DLTIN---RLAGTVPSTIYNMTSLVHL 229
            +  N            IY +  +  L
Sbjct: 119 CILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 321 ITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT 380
               TN+     L L G +    I E++G   ++   +    N I  K+      LR L 
Sbjct: 12  AAQYTNAVRDRELDLRGYKIP-VI-ENLGATLDQFDAIDFSDNEI-RKL-DGFPLLRRLK 67

Query: 381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI--PGGIPNSLANLKKLNQIDLSGNELT 438
            L ++ N I          L  L  L L  N +   G + + LA+LK L  + +  N +T
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 12/121 (9%)

Query: 444 SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN 503
            + N      +DL   +I       ++  L   + + +    ID SDN +   L      
Sbjct: 14  QYTNAVRDRELDLRGYKIP------VIENLGATLDQFD---AIDFSDNEIR-KLDG-FPL 62

Query: 504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG-SIPSDLQNLQALRSLNLTF 562
            + L+ LL+  N+       +   L  L  L L++N L        L +L++L  L +  
Sbjct: 63  LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 563 N 563
           N
Sbjct: 123 N 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 5/115 (4%)

Query: 475 EEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL 534
            + +       +DL    +   + N        + +  + N+    +      L+ L+ L
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTL 69

Query: 535 DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE--GVVPSEGIFRNMSNVHLKGNP 587
            +++N++        Q L  L  L LT N+L   G +      ++++ + +  NP
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 124

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 7/105 (6%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLS--GNLPREIGNLFRLRVLNISFNNLQG 133
           L+L  + +   I      L    +I   +N++      P     L RL+ L ++ N +  
Sbjct: 24  LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRLKTLLVNNNRICR 78

Query: 134 ELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
                   L +L  L L  N +      D L +L+SL  L   +N
Sbjct: 79  IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 27/164 (16%), Positives = 50/164 (30%), Gaps = 39/164 (23%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
                 LDL    I   I      L     +  + NEI   +      L++L  + ++ N
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LDG-FPLLRRLKTLLVNNN 74

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
            +             L  + L+NN +              E+  L+              
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSL-------------VELGDLDP------------- 108

Query: 496 NLPNSLKNCKSLEELLMAYNQFSGPIPN----IVAELKGLEVLD 535
                L + KSL  L +  N  +    +    ++ ++  + VLD
Sbjct: 109 -----LASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 14/114 (12%)

Query: 123 VLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWG 182
           ++ ++   ++       +     + LDL   KI   V ++    L     ++F  N +  
Sbjct: 1   MVKLTAELIEQAA--QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEI-- 54

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
                +          L  LK L +  NR+          +  L  L L +N L
Sbjct: 55  ---RKLDGF-----PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 36/158 (22%), Positives = 59/158 (37%), Gaps = 22/158 (13%)

Query: 106 KLSGNLPREI---GNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDD 162
           KL+  L  +     N  R R L++    +   +    + L +   +D   N+I      D
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLD 58

Query: 163 QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA--GTVPSTI 220
               LR L+ L    N         I  +       L +L  L LT N L   G +   +
Sbjct: 59  GFPLLRRLKTLLVNNN--------RICRIGEGLDQALPDLTELILTNNSLVELGDL-DPL 109

Query: 221 YNMTSLVHLRLASNQLGGEIPY--DVRDTLPNL--LDF 254
            ++ SL +L +  N +  +  Y   V   +P +  LDF
Sbjct: 110 ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 60.8 bits (148), Expect = 8e-10
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSW---------KSFIAE--------CETLRNV-----RHRNLV 705
           +IG GS+  VL      +          K  + +         E  ++V      H  LV
Sbjct: 59  VIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTE--KHVFEQASNHPFLV 116

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
            L  SC   +S+    L  V E+++ G L   +  +RK   +        I+ AL+YLH 
Sbjct: 117 GLH-SCFQTESR----LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 170

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +   E +       +T  F G+  Y+ P
Sbjct: 171 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPG---DTTSTFCGTPNYIAP 222

Query: 818 E 818
           E
Sbjct: 223 E 223

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 60.8 bits (148), Expect = 9e-10
 Identities = 35/184 (19%), Positives = 63/184 (34%), Gaps = 66/184 (35%)

Query: 663 FSHENL-----IGSGSFGSV----LHNERTGSWKS--------------------FIAEC 693
           F  + L     +G G FG V             K                      ++E 
Sbjct: 78  FPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEM 137

Query: 694 ETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------- 745
           E ++ + +H+N++ L+ +C+         L ++ E+ S G+L +++   R          
Sbjct: 138 EMMKMIGKHKNIINLLGACTQDGP-----LYVIVEYASKGNLREYLRARRPPGMEYSYDI 192

Query: 746 -----------------LDITSALDYL--HNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
                              +   ++YL          +H DL   N+L+ E    K+ DF
Sbjct: 193 NRVPEEQMTFKDLVSCTYQLARGMEYLASQK-----CIHRDLAARNVLVTENNVMKIADF 247

Query: 787 GLAR 790
           GLAR
Sbjct: 248 GLAR 251

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 41/183 (22%), Positives = 77/183 (42%), Gaps = 45/183 (24%)

Query: 668 LIGSGSFGSVL-----HNERTGSW-------KSFI-----------AECETLRNVRHRN- 703
           ++G+G++G V          TG         K+ I            E + L ++R    
Sbjct: 61  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 120

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYL 755
           LV L  +      +    L L+ ++++ G L   +    +            I  AL++L
Sbjct: 121 LVTLHYA-----FQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHL 175

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H   ++ +++ D+K  NILLD      + DFGL++   E V +++  +    F G+I Y+
Sbjct: 176 H---KLGIIYRDIKLENILLDSNGHVVLTDFGLSK---EFVADETERAYD--FCGTIEYM 227

Query: 816 PPE 818
            P+
Sbjct: 228 APD 230

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 60.4 bits (147), Expect = 9e-10
 Identities = 40/158 (25%), Positives = 54/158 (34%), Gaps = 41/158 (25%)

Query: 669 IGSGSFGSV---------------LHNERTGSWKSFIAECET-----------LRNVRHR 702
           I SGS+G+V               + N  +      I                L +  H 
Sbjct: 30  ISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHP 89

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSAL 752
           N++ L       +   M  L LV E +    L   IH  ++  +           I   L
Sbjct: 90  NILGLRDIFVHFEEPAMHKLYLVTELMRT-DLAQVIHD-QRIVISPQHIQYFMYHILLGL 147

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             LH      VVH DL PGNILL +     + DF LAR
Sbjct: 148 HVLHE---AGVVHRDLHPGNILLADNNDITICDFNLAR 182

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 60.3 bits (147), Expect = 9e-10
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 46/181 (25%)

Query: 668 LIGSGSFGSVLHNERTGSW---------KSFIAE--------CETLRNV-----RHRNLV 705
           +IG GS+  VL      +          K  + +         E  ++V      H  LV
Sbjct: 16  VIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTE--KHVFEQASNHPFLV 73

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHN 757
            L  SC   +S+    L  V E+++ G L   +  +RK   +        I+ AL+YLH 
Sbjct: 74  GLH-SCFQTESR----LFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLH- 127

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
             E  +++ DLK  N+LLD E   K+ D+G+ +   E +       +T  F G+  Y+ P
Sbjct: 128 --ERGIIYRDLKLDNVLLDSEGHIKLTDYGMCK---EGLRPG---DTTSTFCGTPNYIAP 179

Query: 818 E 818
           E
Sbjct: 180 E 180

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 32/170 (18%), Positives = 60/170 (35%), Gaps = 52/170 (30%)

Query: 669 IGSGSFGSVLHNERTGSWKS---------------------FIAECETLRNVRHRNLVKL 707
           +G G+FG V   E                            F  E E L  ++H+++V+ 
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------------- 745
              C+         L +V+E++ +G L  ++     +                       
Sbjct: 109 FGVCTEGRP-----LLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAV 163

Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE 794
              + + + YL     +  VH DL   N L+ + +  K+GDFG++R +  
Sbjct: 164 ASQVAAGMVYLA---GLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYS 210

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 34/104 (32%), Positives = 51/104 (49%), Gaps = 15/104 (14%)

Query: 696 LRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------L 746
           L++++H N++ L    T  SSL   N     LV  F+    L   +  +   E       
Sbjct: 77  LKHMQHENVIGLLDVFTPASSLR--NFYDFYLVMPFM-QTDLQKIMGLKFSEEKIQYLVY 133

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
            +   L Y+H+     VVH DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 134 QMLKGLKYIHS---AGVVHRDLKPGNLAVNEDCELKILDFGLAR 174

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 22/108 (20%)

Query: 696 LRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----- 747
           L++++H N++ L    T   SL+      + LV   +    L + +   +  +L      
Sbjct: 82  LKHMKHENVIGLLDVFTPARSLE--EFNDVYLVTHLM-GADLNNIV---KCQKLTDDHVQ 135

Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                I   L Y+H+     ++H DLKP N+ ++E+   K+ DFGLAR
Sbjct: 136 FLIYQILRGLKYIHS---ADIIHRDLKPSNLAVNEDCELKILDFGLAR 180

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 59.7 bits (145), Expect = 2e-09
 Identities = 33/167 (19%), Positives = 55/167 (32%), Gaps = 50/167 (29%)

Query: 669 IGSGSFGSV----LHNERTGS------------------WKSFIAECETLRNVRHRNLVK 706
           +G G+FG V    +                            F+ E   +    H+N+V+
Sbjct: 79  LGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVR 138

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------------LDITSA 751
            I        +++    ++ E ++ G L  ++   R                   DI   
Sbjct: 139 CIGVS----LQSLPRF-ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG 193

Query: 752 LDYL-HNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLE 794
             YL  N      +H D+   N LL        AK+GDFG+AR +  
Sbjct: 194 CQYLEENHF----IHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYR 236

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 45/165 (27%), Positives = 65/165 (39%), Gaps = 19/165 (11%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGE 134
           L+L S GL          L+ L  + L  N+L   L   +  +L  L  L ++ N L   
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-S 97

Query: 135 LPVNI-SKLTELKMLDLMANKITG---RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIAN 190
           LP+ +   LT+L  L L  N++      V D     L  L+ L    N L  SIP     
Sbjct: 98  LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD----RLTKLKELRLNTNQL-QSIPAGA-- 150

Query: 191 LIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ 235
                  +L NL+ L L+ N+L          +  L  + L  NQ
Sbjct: 151 -----FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 22/168 (13%)

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEI-- 413
           KL L    +     A+   L  LT L+L YN +   +   +   L  L  LGLA N++  
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97

Query: 414 -PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI---DLSNNRINGNIPKGI 469
            P G+ + L  L KL    L GN+L     +  G F  L  +    L+ N++  +IP G 
Sbjct: 98  LPLGVFDHLTQLDKL---YLGGNQLKS---LPSGVFDRLTKLKELRLNTNQLQ-SIPAGA 150

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQF 517
                    +L N+ T+ LS N L      +      L+ + +  NQF
Sbjct: 151 FD-------KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 39/178 (21%), Positives = 65/178 (36%), Gaps = 24/178 (13%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI---PGGIPNSLANLK 425
           +P+ I        LDL    ++         L  L  L L  N++     G+ + L  L 
Sbjct: 29  VPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
            L    L+ N+L       F +   L  + L  N++   +P G+         RL  +  
Sbjct: 87  TLG---LANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFD-------RLTKLKE 135

Query: 486 IDLSDNSLSGNLPN----SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
           + L+ N L  ++P      L N   L+ L ++ NQ           L  L+ + L  N
Sbjct: 136 LRLNTNQLQ-SIPAGAFDKLTN---LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 45/206 (21%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           S+P  I    P+D  +L      DL    LA    +T   +T L  L L  NQL   +  
Sbjct: 28  SVPSGI----PADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSA 76

Query: 243 DVRDTLPNLLDFIYCF-NRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRT 301
            V D L   L  +    N+      G   +LT +  + +  N L+ +LP G+        
Sbjct: 77  GVFDDLTE-LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGV-------- 126

Query: 302 YNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG 361
               F+++                  T L  L L+ NQ +  IP    +    L  L L 
Sbjct: 127 ----FDRL------------------TKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163

Query: 362 GNHIYGKIPASIGRLRSLTLLDLSYN 387
            N +      +  RL  L  + L  N
Sbjct: 164 TNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 45/191 (23%)

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
           + L L    +      +   L KL  ++L  N+L                          
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ------------------------- 72

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDN---SLSGNLPNSLKNCKSLEELLMAYNQFSGP 520
            +  G+          L  + T+ L++N   SL   + + L     L++L +  NQ    
Sbjct: 73  TLSAGVF-------DDLTELGTLGLANNQLASLPLGVFDHLTQ---LDKLYLGGNQLKSL 122

Query: 521 IPNIVAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMS 579
              +   L  L+ L L++N+L  SIP+     L  L++L+L+ N L+ V    G F  + 
Sbjct: 123 PSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV--PHGAFDRLG 179

Query: 580 N---VHLKGNP 587
               + L GN 
Sbjct: 180 KLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 44.7 bits (106), Expect = 6e-05
 Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 17/126 (13%)

Query: 465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI 524
           +P GI    P +  +L      DL    L+     + +    L  L + YNQ       +
Sbjct: 29  VPSGI----PADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78

Query: 525 VAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNV-- 581
             +L  L  L L++N+L+ S+P  +  +L  L  L L  N L+ +    G+F  ++ +  
Sbjct: 79  FDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSL--PSGVFDRLTKLKE 135

Query: 582 -HLKGN 586
             L  N
Sbjct: 136 LRLNTN 141

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 59.1 bits (144), Expect = 2e-09
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 39/167 (23%)

Query: 655 ELRRATGNFSHENLIGSGSFGSV------------------LHNE---RTGSWKSFIAEC 693
           +++     +   + +G G F +V                  L +    + G  ++ + E 
Sbjct: 4   DVKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREI 63

Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWI--HGERKNELDITS- 750
           + L+ + H N++ L+ +     +     ++LV++F+    L   I  +        I + 
Sbjct: 64  KLLQELSHPNIIGLLDAFGHKSN-----ISLVFDFMET-DLEVIIKDNSLVLTPSHIKAY 117

Query: 751 ------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF 791
                  L+YLH      ++H DLKP N+LLDE    K+ DFGLA+ 
Sbjct: 118 MLMTLQGLEYLHQHW---ILHRDLKPNNLLLDENGVLKLADFGLAKS 161

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 22/108 (20%)

Query: 696 LRNVRHRNLVKL---ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----- 747
           L+++RH N++ L    T   +LD  +     LV  F+    LG  +   +  +L      
Sbjct: 78  LKHMRHENVIGLLDVFTPDETLD--DFTDFYLVMPFM-GTDLGKLM---KHEKLGEDRIQ 131

Query: 748 -----ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                +   L Y+H      ++H DLKPGN+ ++E+   K+ DFGLAR
Sbjct: 132 FLVYQMLKGLRYIHA---AGIIHRDLKPGNLAVNEDCELKILDFGLAR 176

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 326 NSTHLNYLALDGNQF-EGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDL 384
               +  L LD  +  +GKI      F N L  L L    +   + +++ +L  L  L+L
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVN-LEFLSLINVGL-ISV-SNLPKLPKLKKLEL 78

Query: 385 SYNSISGEIPIEIGQLQGLQVLGLAGNEIPG-GIPNSLANLKKLNQIDLSGNELT 438
           S N I G + +   +L  L  L L+GN++        L  L+ L  +DL   E+T
Sbjct: 79  SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           +R L L D   ++  G+I     +   L+ L L    +   + N L  L KL +++LS N
Sbjct: 26  VRELVL-DNCKSND-GKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELSEN 81

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG 495
            + G + +      +L  ++LS N++        L PL     +LE + ++DL +  ++ 
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKD---ISTLEPL----KKLECLKSLDLFNCEVT- 133

Query: 496 NLPN----SLKNCKSLEEL 510
           NL +      K    L  L
Sbjct: 134 NLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 7/106 (6%)

Query: 76  LNLSSFGL-EGTISPHIGNLSFLRSIQLQNNKLS--GNLPREIGNLFRLRVLNISFNNLQ 132
           L L +    +G I         L  + L N  L    NLP     L +L+ L +S N + 
Sbjct: 29  LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLELSENRIF 84

Query: 133 GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN 178
           G L +   KL  L  L+L  NK+    T + L+ L  L+ L+    
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 12/119 (10%)

Query: 423 NLKKLNQIDLSGNELT-GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLE 481
               + ++ L   +   G+I      F +L  + L N  +       +       + +L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISV-----SNLPKLP 71

Query: 482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP-IPNIVAELKGLEVLDLSSN 539
            +  ++LS+N + G L    +   +L  L ++ N+         + +L+ L+ LDL + 
Sbjct: 72  KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 23/112 (20%), Positives = 45/112 (40%), Gaps = 5/112 (4%)

Query: 479 RLENVVTIDLSDNSLS-GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLS 537
               V  + L +   + G +        +LE L +        + N+  +L  L+ L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNL-PKLPKLKKLELS 79

Query: 538 SNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGI--FRNMSNVHLKGNP 587
            N++ G +    + L  L  LNL+ N L+ +   E +     + ++ L    
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 30/145 (20%), Positives = 53/145 (36%), Gaps = 19/145 (13%)

Query: 117 NLFRLRVLNISFNNLQ-GELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNF 175
               +R L +       G++    ++   L+ L L+   +    +   L  L  L+ L  
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI---SVSNLPKLPKLKKLEL 78

Query: 176 GKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA--GTVPSTIYNMTSLVHLRLAS 233
            +N         I   +     +L NL  L+L+ N+L    T+   +  +  L  L L +
Sbjct: 79  SEN--------RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFN 129

Query: 234 NQLGGEIPY--DVRDTLPNL--LDF 254
            ++     Y   V   LP L  LD 
Sbjct: 130 CEVTNLNDYRESVFKLLPQLTYLDG 154

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 35/146 (23%), Positives = 62/146 (42%), Gaps = 18/146 (12%)

Query: 420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR 479
                +K+ ++      +  ++  +    ++   + LS N I   I           +S 
Sbjct: 21  VATEAEKV-ELHGMIPPIE-KMDATLSTLKACKHLALSTNNI-EKI---------SSLSG 68

Query: 480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
           +EN+  + L  N +   + N      +LEEL ++YNQ +  +  I  +L  L VL +S+N
Sbjct: 69  MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LSGI-EKLVNLRVLYMSNN 125

Query: 540 KLS--GSIPSDLQNLQALRSLNLTFN 563
           K++  G I   L  L  L  L L  N
Sbjct: 126 KITNWGEI-DKLAALDKLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 25/168 (14%)

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIE-IGQLQGLQVLGLAGNE 412
           E  +L+     I  K+ A++  L++   L LS N+I     I  +  ++ L++L L  N 
Sbjct: 26  EKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL 81

Query: 413 IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP 472
           I   I N  A    L ++ +S N++   +        +L  + +SNN+I       I   
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITN--WGEI--- 133

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLPNS----------LKNCKSLEEL 510
             ++++ L+ +  + L+ N L  +   +          +K   +L++L
Sbjct: 134 --DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
             +S+++ +     ++G IP   +  +   +S L+    + LS N++   + + L   ++
Sbjct: 16  ERKSVVATEAEKVELHGMIPP--IEKMDATLSTLKACKHLALSTNNIE-KISS-LSGMEN 71

Query: 507 LEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
           L  L +  N     I N+ A    LE L +S N+++ S+ S ++ L  LR L ++ N + 
Sbjct: 72  LRILSLGRNLIKK-IENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKIT 128

Query: 567 GVVPSEGI--FRNMSNVHLKGNPKLCLQLGCENPRSHGSRLIILSII 611
                + +     + ++ L GNP        EN  +   R+ ++  +
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNP--LYNDYKENNATSEYRIEVVKRL 173

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 40/158 (25%), Positives = 60/158 (37%), Gaps = 26/158 (16%)

Query: 72  RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNK-----------------LSGNLPRE 114
             + L+     +E  +   +  L   + + L  N                  L  NL ++
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK 84

Query: 115 IGNLF----RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL 170
           I NL      L  L IS+N +   L   I KL  L++L +  NKIT     D+L  L  L
Sbjct: 85  IENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 171 QVLNFGKNLLWGSIPP--SIANLIPSDLSRLENLKVLD 206
           + L    N L+       + +      + RL NLK LD
Sbjct: 143 EDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 37/173 (21%), Positives = 67/173 (38%), Gaps = 29/173 (16%)

Query: 99  SIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQG-ELPVNISKLTELKMLDLMANKITG 157
            +      +   +   +  L   + L +S NN++      ++S +  L++L L  N I  
Sbjct: 29  ELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKIS---SLSGMENLRILSLGRNLIK- 83

Query: 158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP 217
              ++      +L+ L    N         IA+L  S + +L NL+VL ++ N++     
Sbjct: 84  -KIENLDAVADTLEELWISYNQ--------IASL--SGIEKLVNLRVLYMSNNKITNWGE 132

Query: 218 -STIYNMTSLVHLRLASNQLGGEIPYD---------VRDTLPNL--LDFIYCF 258
              +  +  L  L LA N L  +   +         V   LPNL  LD +   
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD 185

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLR---LASNQLGGEIPYDVRDTL 248
           + + LS L+  K L L+ N +       I +++ + +LR   L  N +            
Sbjct: 40  MDATLSTLKACKHLALSTNNI-----EKISSLSGMENLRILSLGRNLIK----------- 83

Query: 249 PNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNK 308
                          KI         ++ + +++N +  +L  G+  L  LR   +  NK
Sbjct: 84  ---------------KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNK 126

Query: 309 IVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPES 347
           I           I  L     L  L L GN       E+
Sbjct: 127 I------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 61/184 (33%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           +   N+     IG G+FG V      G                          F  E   
Sbjct: 44  YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAAL 103

Query: 696 LRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYL 755
           +    + N+VKL+  C+         + L++E+++ G L +++     + +   S  D  
Sbjct: 104 MAEFDNPNIVKLLGVCAVGKP-----MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLS 158

Query: 756 HNDCEVPV-----------------------------VHSDLKPGNILLDEEMTAKVGDF 786
                                                VH DL   N L+ E M  K+ DF
Sbjct: 159 TRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADF 218

Query: 787 GLAR 790
           GL+R
Sbjct: 219 GLSR 222

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 30/145 (20%)

Query: 669 IGSGSFGSV--LHNERTG-----------SWKSFIAECETLRNVR-HRNLVKLITSCSSL 714
           +G G +  V    N                 K    E + L N+R   N++ L       
Sbjct: 44  LGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDP 103

Query: 715 DSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS-------ALDYLHNDCEVPVVHSD 767
            S+     ALV+E ++N         +   + DI         ALDY H    + ++H D
Sbjct: 104 VSRT---PALVFEHVNNTDFKQLY--QTLTDYDIRFYMYEILKALDYCH---SMGIMHRD 155

Query: 768 LKPGNILLD-EEMTAKVGDFGLARF 791
           +KP N+++D E    ++ D+GLA F
Sbjct: 156 VKPHNVMIDHEHRKLRLIDWGLAEF 180

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 39/186 (20%), Positives = 69/186 (37%), Gaps = 57/186 (30%)

Query: 669 IGSGSFGSV---LHNERTGSWKSFIA----ECETLRNVRHRNLVKLITSCSSLDSKN--- 718
           +G G++G V    H   +G     +A            + R L+ L  S  ++D      
Sbjct: 15  LGRGAYGVVEKMRHV-PSGQ---IMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVT 70

Query: 719 --------------MEFLALVYEFLSNGSLGD-----WIHGERKNE-------LDITSAL 752
                         ME +        + SL          G+   E       + I  AL
Sbjct: 71  FYGALFREGDVWICMELM--------DTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKAL 122

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           ++LH+  ++ V+H D+KP N+L++     K+ DFG++ +L         ++      G  
Sbjct: 123 EHLHS--KLSVIHRDVKPSNVLINALGQVKMCDFGISGYL------VDDVAKDI-DAGCK 173

Query: 813 GYVPPE 818
            Y+ PE
Sbjct: 174 PYMAPE 179

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 57.4 bits (139), Expect = 8e-09
 Identities = 39/172 (22%), Positives = 61/172 (35%), Gaps = 32/172 (18%)

Query: 669 IGSGSFGSV---LHNERTGSWKSF-IAECETLRNVRHRNLVKLITSCSSLDSKNM-EF-- 721
           +GSG+ G V       +TG   +         +    R L+ L     S D   + +   
Sbjct: 33  MGSGTCGQVWKMRFR-KTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFG 91

Query: 722 -------LALVYEFLSNGSLGDWIH-GERKNE-------LDITSALDYLHNDCEVPVVHS 766
                  + +  E +   +            E       + I  AL YL    +  V+H 
Sbjct: 92  TFITNTDVFIAMELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKE--KHGVIHR 149

Query: 767 DLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
           D+KP NILLDE    K+ DFG++  L+         +      G   Y+ PE
Sbjct: 150 DVKPSNILLDERGQIKLCDFGISGRLV------DDKAKDR-SAGCAAYMAPE 194

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 57.4 bits (138), Expect = 9e-09
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 134 ELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIP 193
           +   ++     L  L +   +    +    LR L  L+ L   K+ L   + P       
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDA----- 75

Query: 194 SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
                   L  L+L+ N L  ++        SL  L L+ N L
Sbjct: 76  --FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.4 bits (125), Expect = 3e-07
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 2/97 (2%)

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPN-SLKNCKSLEELLMAYNQFSGPIPNIVAEL 528
                  +   EN+  + + +     +L    L+    L  L +  +      P+     
Sbjct: 20  ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFT 79

Query: 529 KGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
             L  L+LS N L  S+        +L+ L L+ N L
Sbjct: 80  PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.9 bits (121), Expect = 9e-07
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIE-IGQLQGLQVLGLAGNEIPGGIPNSLANLKKL 427
               +    +LT L +        + +  +  L  L+ L +  + +    P++     +L
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82

Query: 428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
           ++++LS N L      +     SL  + LS N ++
Sbjct: 83  SRLNLSFNALESLSWKTVQGL-SLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 440 EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPN 499
           +        ++L  + + N +   ++    LR L         +  + +  + L    P+
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLG-------ELRNLTIVKSGLRFVAPD 74

Query: 500 SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL 541
           +      L  L +++N         V  L  L+ L LS N L
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 6e-05
 Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 162 DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY 221
             L    +L  L              + +L   DL  L  L+ L +  + L    P   +
Sbjct: 25  HHLPGAENLTELYIENQ-------QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH 77

Query: 222 NMTSLVHLRLASNQLGGEIPYDVRDTLP 249
               L  L L+ N L   + +     L 
Sbjct: 78  FTPRLSRLNLSFNAL-ESLSWKTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 10/112 (8%)

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-LGNLPFLRTYNIGFNKIVSSG 313
           + C           L    N+  + + +      L    L  L  LR   I  + +    
Sbjct: 13  LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA 72

Query: 314 DDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHI 365
            D       +   +  L+ L L  N  E    +++   S  L +L L GN +
Sbjct: 73  PD-------AFHFTPRLSRLNLSFNALESLSWKTVQGLS--LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 1/85 (1%)

Query: 209 INRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGS 268
               A      +    +L  L + + Q    +       L  L +     +      P +
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 269 LHNLTNIQIIRMTHNLLEGTLPPGL 293
            H    +  + ++ N LE +L    
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKT 99

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 55.7 bits (135), Expect = 3e-08
 Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 43/174 (24%)

Query: 663 FSHENLIGSGSFGSVL--HNERTGS---------WKSFIA-----ECETLRNVRHRNLVK 706
           +     +G G  G V    +                         E + +R + H N+VK
Sbjct: 13  YMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVK 72

Query: 707 LI---------TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD---------- 747
           +           +        +  + +V E++    L + +    +  L           
Sbjct: 73  VFEILGPSGSQLTDDVGSLTELNSVYIVQEYMET-DLANVL---EQGPLLEEHARLFMYQ 128

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERVDNQS 800
           +   L Y+H+     V+H DLKP N+ ++ E++  K+GDFGLAR +     ++ 
Sbjct: 129 LLRGLKYIHS---ANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKG 179

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 15/110 (13%)

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIG---QLQGLQVLGLAGNE- 412
           +LYL GN     +P  +   + LTL+DLS N IS    +       +  L  L L+ N  
Sbjct: 35  ELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS---TLSNQSFSNMTQLLTLILSYNRL 90

Query: 413 --IPGGIPNSLANLKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSNN 459
             IP    + L +L+ L    L GN+++  +P  +F +  +L  + +  N
Sbjct: 91  RCIPPRTFDGLKSLRLL---SLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 18/127 (14%)

Query: 465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNI 524
           +PKGI    P +++ L       L  N  +  +P  L N K L  + ++ N+ S      
Sbjct: 25  LPKGI----PRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQS 73

Query: 525 VAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN--- 580
            + +  L  L LS N+L   IP      L++LR L+L  N++  VVP EG F ++S    
Sbjct: 74  FSNMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVP-EGAFNDLSALSH 130

Query: 581 VHLKGNP 587
           + +  NP
Sbjct: 131 LAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 12/116 (10%)

Query: 122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW 181
             L +  N     +P  +S    L ++DL  N+I+  +++    N+  L  L    N L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRL- 90

Query: 182 GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY-NMTSLVHLRLASNQL 236
             IPP            L++L++L L  N ++  VP   + ++++L HL + +N L
Sbjct: 91  RCIPPRT-------FDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPL 138

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 42/187 (22%), Positives = 66/187 (35%), Gaps = 58/187 (31%)

Query: 669 IGSGSFGSV---LHNERTGSWKSFIA----ECETLRNVRHRNLVKLITSCSSLDSKN--- 718
           IG G++GSV   +H   +G     +A            + + L+ L     S D      
Sbjct: 30  IGRGAYGSVNKMVHK-PSGQ---IMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQ 85

Query: 719 --------------MEFLALVYEFLSNGSLGD------WIHGERKNE-------LDITSA 751
                         ME ++         S          +  +   E       L    A
Sbjct: 86  FYGALFREGDCWICMELMS--------TSFDKFYKYVYSVLDDVIPEEILGKITLATVKA 137

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L++L  + ++  +H D+KP NILLD     K+ DFG++  L        SI+ T    G 
Sbjct: 138 LNHLKENLKI--IHRDIKPSNILLDRSGNIKLCDFGISGQL------VDSIAKTR-DAGC 188

Query: 812 IGYVPPE 818
             Y+ PE
Sbjct: 189 RPYMAPE 195

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 20/143 (13%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKIT 156
           + + L +N+++   P    +L  L+ L +  N L   LPV +   LT+L +LDL  N++T
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 157 G---RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA 213
                V D     L  L+ L    N L   +P  I         RL +L  L L  N+L 
Sbjct: 102 VLPSAVFD----RLVHLKELFMCCNKL-TELPRGI--------ERLTHLTHLALDQNQLK 148

Query: 214 GTVPSTIY-NMTSLVHLRLASNQ 235
            ++P   +  ++SL H  L  N 
Sbjct: 149 -SIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 28/133 (21%)

Query: 328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSY 386
            +L  L L  NQ    +P  + +   +L+ L LG N +   +P+++  RL  L  L +  
Sbjct: 64  INLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCC 121

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           N           +L                +P  +  L  L  + L  N+L      +F 
Sbjct: 122 N-----------KLTE--------------LPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 447 NFQSLLSIDLSNN 459
              SL    L  N
Sbjct: 157 RLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI---PGGIPNSLANLK 425
           +PA I    +  +L L  N I+   P     L  L+ L L  N++   P G+ +SL  L 
Sbjct: 34  VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
            L+   L  N+LT      F     L  + +  N+         L  LP  I RL ++  
Sbjct: 92  VLD---LGTNQLTVLPSAVFDRLVHLKELFMCCNK---------LTELPRGIERLTHLTH 139

Query: 486 IDLSDNSLSGNLPNSLKNCKSLEEL 510
           + L  N L      +     SL   
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLTHA 164

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 44/178 (24%)

Query: 413 IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP 472
           +P GIP +   L       L  N++T   P  F +  +L  + L +N+         L  
Sbjct: 34  VPAGIPTNAQIL------YLHDNQITKLEPGVFDSLINLKELYLGSNQ---------LGA 78

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLE 532
           LP  +                     +SL     L  L +  NQ +     +   L  L+
Sbjct: 79  LPVGV--------------------FDSLTQ---LTVLDLGTNQLTVLPSAVFDRLVHLK 115

Query: 533 VLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSN---VHLKGNP 587
            L +  NKL+  +P  ++ L  L  L L  N L+ +    G F  +S+    +L GNP
Sbjct: 116 ELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI--PHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 12/129 (9%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           S+P  I    P++       ++L L  N++    P    ++ +L  L L SNQL G +P 
Sbjct: 33  SVPAGI----PTNA------QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPV 81

Query: 243 DVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTY 302
            V D+L  L       N+ T         L +++ + M  N L   LP G+  L  L   
Sbjct: 82  GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHL 140

Query: 303 NIGFNKIVS 311
            +  N++ S
Sbjct: 141 ALDQNQLKS 149

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 55.1 bits (133), Expect = 6e-08
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 43/153 (28%)

Query: 669 IGSGSFGSVL--HNERTGS-------WKSFIAECETLRNVR----------HRNLVKLIT 709
           +G G++G V    + RTG        + +F    +  R  R          H N+V L+ 
Sbjct: 17  LGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLL- 75

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLH--N 757
             + L + N   + LV++++    L   I     N L+          +   + YLH   
Sbjct: 76  --NVLRADNDRDVYLVFDYMET-DLHAVIRA---NILEPVHKQYVVYQLIKVIKYLHSGG 129

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
                ++H D+KP NILL+ E   KV DFGL+R
Sbjct: 130 -----LLHRDMKPSNILLNAECHVKVADFGLSR 157

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 54.7 bits (132), Expect = 7e-08
 Identities = 41/211 (19%), Positives = 72/211 (34%), Gaps = 65/211 (30%)

Query: 668 LIGSGSFGSVL--HNERTGSW-------------KSFIAECETLRNVR-----------H 701
            +G G F +V    +    +              ++   E + L+ V             
Sbjct: 26  KLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGA 85

Query: 702 RNLVKLITSCSSLDS-----KNMEFLALVYEFLSNGSLGDWIHGERKNELDIT------- 749
            +++KL      LD       N   + +V+E L   +L   I       + +        
Sbjct: 86  NHILKL------LDHFNHKGPNGVHVVMVFEVLGE-NLLALIKKYEHRGIPLIYVKQISK 138

Query: 750 ---SALDYLHNDCEVPVVHSDLKPGNILLDEE------MTAKVGDFGLARFLLERVDNQS 800
                LDY+H  C +  +H+D+KP N+L++        +  K+ D G A +  E     +
Sbjct: 139 QLLLGLDYMHRRCGI--IHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY--TN 194

Query: 801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDV 831
           SI +         Y  PE  LG       D+
Sbjct: 195 SIQTRE-------YRSPEVLLGAPWGCGADI 218

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 19/143 (13%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLMANKIT 156
             + L+ N L          L  L  L +  N LQ  LP  + +KLT L  L+L  N++ 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 157 G---RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA 213
                V D     L  L+ L    N L  S+P  +         +L  LK L L  N+L 
Sbjct: 90  SLPNGVFD----KLTQLKELALNTNQL-QSLPDGV-------FDKLTQLKDLRLYQNQLK 137

Query: 214 GTVPSTIY-NMTSLVHLRLASNQ 235
            +VP  ++  +TSL ++ L  N 
Sbjct: 138 -SVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 18/140 (12%)

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEI-- 413
            L L  N +          L SLT L L  N +   +P  +  +L  L  L L+ N++  
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 414 -PGGIPNSLANLKKLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSNNRINGNIPKGILR 471
            P G+ + L  LK+L    L+ N+L   +P   F     L  + L  N++  ++P G+  
Sbjct: 91  LPNGVFDKLTQLKEL---ALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVF- 144

Query: 472 PLPEEISRLENVVTIDLSDN 491
                  RL ++  I L DN
Sbjct: 145 ------DRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 13/139 (9%)

Query: 122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW 181
             L++  N+L+        +LT L  L L  NK+   + +     L SL  LN   N L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL- 88

Query: 182 GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYN-MTSLVHLRLASNQLGGEI 240
            S+P  +         +L  LK L L  N+L  ++P  +++ +T L  LRL  NQL   +
Sbjct: 89  QSLPNGV-------FDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-V 139

Query: 241 PYDVRDTLPNLLDFIYCFN 259
           P  V D L +L   I+  +
Sbjct: 140 PDGVFDRLTSLQY-IWLHD 157

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 43/181 (23%)

Query: 183 SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY 242
           S+P  I    P+          LDL  N L          +TSL  L L  N+L   +P 
Sbjct: 21  SVPTGI----PAQT------TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPN 69

Query: 243 DVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTY 302
            V + L +L       N+      G    LT ++ + +  N L+ +LP G+         
Sbjct: 70  GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGV--------- 119

Query: 303 NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGG 362
              F+K+                  T L  L L  NQ +  +P+ + +    L  ++L  
Sbjct: 120 ---FDKL------------------TQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHD 157

Query: 363 N 363
           N
Sbjct: 158 N 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 16/128 (12%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI---PGGIPNSLANLK 425
           +P  I      T LDL  NS+         +L  L  L L GN++   P G+ N L +L 
Sbjct: 22  VPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLT 79

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
            LN   LS N+L       F     L  + L+ N++  ++P G+         +L  +  
Sbjct: 80  YLN---LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVF-------DKLTQLKD 128

Query: 486 IDLSDNSL 493
           + L  N L
Sbjct: 129 LRLYQNQL 136

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 9e-08
 Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 31/186 (16%)

Query: 317 GLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN--ELSKLYLGGNHIYGKIPASIG 374
            ++   +      ++ +  + +  +     S+        +  L LGGN +       I 
Sbjct: 30  SVTDAVTQNELNSIDQIIANNSDIK-----SVQGIQYLPNVRYLALGGNKL-----HDIS 79

Query: 375 ---RLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEI---PGGIPNSLANLKKL 427
               L +LT L L+ N +   +P  +  +L  L+ L L  N++   P G+ + L NL  L
Sbjct: 80  ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138

Query: 428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID 487
              +L+ N+L       F    +L  +DLS N++  ++P+G+         +L  +  + 
Sbjct: 139 ---NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF-------DKLTQLKDLR 187

Query: 488 LSDNSL 493
           L  N L
Sbjct: 188 LYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 56/269 (20%), Positives = 98/269 (36%), Gaps = 78/269 (28%)

Query: 98  RSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITG 157
               L+   ++ +   +   L  +  +  + ++++  +   I  L  ++ L L  NK+  
Sbjct: 22  IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH- 76

Query: 158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP 217
                       +  L                         L NL  L LT N+L  ++P
Sbjct: 77  -----------DISALK-----------------------ELTNLTYLILTGNQLQ-SLP 101

Query: 218 STIYN-MTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQ 276
           + +++ +T+L  L L  NQL   +P  V D L NL       N+      G    LTN+ 
Sbjct: 102 NGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160

Query: 277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALD 336
            + +++N L+ +LP G+            F+K               LT    L  L L 
Sbjct: 161 ELDLSYNQLQ-SLPEGV------------FDK---------------LTQ---LKDLRLY 189

Query: 337 GNQFEGKIPESIGNFSN--ELSKLYLGGN 363
            NQ +  +P+  G F     L  ++L  N
Sbjct: 190 QNQLKS-VPD--GVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 21/149 (14%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREI-GNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDL 150
            L+ L  + L  N+L  +LP  +   L  L+ L +  N LQ  LP  +  KLT L  L+L
Sbjct: 83  ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL 140

Query: 151 MANKITG---RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL 207
             N++      V D     L +L  L+   N L  S+P  + +       +L  LK L L
Sbjct: 141 AHNQLQSLPKGVFD----KLTNLTELDLSYNQL-QSLPEGVFD-------KLTQLKDLRL 188

Query: 208 TINRLAGTVPSTIY-NMTSLVHLRLASNQ 235
             N+L  +VP  ++  +TSL ++ L  N 
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 28/166 (16%)

Query: 413 IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP 472
            P                +L    +T +   +     S+  I  +N+          ++ 
Sbjct: 13  FPDDAFAETIKA------NLKKKSVT-DAV-TQNELNSIDQIIANNSD---------IKS 55

Query: 473 LPEEISRLENVVTIDLSDNSLSGNLP--NSLKNCKSLEELLMAYNQFSGPIPNIVAELKG 530
           +   I  L NV  + L  N L  ++     L N   L  L++  NQ       +  +L  
Sbjct: 56  VQG-IQYLPNVRYLALGGNKLH-DISALKELTN---LTYLILTGNQLQSLPNGVFDKLTN 110

Query: 531 LEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIF 575
           L+ L L  N+L  S+P  +   L  L  LNL  N L+ +    G+F
Sbjct: 111 LKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPK--GVF 153

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 38/311 (12%), Positives = 92/311 (29%), Gaps = 69/311 (22%)

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGK----IPESIGNFSNE 354
           L   N+   ++         + +     +  L    L  N    +    + + + +   +
Sbjct: 103 LDEVNLASCQL---DPAGLRTLLPVFLRARKLG---LQLNSLGPEACKDLRDLLLHDQCQ 156

Query: 355 LSKLYLGGNHIYGK----IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG 410
           ++ L L  N +       +   +    S+T L L +  +  E         GL++L    
Sbjct: 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE---------GLELLAAQ- 206

Query: 411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNF----QSLLSIDLSNNRINGNIP 466
                     L   ++L +++++ N       ++         SL  + L  N ++    
Sbjct: 207 ----------LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS---S 253

Query: 467 KGILRPLPEEISRLENVVTIDLSDNSLSGN-------LPNSLKNCKSLEELLMAYNQFSG 519
           +G  + L +     E    + +S    +         L    +N  S +   +  +    
Sbjct: 254 EGR-QVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRH---- 308

Query: 520 PIPNIVAELKGLEVLDLSSNKLS----GSIPSDLQNLQALRSLNLTFNNL---EGVVPSE 572
                      L + DL  ++ +          L+    +R+L     +     G     
Sbjct: 309 ---------LELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSGSPSGSWSHP 359

Query: 573 GIFRNMSNVHL 583
              +   + H 
Sbjct: 360 QFEKGAGHHHH 370

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 41/216 (18%), Positives = 75/216 (34%), Gaps = 30/216 (13%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQL-----QGLQVLGLAGNEI-PGGIPNSLANLKKLNQ 429
           L SL  L+L+   ++      +  +       L  + LA  ++ P G+   L    +  +
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130

Query: 430 IDLSGNELTGE--IPISFG---NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV 484
           + L  N L  E    +      +   + ++ LSNN +      G+   L E ++   +V 
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLT---AAGV-AVLMEGLAGNTSVT 186

Query: 485 TIDLSDNSLSGN----LPNSLKNCKSLEELLMAYNQFSGPIPNIVAEL----KGLEVLDL 536
            + L    L       L   L   + L+EL +AYN         +A        LE+L L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 537 SSNKLS-------GSIPSDLQNLQALRSLNLTFNNL 565
             N+LS         +    +    +         +
Sbjct: 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 41/229 (17%), Positives = 86/229 (37%), Gaps = 18/229 (7%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQ-LQGLQVLGL 408
           +F++        G ++Y  I A       L  + L    ++ +    I +  +  +VL L
Sbjct: 78  HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137

Query: 409 AGNEI--PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNF----QSLLSIDLSNNRIN 462
           +  E     G+    A  + L ++DL  +++         +F     SL+S+++S   + 
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC--LA 195

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY------NQ 516
             +    L  L   ++R  N+ ++ L+       L   L+    LEEL            
Sbjct: 196 SEVSFSALERL---VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252

Query: 517 FSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL 565
               +   ++  K L  L    + +   +P+       L +LNL++  +
Sbjct: 253 VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 37/247 (14%), Positives = 84/247 (34%), Gaps = 13/247 (5%)

Query: 325 TNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGR-LRSLTLLD 383
            +    N +      +     E++ +    L ++ L    +       I +  ++  +L 
Sbjct: 77  PHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136

Query: 384 LSY-NSISGEIPIEIGQ-LQGLQVLGLAGNEIPGGIPNSLA----NLKKLNQIDLSG--N 435
           LS     S +    I    + L+ L L  +++     + L+        L  +++S   +
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196

Query: 436 ELTGEIPISFG-NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           E++            +L S+ L+       +   +L+  P+ +  L            + 
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQ-LEELGTGGYTAEVRPDVY 254

Query: 495 GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG-SIPSDLQNLQ 553
             L  +L  CK L  L   ++     +P + +    L  L+LS   +    +   L    
Sbjct: 255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP 314

Query: 554 ALRSLNL 560
            L+ L +
Sbjct: 315 KLQRLWV 321

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 81/527 (15%), Positives = 168/527 (31%), Gaps = 78/527 (14%)

Query: 76  LNLSSFGLEGTISPHIGNLS----FLRSIQLQNNKLSGNLPREIGNLF-RLRVLNISFNN 130
            NL   G  G + P I  +S    +L  I+L+   ++ +    I   F   +VL +S   
Sbjct: 82  FNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141

Query: 131 LQGELPVN--ISKLTELKMLDLMANKITGRVTDDQL----RNLRSLQVLNFG-------- 176
                 +    +    LK LDL  + +   V+   L        SL  LN          
Sbjct: 142 GFSTDGLAAIAATCRNLKELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 177 ----------KNL----LWGSIPPSIANLIPSDLSRLENLKV---LDLTINRLAGTVPST 219
                      NL    L  ++P      +     +LE L            +   +   
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260

Query: 220 IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL--LDFIYCFNRFTGKIPGSLHNLTNIQI 277
           +     L  L    + +   +P  V      L  L+  Y   + +  +   L     +Q 
Sbjct: 261 LSGCKELRCLSGFWDAVPAYLPA-VYSVCSRLTTLNLSYATVQ-SYDLVKLLCQCPKLQR 318

Query: 278 IRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD-----DEGLSFITSLTNSTHLNY 332
           + +   + +  L         LR   +  ++           ++GL  +        L  
Sbjct: 319 LWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLES 376

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK-----------IPASIGRLRSLTL 381
           +     Q       +I      +++  L                     A +   + L  
Sbjct: 377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRR 436

Query: 382 LDLSYNSISGEIPIEIGQ-LQGLQVLGLAGNEIPG-GIPNSLANLKKLNQIDLSGNELTG 439
           L LS   ++ ++   IG   + +++L +A       G+ + L+    L ++++       
Sbjct: 437 LSLSGL-LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495

Query: 440 E-IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP 498
           + +  +    +++ S+ +S+  ++    K + + +P    +L NV  ID          P
Sbjct: 496 KALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP----KL-NVEVIDERG------AP 544

Query: 499 NSLKNCKSLEELLMAYNQFSGP---IPNIVAELKGLEVLDLSSNKLS 542
           +S      +E +   Y   +GP   +P  V  +     +  S   ++
Sbjct: 545 DSRPESCPVERVF-IYRTVAGPRFDMPGFVWNMDQDSTMRFSRQIIT 590

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 36/295 (12%), Positives = 86/295 (29%), Gaps = 38/295 (12%)

Query: 295 NLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNE 354
               L+  ++  + +          F  + T+   LN ++   ++      E +      
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN-ISCLASEVSFSALERLVTRCPN 212

Query: 355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE------IPIEIGQLQGLQVLGL 408
           L  L L       K+   + R   L  L     +          + + +   + L+ L  
Sbjct: 213 LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG 272

Query: 409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISF-GNFQSLLSIDLSNNRINGNIPK 467
             + +P  +P   +   +L  ++LS   +     +        L  + + +   +     
Sbjct: 273 FWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIED----- 327

Query: 468 GILRPLPEEISRLENVVTIDLSDNSLSGNLPNS----------LKNCKSLEELLMAYNQF 517
                L    S  +++  + +  +      PN              C  LE +L    Q 
Sbjct: 328 ---AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384

Query: 518 SGP-IPNIVAELKGLEVLDLSSNKLSG-----------SIPSDLQNLQALRSLNL 560
           +   +  I      +    L   +                 + +++ + LR L+L
Sbjct: 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 52.3 bits (124), Expect = 4e-07
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 22/212 (10%)

Query: 56  SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREI 115
            +   +       +G+        S+  +  +SP +  +  L +++++      NL    
Sbjct: 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT---NNLSIGK 189

Query: 116 GNLFRLRVLNISFNNLQGELPVNI--SKLTELKMLDL--MANKITGRVTDDQL------R 165
                L+ L I    L   +  +I  S L  L+ L L             +         
Sbjct: 190 KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249

Query: 166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL----AGTVPSTIY 221
              +L+ L          +              L  L+ +D++   L    A  +   + 
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLES-----DILPQLETMDISAGVLTDEGARLLLDHVD 304

Query: 222 NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD 253
            +  L  + +  N L  E+  +++ +LP  +D
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKID 336

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 8e-07
 Identities = 29/203 (14%), Positives = 68/203 (33%), Gaps = 22/203 (10%)

Query: 375 RLRSLTLLDLSYN------SISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
               L   D+ +           ++   +  +  L  L + G            NLK L 
Sbjct: 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSL- 198

Query: 429 QIDLSGNELTGEIP--ISFGNFQSL--LSIDLSNNRINGNIPKGILRPLPEEISRLENVV 484
             ++    L   +   I   +  +L  L + +       +    + RPL  +  R  N+ 
Sbjct: 199 --EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-DRFPNLK 255

Query: 485 TIDLSDNSLSGNLPNSL---KNCKSLEELLMAYNQFSG----PIPNIVAELKGLEVLDLS 537
            + + D      +            LE + ++    +      + + V ++K L+ +++ 
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMK 315

Query: 538 SNKLSGSIPSDL-QNLQALRSLN 559
            N LS  +  +L ++L     ++
Sbjct: 316 YNYLSDEMKKELQKSLPMKIDVS 338

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.7 bits (120), Expect = 1e-06
 Identities = 25/149 (16%), Positives = 51/149 (34%), Gaps = 18/149 (12%)

Query: 352 SNELSKLYLGGNHIYGKIPASIG--RLRSLTLLDLSYNS--ISGEIPIEI-------GQL 400
              L  L +    +   +   I    L +L  L L         +  + +        + 
Sbjct: 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRF 251

Query: 401 QGLQVLGLAGNEIPGGIPNSLAN---LKKLNQIDLSGNELTGE----IPISFGNFQSLLS 453
             L+ LG+   E    +         L +L  +D+S   LT E    +       + L  
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311

Query: 454 IDLSNNRINGNIPKGILRPLPEEISRLEN 482
           I++  N ++  + K + + LP +I   ++
Sbjct: 312 INMKYNYLSDEMKKELQKSLPMKIDVSDS 340

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.3 bits (106), Expect = 6e-05
 Identities = 32/236 (13%), Positives = 69/236 (29%), Gaps = 25/236 (10%)

Query: 165 RNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMT 224
           + L SL+ +  G     G     IA+ I  +  +  + + L            S I  + 
Sbjct: 104 KKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVD 163

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL 284
               L                  +P L +                 NL +++II      
Sbjct: 164 LSPVLD----------------AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEII-SGGLP 206

Query: 285 LEGTLPPGLGNLPFLRTYNIGFNKIVSSGDD--EGLSFITSLTNSTHLNYLALDGNQFEG 342
                     +LP L    +         D        + S     +L +L +   + + 
Sbjct: 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQN 266

Query: 343 KIPESIGNFS--NELSKLYLGGNHIYGK----IPASIGRLRSLTLLDLSYNSISGE 392
            + E         +L  + +    +  +    +   + +++ L  +++ YN +S E
Sbjct: 267 VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 16/116 (13%)

Query: 689 FIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA-LVYEFLSNGSLGDWIHG----ERK 743
            ++    L  +    + ++      LD  +      +V E++  GSL +           
Sbjct: 78  TLSRTLRLSRIDKPGVARV------LDVVHTRAGGLVVAEWIRGGSLQEVADTSPSPVGA 131

Query: 744 NEL--DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD 797
                 + +A D  H      V  S   P  + +  +    +           + D
Sbjct: 132 IRAMQSLAAAADAAH---RAGVALSIDHPSRVRVSIDGDVVLAYPATMPDANPQDD 184

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 52/194 (26%), Positives = 82/194 (42%), Gaps = 45/194 (23%)

Query: 668 LIGSGSFGSVL--HNERTGSW---------KSF----IAECETLRNVRHR------NLVK 706
           +IG GSFG V+  ++ +             K F      E   L ++R +      N++ 
Sbjct: 104 VIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIH 163

Query: 707 LITSCSSLDSKN-----MEFLAL-VYEFL-SNGSLGDWIHGERKNELDITSALDYLHNDC 759
           ++    +   +N      E L++ +YE +  N   G  +   RK    I   LD LH   
Sbjct: 164 ML---ENFTFRNHICMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALH--- 217

Query: 760 EVPVVHSDLKPGNILLDEEMTA--KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
           +  ++H DLKP NILL ++  +  KV DFG + +  +RV   + I S         Y  P
Sbjct: 218 KNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV--YTYIQSRF-------YRAP 268

Query: 818 EYGLGERPSTAGDV 831
           E  LG R     D+
Sbjct: 269 EVILGARYGMPIDM 282

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 78/516 (15%), Positives = 161/516 (31%), Gaps = 63/516 (12%)

Query: 77  NLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL--QGE 134
           NL S  L+G   P     + +         ++  +     NL +L+ ++     +     
Sbjct: 74  NLRSLKLKG--KPRAAMFNLIPENWGGY--VTPWVTEISNNLRQLKSVHFRRMIVSDLDL 129

Query: 135 LPVNISKLTELKMLDLMANKITGRVTDDQL----RNLRSLQVLNFGKNLLWGSIPPSIAN 190
             +  ++  +L+ L L         T D L     + R ++ L   ++         +  
Sbjct: 130 DRLAKARADDLETLKLDKCS---GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186

Query: 191 LIPSDLSRLENLKVLDLTINRLAG----TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRD 246
           L         +L+VL+  +   A      + +   N  SLV +++   ++   +      
Sbjct: 187 L----AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV--GFFK 240

Query: 247 TLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMT--HNLLEGTLPPGLGNLPFLRTYNI 304
              NL +F          +P    NL   + +       +    +P        +R  ++
Sbjct: 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDL 300

Query: 305 GFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNH 364
            +  +     ++  + I    N   L  L    N    +  E +  +  +L +L +    
Sbjct: 301 LYALLE---TEDHCTLIQKCPN---LEVLET-RNVIGDRGLEVLAQYCKQLKRLRIERGA 353

Query: 365 IYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI----PGGIPNS 420
               +    G +    L+ L+               Q L+ + +  ++I       I   
Sbjct: 354 DEQGMEDEEGLVSQRGLIALAQG------------CQELEYMAVYVSDITNESLESIGTY 401

Query: 421 LANLKKLNQIDLSGNELTGEIPISFG------NFQSLLSIDLSNNRINGNIPKGILRPLP 474
           L NL     + L   E   ++P+  G        + L           G +    L  + 
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR--QGGLTDLGLSYIG 459

Query: 475 EEISRLENVVTIDLSDNSLSGN-LPNSLKNCKSLEELLMAYNQFSGP-IPNIVAELKGLE 532
           +    +     + L     S   L    + C +L++L M    FS   I   V +L  L 
Sbjct: 460 QYSPNVR---WMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR 516

Query: 533 VLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV 568
            L +   + S +    +Q   A    N+       V
Sbjct: 517 YLWVQGYRASMTGQDLMQ--MARPYWNIELIPSRRV 550

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 26/129 (20%)

Query: 332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSIS 390
            L L+ N+      + +      L KL L  N +   I  +       +  L L  N   
Sbjct: 33  ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGEN--- 88

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS 450
                   +++          EI   +   L  LK L   +L  N+++  +P SF +  S
Sbjct: 89  --------KIK----------EISNKMFLGLHQLKTL---NLYDNQISCVMPGSFEHLNS 127

Query: 451 LLSIDLSNN 459
           L S++L++N
Sbjct: 128 LTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 18/128 (14%)

Query: 465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSL-KNCKSLEELLMAYNQFSGPIPN 523
           IP+ I    P   + L       L+DN L     + L      L +L +  NQ +G  PN
Sbjct: 23  IPRDI----PLHTTEL------LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN 72

Query: 524 IVAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN-- 580
                  ++ L L  NK+   I + +   L  L++LNL  N +  V    G F ++++  
Sbjct: 73  AFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCV--MPGSFEHLNSLT 129

Query: 581 -VHLKGNP 587
            ++L  NP
Sbjct: 130 SLNLASNP 137

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 13/117 (11%)

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSD 195
           P +I   T    L L  N++    +D     L  L  L   +N L   I P+        
Sbjct: 24  PRDIPLHTT--ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNA------- 73

Query: 196 LSRLENLKVLDLTINRLAGTVPSTIYN-MTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
                +++ L L  N++   + + ++  +  L  L L  NQ+   +     + L +L
Sbjct: 74  FEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSL 128

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 93  NLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM 151
            L  L  ++L+ N+L+G  P        ++ L +  N ++ E+   +   L +LK L+L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLY 110

Query: 152 ANKITGRVTDDQLRNLRSLQVLNFGKN 178
            N+I+  V      +L SL  LN   N
Sbjct: 111 DNQIS-CVMPGSFEHLNSLTSLNLASN 136

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 43/195 (22%)

Query: 667 NLIGSGSFGSVL--HNERTGSW---------KSF----IAECETLRNVRHR------NLV 705
           +LIG GSFG V+  ++     W         K+F      E   L  +          +V
Sbjct: 60  SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIV 119

Query: 706 KLITSCSSLDSKN-----MEFLAL-VYEFL-SNGSLGDWIHGERKNELDITSALDYLHND 758
            L         +N      E L+  +Y+ L +    G  ++  RK    + +AL +L   
Sbjct: 120 HLK---RHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP 176

Query: 759 CEVPVVHSDLKPGNILLDEEMTA--KVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
            E+ ++H DLKP NILL     +  K+ DFG +  L +R+     I S         Y  
Sbjct: 177 -ELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRI--YQYIQSRF-------YRS 226

Query: 817 PEYGLGERPSTAGDV 831
           PE  LG     A D+
Sbjct: 227 PEVLLGMPYDLAIDM 241

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 36/215 (16%), Positives = 79/215 (36%), Gaps = 16/215 (7%)

Query: 356 SKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI-P 414
             L L G +++  +   +   + +       + +   +       + +Q + L+ + I  
Sbjct: 50  QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 107

Query: 415 GGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLP 474
             +   L+   KL  + L G  L+  I  +     +L+ ++LS         +  L+ L 
Sbjct: 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS---GFSEFALQTLL 164

Query: 475 EEISRLENVV---TIDLSDNSLSGNLPNSLKNCKSLEEL-LMAYNQF--SGPIPNIVAEL 528
              SRL+ +      D ++  +   +       +++ +L L  Y +      +  +V   
Sbjct: 165 SSCSRLDELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYRKNLQKSDLSTLVRRC 221

Query: 529 KGLEVLDLSS-NKLSGSIPSDLQNLQALRSLNLTF 562
             L  LDLS    L      +   L  L+ L+L+ 
Sbjct: 222 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 48.0 bits (114), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR 790
             +   +++L        +H DL   NILL E+   K+ DFGLAR
Sbjct: 200 FQVAKGMEFL---ASRKCIHRDLAARNILLSEKNVVKICDFGLAR 241

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/159 (18%), Positives = 57/159 (35%), Gaps = 33/159 (20%)

Query: 663 FSHENL-----IGSGSFGSVLHNERTGSWKS----------------------FIAECET 695
           F  + L     +G G+FG V+  +  G  K+                       ++E + 
Sbjct: 19  FPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKI 78

Query: 696 LRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-ITSALD 753
           L ++  H N+V L+ +C+      M    ++ EF   G+L  ++  +R   +   T    
Sbjct: 79  LIHIGHHLNVVNLLGACTKPGGPLM----VIVEFCKFGNLSTYLRSKRNEFVPYKTKGAR 134

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           +      V  +  DLK     +    ++    F   + L
Sbjct: 135 FRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSL 173

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 27/129 (20%)

Query: 332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSIS 390
            L L+ N+ +  +P  + +   +L+KL L  N I   +P  +  +L  LT+L L  N   
Sbjct: 32  RLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHEN--- 86

Query: 391 GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS 450
                   +LQ           +P G+ + L  LK+L    L  N+L       F    S
Sbjct: 87  --------KLQ----------SLPNGVFDKLTQLKEL---ALDTNQLKSVPDGIFDRLTS 125

Query: 451 LLSIDLSNN 459
           L  I L  N
Sbjct: 126 LQKIWLHTN 134

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 21/151 (13%)

Query: 724 LVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDCEVPVVHSDLKPGNI 773
           +V+E L +  L  WI       L           +   LDYLH  C +  +H+D+KP NI
Sbjct: 122 MVFEVLGH-HLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRI--IHTDIKPENI 178

Query: 774 LLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT 833
           LL       V +  + R   E  + Q S +                     P    +   
Sbjct: 179 LL------SVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEK 232

Query: 834 SESFAGEFNIVKWVESNLPENV--LQVLDPE 862
            +    +     WV  +  E++   Q    E
Sbjct: 233 LKVKIADLGNACWVHKHFTEDIQTRQYRSLE 263

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	929
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3q4u_A	301	Activin receptor type-1; structural genomics conso	100.0
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	100.0
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.98
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.98
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.98
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.98
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.98
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.98
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.98
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.98
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.98
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.98
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.98
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.98
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.98
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.98
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.98
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.97
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.97
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.97
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.97
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.97
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.97
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.97
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.97
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.97
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.97
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
3niz_A	311	Rhodanese family protein; structural genomics, str	99.97
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.97
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.97
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.97
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.97
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.97
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.97
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.97
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.97
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.97
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.97
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.97
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.97
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.97
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.97
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.97
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.97
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
3bhy_A	283	Death-associated protein kinase 3; death associate	99.97
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.97
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.97
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.97
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.97
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.97
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.97
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.97
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.97
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.97
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.97
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.97
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.97
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.97
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.97
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.97
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.97
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.97
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.97
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.97
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.96
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.96
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.96
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.96
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.96
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.96
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.96
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.96
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.96
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.96
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.96
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.96
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.96
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.96
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.96
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.96
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.96
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.96
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.96
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.96
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.96
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.96
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.96
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.96
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.96
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.96
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.96
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.96
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.96
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.96
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.96
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.96
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.96
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.96
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.96
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.96
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.96
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.95
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.95
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.95
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.95
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.95
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.95
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.95
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.95
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.95
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.95
3uqc_A	286	Probable conserved transmembrane protein; structur	99.95
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.94
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.92
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.88
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.88
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.83
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.77
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.76
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.62
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.56
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.54
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.54
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.53
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.52
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.43
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.27
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.2
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.01
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.82
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.78
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.34
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.23
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.79
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.67
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.42
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.36
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.23
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	96.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.53
3ats_A	357	Putative uncharacterized protein; hypothetical pro	96.38
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	96.29
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	96.12
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	95.8
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	95.17
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.89
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	94.79
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	93.96
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	93.86
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	93.39
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	92.37
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	91.83
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	91.49
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	89.17
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	88.79
3mes_A	424	Choline kinase; malaria, structural genomics, stru	82.6
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	80.71

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-80  Score=759.83  Aligned_cols=563  Identities=33%  Similarity=0.517  Sum_probs=430.9

Q ss_pred             CCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCcceeeCCCCCcEEEEEcCCCCCccc---cC---------
Q 002376           21 SASVGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGT---IS---------   88 (929)
Q Consensus        21 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~---i~---------   88 (929)
                      +++++.++||+|||+||+++. | |. .+++|+.+.+||+|.||+|+  ++||+.|||+++++.|.   +|         
T Consensus         5 ~~~~~~~~~~~all~~k~~~~-~-~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L   79 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLP-D-KN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL   79 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCS-C-TT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred             ccccCCHHHHHHHHHHHhhCC-C-cc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence            345557899999999999997 3 56 89999988899999999999  57999999999999987   44         


Q ss_pred             --------------CCCCCCCCCCEEEeecCCCCCCCCc--CCCCCCCCcEEeCCCCCCCCCccccc-ccccccceeccc
Q 002376           89 --------------PHIGNLSFLRSIQLQNNKLSGNLPR--EIGNLFRLRVLNISFNNLQGELPVNI-SKLTELKMLDLM  151 (929)
Q Consensus        89 --------------~~l~~L~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls  151 (929)
                                    +.|+.+++|++|||++|.++|.+|.  .++++++|++|||++|.+++.+|..+ .++++|++|||+
T Consensus        80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls  159 (768)
T 3rgz_A           80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS  159 (768)
T ss_dssp             CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred             cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence                          5777888889999999888888877  77777777777777777766665543 333333333333


Q ss_pred             ccccC-------------------------------------------------CCCChhhhccCCCCcEEEccccccCC
Q 002376          152 ANKIT-------------------------------------------------GRVTDDQLRNLRSLQVLNFGKNLLWG  182 (929)
Q Consensus       152 ~N~l~-------------------------------------------------~~i~~~~~~~l~~L~~L~Ls~N~l~~  182 (929)
                      +|+++                                                 +.+|.  ++++++|++|+|++|++++
T Consensus       160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~  237 (768)
T 3rgz_A          160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSG  237 (768)
T ss_dssp             SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCS
T ss_pred             CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCC
Confidence            33333                                                 22221  3334444444444444433


Q ss_pred             CCCccccc--------------------------------------cCCCccCCC-CcccEEEeecccCCCccCCccccC
Q 002376          183 SIPPSIAN--------------------------------------LIPSDLSRL-ENLKVLDLTINRLAGTVPSTIYNM  223 (929)
Q Consensus       183 ~~p~~i~~--------------------------------------l~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l  223 (929)
                      .+|..+..                                      .+|..+..+ ++|++|+|++|++++..|..|.++
T Consensus       238 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l  317 (768)
T 3rgz_A          238 DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC  317 (768)
T ss_dssp             CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred             cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence            33322211                                      122333222 444444444444444444445555


Q ss_pred             CCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccc-cccEEeccCccCcCCccCCCCC--CCccc
Q 002376          224 TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLT-NIQIIRMTHNLLEGTLPPGLGN--LPFLR  300 (929)
Q Consensus       224 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~--l~~L~  300 (929)
                      ++|++|+|++|+++|.+|...+..+++|++|++++|++++.+|..+.++. +|+.|++++|.+++.+|..+..  +++|+
T Consensus       318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            55555555555554445544333355555555555555555555555554 5555555555555555555444  55555


Q ss_pred             eeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCccc
Q 002376          301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT  380 (929)
Q Consensus       301 ~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  380 (929)
                      +|++++|++...       .+..+.++++|++|+|++|++++.+|..++.++ +|+.|+|++|++++.+|..++.+++|+
T Consensus       398 ~L~L~~n~l~~~-------~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          398 ELYLQNNGFTGK-------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             EEECCSSEEEEE-------CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             EEECCCCccccc-------cCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-CCCEEECCCCcccCcCCHHHcCCCCce
Confidence            555555555432       235688899999999999999999999999987 799999999999999999999999999


Q ss_pred             EEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCc
Q 002376          381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNR  460 (929)
Q Consensus       381 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  460 (929)
                      +|+|++|++++.+|..+..+++|++|+|++|++++.+|.+++.+++|++|+|++|+++|.+|..+.++++|+.|++++|+
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccc--------------------------------------------------------------CCchhhh
Q 002376          461 INGNIPKGILR--------------------------------------------------------------PLPEEIS  478 (929)
Q Consensus       461 l~g~i~~~~~~--------------------------------------------------------------~~p~~~~  478 (929)
                      ++|.+|..++.                                                              ..|..+.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            99999875432                                                              1234556


Q ss_pred             cccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeE
Q 002376          479 RLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSL  558 (929)
Q Consensus       479 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  558 (929)
                      .+++|+.|||++|+++|.+|..|+++++|+.|+|++|+++|.+|..|+.+++|++||||+|+++|.+|..+.++++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCcCcccCCCCCCCCCCCcccccCCCCCcCCC--CCCCC
Q 002376          559 NLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL--GCENP  598 (929)
Q Consensus       559 ~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~--~c~~~  598 (929)
                      ||++|+++|.+|..++|.++....+.|||++||.|  .|...
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~  751 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPS  751 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSC
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCC
Confidence            99999999999999999999999999999999987  78643

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.6e-60  Score=585.32  Aligned_cols=473  Identities=30%  Similarity=0.493  Sum_probs=380.0

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|++++|.++|.+|.  ..+++|++|+|++|++++.+|. ++++++|++|+|++|++++.+|..|.++++|++|+|+
T Consensus       179 ~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            566666666666655443  5666666666666666666655 6666666666666666666666666666666666666


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccc-----------------cCCCccCCCCcccEEEeecccCCC
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIAN-----------------LIPSDLSRLENLKVLDLTINRLAG  214 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~-----------------l~p~~~~~l~~L~~L~Ls~N~l~~  214 (929)
                      +|++++.+|..   .+++|++|+|++|+++|.+|..+..                 ..|..|+.+++|++|+|++|++++
T Consensus       256 ~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~  332 (768)
T 3rgz_A          256 SNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG  332 (768)
T ss_dssp             SSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             CCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC
Confidence            66666544432   5566666666666666555544322                 256677888999999999999988


Q ss_pred             ccCCc-cccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccc--cccccEEeccCccCcCCccC
Q 002376          215 TVPST-IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHN--LTNIQIIRMTHNLLEGTLPP  291 (929)
Q Consensus       215 ~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~  291 (929)
                      .+|.. |.++++|++|+|++|+++|.+|..+....++|+.|++++|++++.+|..+..  +++|+.|++++|.+++.+|.
T Consensus       333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~  412 (768)
T 3rgz_A          333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP  412 (768)
T ss_dssp             ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred             cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence            77765 8889999999999999988888888773348899999999988888888877  78889999999998888888


Q ss_pred             CCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCC
Q 002376          292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA  371 (929)
Q Consensus       292 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~  371 (929)
                      .|.++++|++|++++|++.....       ..+.++++|++|+|++|++++.+|..+..+. +|++|+|++|++++.+|.
T Consensus       413 ~l~~l~~L~~L~Ls~N~l~~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~  484 (768)
T 3rgz_A          413 TLSNCSELVSLHLSFNYLSGTIP-------SSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLTGEIPS  484 (768)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCC-------GGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCCSCCCG
T ss_pred             HHhcCCCCCEEECcCCcccCccc-------HHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCcccCcCCH
Confidence            88888999999999888875432       4677888888888888888888888888876 788888888888888888


Q ss_pred             CCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcc-------
Q 002376          372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS-------  444 (929)
Q Consensus       372 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-------  444 (929)
                      .++++++|++|+|++|++++.+|.+++.+++|++|+|++|++++.+|..+.++++|++|||++|+++|.+|..       
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~  564 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK  564 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccch
Confidence            8888888888888888888888888888888888888888888888888888888888888888888776654       


Q ss_pred             ---------------------------------------------------------------cccccccceecccCCcC
Q 002376          445 ---------------------------------------------------------------FGNFQSLLSIDLSNNRI  461 (929)
Q Consensus       445 ---------------------------------------------------------------~~~l~~L~~L~Ls~N~l  461 (929)
                                                                                     |.++++|+.|||++|++
T Consensus       565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l  644 (768)
T 3rgz_A          565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML  644 (768)
T ss_dssp             BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred             hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence                                                                           34467899999999999


Q ss_pred             CCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcC
Q 002376          462 NGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKL  541 (929)
Q Consensus       462 ~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  541 (929)
                      +|.+        |.+++.+++|+.|||++|+++|.+|..|+++++|+.|||++|+++|.+|..++.+++|++||||+|++
T Consensus       645 ~g~i--------p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          645 SGYI--------PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             BSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             cccC--------CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            9887        78899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCCcccccCCCCCeEeCCCCc-Ccc
Q 002376          542 SGSIPSDLQNLQALRSLNLTFNN-LEG  567 (929)
Q Consensus       542 ~~~~p~~~~~l~~L~~L~Ls~N~-l~~  567 (929)
                      +|.+|.. ..+..+....+.+|. +.|
T Consensus       717 ~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          717 SGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             EEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             cccCCCc-hhhccCCHHHhcCCchhcC
Confidence            9999974 344555666677775 554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.3e-60  Score=569.46  Aligned_cols=499  Identities=23%  Similarity=0.310  Sum_probs=295.8

Q ss_pred             CCcCChhhHHHHHHHHhhcCCCC------CCCCCCCCCCCCCCCCC---cceeeCCCCCcEEEEEcCCCCCccccCCCCC
Q 002376           22 ASVGINTDKEALMSFKSQISQES------PSSPLSYWNPSSSPCTW---PGVICNNFGNRVIGLNLSSFGLEGTISPHIG   92 (929)
Q Consensus        22 ~~~~~~~~~~aLl~~k~~~~~~~------~~~~l~~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~   92 (929)
                      +++...+|++||.+||.++..+.      +....++|+.+.+||.|   .||+|+.. +||+.|+|++++++|.+|++|+
T Consensus        24 ~~~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~  102 (636)
T 4eco_A           24 RTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG  102 (636)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred             hhhhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHh
Confidence            33444689999999999986541      22345689999999999   99999876 6999999999999999999999


Q ss_pred             CCCCCCEEEeecCCC------CC------CCCcCCCCCCCCcEEeCCCCCCCCCcccccccc-cccceecccccccCCCC
Q 002376           93 NLSFLRSIQLQNNKL------SG------NLPREIGNLFRLRVLNISFNNLQGELPVNISKL-TELKMLDLMANKITGRV  159 (929)
Q Consensus        93 ~L~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~i  159 (929)
                      +|++|++|+|++|.+      .|      .+|...  +.+|+ +++++|.+.+.+|..+..+ ..+..+++....+..  
T Consensus       103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~--  177 (636)
T 4eco_A          103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK--  177 (636)
T ss_dssp             GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC--
T ss_pred             cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc--
Confidence            999999999999976      33      445444  56777 8888888888888777633 344445544332220  


Q ss_pred             ChhhhccCCCCcEEEcc--ccccCCCCCccccccCCCccCCCCcccEEEeecccCCCc-----------------cCCcc
Q 002376          160 TDDQLRNLRSLQVLNFG--KNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT-----------------VPSTI  220 (929)
Q Consensus       160 ~~~~~~~l~~L~~L~Ls--~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~~  220 (929)
                           .....++.+.+.  .|+++| +|        ..|+++++|++|+|++|++++.                 +|..+
T Consensus       178 -----~~~~~l~~l~l~~~~n~l~~-ip--------~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          178 -----SSRITLKDTQIGQLSNNITF-VS--------KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             -----CCCCCCCTTTTTCCSCEEEE-EC--------GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             -----ccccchhhhhhccccCCCcc-CC--------HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                 011111111111  233332 22        2233444455555555554443                 44444


Q ss_pred             c--cCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCc-CCC-CCCCccccc------ccccEEeccCccCcCCcc
Q 002376          221 Y--NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR-FTG-KIPGSLHNL------TNIQIIRMTHNLLEGTLP  290 (929)
Q Consensus       221 ~--~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~~~~p  290 (929)
                      .  ++++|++|+|++|++.|.+|..+.. +++|++|++++|+ ++| .+|..++++      ++|+.|++++|+++ .+|
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip  321 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP  321 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccC
Confidence            4  5555555555555554444443333 4444444444444 444 445444443      56666666666666 555


Q ss_pred             C--CCCCCCccceecccccccc-CCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCcccc
Q 002376          291 P--GLGNLPFLRTYNIGFNKIV-SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYG  367 (929)
Q Consensus       291 ~--~~~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~  367 (929)
                      .  .|+++++|++|++++|++. .++         .+.++++|++|+|++|+++ .+|..+..+..+|++|++++|+++ 
T Consensus       322 ~~~~l~~l~~L~~L~L~~N~l~g~ip---------~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-  390 (636)
T 4eco_A          322 VETSLQKMKKLGMLECLYNQLEGKLP---------AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-  390 (636)
T ss_dssp             CHHHHTTCTTCCEEECCSCCCEEECC---------CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred             chhhhccCCCCCEEeCcCCcCccchh---------hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence            4  4544444444444444443 211         2344556666666777666 666666666522677777777666 


Q ss_pred             ccCCCCCCCC--cccEEEeeCCCCCcccCcccc-------CCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc
Q 002376          368 KIPASIGRLR--SLTLLDLSYNSISGEIPIEIG-------QLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT  438 (929)
Q Consensus       368 ~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  438 (929)
                      .+|..+..++  +|++|+|++|++++.+|..+.       .+++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus       391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~  470 (636)
T 4eco_A          391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT  470 (636)
T ss_dssp             SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred             ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence            5566665544  666777777776666666666       5566666666666666444444555666666666666666


Q ss_pred             cccCc-ccccc-------cccceecccCCcCCCCCCCCcccCCchhhh--cccCccEEEecCCCCCCCCCcchhcCcCcc
Q 002376          439 GEIPI-SFGNF-------QSLLSIDLSNNRINGNIPKGILRPLPEEIS--RLENVVTIDLSDNSLSGNLPNSLKNCKSLE  508 (929)
Q Consensus       439 ~~~p~-~~~~l-------~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~--~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~  508 (929)
                       .+|. .+...       ++|+.|+|++|+|+ .+        |..+.  .+++|+.|||++|++++ +|..+.++++|+
T Consensus       471 -~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l--------p~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~  539 (636)
T 4eco_A          471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KL--------SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLK  539 (636)
T ss_dssp             -BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BC--------CGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCC
T ss_pred             -CcCHHHhccccccccccCCccEEECcCCcCC-cc--------ChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCC
Confidence             3333 22222       26666666666665 23        44444  55666666666666665 566666666666


Q ss_pred             eeec------ccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          509 ELLM------AYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       509 ~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      .|+|      ++|++.+.+|..++.+++|++|||++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       540 ~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            6666      33455555555555555555555555555 34555443  455555555555544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=7.4e-58  Score=550.44  Aligned_cols=502  Identities=22%  Similarity=0.252  Sum_probs=439.1

Q ss_pred             CcceeeCCCC---------CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCC
Q 002376           61 WPGVICNNFG---------NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL  131 (929)
Q Consensus        61 w~gv~c~~~~---------~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  131 (929)
                      +.-+.|...+         ..++.|||++|.+++..|..|+++++|++|+|++|++++..|.+|+++++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            4456786532         3688999999999988889999999999999999999999999999999999999999999


Q ss_pred             CCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeeccc
Q 002376          132 QGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINR  211 (929)
Q Consensus       132 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~  211 (929)
                      ++..|..|+++++|++|+|++|+++ .+++..|.++++|++|+|++|++.+..        ...+..+++|++|+|++|+
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~  164 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIK--------LPKGFPTEKLKVLDFQNNA  164 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCC--------CCTTCCCTTCCEEECCSSC
T ss_pred             cccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccC--------cccccCCcccCEEEcccCc
Confidence            9999999999999999999999998 465556999999999999999986522        1233448999999999999


Q ss_pred             CCCccCCccccCCCCc--eEEeeecCCCCcCCcccccCCCCcceeeccCCcC--------------------------CC
Q 002376          212 LAGTVPSTIYNMTSLV--HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRF--------------------------TG  263 (929)
Q Consensus       212 l~~~~p~~~~~l~~L~--~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l--------------------------~~  263 (929)
                      +++..|..|..+++|+  +|++++|++++..|. .+. ..+|+.++++.|..                          ..
T Consensus       165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  242 (606)
T 3t6q_A          165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED  242 (606)
T ss_dssp             CCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred             ccccChhhhhhhcccceeEEecCCCccCccChh-Hhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence            9999899999999999  899999999965444 444 46788888877641                          01


Q ss_pred             CCCCcccccc--cccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccc
Q 002376          264 KIPGSLHNLT--NIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFE  341 (929)
Q Consensus       264 ~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  341 (929)
                      ..+..+..+.  +|+.|++++|.+++..+..|+.+++|++|++++|++..++        ..+.++++|++|++++|+++
T Consensus       243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp--------~~l~~l~~L~~L~l~~n~l~  314 (606)
T 3t6q_A          243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP--------SGLVGLSTLKKLVLSANKFE  314 (606)
T ss_dssp             CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC--------SSCCSCTTCCEEECTTCCCS
T ss_pred             cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC--------hhhcccccCCEEECccCCcC
Confidence            1122333333  7999999999999988889999999999999999998654        45788999999999999999


Q ss_pred             cccCchhhhccccccEEEecCCccccccCC-CCCCCCcccEEEeeCCCCCccc--CccccCCCCCCEEEecCCcCCCCCc
Q 002376          342 GKIPESIGNFSNELSKLYLGGNHIYGKIPA-SIGRLRSLTLLDLSYNSISGEI--PIEIGQLQGLQVLGLAGNEIPGGIP  418 (929)
Q Consensus       342 ~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p  418 (929)
                      +..|..+..++ +|++|++++|.+.+.+|. .+..+++|++|++++|.+++..  |..+..+++|++|++++|++.+..|
T Consensus       315 ~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  393 (606)
T 3t6q_A          315 NLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT  393 (606)
T ss_dssp             BGGGGCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT
T ss_pred             cCchhhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH
Confidence            88888888887 899999999999977765 4999999999999999999776  7889999999999999999999999


Q ss_pred             ccccCCCCCceecccCcccccccCcc-cccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCC--
Q 002376          419 NSLANLKKLNQIDLSGNELTGEIPIS-FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG--  495 (929)
Q Consensus       419 ~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~--  495 (929)
                      ..|..+++|++|++++|++++..|.. |.++++|+.|++++|.+++..        |..+..+++|++|+|++|++++  
T Consensus       394 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~  465 (606)
T 3t6q_A          394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS--------EQLFDGLPALQHLNLQGNHFPKGN  465 (606)
T ss_dssp             TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--------TTTTTTCTTCCEEECTTCBCGGGE
T ss_pred             HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC--------HHHHhCCCCCCEEECCCCCCCccc
Confidence            99999999999999999999876654 899999999999999998654        6677889999999999999987  


Q ss_pred             -CCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC-C
Q 002376          496 -NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-G  573 (929)
Q Consensus       496 -~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~  573 (929)
                       ..+..+..+++|++|+|++|++++.+|..|+.+++|+.|||++|++++..|..+.+++.| +|++++|++++.+|.. .
T Consensus       466 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~  544 (606)
T 3t6q_A          466 IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP  544 (606)
T ss_dssp             ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred             cccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence             334679999999999999999999999999999999999999999999999999999999 9999999999887764 4


Q ss_pred             CCCCCCcccccCCCCCcC
Q 002376          574 IFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       574 ~~~~l~~l~l~~N~~~c~  591 (929)
                      .+++++.+++++||+.|.
T Consensus       545 ~l~~L~~L~l~~N~~~c~  562 (606)
T 3t6q_A          545 ILSQQRTINLRQNPLDCT  562 (606)
T ss_dssp             HHHTSSEEECTTCCEECS
T ss_pred             cCCCCCEEeCCCCCcccc
Confidence            578899999999999983

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.1e-57  Score=551.42  Aligned_cols=504  Identities=25%  Similarity=0.274  Sum_probs=380.1

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      .+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|++++..+..|+++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            47899999999999877778999999999999999999999999999999999999999999766678999999999999


Q ss_pred             cccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccc--cCCCCce
Q 002376          151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY--NMTSLVH  228 (929)
Q Consensus       151 s~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~  228 (929)
                      ++|+++ .+++..|+++++|++|+|++|.+++..|        ..|.++++|++|+|++|++++..+..+.  .+++|++
T Consensus       105 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~  175 (680)
T 1ziw_A          105 MSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKL--------GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK  175 (680)
T ss_dssp             CSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCC--------CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESE
T ss_pred             CCCccC-ccChhHccccCCCCEEECCCCcccccCc--------hhhcccccCCEEEccCCcccccCHHHhhccccccccE
Confidence            999998 5676669999999999999998866544        4456677788888888877776666543  4577777


Q ss_pred             EEeeecCCCCcCCccccc--------------------------CCCCcceeeccCCcCCCCCCCccccccc--ccEEec
Q 002376          229 LRLASNQLGGEIPYDVRD--------------------------TLPNLLDFIYCFNRFTGKIPGSLHNLTN--IQIIRM  280 (929)
Q Consensus       229 L~Ls~N~l~~~ip~~~~~--------------------------~l~~L~~l~l~~N~l~~~~p~~~~~l~~--L~~L~L  280 (929)
                      |+|++|++++..|..+..                          ..++|+.|++++|++++..|..|.+++.  |+.|++
T Consensus       176 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~L  255 (680)
T 1ziw_A          176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL  255 (680)
T ss_dssp             EECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEEC
T ss_pred             EECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEEC
Confidence            777777777554433221                          0144556666666666666666666544  666666


Q ss_pred             cCccCcCCccCCCCCCCccceeccccccccCCCCCC--C---C-----------------ccc----cccCCCCCCCEEE
Q 002376          281 THNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDE--G---L-----------------SFI----TSLTNSTHLNYLA  334 (929)
Q Consensus       281 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~--~---~-----------------~~~----~~~~~l~~L~~L~  334 (929)
                      ++|.+++..|..|+.+++|++|++++|++.......  +   +                 ..+    ..+..+++|++|+
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            666666666666666666666666666654432210  0   0                 000    1456677888888


Q ss_pred             ccCCccccccCchhhhcc---------------------------ccccEEEecCCccccccCCCCCCCCcccEEEeeCC
Q 002376          335 LDGNQFEGKIPESIGNFS---------------------------NELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYN  387 (929)
Q Consensus       335 Ls~N~l~~~~p~~~~~~~---------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  387 (929)
                      +++|++++..|..+..+.                           .+|+.|++++|++++..|..|..+++|++|+|++|
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence            888888776666555443                           13445555556666666777777777888888888


Q ss_pred             CCCcccC-ccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc--cccCcccccccccceecccCCcCCCC
Q 002376          388 SISGEIP-IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT--GEIPISFGNFQSLLSIDLSNNRINGN  464 (929)
Q Consensus       388 ~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~  464 (929)
                      .+++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++  +.+|..|.++++|+.|+|++|+|++.
T Consensus       416 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i  495 (680)
T 1ziw_A          416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI  495 (680)
T ss_dssp             CCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCC
T ss_pred             cCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcC
Confidence            7776555 56777777888888888777777777777788888888888776  46777888888888888888888743


Q ss_pred             CCCCcccCCchhhhcccCccEEEecCCCCCCCC--------CcchhcCcCcceeecccccccccCCccccCCCCCCEEEC
Q 002376          465 IPKGILRPLPEEISRLENVVTIDLSDNSLSGNL--------PNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDL  536 (929)
Q Consensus       465 i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  536 (929)
                      .        |..+..+++|++|||++|++++..        +..|.++++|++|+|++|+|+...+..|..+++|+.|||
T Consensus       496 ~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L  567 (680)
T 1ziw_A          496 N--------DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL  567 (680)
T ss_dssp             C--------TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             C--------hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeEC
Confidence            2        455777888999999999887542        234788899999999999999666677999999999999


Q ss_pred             CCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC-C-CCCCCCcccccCCCCCcC
Q 002376          537 SSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-G-IFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       537 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~-~~~~l~~l~l~~N~~~c~  591 (929)
                      ++|++++..+..|.++++|+.|+|++|++++.+|.. . .+++++.+++.+||+.|.
T Consensus       568 s~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~  624 (680)
T 1ziw_A          568 GLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT  624 (680)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred             CCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence            999999877777889999999999999999877653 2 478899999999999994

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.7e-56  Score=555.18  Aligned_cols=494  Identities=21%  Similarity=0.229  Sum_probs=414.7

Q ss_pred             CCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCC-CcCCCCCCCCcEEeCCCCCCCCCccc
Q 002376           59 CTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNL-PREIGNLFRLRVLNISFNNLQGELPV  137 (929)
Q Consensus        59 c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~  137 (929)
                      |.|..|-+  ...+++.|||++|.+++..|.+|.++++|++|||++|.+.+.+ |.+|+++++|++|+|++|.|++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            56888776  3458999999999999999999999999999999999777666 78899999999999999999999999


Q ss_pred             ccccccccceecccccccCCCCCh-hhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCcc
Q 002376          138 NISKLTELKMLDLMANKITGRVTD-DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV  216 (929)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~  216 (929)
                      .|.++++|++|+|++|++++.++. ..|+++++|++|+|++|.+++..|       +..|+++++|++|+|++|++++..
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~-------~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL-------HPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC-------CGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccccc-------chhHhhCCCCCEEECCCCcCCeeC
Confidence            999999999999999999975554 458999999999999999865432       245788999999999999999999


Q ss_pred             CCccccC--CCCceEEeeecCCCCcCCcccccCCC------CcceeeccCCcCCCCCCCccccc----------------
Q 002376          217 PSTIYNM--TSLVHLRLASNQLGGEIPYDVRDTLP------NLLDFIYCFNRFTGKIPGSLHNL----------------  272 (929)
Q Consensus       217 p~~~~~l--~~L~~L~Ls~N~l~~~ip~~~~~~l~------~L~~l~l~~N~l~~~~p~~~~~l----------------  272 (929)
                      +..|..+  ++|+.|+|++|.+.+.+|..+.. ++      .|+.|++++|++++.++..+...                
T Consensus       165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             HHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            9999988  89999999999999888876544 33      38999999999888777655432                


Q ss_pred             ----------------------ccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCC
Q 002376          273 ----------------------TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL  330 (929)
Q Consensus       273 ----------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L  330 (929)
                                            ++|+.|++++|.+.+..|..|..+++|+.|++++|+|.....       ..|.++++|
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-------~~~~~l~~L  316 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD-------EAFYGLDNL  316 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT-------TTTTTCSSC
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh-------HHhcCCCCC
Confidence                                  578888888888888888888888888888888888876543       356778888


Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      ++|+|++|++++..|..+..++ +|+.|+|++|++.+..+..|..+++|++|+|++|.+++.     ..+++|+.|++++
T Consensus       317 ~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~  390 (844)
T 3j0a_A          317 QVLNLSYNLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSG  390 (844)
T ss_dssp             CEEEEESCCCSCCCSCSCSSCT-TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEES
T ss_pred             CEEECCCCCCCccCHHHhcCCC-CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCC
Confidence            8888888888877777777776 688888888888877777888888888888888888742     2377888888888


Q ss_pred             CcCCCCCcccccCCCCCceecccCcccccccC-cccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEec
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS  489 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs  489 (929)
                      |+++ .+|..   ..+++.|++++|++++... ..+.++++|+.|+|++|++++..+.       ..+..+++|+.|+|+
T Consensus       391 N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~~~~L~~L~Ls  459 (844)
T 3j0a_A          391 NKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD-------QTPSENPSLEQLFLG  459 (844)
T ss_dssp             CCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS-------SSSCSCTTCCBCEEE
T ss_pred             CCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc-------cccccCCccccccCC
Confidence            8887 34443   4578889999999886422 2356889999999999999864322       123446789999999


Q ss_pred             CCCCC-----CCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCc
Q 002376          490 DNSLS-----GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       490 ~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      +|.++     +..|..|.++++|+.|+|++|+|++.+|..|..+++|+.|+|++|+|++..|..+.  ++|+.|||++|+
T Consensus       460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCc
Confidence            99997     55567899999999999999999999999999999999999999999987777776  899999999999


Q ss_pred             CcccCCCCCCCCCCCcccccCCCCCc
Q 002376          565 LEGVVPSEGIFRNMSNVHLKGNPKLC  590 (929)
Q Consensus       565 l~~~~p~~~~~~~l~~l~l~~N~~~c  590 (929)
                      +++.+|..  |.+++.+++.+||+.|
T Consensus       538 l~~~~~~~--~~~L~~l~l~~Np~~C  561 (844)
T 3j0a_A          538 LLAPNPDV--FVSLSVLDITHNKFIC  561 (844)
T ss_dssp             CCCCCSCC--CSSCCEEEEEEECCCC
T ss_pred             CCCCChhH--hCCcCEEEecCCCccc
Confidence            99998864  7789999999999999

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=4.6e-57  Score=552.10  Aligned_cols=510  Identities=23%  Similarity=0.308  Sum_probs=311.0

Q ss_pred             CCCcCChhhHHHHHHHHhhcCCCCCCCCCCCCCCCC-----CC--CCC------------cceeeCCCCCcEEEEEcCCC
Q 002376           21 SASVGINTDKEALMSFKSQISQESPSSPLSYWNPSS-----SP--CTW------------PGVICNNFGNRVIGLNLSSF   81 (929)
Q Consensus        21 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~   81 (929)
                      +++++..+|++||++||+++.+  |     +|+.+.     +|  |.|            .||+|+. .+||+.|+|+++
T Consensus       262 ~~~~~~~~d~~ALl~~k~~l~~--~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~  333 (876)
T 4ecn_A          262 KETAEYIKDYKALKAIWEALDG--K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGF  333 (876)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTG--G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTT
T ss_pred             cccccchHHHHHHHHHHHHcCC--C-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccC
Confidence            3445567899999999999853  3     897654     56  999            9999997 579999999999


Q ss_pred             CCccccCCCCCCCCCCCEEEe-ecCCCCCCCCcCCCCC----CC-----CcE------Ee-CCCCCCCC-----------
Q 002376           82 GLEGTISPHIGNLSFLRSIQL-QNNKLSGNLPREIGNL----FR-----LRV------LN-ISFNNLQG-----------  133 (929)
Q Consensus        82 ~l~g~i~~~l~~L~~L~~L~L-s~N~l~~~~p~~~~~l----~~-----L~~------L~-Ls~N~l~~-----------  133 (929)
                      ++.|.+|++|++|++|++||| ++|.++|..|..-...    ..     ++.      ++ .....+.+           
T Consensus       334 ~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~  413 (876)
T 4ecn_A          334 GAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE  413 (876)
T ss_dssp             CCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTT
T ss_pred             CCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcc
Confidence            999999999999999999999 9999988855432211    00     000      00 00011111           


Q ss_pred             Ccccccccccccceecccc--cccCCCCChhhhccCCCCcEEEccccccCC-CCCccccc--------cCCCccC--CCC
Q 002376          134 ELPVNISKLTELKMLDLMA--NKITGRVTDDQLRNLRSLQVLNFGKNLLWG-SIPPSIAN--------LIPSDLS--RLE  200 (929)
Q Consensus       134 ~~p~~~~~l~~L~~L~Ls~--N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~i~~--------l~p~~~~--~l~  200 (929)
                      ..+........++.+.+..  |+++| ||.. |+++++|++|+|++|+++| .+|..+..        .+|..++  +++
T Consensus       414 ~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~  491 (876)
T 4ecn_A          414 MKPIKKDSRISLKDTQIGNLTNRITF-ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK  491 (876)
T ss_dssp             SCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred             ccccccccccchhhceeccccCcccc-hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCC
Confidence            1111122334455555554  88886 7776 8888888888888888877 23322211        1455555  788


Q ss_pred             cccEEEeecccCCCccCCccccCCCCceEEeeecC-CCC-cCCccccc------CCCCcceeeccCCcCCCCCCC--ccc
Q 002376          201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ-LGG-EIPYDVRD------TLPNLLDFIYCFNRFTGKIPG--SLH  270 (929)
Q Consensus       201 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~ip~~~~~------~l~~L~~l~l~~N~l~~~~p~--~~~  270 (929)
                      +|++|+|++|++.+.+|..|.++++|++|+|++|+ ++| .+|..+..      .+++|+.|++++|+++ .+|.  .+.
T Consensus       492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~  570 (876)
T 4ecn_A          492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ  570 (876)
T ss_dssp             TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred             CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhh
Confidence            88888888888888888888888888888888887 776 67765443      2335666666666665 5555  566


Q ss_pred             ccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhh
Q 002376          271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGN  350 (929)
Q Consensus       271 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  350 (929)
                      ++++|+.|+|++|.++ .+| .|+.+++|+.|++++|+                               ++ .+|..++.
T Consensus       571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~-------------------------------l~-~lp~~l~~  616 (876)
T 4ecn_A          571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQ-------------------------------IE-EIPEDFCA  616 (876)
T ss_dssp             TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSC-------------------------------CS-CCCTTSCE
T ss_pred             cCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCc-------------------------------cc-cchHHHhh
Confidence            6666666666666665 444 55555555555555554                               44 44444444


Q ss_pred             ccccccEEEecCCccccccCCCCCCCCc--ccEEEeeCCCCCcccCccc---c--CCCCCCEEEecCCcCCCCCcccccC
Q 002376          351 FSNELSKLYLGGNHIYGKIPASIGRLRS--LTLLDLSYNSISGEIPIEI---G--QLQGLQVLGLAGNEIPGGIPNSLAN  423 (929)
Q Consensus       351 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~p~~~~~  423 (929)
                      +..+|+.|+|++|+|+ .+|..+..++.  |+.|+|++|++++.+|...   .  .+++|+.|+|++|+++...+..+..
T Consensus       617 l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~  695 (876)
T 4ecn_A          617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT  695 (876)
T ss_dssp             ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred             ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence            4411555555555554 44444444432  5555555555554433211   1  2235555555555555332233335


Q ss_pred             CCCCceecccCcccccccCcccc--------cccccceecccCCcCCCCCCCCcccCCchhhh--cccCccEEEecCCCC
Q 002376          424 LKKLNQIDLSGNELTGEIPISFG--------NFQSLLSIDLSNNRINGNIPKGILRPLPEEIS--RLENVVTIDLSDNSL  493 (929)
Q Consensus       424 l~~L~~L~Ls~N~l~~~~p~~~~--------~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~--~l~~L~~LdLs~N~l  493 (929)
                      +++|+.|+|++|+++ .+|..+.        ++++|+.|+|++|+|+ .+        |..+.  .+++|+.|+|++|++
T Consensus       696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~l--------p~~l~~~~l~~L~~L~Ls~N~L  765 (876)
T 4ecn_A          696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SL--------SDDFRATTLPYLSNMDVSYNCF  765 (876)
T ss_dssp             TCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CC--------CGGGSTTTCTTCCEEECCSSCC
T ss_pred             CCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cc--------hHHhhhccCCCcCEEEeCCCCC
Confidence            555555555555555 3333221        1225666666666655 23        44443  555666666666666


Q ss_pred             CCCCCcchhcCcCcceeeccc------ccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          494 SGNLPNSLKNCKSLEELLMAY------NQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       494 ~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      ++ +|..+.++++|+.|+|++      |++.+.+|..|..+++|+.|+|++|++ +.+|..+.  ++|+.|||++|++..
T Consensus       766 ~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          766 SS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             SS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             Cc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            65 555666666666666654      677777777777777777777777777 56776655  577778888777766


Q ss_pred             cCCCCC-CCCCCCcccccCCCCCc
Q 002376          568 VVPSEG-IFRNMSNVHLKGNPKLC  590 (929)
Q Consensus       568 ~~p~~~-~~~~l~~l~l~~N~~~c  590 (929)
                      ..+..- .........+.+|+..+
T Consensus       842 i~~~~~~~~~~~~~~~L~~n~~~~  865 (876)
T 4ecn_A          842 IDVTSVCPYIEAGMYVLLYDKTQD  865 (876)
T ss_dssp             EECGGGHHHHHTTCCEEECCTTSE
T ss_pred             cChHHccccccchheeecCCCccc
Confidence            544321 11123344555665443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.8e-57  Score=541.53  Aligned_cols=485  Identities=21%  Similarity=0.215  Sum_probs=430.5

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            47899999999999888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCChhhhccCCCCcEEEccccccCC-CCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCc--
Q 002376          151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWG-SIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV--  227 (929)
Q Consensus       151 s~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~--  227 (929)
                      ++|+++ .+++..|+++++|++|+|++|++.+ .+        |..|+++++|++|+|++|++++..|..|..+++|+  
T Consensus       112 ~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~l--------p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~  182 (606)
T 3vq2_A          112 VETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKL--------PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV  182 (606)
T ss_dssp             TTSCCC-CSSSSCCTTCTTCCEEECCSSCCCCCCC--------CGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTC
T ss_pred             cCCccc-cccccccCCCCCCCEEeCCCCcccceec--------hHhHhhcCCCCEEEccCCcceecChhhhhhhhccccc
Confidence            999998 4665569999999999999999864 33        45677899999999999999999999998888776  


Q ss_pred             --eEEeeecCCCCcCCcccccCCCCcceeeccCCcCC-CCCCCcccccccccEEec------------------------
Q 002376          228 --HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFT-GKIPGSLHNLTNIQIIRM------------------------  280 (929)
Q Consensus       228 --~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~-~~~p~~~~~l~~L~~L~L------------------------  280 (929)
                        +|++++|+++ .+|...+... +|+.|++++|.++ +.+|..+.++++|+.+++                        
T Consensus       183 l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~  260 (606)
T 3vq2_A          183 NLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD  260 (606)
T ss_dssp             CCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGG
T ss_pred             cceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhh
Confidence              8999999998 6777776644 8999999999987 455666777777666665                        


Q ss_pred             ---------cCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhc
Q 002376          281 ---------THNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF  351 (929)
Q Consensus       281 ---------s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  351 (929)
                               ..|.+++.+|. +..+++|+.|++++|.+...+         .+..+++|++|++++|++ +.+|. + .+
T Consensus       261 l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---------~l~~~~~L~~L~l~~n~l-~~lp~-~-~l  327 (606)
T 3vq2_A          261 VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---------DVPKHFKWQSLSIIRCQL-KQFPT-L-DL  327 (606)
T ss_dssp             SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---------CCCTTCCCSEEEEESCCC-SSCCC-C-CC
T ss_pred             ccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh---------hccccccCCEEEcccccC-ccccc-C-CC
Confidence                     67788888887 999999999999999987653         567789999999999999 68884 4 66


Q ss_pred             cccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcc--cCccccCCCCCCEEEecCCcCCCCCcccccCCCCCce
Q 002376          352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE--IPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ  429 (929)
Q Consensus       352 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  429 (929)
                      + +|++|++++|+..+.+  .+..+++|++|++++|++++.  .|..+..+++|++|++++|.+++ +|..+..+++|++
T Consensus       328 ~-~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~  403 (606)
T 3vq2_A          328 P-FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH  403 (606)
T ss_dssp             S-SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred             C-ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence            5 8999999999766544  678999999999999999876  48889999999999999999985 6688999999999


Q ss_pred             ecccCcccccccC-cccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCC-CCCcchhcCcCc
Q 002376          430 IDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG-NLPNSLKNCKSL  507 (929)
Q Consensus       430 L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L  507 (929)
                      |++++|++++..| ..|.++++|+.|++++|++++.+        |..+..+++|++|++++|++++ .+|..|+.+++|
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  475 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--------DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL  475 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccc--------hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence            9999999998887 68999999999999999998655        6678889999999999999998 479999999999


Q ss_pred             ceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCC-CCCcccccCC
Q 002376          508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFR-NMSNVHLKGN  586 (929)
Q Consensus       508 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-~l~~l~l~~N  586 (929)
                      ++|+|++|++++.+|..|..+++|++|+|++|++++.+|..+.++++|++|++++|+++..++....++ +++.+++++|
T Consensus       476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N  555 (606)
T 3vq2_A          476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN  555 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSC
T ss_pred             CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCC
Confidence            999999999999999999999999999999999999999999999999999999999996554434454 6999999999


Q ss_pred             CCCcC
Q 002376          587 PKLCL  591 (929)
Q Consensus       587 ~~~c~  591 (929)
                      |+.|.
T Consensus       556 ~~~c~  560 (606)
T 3vq2_A          556 SVACI  560 (606)
T ss_dssp             CCCCS
T ss_pred             CcccC
Confidence            99994

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.2e-53  Score=520.91  Aligned_cols=494  Identities=22%  Similarity=0.283  Sum_probs=366.9

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccccccc
Q 002376           76 LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKI  155 (929)
Q Consensus        76 l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  155 (929)
                      +|+++++++ .+|..+.  ++|++|+|++|++++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|++
T Consensus         9 ~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            9 ADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             EECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             eECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            556666676 6887775  7999999999999988888999999999999999999999999999999999999999999


Q ss_pred             CCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       156 ~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      + .+|+..|.++++|++|+|++|++++        +.|..|+++++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus        86 ~-~l~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           86 S-QLSDKTFAFCTNLTELHLMSNSIQK--------IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             C-CCCTTTTTTCTTCSEEECCSSCCCC--------CCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             C-ccChhhhccCCCCCEEECCCCccCc--------cChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            8 6888779999999999999998854        344567889999999999999999999999999999999999999


Q ss_pred             CCCcCCcccc-cCCCCcceeeccCCcCCCCCCCccccc---------------------------ccccEEeccCccCcC
Q 002376          236 LGGEIPYDVR-DTLPNLLDFIYCFNRFTGKIPGSLHNL---------------------------TNIQIIRMTHNLLEG  287 (929)
Q Consensus       236 l~~~ip~~~~-~~l~~L~~l~l~~N~l~~~~p~~~~~l---------------------------~~L~~L~Ls~N~l~~  287 (929)
                      +++..+..+. ..+++|+.|++++|++++..|..+..+                           ++|+.|++++|.+++
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence            9865554432 236899999999999999998877655                           457888889999999


Q ss_pred             CccCCCCCCCc--cceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcc-------------
Q 002376          288 TLPPGLGNLPF--LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFS-------------  352 (929)
Q Consensus       288 ~~p~~~~~l~~--L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-------------  352 (929)
                      ..|..|.+++.  |+.|++++|++.....       ..+..+++|++|+|++|++++..|..+..+.             
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~  309 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGN-------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK  309 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECT-------TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCc-------ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence            99999999876  9999999999987653       4577888999999999988877776655543             


Q ss_pred             -------------------ccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcc--cCccccCC--CCCCEEEec
Q 002376          353 -------------------NELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE--IPIEIGQL--QGLQVLGLA  409 (929)
Q Consensus       353 -------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l--~~L~~L~L~  409 (929)
                                         .+|++|++++|++++..+..|.++++|++|+|++|.++..  .+..|..+  ++|++|+++
T Consensus       310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~  389 (680)
T 1ziw_A          310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLT  389 (680)
T ss_dssp             C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECT
T ss_pred             cccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECC
Confidence                               1344555555555555555555555555555444432211  01111111  234444445


Q ss_pred             CCcCCCCCcccccCCCCCceecccCcccccccC-cccccccccceecccCCcCCCCCCCCc------------------c
Q 002376          410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGI------------------L  470 (929)
Q Consensus       410 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~------------------~  470 (929)
                      +|++++..|..|..+++|++|+|++|++++.+| ..|.++++|++|++++|++++..+..+                  .
T Consensus       390 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~  469 (680)
T 1ziw_A          390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV  469 (680)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCT
T ss_pred             CCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccccccc
Confidence            555555566667777777777777777766554 566677777777777777654322111                  1


Q ss_pred             cCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCC--------ccccCCCCCCEEECCCCcCC
Q 002376          471 RPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP--------NIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       471 ~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~  542 (929)
                      ...|..+..+++|+.|||++|++++..|..|.++++|++|+|++|++++..+        ..|+.+++|++|+|++|+++
T Consensus       470 ~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  549 (680)
T 1ziw_A          470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD  549 (680)
T ss_dssp             TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred             ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence            2346667777778888888888777777777777788888888887775422        23677777888888888877


Q ss_pred             CcCCcccccCCCCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCC
Q 002376          543 GSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPK  588 (929)
Q Consensus       543 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~  588 (929)
                      ...+..|.++++|+.|+|++|++++.++.. ..+++++.+++++|..
T Consensus       550 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            544456777788888888888887655543 3456777777777753

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.5e-54  Score=516.11  Aligned_cols=487  Identities=21%  Similarity=0.222  Sum_probs=426.9

Q ss_pred             CCCcceeeCCCC--CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcc
Q 002376           59 CTWPGVICNNFG--NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELP  136 (929)
Q Consensus        59 c~w~gv~c~~~~--~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  136 (929)
                      +.-.++......  .+++.|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..|
T Consensus        43 n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~  122 (606)
T 3t6q_A           43 NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF  122 (606)
T ss_dssp             CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGG
T ss_pred             CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCc
Confidence            344455332222  378899999999999889999999999999999999999999999999999999999999998888


Q ss_pred             cccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCccc--EEEeecccCCC
Q 002376          137 VNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLK--VLDLTINRLAG  214 (929)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~--~L~Ls~N~l~~  214 (929)
                      ..|+++++|++|+|++|++++ ++...+..+++|++|+|++|.+++        +.|..|+.+++|+  .|++++|++++
T Consensus       123 ~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~--------~~~~~~~~l~~L~~l~L~l~~n~l~~  193 (606)
T 3t6q_A          123 IPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHY--------LSKEDMSSLQQATNLSLNLNGNDIAG  193 (606)
T ss_dssp             SCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCE--------ECHHHHHTTTTCCSEEEECTTCCCCE
T ss_pred             chhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccc--------cChhhhhhhcccceeEEecCCCccCc
Confidence            999999999999999999985 432335669999999999998754        3445677888998  89999999998


Q ss_pred             ccCCccccCCCCceEEeeecCCC-------------------------CcCCcccccCCC--CcceeeccCCcCCCCCCC
Q 002376          215 TVPSTIYNMTSLVHLRLASNQLG-------------------------GEIPYDVRDTLP--NLLDFIYCFNRFTGKIPG  267 (929)
Q Consensus       215 ~~p~~~~~l~~L~~L~Ls~N~l~-------------------------~~ip~~~~~~l~--~L~~l~l~~N~l~~~~p~  267 (929)
                      ..|..|.. .+|++|++++|...                         ..++...+..+.  +|+.+++++|++++..+.
T Consensus       194 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~  272 (606)
T 3t6q_A          194 IEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN  272 (606)
T ss_dssp             ECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred             cChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence            88877655 68999999887510                         122333333333  789999999999999999


Q ss_pred             cccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCch
Q 002376          268 SLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPES  347 (929)
Q Consensus       268 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~  347 (929)
                      .|.++++|+.|++++|.++ .+|..+.++++|++|++++|++.....       ..+.++++|++|++++|.+.+.+|..
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~~~~~~~~~  344 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQ-------ISASNFPSLTHLSIKGNTKRLELGTG  344 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGG-------GCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCch-------hhhhccCcCCEEECCCCCcccccchh
Confidence            9999999999999999999 788899999999999999999976532       46788999999999999999888765


Q ss_pred             -hhhccccccEEEecCCcccccc--CCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcc-cccC
Q 002376          348 -IGNFSNELSKLYLGGNHIYGKI--PASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPN-SLAN  423 (929)
Q Consensus       348 -~~~~~~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~  423 (929)
                       +..+. +|++|++++|.+++..  +..++.+++|++|++++|++++..|..|..+++|++|++++|++++..|. .+.+
T Consensus       345 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          345 CLENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             TTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             hhhccC-cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence             66666 8999999999999877  88999999999999999999999999999999999999999999987665 4899


Q ss_pred             CCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhc
Q 002376          424 LKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN  503 (929)
Q Consensus       424 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~  503 (929)
                      +++|++|++++|.+++..|..|.++++|++|++++|++++...     ..+..+..+++|++|+|++|++++..|..|++
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  498 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI-----QKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS  498 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEE-----CSSCGGGGCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccc-----ccchhhccCCCccEEECCCCccCccChhhhcc
Confidence            9999999999999999999999999999999999999976321     11467889999999999999999999999999


Q ss_pred             CcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       504 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      +++|++|+|++|++++.+|..+..++.| .|||++|++++.+|..+..+++|+.|++++|++++..+
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999999999 99999999999999999999999999999999998655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.6e-53  Score=506.81  Aligned_cols=465  Identities=22%  Similarity=0.187  Sum_probs=407.1

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|+|++|.+++..|..|.++++|++|+|++|.+++..|.+|+++++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus        57 ~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  136 (606)
T 3vq2_A           57 ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVA  136 (606)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECC
T ss_pred             cCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCC
Confidence            78999999999998888899999999999999999999999999999999999999999998888999999999999999


Q ss_pred             ccccCC-CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCccc----EEEeecccCCCccCCccccCCCC
Q 002376          152 ANKITG-RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLK----VLDLTINRLAGTVPSTIYNMTSL  226 (929)
Q Consensus       152 ~N~l~~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L  226 (929)
                      +|++++ .+|.. |+++++|++|+|++|++++..|        ..|+.+++|+    .|++++|+++++.+..+... +|
T Consensus       137 ~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L  206 (606)
T 3vq2_A          137 HNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITV--------NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KL  206 (606)
T ss_dssp             SSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEECT--------TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             CCcccceechHh-HhhcCCCCEEEccCCcceecCh--------hhhhhhhccccccceeeccCCCcceeCcccccCc-ee
Confidence            999985 45655 9999999999999999866444        3445555554    89999999997777666655 89


Q ss_pred             ceEEeeecCCCCcCCcccccCCCCcceeec---------------------------------cCCcCCCCCCCcccccc
Q 002376          227 VHLRLASNQLGGEIPYDVRDTLPNLLDFIY---------------------------------CFNRFTGKIPGSLHNLT  273 (929)
Q Consensus       227 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l---------------------------------~~N~l~~~~p~~~~~l~  273 (929)
                      ++|+|++|.+++.........++.++.+.+                                 ..|.+++.+|. +..++
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~  285 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLA  285 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGT
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCC
Confidence            999999998874333333334555554444                                 67788888887 99999


Q ss_pred             cccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccc
Q 002376          274 NIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN  353 (929)
Q Consensus       274 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  353 (929)
                      +|+.|++++|.+.. +| .+..+++|+.|++++|.+..++         .+ .+++|++|++++|+..+.+  .++.++ 
T Consensus       286 ~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~~lp---------~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-  350 (606)
T 3vq2_A          286 NVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLKQFP---------TL-DLPFLKSLTLTMNKGSISF--KKVALP-  350 (606)
T ss_dssp             TCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCSSCC---------CC-CCSSCCEEEEESCSSCEEC--CCCCCT-
T ss_pred             CCCEEEecCccchh-hh-hccccccCCEEEcccccCcccc---------cC-CCCccceeeccCCcCccch--hhccCC-
Confidence            99999999999974 56 8999999999999999996543         34 7899999999999766555  455666 


Q ss_pred             cccEEEecCCccccc--cCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCc-ccccCCCCCcee
Q 002376          354 ELSKLYLGGNHIYGK--IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP-NSLANLKKLNQI  430 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L  430 (929)
                      +|++|++++|++++.  .|..+..+++|++|+|++|.+++ +|..+..+++|++|++++|++.+..| ..+.++++|++|
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  429 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL  429 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence            899999999999977  48889999999999999999985 67899999999999999999998888 789999999999


Q ss_pred             cccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCccee
Q 002376          431 DLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEEL  510 (929)
Q Consensus       431 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L  510 (929)
                      ++++|++++..|..|.++++|++|++++|++++.+       +|..+..+++|++|||++|++++..|..|.++++|++|
T Consensus       430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-------LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-------ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-------hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence            99999999999999999999999999999998742       16677889999999999999999999999999999999


Q ss_pred             ecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCC-CCCeEeCCCCcCcccCCC
Q 002376          511 LMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ-ALRSLNLTFNNLEGVVPS  571 (929)
Q Consensus       511 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~  571 (929)
                      +|++|++++.+|..|..+++|++|||++|+++ .+|..+..++ +|++|++++|++.+..+.
T Consensus       503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             ECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999999999999999999999999999 5777799997 599999999999987664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.5e-51  Score=510.49  Aligned_cols=497  Identities=20%  Similarity=0.181  Sum_probs=375.0

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCc-ccccccccccceeccccc
Q 002376           75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL-PVNISKLTELKMLDLMAN  153 (929)
Q Consensus        75 ~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N  153 (929)
                      ..|.++++++ .+|.   -.++|++|||++|.+++..|..|.++++|++|||++|.+.+.+ |..|.++++|++|+|++|
T Consensus         8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            4566778887 5666   4589999999999999999999999999999999999777666 789999999999999999


Q ss_pred             ccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccC-CccccCCCCceEEee
Q 002376          154 KITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP-STIYNMTSLVHLRLA  232 (929)
Q Consensus       154 ~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls  232 (929)
                      +|++ ++++.|.++++|++|+|++|.+++.+|..      ..|+.+++|++|+|++|++++..+ ..|.++++|++|+|+
T Consensus        84 ~l~~-~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~------~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls  156 (844)
T 3j0a_A           84 KIYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKD------GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS  156 (844)
T ss_dssp             CCCE-ECTTSSCSCSSCCCEECTTCCCSSCCSTT------CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred             cCcc-cCHhHccCCcccCEeeCcCCCCCcccccC------ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence            9985 55556999999999999999997765532      247889999999999999998766 579999999999999


Q ss_pred             ecCCCCcCCcccccCC--CCcceeeccCCcCCCCCCCccccccc------ccEEeccCccCcCCccCCCCCC---Cccce
Q 002376          233 SNQLGGEIPYDVRDTL--PNLLDFIYCFNRFTGKIPGSLHNLTN------IQIIRMTHNLLEGTLPPGLGNL---PFLRT  301 (929)
Q Consensus       233 ~N~l~~~ip~~~~~~l--~~L~~l~l~~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~~~~p~~~~~l---~~L~~  301 (929)
                      +|++++..|..+.. +  ++|+.|+++.|.+++..|..+..+.+      |+.|++++|.+++..+..+...   +.++.
T Consensus       157 ~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          157 SNQIFLVCEHELEP-LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             SSCCCCCCSGGGHH-HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSE
T ss_pred             CCcCCeeCHHHccc-ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccc
Confidence            99999877776654 5  89999999999999999988877766      9999999999998877766543   44555


Q ss_pred             eccccccccCCCCCCCC--ccccccCCC--CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC
Q 002376          302 YNIGFNKIVSSGDDEGL--SFITSLTNS--THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR  377 (929)
Q Consensus       302 L~L~~N~i~~~~~~~~~--~~~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  377 (929)
                      +.++.+.+........+  .....|.++  ++|+.|+|++|.+.+..|..+..+. +|+.|+|++|++++..|..|.+++
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~  314 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLD  314 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCC-CCCEEEEESCCCCEECTTTTTTCS
T ss_pred             eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCC-CCCEEECCCCcCCCCChHHhcCCC
Confidence            55553322111000000  000122222  5666667766666666566665555 566677777766666666666666


Q ss_pred             cccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceeccc
Q 002376          378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLS  457 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  457 (929)
                      +|++|+|++|++++..|..|..+++|++|++++|++++..+..|.++++|++|+|++|.+++. +    .+++|+.|+++
T Consensus       315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~  389 (844)
T 3j0a_A          315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLS  389 (844)
T ss_dssp             SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEE
T ss_pred             CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccC
Confidence            677777777666666666666666677777776666666666666666666666666666532 1    14455555555


Q ss_pred             CCcCCCCCCCCc------------cc--CCchhhhcccCccEEEecCCCCCCCCCc-chhcCcCcceeeccccccc----
Q 002376          458 NNRINGNIPKGI------------LR--PLPEEISRLENVVTIDLSDNSLSGNLPN-SLKNCKSLEELLMAYNQFS----  518 (929)
Q Consensus       458 ~N~l~g~i~~~~------------~~--~~p~~~~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~----  518 (929)
                      +|+++ .+|...            +.  ..+..+..+++|+.|||++|++++..+. .+..+++|+.|+|++|.++    
T Consensus       390 ~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~  468 (844)
T 3j0a_A          390 GNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE  468 (844)
T ss_dssp             SCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred             CCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence            55554 222211            00  1134466889999999999999976554 4567899999999999997    


Q ss_pred             -ccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcC
Q 002376          519 -GPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       519 -~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~  591 (929)
                       +..|..|..+++|++|||++|+|++.+|..|.++++|+.|+|++|+|++.+|.... ++++.+++++|.....
T Consensus       469 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~  541 (844)
T 3j0a_A          469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAP  541 (844)
T ss_dssp             SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCC
T ss_pred             cccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCC
Confidence             45567799999999999999999999999999999999999999999987765533 7899999999986653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3.3e-52  Score=495.18  Aligned_cols=483  Identities=19%  Similarity=0.213  Sum_probs=300.2

Q ss_pred             CCCCcceeeCCCC-----------CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeC
Q 002376           58 PCTWPGVICNNFG-----------NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNI  126 (929)
Q Consensus        58 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  126 (929)
                      .|.|.|+ |+..+           .+++.|+|++|.+++..|..|.++++|++|+|++|++++..|.+|+++++|++|||
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            5899998 86432           25667777777777666667777777777777777777666677777777777777


Q ss_pred             CCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEE
Q 002376          127 SFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD  206 (929)
Q Consensus       127 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~  206 (929)
                      ++|++++..|..|+++++|++|+|++|++++.-.+..++++++|++|++++|.+.+.+       .+..|.++++|++|+
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-------~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI-------RRIDFAGLTSLNELE  154 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-------CTTTTTTCCEEEEEE
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc-------CHhhhhcccccCeee
Confidence            7777776666667777777777777777764211223667777777777777643322       234566677777777


Q ss_pred             eecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCC--C-CcccccccccEEeccCc
Q 002376          207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKI--P-GSLHNLTNIQIIRMTHN  283 (929)
Q Consensus       207 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~--p-~~~~~l~~L~~L~Ls~N  283 (929)
                      |++|++++..|..|.++++|++|+++.|.+. .+|..+...+++|++|++++|++++..  | .....+++|+.|++++|
T Consensus       155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             ccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence            7777777777777777777777777777665 455555555677777777777776642  1 12234566777777777


Q ss_pred             cCcCCcc----CCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccc-----cCchhhhcccc
Q 002376          284 LLEGTLP----PGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGK-----IPESIGNFSNE  354 (929)
Q Consensus       284 ~l~~~~p----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~  354 (929)
                      .+++..+    ..+..++.|+.+++++|.+......... ....+..+.+|+.|+++++.+...     ++.. .....+
T Consensus       234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~-~~~~~~  311 (549)
T 2z81_A          234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS-ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTV-YSLLEK  311 (549)
T ss_dssp             EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCC-TTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHH-HHHSTT
T ss_pred             ccchhHHHHHHHHhhhhcccccccccccccccccccccc-chhhhhhhcccccccccccccchhhhcccchhh-hhhccc
Confidence            6665332    3345566677777777766554322111 112344556667777766655421     1111 122235


Q ss_pred             ccEEEecCCccccccCCCC-CCCCcccEEEeeCCCCCcccC---ccccCCCCCCEEEecCCcCCCCCc--ccccCCCCCc
Q 002376          355 LSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIP---IEIGQLQGLQVLGLAGNEIPGGIP--NSLANLKKLN  428 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~  428 (929)
                      |+.|++++|++. .+|..+ ..+++|++|+|++|++++.+|   ..++.+++|++|+|++|++++..+  ..+..+++|+
T Consensus       312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~  390 (549)
T 2z81_A          312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLT  390 (549)
T ss_dssp             CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCC
T ss_pred             ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCC
Confidence            777777777765 344443 456777777777777766553   235666777777777777765432  4466667777


Q ss_pred             eecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcc
Q 002376          429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLE  508 (929)
Q Consensus       429 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~  508 (929)
                      +||+++|+++ .+|..+..+++|++|++++|++++ +|.        .+  .++|++|||++|++++.+    .++++|+
T Consensus       391 ~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~--------~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKT--------CI--PQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             EEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCT--------TS--CTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             EEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccc--------hh--cCCceEEECCCCChhhhc----ccCChhc
Confidence            7777777776 456666666777777777777652 221        11  135667777777766542    3566677


Q ss_pred             eeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          509 ELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       509 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      +|+|++|+|+ .+|. ...+++|++|||++|++++.+|..+..+++|+.|++++|++++..|
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            7777777776 4444 3456667777777777776666666666777777777766665544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-51  Score=488.08  Aligned_cols=487  Identities=21%  Similarity=0.232  Sum_probs=312.3

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|||++|.+++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  108 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence            56777777777776666677777777777777777777667777777777777777777776666777777777777777


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCC----c
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSL----V  227 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----~  227 (929)
                      +|+++ .++...|+++++|++|+|++|.+.+.       -+|..|+++++|++|++++|++++..|..|..+++|    +
T Consensus       109 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~-------~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~  180 (570)
T 2z63_A          109 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  180 (570)
T ss_dssp             TSCCC-CSTTCSCTTCTTCCEEECCSSCCCCC-------CCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred             ccccc-cCCCccccccccccEEecCCCcccee-------cChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence            77776 45554477777777777777776431       023445667777777777777777777777777777    6


Q ss_pred             eEEeeecCCCCcCCcccccCCCCcceeeccCCcCCC-CCCCcccccccccEEeccCccCc------CCccCCCCCCCc--
Q 002376          228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTG-KIPGSLHNLTNIQIIRMTHNLLE------GTLPPGLGNLPF--  298 (929)
Q Consensus       228 ~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~------~~~p~~~~~l~~--  298 (929)
                      +|++++|.+++. +...+... +|+.+++++|.... .++..+.++++++.+++..+.+.      ......|..+++  
T Consensus       181 ~L~l~~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          181 SLDLSLNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             EEECTTCCCCEE-CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             hcccCCCCceec-CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence            777777777743 33333323 67777777664321 23333444444444433322111      111122333322  


Q ss_pred             cceeccccc-cccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC
Q 002376          299 LRTYNIGFN-KIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR  377 (929)
Q Consensus       299 L~~L~L~~N-~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  377 (929)
                      ++.++++.| .+....       +..+..+++|++|++++|.++ .+|..+...  +|++|++++|.+. .+|.  ..++
T Consensus       259 l~~l~l~~~~~~~~~~-------~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~  325 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDI-------IDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLK  325 (570)
T ss_dssp             EEEEEEEETTEEESCS-------TTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCS
T ss_pred             hhhhhhhcchhhhhhc-------hhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--cccc
Confidence            233334333 222211       134555667777777777776 466666555  5777777777766 3343  3566


Q ss_pred             cccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCC--cccccCCCCCceecccCcccccccCcccccccccceec
Q 002376          378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGI--PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID  455 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  455 (929)
                      +|+.|++++|.+.+..+.  ..+++|++|++++|++++..  |..+.++++|++|++++|.+++..+. |..+++|+.|+
T Consensus       326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~  402 (570)
T 2z63_A          326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLD  402 (570)
T ss_dssp             SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEE
T ss_pred             ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEE
Confidence            777777777776655544  56677777777777776543  56666777777777777777654443 66777777777


Q ss_pred             ccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccccc-ccCCccccCCCCCCEE
Q 002376          456 LSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS-GPIPNIVAELKGLEVL  534 (929)
Q Consensus       456 Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L  534 (929)
                      +++|++++..+       +..+..+++|++|++++|.+++..|..|.++++|++|++++|+++ +.+|..+..+++|++|
T Consensus       403 l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          403 FQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             CTTSEEESCTT-------SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             ccCCccccccc-------hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            77777665432       134556667777777777777777777777777777777777776 4667777777777777


Q ss_pred             ECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCCCcC
Q 002376          535 DLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       535 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~~c~  591 (929)
                      +|++|++++..|..+.++++|++|++++|++++.+|.. ..+++++.+++++|++.|.
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence            77777777666777777777777777777777765543 3456667777777777663

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-50  Score=480.08  Aligned_cols=467  Identities=21%  Similarity=0.216  Sum_probs=399.2

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|+|++|.+++..+..|+++++|++|+|++|++++..|.+|+++++|++|+|++|++++..+..|+++++|++|+|+
T Consensus        53 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~  132 (570)
T 2z63_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  132 (570)
T ss_dssp             SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECC
T ss_pred             CceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecC
Confidence            68899999999998778889999999999999999998888999999999999999999998777789999999999999


Q ss_pred             ccccCC-CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcc----cEEEeecccCCCccCCccccCCCC
Q 002376          152 ANKITG-RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL----KVLDLTINRLAGTVPSTIYNMTSL  226 (929)
Q Consensus       152 ~N~l~~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L----~~L~Ls~N~l~~~~p~~~~~l~~L  226 (929)
                      +|.+++ .+|.. |+++++|++|++++|++++.        .|..|+.+++|    +.|++++|++++..|..|..+ +|
T Consensus       133 ~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L  202 (570)
T 2z63_A          133 HNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI--------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RL  202 (570)
T ss_dssp             SSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEE--------CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EE
T ss_pred             CCccceecChhh-hcccCCCCEEeCcCCcccee--------cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cc
Confidence            999985 35655 99999999999999988543        34556667777    899999999999999888776 89


Q ss_pred             ceEEeeecCCCCcCCcccccCCCCcceeeccCCcC------CCCCCCcccccc--cccEEeccCc-cCcCCccCCCCCCC
Q 002376          227 VHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRF------TGKIPGSLHNLT--NIQIIRMTHN-LLEGTLPPGLGNLP  297 (929)
Q Consensus       227 ~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l------~~~~p~~~~~l~--~L~~L~Ls~N-~l~~~~p~~~~~l~  297 (929)
                      ++|+|++|......-......+++++...+..+.+      .......+..+.  .++.+++++| .+.+..|..|..++
T Consensus       203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~  282 (570)
T 2z63_A          203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT  282 (570)
T ss_dssp             EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred             eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence            99999999655322223333466666555543322      222223344443  3677888888 88888999999999


Q ss_pred             ccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC
Q 002376          298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR  377 (929)
Q Consensus       298 ~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  377 (929)
                      +|+.|++++|.+..++        ..+..+ +|++|++++|.+. .+|.  ..++ +|+.|++++|.+.+..+.  ..++
T Consensus       283 ~L~~L~l~~~~l~~l~--------~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~-~L~~L~l~~n~~~~~~~~--~~~~  347 (570)
T 2z63_A          283 NVSSFSLVSVTIERVK--------DFSYNF-GWQHLELVNCKFG-QFPT--LKLK-SLKRLTFTSNKGGNAFSE--VDLP  347 (570)
T ss_dssp             TCSEEEEESCEECSCC--------BCCSCC-CCSEEEEESCBCS-SCCB--CBCS-SCCEEEEESCBSCCBCCC--CBCT
T ss_pred             cccEEEecCccchhhh--------hhhccC-CccEEeeccCccc-ccCc--cccc-ccCEEeCcCCcccccccc--ccCC
Confidence            9999999999998654        345667 9999999999998 6776  3444 799999999999877665  7899


Q ss_pred             cccEEEeeCCCCCccc--CccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccC-ccccccccccee
Q 002376          378 SLTLLDLSYNSISGEI--PIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIP-ISFGNFQSLLSI  454 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L  454 (929)
                      +|++|++++|++++..  |..+..+++|++|++++|.+++..+. +..+++|++|++++|++++..| ..|.++++|++|
T Consensus       348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            9999999999998664  77889999999999999999875554 9999999999999999998766 578999999999


Q ss_pred             cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCC-CCCCcchhcCcCcceeecccccccccCCccccCCCCCCE
Q 002376          455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS-GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV  533 (929)
Q Consensus       455 ~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  533 (929)
                      ++++|++++.+        |..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|++++.+|..|..+++|++
T Consensus       427 ~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  498 (570)
T 2z63_A          427 DISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV  498 (570)
T ss_dssp             ECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             eCcCCcccccc--------hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence            99999998654        667888999999999999998 678999999999999999999999999999999999999


Q ss_pred             EECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC
Q 002376          534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE  572 (929)
Q Consensus       534 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  572 (929)
                      |+|++|++++..|..+.++++|+.|++++|+++|.+|..
T Consensus       499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            999999999988889999999999999999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8e-50  Score=474.59  Aligned_cols=488  Identities=17%  Similarity=0.205  Sum_probs=401.4

Q ss_pred             eeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccc
Q 002376           65 ICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTE  144 (929)
Q Consensus        65 ~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  144 (929)
                      .|.+.+  |  .|+++++++ .+|+.+.  ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++
T Consensus         3 ~C~~~~--~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDASG--V--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECTTS--E--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCc--e--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            577643  3  799999998 7888775  89999999999999999999999999999999999999988899999999


Q ss_pred             cceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCcc-CCccccC
Q 002376          145 LKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV-PSTIYNM  223 (929)
Q Consensus       145 L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l  223 (929)
                      |++|||++|+++ .+++..|+++++|++|+|++|++++.       -.|..|+++++|++|+|++|++.+.+ +..|.++
T Consensus        76 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           76 LEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTL-------GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             CCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSS-------CSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             CCEEECCCCccC-ccCHHHhccCCCCcEEECCCCccccc-------chhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence            999999999998 56777799999999999999998642       12456788999999999999954444 4789999


Q ss_pred             CCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCc--c-CCCCCCCccc
Q 002376          224 TSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTL--P-PGLGNLPFLR  300 (929)
Q Consensus       224 ~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~  300 (929)
                      ++|++|+|++|++++.+|..+.. +++|+.|+++.|.+....+..+..+++|+.|++++|++++..  | .....+++|+
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             cccCeeeccCCcccccChhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            99999999999999888877765 899999999999986543334467899999999999999752  2 3345688999


Q ss_pred             eeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccC------chhhhccccccEEEecCCcccccc-----
Q 002376          301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP------ESIGNFSNELSKLYLGGNHIYGKI-----  369 (929)
Q Consensus       301 ~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p------~~~~~~~~~L~~L~Ls~N~l~~~~-----  369 (929)
                      .|++++|.+......   .....+..+++|+.|++++|.+.+...      ..+..+. +|+.|+++++.+....     
T Consensus       227 ~L~l~~n~l~~~~~~---~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~l  302 (549)
T 2z81_A          227 KLAFRGSVLTDESFN---ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG-KVETVTIRRLHIPQFYLFYDL  302 (549)
T ss_dssp             EEEEESCEEEHHHHH---HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT-TCCEEEEESCBCSCGGGSCCC
T ss_pred             ceeccccccchhHHH---HHHHHhhhhccccccccccccccccccccccchhhhhhhc-ccccccccccccchhhhcccc
Confidence            999999988642110   112345677899999999999876321      1223344 7999999999876421     


Q ss_pred             CCCCCCCCcccEEEeeCCCCCcccCccc-cCCCCCCEEEecCCcCCCCCcc---cccCCCCCceecccCcccccccC--c
Q 002376          370 PASIGRLRSLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEIPGGIPN---SLANLKKLNQIDLSGNELTGEIP--I  443 (929)
Q Consensus       370 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~  443 (929)
                      +..+....+|+.|++++|+++ .+|..+ ..+++|++|++++|++++.+|.   .+..+++|++|+|++|++++..+  .
T Consensus       303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  381 (549)
T 2z81_A          303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE  381 (549)
T ss_dssp             CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred             hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence            111233568999999999998 677766 5799999999999999987653   47889999999999999986543  5


Q ss_pred             ccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCc
Q 002376          444 SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPN  523 (929)
Q Consensus       444 ~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  523 (929)
                      .+..+++|++|++++|+++ .+        |..+..+++|++|+|++|++++ +|..+  .++|++|+|++|+|++.+  
T Consensus       382 ~~~~l~~L~~L~Ls~N~l~-~l--------p~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~--  447 (549)
T 2z81_A          382 ILLTLKNLTSLDISRNTFH-PM--------PDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS--  447 (549)
T ss_dssp             HGGGCTTCCEEECTTCCCC-CC--------CSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC--
T ss_pred             hhhcCCCCCEEECCCCCCc-cC--------ChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc--
Confidence            6889999999999999997 34        6667788999999999999984 44433  268999999999999754  


Q ss_pred             cccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC-CCCCCCCcccccCCCCCcC
Q 002376          524 IVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       524 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~l~~N~~~c~  591 (929)
                        ..+++|++|||++|+|+ .+|. ...+++|++|+|++|++++.+|.. ..+++++.+++++||+.|.
T Consensus       448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence              57899999999999999 6776 567999999999999999988864 5688999999999999883

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.4e-49  Score=469.16  Aligned_cols=454  Identities=21%  Similarity=0.259  Sum_probs=340.5

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccc
Q 002376           75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANK  154 (929)
Q Consensus        75 ~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (929)
                      .+|+++++++ .+|..+.  ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|+
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            4677777777 5776665  777777777777776666777777777777777777777777777777777777777777


Q ss_pred             cCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCC--ceEEee
Q 002376          155 ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSL--VHLRLA  232 (929)
Q Consensus       155 l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls  232 (929)
                      |+ .+|..   .+++|++|+|++|++++.       -.|..|+++++|++|+|++|++++   ..|..+++|  ++|+|+
T Consensus        81 l~-~lp~~---~l~~L~~L~L~~N~l~~~-------~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~  146 (520)
T 2z7x_B           81 LV-KISCH---PTVNLKHLDLSFNAFDAL-------PICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV  146 (520)
T ss_dssp             CC-EEECC---CCCCCSEEECCSSCCSSC-------CCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred             ee-ecCcc---ccCCccEEeccCCccccc-------cchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence            76 45554   677777777777776541       023445566777777777777765   345556666  777777


Q ss_pred             ecCC--CCcCCcccccCCCCcceeeccCCcCCCCCCCcccccc-cccEEeccCccCcCCccC-CCCCCCccceecccccc
Q 002376          233 SNQL--GGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLT-NIQIIRMTHNLLEGTLPP-GLGNLPFLRTYNIGFNK  308 (929)
Q Consensus       233 ~N~l--~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~  308 (929)
                      +|++  .+.+|                         ..+..+. +...+++++|.+.+.++. .+.++++|+.+++++|.
T Consensus       147 ~n~l~~~~~~~-------------------------~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~  201 (520)
T 2z7x_B          147 LGETYGEKEDP-------------------------EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL  201 (520)
T ss_dssp             ECTTTTSSCCT-------------------------TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred             ccccccccccc-------------------------ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence            7766  44444                         3333332 233445566665554443 45666666666666664


Q ss_pred             -------ccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhc--cccccEEEecCCccccccCCCC-----C
Q 002376          309 -------IVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF--SNELSKLYLGGNHIYGKIPASI-----G  374 (929)
Q Consensus       309 -------i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~--~~~L~~L~Ls~N~l~~~~p~~~-----~  374 (929)
                             +..        .+..+..+++|+.|++++|.+++..+..+...  ..+|++|++++|+++|.+|..+     +
T Consensus       202 ~~~~~~~~~~--------~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~  273 (520)
T 2z7x_B          202 EDNKCSYFLS--------ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT  273 (520)
T ss_dssp             STTTTHHHHH--------HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSC
T ss_pred             cccccceeec--------chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccc
Confidence                   211        11356677888888888888876544333221  1279999999999999999988     9


Q ss_pred             CCCcccEEEeeCCCCCcccC-ccccCC---CCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccc
Q 002376          375 RLRSLTLLDLSYNSISGEIP-IEIGQL---QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQS  450 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  450 (929)
                      ++++|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..|.++++
T Consensus       274 ~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  349 (520)
T 2z7x_B          274 SLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTE  349 (520)
T ss_dssp             CCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred             cCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCC
Confidence            999999999999999  455 555555   67999999999987532  1368899999999999999989999999999


Q ss_pred             cceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCc-chhcCcCcceeecccccccccCCccccCCC
Q 002376          451 LLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPN-SLKNCKSLEELLMAYNQFSGPIPNIVAELK  529 (929)
Q Consensus       451 L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  529 (929)
                      |+.|+|++|++++.      ..+|..+..+++|++|||++|++++.+|. .+..+++|++|++++|++++.+|..+.  +
T Consensus       350 L~~L~L~~N~l~~l------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~  421 (520)
T 2z7x_B          350 LETLILQMNQLKEL------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--P  421 (520)
T ss_dssp             CCEEECCSSCCCBH------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--T
T ss_pred             CCEEEccCCccCcc------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--c
Confidence            99999999999851      12367789999999999999999986665 488899999999999999988887765  7


Q ss_pred             CCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCC-CCCCCCCCcccccCCCCCcC
Q 002376          530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPS-EGIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       530 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~l~l~~N~~~c~  591 (929)
                      +|++|||++|+++ .+|..+..+++|++|++++|++++..+. ...+++++.+++++||+.|.
T Consensus       422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            9999999999999 7888888999999999999999965444 34578899999999999883

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.5e-47  Score=461.23  Aligned_cols=486  Identities=19%  Similarity=0.197  Sum_probs=345.6

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      .++.|||++|.+++..+.+|.+|++|++|||++|+|++..|.+|.+|++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            46677777777775555567777777777777777776666667777777777777777776666667777777777777


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCc----
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV----  227 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----  227 (929)
                      +|+|+ .+++..|+++++|++|+|++|++++..       .|..++.+++|++|+|++|+|++..+..|..+.+++    
T Consensus       133 ~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~  204 (635)
T 4g8a_A          133 ETNLA-SLENFPIGHLKTLKELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL  204 (635)
T ss_dssp             TSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred             CCcCC-CCChhhhhcCcccCeeccccCccccCC-------CchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence            77776 455555777777777777777664311       233455667777777777777766666666554433    


Q ss_pred             eEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCC-CCCcccccccccEEec--------------------------
Q 002376          228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGK-IPGSLHNLTNIQIIRM--------------------------  280 (929)
Q Consensus       228 ~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~-~p~~~~~l~~L~~L~L--------------------------  280 (929)
                      .++++.|.++ .++...+. ...+..+++..|..... .+..+..+..++...+                          
T Consensus       205 ~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          205 SLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             EEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence            4666666665 34433333 22344455554433321 1122233333333333                          


Q ss_pred             ----cCccCcC---CccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccc
Q 002376          281 ----THNLLEG---TLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSN  353 (929)
Q Consensus       281 ----s~N~l~~---~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  353 (929)
                          ..+....   ..+..+..+.+++.+++..|.+...         ..+.....|+.|++++|.+.+..+..   +. 
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------~~~~~~~~L~~L~l~~~~~~~~~~~~---l~-  349 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---------KDFSYNFGWQHLELVNCKFGQFPTLK---LK-  349 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---------GGGGSCCCCSEEEEESCEESSCCCCB---CT-
T ss_pred             hhhhhhhhhcccccchhhhhhhhcccccccccccccccc---------cccccchhhhhhhcccccccCcCccc---ch-
Confidence                2222111   1122334444555555555555432         23455677888888888887544432   22 


Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCc--ccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceec
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISG--EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID  431 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  431 (929)
                      .|+.++++.|.+...  ..+..+++|+.|++++|.+..  ..+..+..+.+|++++++.|.+.. .+..+..+++|+.++
T Consensus       350 ~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~  426 (635)
T 4g8a_A          350 SLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLD  426 (635)
T ss_dssp             TCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEE
T ss_pred             hhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchh
Confidence            688888888887643  345678999999999999863  456667788999999999998874 556788899999999


Q ss_pred             ccCcccccccC-cccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCC-CCCCCcchhcCcCcce
Q 002376          432 LSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL-SGNLPNSLKNCKSLEE  509 (929)
Q Consensus       432 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l-~~~~p~~~~~l~~L~~  509 (929)
                      ++.|+.....+ ..|.++.+++.++++.|.+++..        |..+..++.++.|+|++|++ .+.+|..|..+++|++
T Consensus       427 l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~--------~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~  498 (635)
T 4g8a_A          427 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  498 (635)
T ss_dssp             CTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             hhhcccccccccccccccccccccccccccccccc--------ccccccchhhhhhhhhhcccccccCchhhhhccccCE
Confidence            99988876554 46888999999999999998654        56677888999999999985 4567889999999999


Q ss_pred             eecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCC-CC-CCCCcccccCCC
Q 002376          510 LLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEG-IF-RNMSNVHLKGNP  587 (929)
Q Consensus       510 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~-~~l~~l~l~~N~  587 (929)
                      |+|++|+|++.+|..|.++++|++|+|++|+|++..|..|.++++|++|||++|+|++.+|..- .+ .+++.+++++||
T Consensus       499 L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          499 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             EECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988752 23 689999999999


Q ss_pred             CCcC
Q 002376          588 KLCL  591 (929)
Q Consensus       588 ~~c~  591 (929)
                      +.|.
T Consensus       579 ~~C~  582 (635)
T 4g8a_A          579 FACT  582 (635)
T ss_dssp             BCCS
T ss_pred             Cccc
Confidence            9993

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5e-48  Score=472.39  Aligned_cols=462  Identities=20%  Similarity=0.278  Sum_probs=325.8

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeC-CCCCCCCCcccccccc----ccc--ceeccc----------ccccCC
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNI-SFNNLQGELPVNISKL----TEL--KMLDLM----------ANKITG  157 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l----~~L--~~L~Ls----------~N~l~~  157 (929)
                      .+++.|+|++|.+.|.+|++|++|++|++||| ++|.++|..|-.-...    ..+  +.+...          ...+.+
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            46789999999999999999999999999999 8998887754321111    000  000000          000000


Q ss_pred             CCChh----------hhccCCCCcEEEccc--cccCCCCCccccccCCCccCCCCcccEEEeecccCCCc-cCCccccCC
Q 002376          158 RVTDD----------QLRNLRSLQVLNFGK--NLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT-VPSTIYNMT  224 (929)
Q Consensus       158 ~i~~~----------~~~~l~~L~~L~Ls~--N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~  224 (929)
                      .++..          .......++.+.++.  |+++| +        |..|+++++|++|+|++|+|++. +|..+..  
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-I--------P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~--  471 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-I--------SKAIQRLTKLQIIYFANSPFTYDNIAVDWED--  471 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-E--------CGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-h--------hHHHhcCCCCCEEECcCCcCCCCcccccccc--
Confidence            00000          001111222222222  33332 2        22334455555555555555541 0000000  


Q ss_pred             CCceEEeeecCCCCcCCcccc-cCCCCcceeeccCCcCCCCCCCcccccccccEEeccCcc-CcC-CccCCCCCC-----
Q 002376          225 SLVHLRLASNQLGGEIPYDVR-DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL-LEG-TLPPGLGNL-----  296 (929)
Q Consensus       225 ~L~~L~Ls~N~l~~~ip~~~~-~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l-----  296 (929)
                            ++.|.++|.+|..+. ..+++|+.|++++|++.+.+|..|.++++|+.|+|++|+ ++| .+|..++++     
T Consensus       472 ------~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          472 ------ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             ------TTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             ------cccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence                  000111112555542 235556666666666666666666666666666666665 665 555443333     


Q ss_pred             --CccceeccccccccCCCCCCCCcccc--ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCC
Q 002376          297 --PFLRTYNIGFNKIVSSGDDEGLSFIT--SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPAS  372 (929)
Q Consensus       297 --~~L~~L~L~~N~i~~~~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~  372 (929)
                        ++|+.|++++|++..++        .  .+.++++|++|+|++|+++ .+| .++.+. +|+.|+|++|+++ .+|..
T Consensus       546 ~l~~L~~L~Ls~N~L~~ip--------~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~  613 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEFP--------ASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPED  613 (876)
T ss_dssp             TTTTCCEEECCSSCCCBCC--------CHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTT
T ss_pred             ccCCccEEEeeCCcCCccC--------ChhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHH
Confidence              37777777777765432        3  5778889999999999998 888 777776 7999999999999 88999


Q ss_pred             CCCCCc-ccEEEeeCCCCCcccCccccCCCC--CCEEEecCCcCCCCCcccc---c--CCCCCceecccCcccccccCcc
Q 002376          373 IGRLRS-LTLLDLSYNSISGEIPIEIGQLQG--LQVLGLAGNEIPGGIPNSL---A--NLKKLNQIDLSGNELTGEIPIS  444 (929)
Q Consensus       373 ~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~~~~p~~  444 (929)
                      +.++++ |++|+|++|+++ .+|..+..++.  |+.|+|++|++.+.+|...   .  .+++|+.|+|++|+++. +|..
T Consensus       614 l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~-lp~~  691 (876)
T 4ecn_A          614 FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK-FPTE  691 (876)
T ss_dssp             SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS-CCHH
T ss_pred             HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc-cCHH
Confidence            999999 999999999999 78888887755  9999999999998776433   2  34589999999999994 5554


Q ss_pred             -cccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchh--cCcCcceeecccccccccC
Q 002376          445 -FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLK--NCKSLEELLMAYNQFSGPI  521 (929)
Q Consensus       445 -~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~  521 (929)
                       +..+++|+.|+|++|+|+ .+|...+...+....++++|+.|+|++|+++ .+|..+.  .+++|+.|+|++|+|++ +
T Consensus       692 ~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-l  768 (876)
T 4ecn_A          692 LFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-F  768 (876)
T ss_dssp             HHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred             HHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-c
Confidence             558999999999999998 7777665544434556679999999999999 7888887  99999999999999998 7


Q ss_pred             CccccCCCCCCEEECCC------CcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCC
Q 002376          522 PNIVAELKGLEVLDLSS------NKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQ  592 (929)
Q Consensus       522 p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~  592 (929)
                      |..+..+++|+.|+|++      |++.+.+|..+.++++|+.|+|++|++ +.+|.. .+++++.+++++|+.....
T Consensus       769 p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~i~  843 (876)
T 4ecn_A          769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNISID  843 (876)
T ss_dssp             CCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCEEE
T ss_pred             chhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCccC
Confidence            88999999999999977      889999999999999999999999999 777776 4579999999999976543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.2e-48  Score=457.56  Aligned_cols=439  Identities=18%  Similarity=0.215  Sum_probs=290.5

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|+|+ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            57899999999999888889999999999999999999998999999999999999999999 57766  8999999999


Q ss_pred             cccccCC-CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcc--cEEEeecccC--CCccCCccccCC-
Q 002376          151 MANKITG-RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL--KVLDLTINRL--AGTVPSTIYNMT-  224 (929)
Q Consensus       151 s~N~l~~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~-  224 (929)
                      ++|++++ .+|.. |+++++|++|+|++|++.+           ..|..+++|  +.|+|++|++  .+..|..|..+. 
T Consensus        98 ~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~  165 (520)
T 2z7x_B           98 SFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK-----------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT  165 (520)
T ss_dssp             CSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG-----------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCE
T ss_pred             cCCccccccchhh-hccCCcceEEEecCcccch-----------hhccccccceeeEEEeeccccccccccccccccccc
Confidence            9999986 34454 9999999999999998854           235667777  9999999999  888999888876 


Q ss_pred             CCceEEeeecCCCCcCCcccccCCCCcceeeccCCc-------CCCCCCCcccccccccEEeccCccCcCCccCCCCCCC
Q 002376          225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR-------FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP  297 (929)
Q Consensus       225 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~-------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  297 (929)
                      +...+++++|++.+.++...+..+++|+.++++.|.       +.+.+| .+..+++|+.|++++|.+++..+..+..  
T Consensus       166 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~--  242 (520)
T 2z7x_B          166 ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQ--  242 (520)
T ss_dssp             EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHH--
T ss_pred             ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHH--
Confidence            455678889998888877777777888888888776       666555 6677777777777777666432211100  


Q ss_pred             ccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchh-----hhccccccEEEecCCccccccC-C
Q 002376          298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESI-----GNFSNELSKLYLGGNHIYGKIP-A  371 (929)
Q Consensus       298 ~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~-----~~~~~~L~~L~Ls~N~l~~~~p-~  371 (929)
                                                ....++|++|++++|+++|.+|..+     ..+. .|+.+++++|.+  .+| .
T Consensus       243 --------------------------~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~-~L~~l~l~~n~~--~~p~~  293 (520)
T 2z7x_B          243 --------------------------LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK-ALSIHQVVSDVF--GFPQS  293 (520)
T ss_dssp             --------------------------HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC-EEEEEEEEECCC--CSCTH
T ss_pred             --------------------------HhhhCcccEEEeecccccCccccchhhcccccCc-eeEeccccccce--ecchh
Confidence                                      0012344455555555544444444     3333 455555555544  222 2


Q ss_pred             CCCCC---CcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCccccc--ccCcccc
Q 002376          372 SIGRL---RSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG--EIPISFG  446 (929)
Q Consensus       372 ~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~  446 (929)
                      .+..+   .+|+.|++++|.+.+..  .+..+++|++|++++|++++.+|..+.++++|++|+|++|++++  .+|..|.
T Consensus       294 ~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  371 (520)
T 2z7x_B          294 YIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT  371 (520)
T ss_dssp             HHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT
T ss_pred             hhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHh
Confidence            22222   34555555555544221  11345555555555555555555555555555555555555554  3344455


Q ss_pred             cccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCcccc
Q 002376          447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVA  526 (929)
Q Consensus       447 ~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  526 (929)
                      ++++|++|++++|++++.+|.+       .+..+++|++|+|++|++++.+|..+.  ++|+.|+|++|+|+ .+|..+.
T Consensus       372 ~l~~L~~L~Ls~N~l~~~l~~~-------~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~  441 (520)
T 2z7x_B          372 QMKSLQQLDISQNSVSYDEKKG-------DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV  441 (520)
T ss_dssp             TCTTCCEEECCSSCCBCCGGGC-------SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred             hCCCCCEEECCCCcCCcccccc-------hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence            5555555555555555434221       133445556666666666555554443  56666666666666 4555555


Q ss_pred             CCCCCCEEECCCCcCCCcCCc-ccccCCCCCeEeCCCCcCcccC
Q 002376          527 ELKGLEVLDLSSNKLSGSIPS-DLQNLQALRSLNLTFNNLEGVV  569 (929)
Q Consensus       527 ~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~  569 (929)
                      .+++|++|+|++|++++ +|. .+..+++|++|++++|++++..
T Consensus       442 ~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          442 KLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             GCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccC
Confidence            66666666666666663 443 3666667777777777766543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-46  Score=445.68  Aligned_cols=458  Identities=19%  Similarity=0.223  Sum_probs=348.9

Q ss_pred             EEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccccc
Q 002376           74 IGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMAN  153 (929)
Q Consensus        74 ~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  153 (929)
                      ..+|++++++++ +|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|.++++|++|||++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            678999999995 887775  89999999999999888889999999999999999999888999999999999999999


Q ss_pred             ccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCC--ceEEe
Q 002376          154 KITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSL--VHLRL  231 (929)
Q Consensus       154 ~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~L  231 (929)
                      +|+ .+|..   .+++|++|+|++|++++. |      .|..|+++++|++|+|++|++++.   .+..+++|  ++|+|
T Consensus       111 ~l~-~lp~~---~l~~L~~L~Ls~N~l~~l-~------~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          111 RLQ-NISCC---PMASLRHLDLSFNDFDVL-P------VCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CCC-EECSC---CCTTCSEEECCSSCCSBC-C------CCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             cCC-ccCcc---ccccCCEEECCCCCcccc-C------chHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEe
Confidence            998 67765   799999999999988541 1      235677889999999999998863   45555555  99999


Q ss_pred             eecCC--CCcCCcccccCCC-CcceeeccCCcCCCCCCC-cccccccccEEeccCccCcCCccCCCCCCCccceeccccc
Q 002376          232 ASNQL--GGEIPYDVRDTLP-NLLDFIYCFNRFTGKIPG-SLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFN  307 (929)
Q Consensus       232 s~N~l--~~~ip~~~~~~l~-~L~~l~l~~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  307 (929)
                      ++|++  ++..|..+.. +. ....++++.|.+.+.++. .+.++++|+.+++++|.....                   
T Consensus       177 ~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-------------------  236 (562)
T 3a79_B          177 DLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ-------------------  236 (562)
T ss_dssp             EESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-------------------
T ss_pred             ecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcccccceEEEecccccccccc-------------------
Confidence            99988  7666655443 22 122445556665554432 234555555555555531100                   


Q ss_pred             cccCCCCCCCCccccccCCCCCCCEEEccCCcccccc----CchhhhccccccEEEecCCccccccCCCC-----CCCCc
Q 002376          308 KIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI----PESIGNFSNELSKLYLGGNHIYGKIPASI-----GRLRS  378 (929)
Q Consensus       308 ~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~-----~~l~~  378 (929)
                      .+.        ..+..+..+++|+.|+|+++.+++..    +..+. .. +|++|++++|.++|.+|..+     .+++.
T Consensus       237 ~l~--------~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~-~~-~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          237 RLM--------TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW-PR-PVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             HHH--------HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHT-TS-SEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             hHH--------HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhh-cc-cccEEEEeccEeeccccchhhhcccccchh
Confidence            000        01123455666777777666665432    22221 22 79999999999998888887     88888


Q ss_pred             ccEEEeeCCCCCcccC-ccccCC---CCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccccccee
Q 002376          379 LTLLDLSYNSISGEIP-IEIGQL---QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI  454 (929)
Q Consensus       379 L~~L~Ls~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  454 (929)
                      |+.++++.|.+  .+| ..+..+   .+|++|++++|.+....  ....+++|++|++++|++++.+|..|.++++|+.|
T Consensus       307 L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  382 (562)
T 3a79_B          307 LMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL  382 (562)
T ss_dssp             EEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEE
T ss_pred             eehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEE
Confidence            88888888887  345 333332   67999999999986432  12678899999999999998889999999999999


Q ss_pred             cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCc-chhcCcCcceeecccccccccCCccccCCCCCCE
Q 002376          455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPN-SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV  533 (929)
Q Consensus       455 ~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  533 (929)
                      +|++|++++. +     .+|..+..+++|++|||++|++++.+|. .+..+++|++|+|++|++++.+|..+.  ++|++
T Consensus       383 ~L~~N~l~~~-~-----~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~  454 (562)
T 3a79_B          383 ILQRNGLKNF-F-----KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKV  454 (562)
T ss_dssp             ECCSSCCCBT-T-----HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSE
T ss_pred             ECCCCCcCCc-c-----cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCE
Confidence            9999999752 1     2256688899999999999999985554 588899999999999999988776654  78999


Q ss_pred             EECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCC-CCCCCCCCcccccCCCCCcC
Q 002376          534 LDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPS-EGIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       534 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~~~l~~l~l~~N~~~c~  591 (929)
                      |||++|+++ .+|..+..+++|++|+|++|++++.++. ...+++++.+++++||+.|.
T Consensus       455 L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             EECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             EECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            999999998 6777777999999999999999965544 35578889999999999883

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-47  Score=461.87  Aligned_cols=514  Identities=22%  Similarity=0.278  Sum_probs=416.3

Q ss_pred             ChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCC----CCCCc-ceeeCCCC--CcEEEEEcCCCCCccccCCCCCCCCCCC
Q 002376           26 INTDKEALMSFKSQISQESPSSPLSYWNPSSS----PCTWP-GVICNNFG--NRVIGLNLSSFGLEGTISPHIGNLSFLR   98 (929)
Q Consensus        26 ~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~----~c~w~-gv~c~~~~--~~v~~l~l~~~~l~g~i~~~l~~L~~L~   98 (929)
                      .+.+...-.++++-...-    .-..|+...+    .|.|. +..|+.++  ..|++ +  ..             .+++
T Consensus        25 ~~~~~~d~~aL~~~~~~~----~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C-~--~~-------------~~V~   84 (636)
T 4eco_A           25 TAEYIKDYLALKEIWDAL----NGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL-N--SN-------------GRVT   84 (636)
T ss_dssp             CCHHHHHHHHHHHHHHHT----TGGGCCCCC------CCCCCSSCGGGTTCCTTEEE-C--TT-------------CCEE
T ss_pred             hhhHHHHHHHHHHHHHHc----CCCCcccCCcCCccCCCCCCCCCcccccCCCCeEE-c--CC-------------CCEE
Confidence            345556667777655432    1237985442    24896 44455441  13543 1  10             3578


Q ss_pred             EEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCC------CC------CcccccccccccceecccccccCCCCChhhhcc
Q 002376           99 SIQLQNNKLSGNLPREIGNLFRLRVLNISFNNL------QG------ELPVNISKLTELKMLDLMANKITGRVTDDQLRN  166 (929)
Q Consensus        99 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~  166 (929)
                      .|+|++|.++|.+|++|++|++|++|||++|.+      .|      .+|...  +..|+ +++++|.+.+.++...-..
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~  161 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDL  161 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHH
Confidence            999999999999999999999999999999976      33      344433  56777 8888888887666552222


Q ss_pred             CCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEe--ecccCCCccCCccccCCCCceEEeeecCCCCc-----
Q 002376          167 LRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL--TINRLAGTVPSTIYNMTSLVHLRLASNQLGGE-----  239 (929)
Q Consensus       167 l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~L--s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----  239 (929)
                      +..+..+++....+..              .....++.+++  ..|++++ +|..|+++++|++|+|++|+++|.     
T Consensus       162 ~~~l~~~~l~~~~~~~--------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~  226 (636)
T 4eco_A          162 IKDCINSDPQQKSIKK--------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEA  226 (636)
T ss_dssp             HHHHHHHCTTSCCCCC--------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred             HHHHhhcCcccccccc--------------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccc
Confidence            3344444544433211              11112222223  3689998 899999999999999999999986     


Q ss_pred             ------------CCcccc-cCCCCcceeeccCCcCCCCCCCcccccccccEEeccCcc-CcC-CccCCCCCC------Cc
Q 002376          240 ------------IPYDVR-DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL-LEG-TLPPGLGNL------PF  298 (929)
Q Consensus       240 ------------ip~~~~-~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~  298 (929)
                                  +|..+. ..+++|++|++++|++.+.+|..+.++++|++|++++|+ ++| .+|..++++      ++
T Consensus       227 ~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~  306 (636)
T 4eco_A          227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK  306 (636)
T ss_dssp             CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT
T ss_pred             ccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC
Confidence                        998887 239999999999999999999999999999999999998 998 899888877      99


Q ss_pred             cceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCc
Q 002376          299 LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRS  378 (929)
Q Consensus       299 L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~  378 (929)
                      |++|++++|++..++..      ..+.++++|++|+|++|+++|.+| .+..+. +|++|+|++|+++ .+|..+.++++
T Consensus       307 L~~L~L~~n~l~~ip~~------~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~  377 (636)
T 4eco_A          307 IQIIYIGYNNLKTFPVE------TSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTE  377 (636)
T ss_dssp             CCEEECCSSCCSSCCCH------HHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECT
T ss_pred             CCEEECCCCcCCccCch------hhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcc
Confidence            99999999999854310      168899999999999999999999 888877 8999999999999 88999999999


Q ss_pred             -ccEEEeeCCCCCcccCccccCCC--CCCEEEecCCcCCCCCccccc-------CCCCCceecccCcccccccCcccccc
Q 002376          379 -LTLLDLSYNSISGEIPIEIGQLQ--GLQVLGLAGNEIPGGIPNSLA-------NLKKLNQIDLSGNELTGEIPISFGNF  448 (929)
Q Consensus       379 -L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~~~~l  448 (929)
                       |++|+|++|+++ .+|..+..+.  +|++|++++|++++.+|..+.       .+++|++|+|++|+++...+..+..+
T Consensus       378 ~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l  456 (636)
T 4eco_A          378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG  456 (636)
T ss_dssp             TCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred             cCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence             999999999999 7888887765  899999999999999999998       88899999999999995544556679


Q ss_pred             cccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchh--cCcCcceeecccccccccCCcccc
Q 002376          449 QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLK--NCKSLEELLMAYNQFSGPIPNIVA  526 (929)
Q Consensus       449 ~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~  526 (929)
                      ++|+.|+|++|+++ .+|...+...+..+.++++|+.|||++|+++ .+|..+.  .+++|+.|+|++|+|++ +|..+.
T Consensus       457 ~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~  533 (636)
T 4eco_A          457 SPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL  533 (636)
T ss_dssp             CCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG
T ss_pred             CCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhh
Confidence            99999999999998 7876665544434455669999999999999 7888887  99999999999999998 899999


Q ss_pred             CCCCCCEEEC------CCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCC
Q 002376          527 ELKGLEVLDL------SSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQ  592 (929)
Q Consensus       527 ~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~  592 (929)
                      .+++|++|+|      ++|++.+.+|..+.++++|++|+|++|++ +.+|.. .+++++.+++++|+..|..
T Consensus       534 ~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID  603 (636)
T ss_dssp             GCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred             cCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence            9999999999      56889999999999999999999999999 667765 4489999999999998854

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.4e-45  Score=434.59  Aligned_cols=444  Identities=21%  Similarity=0.211  Sum_probs=283.5

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|||++|+|+ .+|..  .+++|++|||
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            47899999999999888889999999999999999999999999999999999999999999 67766  8999999999


Q ss_pred             cccccCCCCC-hhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcc--cEEEeecccC--CCccCCccccCC-
Q 002376          151 MANKITGRVT-DDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL--KVLDLTINRL--AGTVPSTIYNMT-  224 (929)
Q Consensus       151 s~N~l~~~i~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L--~~L~Ls~N~l--~~~~p~~~~~l~-  224 (929)
                      ++|++++ ++ +..|+++++|++|+|++|++++.           .|..+++|  +.|+|++|++  ++..|..|.++. 
T Consensus       129 s~N~l~~-l~~p~~~~~l~~L~~L~L~~n~l~~~-----------~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~  196 (562)
T 3a79_B          129 SFNDFDV-LPVCKEFGNLTKLTFLGLSAAKFRQL-----------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT  196 (562)
T ss_dssp             CSSCCSB-CCCCGGGGGCTTCCEEEEECSBCCTT-----------TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred             CCCCccc-cCchHhhcccCcccEEecCCCccccC-----------chhhhhhceeeEEEeecccccccccCcccccccCc
Confidence            9999984 44 35599999999999999998541           34445555  9999999999  889999998875 


Q ss_pred             CCceEEeeecCCCCcCCcccccCCCCcceeeccCCc-----CCCCCCCcccccccccEEeccCccCcCCc----cCCCCC
Q 002376          225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR-----FTGKIPGSLHNLTNIQIIRMTHNLLEGTL----PPGLGN  295 (929)
Q Consensus       225 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~-----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~  295 (929)
                      +.-++++++|.+.+.++...+..+++|+.+++++|+     +.+. ...+..+++|+.|+++++.+++..    ++.+ .
T Consensus       197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~  274 (562)
T 3a79_B          197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-W  274 (562)
T ss_dssp             EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-T
T ss_pred             ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcHHHHHHHHHhh-h
Confidence            233679999999998988888889999999999985     2222 234667788888888877765421    1111 1


Q ss_pred             CCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccC-chhhhccccccEEEecCCccccccCCCCC
Q 002376          296 LPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP-ESIGNFSNELSKLYLGGNHIYGKIPASIG  374 (929)
Q Consensus       296 l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  374 (929)
                      .++|++|++++|.+....+...+.  ....+++.|+.++++.|.+  .+| ..+..+.                      
T Consensus       275 ~~~L~~L~l~~n~l~~~ip~~~~~--~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~----------------------  328 (562)
T 3a79_B          275 PRPVEYLNIYNLTITERIDREEFT--YSETALKSLMIEHVKNQVF--LFSKEALYSVF----------------------  328 (562)
T ss_dssp             TSSEEEEEEEEEEECSCCCCCCCC--CCSCSCCEEEEEEEEECCC--SSCHHHHHHHH----------------------
T ss_pred             cccccEEEEeccEeeccccchhhh--cccccchheehhhccccee--ecChhhhhhhh----------------------
Confidence            224555555555544211110000  0013334444444444444  233 1221110                      


Q ss_pred             CCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCccccc--ccCcccccccccc
Q 002376          375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG--EIPISFGNFQSLL  452 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~  452 (929)
                      ...+|++|++++|.+....  ....+++|++|++++|++++.+|..+.++++|++|+|++|++++  .+|..|.++++|+
T Consensus       329 ~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          329 AEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             HTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred             ccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence            0123445555555443211  01344555555555555555455555555555555555555554  2234455555555


Q ss_pred             eecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCC
Q 002376          453 SIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLE  532 (929)
Q Consensus       453 ~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  532 (929)
                      .|++++|++++.+|.+       .+..+++|++|+|++|++++.+|..+.  ++|++|+|++|+|+ .+|..+..+++|+
T Consensus       407 ~L~l~~N~l~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~  476 (562)
T 3a79_B          407 TLDVSLNSLNSHAYDR-------TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ  476 (562)
T ss_dssp             EEECTTSCCBSCCSSC-------CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred             EEECCCCcCCCccChh-------hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence            5555555555434322       123344555555555555554444332  45666666666666 3444444666666


Q ss_pred             EEECCCCcCCCcCCcc-cccCCCCCeEeCCCCcCcccCC
Q 002376          533 VLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       533 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      +|+|++|+|++ +|.. +..+++|+.|++++|++++..|
T Consensus       477 ~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          477 ELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             EEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             EEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            66666666663 3433 6666666666666666665443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.6e-44  Score=411.31  Aligned_cols=410  Identities=23%  Similarity=0.311  Sum_probs=207.2

Q ss_pred             CCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccC
Q 002376           88 SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNL  167 (929)
Q Consensus        88 ~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l  167 (929)
                      .|.-...++|++|++++|++ |.+|++|++|++|++|++++|.++|.+|..++++++|+.++++.|..            
T Consensus         4 ~p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------   70 (454)
T 1jl5_A            4 NPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------   70 (454)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------
T ss_pred             cccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------
Confidence            34444568889999999998 78898899999999999999999888898888888875555554432            


Q ss_pred             CCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccC
Q 002376          168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDT  247 (929)
Q Consensus       168 ~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  247 (929)
                      .++++|++++|.+++ +|.           -.++|++|++++|++++ +|..   +++|++|++++|++++ +|..    
T Consensus        71 ~~l~~L~l~~~~l~~-lp~-----------~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----  129 (454)
T 1jl5_A           71 RQAHELELNNLGLSS-LPE-----------LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----  129 (454)
T ss_dssp             HTCSEEECTTSCCSC-CCS-----------CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----
T ss_pred             cCCCEEEecCCcccc-CCC-----------CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----
Confidence            345556666665543 111           01356666666666665 3432   2556666666666652 3221    


Q ss_pred             CCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCC
Q 002376          248 LPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS  327 (929)
Q Consensus       248 l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l  327 (929)
                      .++|++|++++|++++ +| .+.++++|++|++++|++++ +|..+   ++|++|++++|++..++         .+.++
T Consensus       130 ~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~---------~~~~l  194 (454)
T 1jl5_A          130 PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP---------ELQNL  194 (454)
T ss_dssp             CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC---------CCTTC
T ss_pred             CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc---------cccCC
Confidence            2456666666666665 44 36666666666666666664 44332   36666666666665431         34566


Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  407 (929)
                      ++|++|++++|++++ +|...    .+|++|++++|+++ .+| .++.+++|++|++++|++++ +|..   +++|++|+
T Consensus       195 ~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~  263 (454)
T 1jl5_A          195 PFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALN  263 (454)
T ss_dssp             TTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEE
T ss_pred             CCCCEEECCCCcCCc-CCCCc----CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEE
Confidence            666666666666664 44322    25667777777666 445 36667777777777777664 3332   35667777


Q ss_pred             ecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEE
Q 002376          408 LAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID  487 (929)
Q Consensus       408 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~Ld  487 (929)
                      +++|++++ +|..   .++|++|++++|++++. |..   .++|+.|++++|++++ ++     .+|      ++|+.|+
T Consensus       264 l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~-----~~~------~~L~~L~  323 (454)
T 1jl5_A          264 VRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC-----DLP------PSLEELN  323 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC-----CCC------TTCCEEE
T ss_pred             CCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc-----CCc------CcCCEEE
Confidence            77777665 3432   25667777777777652 211   1466677777776653 21     111      3567777


Q ss_pred             ecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCC--cCCcccccC-------------
Q 002376          488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG--SIPSDLQNL-------------  552 (929)
Q Consensus       488 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l-------------  552 (929)
                      +++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++++  .+|.++..+             
T Consensus       324 Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~  395 (454)
T 1jl5_A          324 VSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP  395 (454)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------
T ss_pred             CCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhccccccccccc
Confidence            77777765 4443   4666777777777763 444   35667777777777776  566666655             


Q ss_pred             CCCCeEeCCCCcCcc--cCCCCCCCCCCCcccccCCCCCc
Q 002376          553 QALRSLNLTFNNLEG--VVPSEGIFRNMSNVHLKGNPKLC  590 (929)
Q Consensus       553 ~~L~~L~Ls~N~l~~--~~p~~~~~~~l~~l~l~~N~~~c  590 (929)
                      ++|++|++++|++++  .+|.     .++.+.+.+|...|
T Consensus       396 ~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~  430 (454)
T 1jl5_A          396 QNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVD  430 (454)
T ss_dssp             ----------------------------------------
T ss_pred             CcCCEEECCCCcCCccccchh-----hHhheeCcCcccCC
Confidence            788999999999987  4553     35556666665444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=4.1e-43  Score=406.65  Aligned_cols=378  Identities=20%  Similarity=0.239  Sum_probs=230.1

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCc-ccccccccccceecccccccCCCCChhhhccCCCCcEE
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL-PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVL  173 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L  173 (929)
                      ++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++ +++..|+++++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ-LETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE-ECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc-cChhhccCcccCCEE
Confidence            67888888888888777888888888888888888877555 4567777788888888877764 333347777777777


Q ss_pred             EccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCc-cccCCCCceEEeeecCCCCcCCcccccCCCCcc
Q 002376          174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPST-IYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLL  252 (929)
Q Consensus       174 ~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~  252 (929)
                      +|++|++++.+|.      +..|..+++|++|+|++|++++..|.. |.++++|++|+|++|++++              
T Consensus       109 ~L~~n~l~~~~~~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--------------  168 (455)
T 3v47_A          109 TLTQCNLDGAVLS------GNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS--------------  168 (455)
T ss_dssp             ECTTSCCBTHHHH------SSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC--------------
T ss_pred             eCCCCCCCccccC------cccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc--------------
Confidence            7777766443221      122555666666666666666555554 5555666666665555553              


Q ss_pred             eeeccCCcCCCCCCCccccc--ccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCC
Q 002376          253 DFIYCFNRFTGKIPGSLHNL--TNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHL  330 (929)
Q Consensus       253 ~l~l~~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L  330 (929)
                                 ..|..+..+  .+|+.|++++|.+.+..+..++.                       .....+..+++|
T Consensus       169 -----------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----------------------~~~~~~~~~~~L  214 (455)
T 3v47_A          169 -----------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----------------------EKCGNPFKNTSI  214 (455)
T ss_dssp             -----------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------------HHHCCTTTTCEE
T ss_pred             -----------cChhhhhccccccccccccccCcccccchhhccc-----------------------ccccccccccee
Confidence                       344444433  56777777777777544422210                       001223455778


Q ss_pred             CEEEccCCccccccCchhhhcc--ccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          331 NYLALDGNQFEGKIPESIGNFS--NELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      ++|+|++|++++.+|..+....  .+|+.|++++|.+.+..              +..+.+.+..+..+..+        
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--------  272 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGL--------  272 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGG--------
T ss_pred             eeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccc--------
Confidence            8888888888877777766541  25666666666554321              11122222222222221        


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                                    ..++|++|++++|++++..|..|.++++|+.|+|++|++++..        |..+..+++|++|+|
T Consensus       273 --------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L  330 (455)
T 3v47_A          273 --------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--------DNAFWGLTHLLKLNL  330 (455)
T ss_dssp             --------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEEC
T ss_pred             --------------cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC--------hhHhcCcccCCEEEC
Confidence                          1134555555555555445555555555555555555554322        334445555566666


Q ss_pred             cCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      ++|++++..|..|+++++|++|+|++|++++.+|..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.
T Consensus       331 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~  410 (455)
T 3v47_A          331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  410 (455)
T ss_dssp             CSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence            66666555566667777777777777777777677777777777777777777766556667777777777777777777


Q ss_pred             CCC
Q 002376          569 VPS  571 (929)
Q Consensus       569 ~p~  571 (929)
                      +|.
T Consensus       411 ~~~  413 (455)
T 3v47_A          411 CPR  413 (455)
T ss_dssp             TTT
T ss_pred             CCc
Confidence            664

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=5.8e-46  Score=400.65  Aligned_cols=240  Identities=23%  Similarity=0.282  Sum_probs=175.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|...++||+|+||+||+|++.+               ..++|.+|++++++++|||||+++|+|.+.      .+|+
T Consensus        35 ~~~l~l~~~iG~G~fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~------~~~i  108 (307)
T 3omv_A           35 ASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKD------NLAI  108 (307)
T ss_dssp             TTSCCEEEECCCCSSSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS------SCEE
T ss_pred             HHHeEEeeEEeeCCCcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECC------eEEE
Confidence            4577788999999999999998752               246799999999999999999999998532      2699


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||||++|+|.++++...         .++.|||.||+|||+.   +||||||||+|||+++++.+||+|||+|+.....
T Consensus       109 VmEy~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  185 (307)
T 3omv_A          109 VTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW  185 (307)
T ss_dssp             EEECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC----
T ss_pred             EEEcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccC
Confidence            999999999999996432         3467999999999998   9999999999999999999999999999876422


Q ss_pred             cCCCCCccccceeccccccccccccCC---CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLG---ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..    .......+||+.|||||++.+   ++|+.++||||+|+++||+.++..++......  +.+...+..... .+.
T Consensus       186 ~~----~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~--~~~~~~~~~~~~-~p~  258 (307)
T 3omv_A          186 SG----SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNR--DQIIFMVGRGYA-SPD  258 (307)
T ss_dssp             ------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHTTCC-CCC
T ss_pred             Cc----ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChH--HHHHHHHhcCCC-CCC
Confidence            11    122345689999999999864   46899999999998888876665555433221  011111111000 000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                       ....+...++.+++++.+||+.||++||||+||++.|+.+...
T Consensus       259 -~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~  301 (307)
T 3omv_A          259 -LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS  301 (307)
T ss_dssp             -STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred             -cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhcc
Confidence             0011111222233488899999999999999999999887543

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=403.58  Aligned_cols=235  Identities=22%  Similarity=0.315  Sum_probs=171.8

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|...++||+|+||+||+|++.                     ...++|.+|+++|++++|||||+++|+|.+.+    
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----  116 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGR----  116 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC----
Confidence            35667789999999999999642                     12467999999999999999999999996543    


Q ss_pred             ceEEEEEEecCCCCccccccccc-----------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER-----------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~-----------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                       ..|+|||||++|+|.++++..+                       .++.|||+||+|||+.   +||||||||+|||++
T Consensus       117 -~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~  192 (329)
T 4aoj_A          117 -PLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG  192 (329)
T ss_dssp             -SEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred             -EEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence             3899999999999999986421                       3467999999999998   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~  855 (929)
                      +++.+||+|||+|+.+....    ........+||+.|||||++.+..|+.++||||+|+++||+.+ ...++.....  
T Consensus       193 ~~~~~Ki~DFGla~~~~~~~----~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~--  266 (329)
T 4aoj_A          193 QGLVVKIGDFGMSRDIYSTD----YYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN--  266 (329)
T ss_dssp             TTTEEEECCCC--------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH--
T ss_pred             CCCcEEEcccccceeccCCC----cceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH--
Confidence            99999999999999763221    1112234579999999999999999999999999988888654 3444332221  


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .++++.-..+     .  +.+.++..++-+.+++.+||+.||++||||+||+++|+.+.+.
T Consensus       267 ~~~~~~i~~g-----~--~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~  320 (329)
T 4aoj_A          267 TEAIDCITQG-----R--ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA  320 (329)
T ss_dssp             HHHHHHHHHT-----C--CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcC-----C--CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence            1222111111     0  0111111222233488899999999999999999999998764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=3.7e-46  Score=402.35  Aligned_cols=236  Identities=25%  Similarity=0.323  Sum_probs=177.8

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|...+.||+|+||+||+|++.                     ...++|.+|+++|++++|||||+++|+|.+.+    
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~----   88 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGD----   88 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCC----
Confidence            46778899999999999999642                     12467999999999999999999999996543    


Q ss_pred             ceEEEEEEecCCCCccccccccc---------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                       ..|+|||||++|+|.++++..+                     .++.|||+||+|||+.   +||||||||+|||++++
T Consensus        89 -~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~  164 (299)
T 4asz_A           89 -PLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN  164 (299)
T ss_dssp             -SEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred             -EEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence             3899999999999999996421                     3467999999999998   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                      +.+||+|||+|+......    ........+||+.|||||++.++.|+.++||||+|+++||+.+ +..++.....  .+
T Consensus       165 ~~~Ki~DFGla~~~~~~~----~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~--~~  238 (299)
T 4asz_A          165 LLVKIGDFGMSRDVYSTD----YYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN--NE  238 (299)
T ss_dssp             GCEEECCCSCHHHHTGGG----CEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--HH
T ss_pred             CcEEECCcccceecCCCC----ceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--HH
Confidence            999999999998763221    1112234579999999999999999999999999988888654 3444433221  12


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ++..-..+..       .+.++..++-+.+++.+||+.||++||||+||++.|+++.+..
T Consensus       239 ~~~~i~~~~~-------~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~  291 (299)
T 4asz_A          239 VIECITQGRV-------LQRPRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS  291 (299)
T ss_dssp             HHHHHHHTCC-------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCC-------CCCCccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence            2111111110       0111112222334888999999999999999999999987653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.3e-42  Score=419.80  Aligned_cols=466  Identities=21%  Similarity=0.190  Sum_probs=377.4

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|||++|++++..+..|.+|++|++|+|++|+|++..+..|.+|++|++|+|++|+|++..+..|+++++|++|+|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            68899999999998777789999999999999999998888899999999999999999998888889999999999999


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCc----ccEEEeecccCCCccCCccccCCCCc
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLEN----LKVLDLTINRLAGTVPSTIYNMTSLV  227 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~----L~~L~Ls~N~l~~~~p~~~~~l~~L~  227 (929)
                      +|++++...+..++++++|++|+|++|++++..|..+        ..+.+    +..++++.|.++.+.+..+.. ..++
T Consensus       157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l--------~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~  227 (635)
T 4g8a_A          157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL--------RVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLH  227 (635)
T ss_dssp             SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG--------HHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEE
T ss_pred             cCccccCCCchhhccchhhhhhcccCccccccccccc--------cchhhhhhhhhhhhcccCcccccCcccccc-hhhh
Confidence            9999854344558999999999999999876555443        33333    346788888888666555443 4567


Q ss_pred             eEEeeecCCCCcCCcccccCCCCcceeecc------------------------------CCc---CCCCCCCccccccc
Q 002376          228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYC------------------------------FNR---FTGKIPGSLHNLTN  274 (929)
Q Consensus       228 ~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~------------------------------~N~---l~~~~p~~~~~l~~  274 (929)
                      .|++++|.....++...+..++.++...+.                              .+.   ....++..+..+.+
T Consensus       228 ~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~  307 (635)
T 4g8a_A          228 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTN  307 (635)
T ss_dssp             EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTT
T ss_pred             hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcc
Confidence            777877766544433333334444333221                              111   11123345566778


Q ss_pred             ccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcccc
Q 002376          275 IQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNE  354 (929)
Q Consensus       275 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  354 (929)
                      ++.+++.+|.+....  .+.....|+.|++..|.+.....          ..+..|+.++++.|.+....+  ...++ +
T Consensus       308 l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~----------~~l~~L~~l~l~~n~~~~~~~--~~~l~-~  372 (635)
T 4g8a_A          308 VSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT----------LKLKSLKRLTFTSNKGGNAFS--EVDLP-S  372 (635)
T ss_dssp             CSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC----------CBCTTCCEEEEESCCSCCBCC--CCBCT-T
T ss_pred             ccccccccccccccc--ccccchhhhhhhcccccccCcCc----------ccchhhhhcccccccCCCCcc--ccccc-c
Confidence            999999999887543  35667789999999998876532          346789999999998874432  23455 7


Q ss_pred             ccEEEecCCcccc--ccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCc-ccccCCCCCceec
Q 002376          355 LSKLYLGGNHIYG--KIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP-NSLANLKKLNQID  431 (929)
Q Consensus       355 L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~  431 (929)
                      |+.|+++.|.+..  ..+..+..+.+|++|+++.|.+.. .+..+..+++|+.++++.|......+ ..|..+++++.++
T Consensus       373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~  451 (635)
T 4g8a_A          373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  451 (635)
T ss_dssp             CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred             cccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccc
Confidence            9999999999864  455667788999999999999874 56678899999999999988766554 5688999999999


Q ss_pred             ccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceee
Q 002376          432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELL  511 (929)
Q Consensus       432 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~  511 (929)
                      ++.|.+++..|..+..+++|+.|+|++|++.+.++       |..+..+++|++|||++|++++.+|..|.++++|++|+
T Consensus       452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-------~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-------PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-------CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccC-------chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            99999999999999999999999999998654332       56778889999999999999999999999999999999


Q ss_pred             cccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccC-CCCCeEeCCCCcCcccC
Q 002376          512 MAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL-QALRSLNLTFNNLEGVV  569 (929)
Q Consensus       512 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~  569 (929)
                      |++|+|++.+|..|..+++|++|||++|+|++..|..+..+ ++|++|+|++|+|++..
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence            99999999999999999999999999999999999999988 68999999999998753

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=8.8e-46  Score=401.18  Aligned_cols=231  Identities=19%  Similarity=0.248  Sum_probs=175.0

Q ss_pred             CCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          662 NFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +++..+.||+|+||+||+|++.                      ...++|.+|+.++++++|||||+++|+|.+.+    
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~----  102 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQ----  102 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS----
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECC----
Confidence            4556789999999999998752                      12468999999999999999999999996543    


Q ss_pred             ceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL  775 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl  775 (929)
                       ..++|||||++|+|.++++...                        .++.|||+||+|||+.   +||||||||+|||+
T Consensus       103 -~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl  178 (308)
T 4gt4_A          103 -PLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLV  178 (308)
T ss_dssp             -SCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEE
T ss_pred             -EEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEE
Confidence             3799999999999999985321                        2467999999999998   89999999999999


Q ss_pred             cCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCch
Q 002376          776 DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPEN  854 (929)
Q Consensus       776 ~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~  854 (929)
                      ++++.+||+|||+|+.+.....    .......+||++|||||++.++.|+.++||||||+++||+.+ ...++..... 
T Consensus       179 ~~~~~~Ki~DFGlar~~~~~~~----~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-  253 (308)
T 4gt4_A          179 YDKLNVKISDLGLFREVYAADY----YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-  253 (308)
T ss_dssp             CGGGCEEECCSCCBCGGGGGGC----BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-
T ss_pred             CCCCCEEECCcccceeccCCCc----eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCH-
Confidence            9999999999999997643211    112334579999999999999999999999999988888654 2333322221 


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                       .+     +...+...... +...++...+. +++.+||+.||++||||+||+++|+.+
T Consensus       254 -~~-----~~~~i~~~~~~-~~p~~~~~~~~-~li~~C~~~dP~~RPs~~ei~~~L~a~  304 (308)
T 4gt4_A          254 -QD-----VVEMIRNRQVL-PCPDDCPAWVY-ALMIECWNEFPSRRPRFKDIHSRLRAW  304 (308)
T ss_dssp             -HH-----HHHHHHTTCCC-CCCTTCCHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred             -HH-----HHHHHHcCCCC-CCcccchHHHH-HHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence             11     11111111100 01112223333 488899999999999999999999864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.5e-43  Score=386.64  Aligned_cols=293  Identities=29%  Similarity=0.502  Sum_probs=229.1

Q ss_pred             cCChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCC--CcceeeCCCC--CcEEEEEcCCCCCcc--ccCCCCCCCCCC
Q 002376           24 VGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCT--WPGVICNNFG--NRVIGLNLSSFGLEG--TISPHIGNLSFL   97 (929)
Q Consensus        24 ~~~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~g--~i~~~l~~L~~L   97 (929)
                      .|.++|++||++||+++.+  |. .+++|+.+.+||.  |.||+|+..+  ++|+.|+|++++++|  .+|+.|+++++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~~--~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGN--PT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTC--CG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcCC--cc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            5889999999999999853  44 7899998889998  9999999765  799999999999999  999999999999


Q ss_pred             CEEEeec-CCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEcc
Q 002376           98 RSIQLQN-NKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG  176 (929)
Q Consensus        98 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls  176 (929)
                      ++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|.. |.++++|++|+|+
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECc
Confidence            9999995 9999999999999999999999999999999999999999999999999998777665 8888888888888


Q ss_pred             ccccCCCCCccccccCCCccCCCC-cccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceee
Q 002376          177 KNLLWGSIPPSIANLIPSDLSRLE-NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI  255 (929)
Q Consensus       177 ~N~l~~~~p~~i~~l~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~  255 (929)
                      +|++++.+|..        |..++ +|++|+|++|++++..|..|..++ |++|+|++|+++                  
T Consensus       158 ~N~l~~~~p~~--------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~------------------  210 (313)
T 1ogq_A          158 GNRISGAIPDS--------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE------------------  210 (313)
T ss_dssp             SSCCEEECCGG--------GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE------------------
T ss_pred             CCcccCcCCHH--------HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc------------------
Confidence            88876655543        34455 777777777777777777777665 777777666665                  


Q ss_pred             ccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEc
Q 002376          256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLAL  335 (929)
Q Consensus       256 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~L  335 (929)
                             +.+|..|..+++|+.|+|++|.+++.+|.                                +..+++|++|+|
T Consensus       211 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--------------------------------~~~l~~L~~L~L  251 (313)
T 1ogq_A          211 -------GDASVLFGSDKNTQKIHLAKNSLAFDLGK--------------------------------VGLSKNLNGLDL  251 (313)
T ss_dssp             -------ECCGGGCCTTSCCSEEECCSSEECCBGGG--------------------------------CCCCTTCCEEEC
T ss_pred             -------CcCCHHHhcCCCCCEEECCCCceeeecCc--------------------------------ccccCCCCEEEC
Confidence                   34555566667777777777777655442                                233455666666


Q ss_pred             cCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCC
Q 002376          336 DGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS  388 (929)
Q Consensus       336 s~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  388 (929)
                      ++|++++.+|..+..+. +|++|+|++|+++|.+|.. +.+++|+.|++++|.
T Consensus       252 s~N~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          252 RNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             cCCcccCcCChHHhcCc-CCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            66666666666666655 5666666666666666665 666666666676666

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=1.7e-42  Score=398.98  Aligned_cols=407  Identities=23%  Similarity=0.263  Sum_probs=273.1

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCC-------------cEEeCCCCCCCCCccc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL-------------RVLNISFNNLQGELPV  137 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------------~~L~Ls~N~l~~~~p~  137 (929)
                      .++..++++++++ |.+|+++++|++|++|+|++|.+.|.+|.+++++++|             ++|++++|.+++ +|.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence            3788999999999 8999999999999999999999999999999999875             999999999996 444


Q ss_pred             ccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccC
Q 002376          138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVP  217 (929)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p  217 (929)
                      .   .++|++|++++|++++ +|..    +++|++|++++|++++ +|.           ..++|++|+|++|++++ +|
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~-----------~~~~L~~L~L~~n~l~~-lp  147 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSD-----------LPPLLEYLGVSNNQLEK-LP  147 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCS-----------CCTTCCEEECCSSCCSS-CC
T ss_pred             C---cCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccC-----------CCCCCCEEECcCCCCCC-Cc
Confidence            2   3789999999999996 7753    4899999999999864 221           01689999999999997 66


Q ss_pred             CccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCC
Q 002376          218 STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP  297 (929)
Q Consensus       218 ~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  297 (929)
                       .|.++++|++|++++|++++ +|..    .++|++|++++|++++ +| .+.++++|+.|++++|.+++ +|...   +
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~  215 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---L  215 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---T
T ss_pred             -ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---C
Confidence             59999999999999999984 6653    4589999999999998 56 68999999999999999996 45433   5


Q ss_pred             ccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC
Q 002376          298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR  377 (929)
Q Consensus       298 ~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  377 (929)
                      +|++|++++|.+..++         .+..+++|++|++++|++++ +|...    .+|++|++++|++++ +|..   .+
T Consensus       216 ~L~~L~l~~n~l~~lp---------~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          216 SLESIVAGNNILEELP---------ELQNLPFLTTIYADNNLLKT-LPDLP----PSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             TCCEEECCSSCCSSCC---------CCTTCTTCCEEECCSSCCSS-CCSCC----TTCCEEECCSSCCSC-CCCC---CT
T ss_pred             cccEEECcCCcCCccc---------ccCCCCCCCEEECCCCcCCc-ccccc----cccCEEECCCCcccc-cCcc---cC
Confidence            8999999999987543         36788999999999999985 56532    479999999999986 5544   37


Q ss_pred             cccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCC-CCCceecccCcccccccCcccccccccceecc
Q 002376          378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANL-KKLNQIDLSGNELTGEIPISFGNFQSLLSIDL  456 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  456 (929)
                      +|++|++++|++++. |..   .++|++|++++|++++ ++    .+ ++|++|++++|++++ +|..   +++|++|++
T Consensus       278 ~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L  344 (454)
T 1jl5_A          278 SLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIA  344 (454)
T ss_dssp             TCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred             cCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEEC
Confidence            899999999999862 321   2689999999999985 22    23 589999999999986 5654   578999999


Q ss_pred             cCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCC--CCCcchhcCcCcceeecccccccccCCccccCCCCCCEE
Q 002376          457 SNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG--NLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL  534 (929)
Q Consensus       457 s~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  534 (929)
                      ++|+++ .+        |.   .+++|++|||++|++++  .+|.++++        |+.|.+.|.+|..   +++|++|
T Consensus       345 ~~N~l~-~l--------p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L  401 (454)
T 1jl5_A          345 SFNHLA-EV--------PE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQL  401 (454)
T ss_dssp             CSSCCS-CC--------CC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC------------------
T ss_pred             CCCccc-cc--------cc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEE
Confidence            999987 34        33   35789999999999998  67776654        3457777788764   5789999


Q ss_pred             ECCCCcCCC--cCCcccccCCCCCeEeCCCCcCcccCCCC
Q 002376          535 DLSSNKLSG--SIPSDLQNLQALRSLNLTFNNLEGVVPSE  572 (929)
Q Consensus       535 ~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  572 (929)
                      |+++|++++  .+|.+      ++.|.+.+|.+.+.+|..
T Consensus       402 ~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~  435 (454)
T 1jl5_A          402 HVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA  435 (454)
T ss_dssp             ----------------------------------------
T ss_pred             ECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence            999999997  66644      566778999998877644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=9.3e-42  Score=395.31  Aligned_cols=364  Identities=21%  Similarity=0.252  Sum_probs=273.3

Q ss_pred             CcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEe
Q 002376          200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIR  279 (929)
Q Consensus       200 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~  279 (929)
                      ++|++|+|++|++++..|..|.++++|++|+|++|.+.+.++...+..+++|++|++++|++++..|..|.++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            35555556666665555556666666666666666665555555444566666666666666666677777777777777


Q ss_pred             ccCccCcCCccCC--CCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcc-cccc
Q 002376          280 MTHNLLEGTLPPG--LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFS-NELS  356 (929)
Q Consensus       280 Ls~N~l~~~~p~~--~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-~~L~  356 (929)
                      |++|.+++..|..  |..+++|++|++++|++......      ..+.++++|++|+|++|++++..|..+..+. .+|+
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~  183 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT  183 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------cccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence            7777777644433  77777777777777776654321      1256777888888888888877777766552 2688


Q ss_pred             EEEecCCccccccCCCC--------CCCCcccEEEeeCCCCCcccCccccCC---CCCCEEEecCCcCCCCCcccccCCC
Q 002376          357 KLYLGGNHIYGKIPASI--------GRLRSLTLLDLSYNSISGEIPIEIGQL---QGLQVLGLAGNEIPGGIPNSLANLK  425 (929)
Q Consensus       357 ~L~Ls~N~l~~~~p~~~--------~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~  425 (929)
                      .|++++|.+.+..+..+        ..+++|++|+|++|++++..|..+..+   ++|+.|++++|.+.+..        
T Consensus       184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------  255 (455)
T 3v47_A          184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------  255 (455)
T ss_dssp             EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------
T ss_pred             ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------
Confidence            88888888876655443        356788888888888888777776554   77888888888765421        


Q ss_pred             CCceecccCcccccccCccccc--ccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhc
Q 002376          426 KLNQIDLSGNELTGEIPISFGN--FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN  503 (929)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~  503 (929)
                            +..+.+.+..+..|..  .++|+.|++++|++++.+        |..+..+++|++|+|++|++++..|..|.+
T Consensus       256 ------~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  321 (455)
T 3v47_A          256 ------FGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--------KSVFSHFTDLEQLTLAQNEINKIDDNAFWG  321 (455)
T ss_dssp             ------TTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             ------cchhhhccCcccccccccccCceEEEecCccccccc--------hhhcccCCCCCEEECCCCcccccChhHhcC
Confidence                  1222333333334443  368999999999998654        677888999999999999999999999999


Q ss_pred             CcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC-CCCCCCCccc
Q 002376          504 CKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE-GIFRNMSNVH  582 (929)
Q Consensus       504 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~l~~l~  582 (929)
                      +++|++|+|++|++++..|..|+.+++|++|||++|++++..|..|.++++|++|+|++|++++.++.. ..+++++.++
T Consensus       322 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999876654 5678999999


Q ss_pred             ccCCCCCcC
Q 002376          583 LKGNPKLCL  591 (929)
Q Consensus       583 l~~N~~~c~  591 (929)
                      +++|++.|.
T Consensus       402 l~~N~l~~~  410 (455)
T 3v47_A          402 LHTNPWDCS  410 (455)
T ss_dssp             CCSSCBCCC
T ss_pred             ccCCCcccC
Confidence            999999885

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=7.5e-45  Score=400.80  Aligned_cols=247  Identities=19%  Similarity=0.290  Sum_probs=185.5

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCC-ccccce
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRH-RNLVKL  707 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~H-pniv~l  707 (929)
                      ++.++++...++|+..+.||+|+||+||+|++.                      ...++|.+|+++|++++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            344566667789999999999999999998643                      124579999999999965 999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCE
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPV  763 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~i  763 (929)
                      +|+|.+.+    ..+++|||||++|+|.++++..+                        .++.|||+||+|||+.   +|
T Consensus       134 ~g~~~~~~----~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~i  206 (353)
T 4ase_A          134 LGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KC  206 (353)
T ss_dssp             EEEECCTT----SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred             EEEEEecC----CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Ce
Confidence            99996533    23799999999999999996422                        2356999999999998   99


Q ss_pred             EecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch
Q 002376          764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       764 iHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                      |||||||+|||+++++.+||+|||+|+.+...    .........+||+.|||||++.++.|+.++||||+||++||+.+
T Consensus       207 iHRDLK~~NILl~~~~~vKi~DFGlar~~~~~----~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t  282 (353)
T 4ase_A          207 IHRDLAARNILLSEKNVVKICDFGLARDIYKD----PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  282 (353)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCGGGSCTTTC----TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ecCccCccceeeCCCCCEEECcchhhhhcccC----CCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHh
Confidence            99999999999999999999999999976322    11122345689999999999999999999999999988888653


Q ss_pred             -hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhH-HHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          844 -VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHD-CLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       844 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                       +..++....  ..+.+...+..    ..  +...++ +..++. +++.+||+.||++||||+||++.|+++.+..
T Consensus       283 ~G~~Pf~~~~--~~~~~~~~i~~----g~--~~~~p~~~~~~~~-~li~~c~~~dP~~RPt~~eil~~L~~llq~~  349 (353)
T 4ase_A          283 LGASPYPGVK--IDEEFCRRLKE----GT--RMRAPDYTTPEMY-QTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  349 (353)
T ss_dssp             TSCCSSTTCC--CSHHHHHHHHH----TC--CCCCCTTCCHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCC--HHHHHHHHHHc----CC--CCCCCccCCHHHH-HHHHHHcCcChhHCcCHHHHHHHHHHHHHHh
Confidence             333332221  11111111211    11  111111 222333 3888999999999999999999999987653

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.2e-44  Score=393.27  Aligned_cols=251  Identities=22%  Similarity=0.252  Sum_probs=175.2

Q ss_pred             CCCCceeecccCceeEEeccccC-----------cHHHHH--HHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------SWKSFI--AECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~--~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      +|...++||+|+||+||+|++.+           ..+.+.  +|+..+.+++|||||+++|+|.+.+. ....+|+||||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~-~~~~~~lV~Ey   82 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNG-TWTQLWLVSDY   82 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECS-SSEEEEEEEEC
T ss_pred             EEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CceEEEEEecC
Confidence            56778999999999999998763           233444  45556678899999999999976442 23458999999


Q ss_pred             cCCCCccccccccc-------cccccHHHHHHHhhhC-----CCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          729 LSNGSLGDWIHGER-------KNELDITSALDYLHND-----CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~-----~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      |++|+|.++++...       .++.|+|+||+|||++     +.++||||||||+|||+|+++.+||+|||+|+......
T Consensus        83 ~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~  162 (303)
T 3hmm_A           83 HEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT  162 (303)
T ss_dssp             CTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTT
T ss_pred             CCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCC
Confidence            99999999997432       4478999999999986     25689999999999999999999999999998764321


Q ss_pred             CCCCCccccceeccccccccccccCCC------CCCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhcc--C---hH
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGE------RPSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVL--D---PE  862 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~--~---~~  862 (929)
                      ..  ........+||++|||||++.+.      .++.++||||+|+++||+.+...++....+   ......  +   ..
T Consensus       163 ~~--~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~  240 (303)
T 3hmm_A          163 DT--IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE  240 (303)
T ss_dssp             TE--ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred             Cc--eeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHH
Confidence            11  11122346899999999999765      367899999999998887654333222111   111110  0   11


Q ss_pred             HHHhhccc-----chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          863 LRQLMTSN-----ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       863 l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      +.......     .+......++...+.+ ++.+||+.||++||||+||+++|+++.++
T Consensus       241 ~~~~~~~~~~rp~~p~~~~~~~~~~~l~~-li~~cl~~dP~~RPt~~ei~~~L~~l~~~  298 (303)
T 3hmm_A          241 MRKVVCEQKLRPNIPNRWQSCEALRVMAK-IMRECWYANGAARLTALRIKKTLSQLSQQ  298 (303)
T ss_dssp             HHHHHTTSCCCCCCCGGGGSSHHHHHHHH-HHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             HHHHHhcccCCCCCCccccchHHHHHHHH-HHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence            11111100     0111111123333444 89999999999999999999999998753

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=2.1e-44  Score=392.08  Aligned_cols=244  Identities=18%  Similarity=0.175  Sum_probs=179.1

Q ss_pred             hhCCCCCceeecccCceeEEeccccCc-----------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGS-----------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~-----------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      ..+.|+..++||+|+||+||+|++...           ...+.+|+.++++++|||||++++++.+     ...+|+|||
T Consensus        56 ~~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~~~E~~il~~l~HpnIV~l~~~~~~-----~~~~~ivmE  130 (336)
T 4g3f_A           56 EVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFRVEELVACAGLSSPRIVPLYGAVRE-----GPWVNIFME  130 (336)
T ss_dssp             TTTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCTHHHHTTTTCCCTTBCCEEEEEEE-----TTEEEEEEC
T ss_pred             chhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEEEEEe
Confidence            345678888999999999999987622           1223589999999999999999999854     345899999


Q ss_pred             ecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEeccccccccccccCC
Q 002376          728 FLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~~~~~~  798 (929)
                      ||++|+|.+++++..        .++.||+.||+|||++   +||||||||+|||++.+| .+||+|||+|+.+......
T Consensus       131 y~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~  207 (336)
T 4g3f_A          131 LLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG  207 (336)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC------
T ss_pred             ccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc
Confidence            999999999997433        3467999999999998   999999999999999988 6999999999976432111


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLH  878 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  878 (929)
                       ........++||+.|||||++.+..|+.++||||+||++|++..+..++.....  .+++ ..+..   ... .....+
T Consensus       208 -~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~-~~i~~---~~~-~~~~~~  279 (336)
T 4g3f_A          208 -KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR--GPLC-LKIAS---EPP-PIREIP  279 (336)
T ss_dssp             -------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC--SCCH-HHHHH---SCC-GGGGSC
T ss_pred             -cceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH--HHHH-HHHHc---CCC-CchhcC
Confidence             111122346899999999999999999999999999888777655544432211  1111 11111   111 001111


Q ss_pred             HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          879 DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       879 ~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ..++..+++++.+||+.||++|||++|+++.|..+.+...
T Consensus       280 ~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          280 PSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             ccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence            2233344457779999999999999999999988877654

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.2e-43  Score=379.77  Aligned_cols=227  Identities=24%  Similarity=0.357  Sum_probs=167.4

Q ss_pred             CCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          664 SHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      +..++||+|+||+||+|.+..                  ..+.|.+|++++++++|||||+++++|.+.. .....+|+|
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~-~~~~~~~lv  107 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV-KGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEE-TTEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeecc-CCCcEEEEE
Confidence            566789999999999997651                  2457999999999999999999999985432 234568999


Q ss_pred             EEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||||++|+|.+++++..        .++.||+.||+|||++ .++||||||||+|||++ +++.+||+|||+|+....  
T Consensus       108 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~--  184 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--  184 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT--
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC--
Confidence            99999999999997432        3467999999999997 22499999999999998 479999999999985421  


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            ......+||+.|||||++.+ +|+.++||||+||++|++.++..++..... ..+     +......... ...
T Consensus       185 ------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~-~~~-----~~~~i~~~~~-~~~  250 (290)
T 3fpq_A          185 ------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN-AAQ-----IYRRVTSGVK-PAS  250 (290)
T ss_dssp             ------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS-HHH-----HHHHHTTTCC-CGG
T ss_pred             ------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc-HHH-----HHHHHHcCCC-CCC
Confidence                  12345689999999999865 699999999999888887666555533221 011     1111111100 001


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+.....-+++++.+||+.||++|||++|+++
T Consensus       251 ~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~  282 (290)
T 3fpq_A          251 FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11111122334777999999999999999875

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=6.4e-44  Score=389.38  Aligned_cols=227  Identities=22%  Similarity=0.249  Sum_probs=175.1

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|+..+.||+|+||+||+|++.                ...+.+.+|+++|++++|||||++++++.+.     ..+|+
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-----~~~~i  148 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-----DELWV  148 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----CEEEE
Confidence            46888999999999999999875                2345688999999999999999999999653     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||||++|+|.++++..+       .++.||+.||+|||+.   +||||||||+|||++.+|.+||+|||+|+.+...  
T Consensus       149 vmEy~~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~--  223 (346)
T 4fih_A          149 VMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--  223 (346)
T ss_dssp             EECCCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred             EEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCC--
Confidence            999999999999986432       3467999999999998   9999999999999999999999999999876322  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          .......+||+.|||||++.+..|+.++||||+||++|++..+..++.....  .+.+. .+......    ....
T Consensus       224 ----~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~-~i~~~~~~----~~~~  292 (346)
T 4fih_A          224 ----VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMK-MIRDNLPP----RLKN  292 (346)
T ss_dssp             ----SCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHH-HHHHSSCC----CCSC
T ss_pred             ----CCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHH-HHHcCCCC----CCCc
Confidence                1223456899999999999999999999999999888887665555433221  11111 11111111    1111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +..++..+++++.+||+.||++|||++|+++
T Consensus       293 ~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~  323 (346)
T 4fih_A          293 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  323 (346)
T ss_dssp             GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1222333444777999999999999999875

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=5.6e-43  Score=391.31  Aligned_cols=227  Identities=22%  Similarity=0.250  Sum_probs=175.2

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|+..+.||+|+||+||+|++.                ...+.+.+|+.+|++++|||||+++++|.+.     ..+|+
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-----~~~~i  225 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-----DELWV  225 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEEC-----CEEEE
Confidence            56899999999999999999865                2345688999999999999999999999653     35899


Q ss_pred             EEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||||++|+|.++++..+       .++.||+.||+|||++   +||||||||+|||++.+|.+||+|||+|+.+...  
T Consensus       226 VmEy~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~--  300 (423)
T 4fie_A          226 VMEFLEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE--  300 (423)
T ss_dssp             EEECCTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSS--
T ss_pred             EEeCCCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCC--
Confidence            999999999999986432       3467999999999998   9999999999999999999999999999876322  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          .......+||+.|||||++.+..|+.++||||+||++|++..+..++.....  .+.+. .+.......    ...
T Consensus       301 ----~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~--~~~~~-~i~~~~~~~----~~~  369 (423)
T 4fie_A          301 ----VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP--LKAMK-MIRDNLPPR----LKN  369 (423)
T ss_dssp             ----CCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHH-HHHHSCCCC----CSC
T ss_pred             ----CccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHHH-HHHcCCCCC----Ccc
Confidence                1223456899999999999999999999999999888877665555433221  11111 111111111    111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +..++..+++++.+||+.||++|||++|+++
T Consensus       370 ~~~~s~~~~dli~~~L~~dP~~R~ta~ell~  400 (423)
T 4fie_A          370 LHKVSPSLKGFLDRLLVRDPAQRATAAELLK  400 (423)
T ss_dssp             TTSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            1112233344777999999999999999875

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.6e-43  Score=380.36  Aligned_cols=225  Identities=23%  Similarity=0.295  Sum_probs=174.1

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++.                   ...+.+.+|++++++++|||||++++++.+     ...
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~  106 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----DEK  106 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CCE
Confidence            57999999999999999999765                   124568899999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+|||||++|+|.+++++..        .++.||+.||+|||++   +||||||||+|||+++++.+||+|||+|+.+.
T Consensus       107 ~yivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~  183 (311)
T 4aw0_A          107 LYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLS  183 (311)
T ss_dssp             EEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecC
Confidence            899999999999999987432        3467999999999998   99999999999999999999999999999764


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..    ........++||+.|||||++.+..|+.++||||+||++|++..+..++....  ..+++......    ... 
T Consensus       184 ~~----~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~--~~~~~~~i~~~----~~~-  252 (311)
T 4aw0_A          184 PE----SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN--EGLIFAKIIKL----EYD-  252 (311)
T ss_dssp             TT----TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHT----CCC-
T ss_pred             CC----CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC--HHHHHHHHHcC----CCC-
Confidence            22    11122345689999999999999999999999999988777665554443221  11222111111    111 


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                         .++.++.-+++++.+|++.||++|||++|+.
T Consensus       253 ---~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~  283 (311)
T 4aw0_A          253 ---FPEKFFPKARDLVEKLLVLDATKRLGCEEME  283 (311)
T ss_dssp             ---CCTTCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred             ---CCcccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence               1112223344577799999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=3.3e-40  Score=380.20  Aligned_cols=364  Identities=20%  Similarity=0.217  Sum_probs=258.0

Q ss_pred             CccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChh
Q 002376           83 LEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDD  162 (929)
Q Consensus        83 l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~  162 (929)
                      ..+..+.+++++++|++|+|++|.+++. | .|+.+++|++|+|++|+|++. |  ++.+++|++|+|++|+|++ ++  
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--  101 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--  101 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--
Confidence            3445556788888999999999988864 5 688888999999999998864 4  8888888888888888885 43  


Q ss_pred             hhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCc
Q 002376          163 QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPY  242 (929)
Q Consensus       163 ~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~  242 (929)
                       ++++++|++|++++|++++ +        |  ++.+++|++|++++|++++.   .+.++++|++|++++|+..+.++ 
T Consensus       102 -~~~l~~L~~L~L~~N~l~~-l--------~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~-  165 (457)
T 3bz5_A          102 -VTPLTKLTYLNCDTNKLTK-L--------D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD-  165 (457)
T ss_dssp             -CTTCTTCCEEECCSSCCSC-C--------C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC-
T ss_pred             -cCCCCcCCEEECCCCcCCe-e--------c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc-
Confidence             7788888888888887754 1        1  56777888888888888764   26677777777777775443332 


Q ss_pred             ccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCcccc
Q 002376          243 DVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFIT  322 (929)
Q Consensus       243 ~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~  322 (929)
                                                +..+++|+.|++++|++++ +|  ++.+++|+.|++++|++...          
T Consensus       166 --------------------------~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----------  206 (457)
T 3bz5_A          166 --------------------------VTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----------  206 (457)
T ss_dssp             --------------------------CTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----------
T ss_pred             --------------------------cccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee----------
Confidence                                      3344555555555555554 23  55555555555555555432          


Q ss_pred             ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCC
Q 002376          323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG  402 (929)
Q Consensus       323 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  402 (929)
                      .+..+++|++|+|++|++++ +|  +..++ +|+.|++++|++++..   ++.+++|+.|++++|+              
T Consensus       207 ~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------  265 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------  265 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------
T ss_pred             ccccCCCCCEEECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------
Confidence            24455667777777777765 45  45554 5777777777776643   3455667777766653              


Q ss_pred             CCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccC
Q 002376          403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN  482 (929)
Q Consensus       403 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~  482 (929)
                      |+.|++++|.+.+.+|  +..+++|+.|++++|.+.+.+|.   ...+|+.|++++|                     ++
T Consensus       266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~---------------------~~  319 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN---------------------PK  319 (457)
T ss_dssp             CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC---------------------TT
T ss_pred             CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc---------------------cc
Confidence            4456677777666665  45677777888888777766664   3355666666555                     36


Q ss_pred             ccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCC
Q 002376          483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTF  562 (929)
Q Consensus       483 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  562 (929)
                      |++|+|++|++++. +  ++++++|+.|++++|+|++        ++.|..|++++|+++|.     ..+..|..+++++
T Consensus       320 L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~  383 (457)
T 3bz5_A          320 LVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTN  383 (457)
T ss_dssp             CCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBT
T ss_pred             CCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCcccccc
Confidence            88999999999984 3  8889999999999999986        35677788999999876     3556788899999


Q ss_pred             CcCcccCCCC
Q 002376          563 NNLEGVVPSE  572 (929)
Q Consensus       563 N~l~~~~p~~  572 (929)
                      |+++|.+|..
T Consensus       384 N~l~g~ip~~  393 (457)
T 3bz5_A          384 NSLTIAVSPD  393 (457)
T ss_dssp             TBEEEECCTT
T ss_pred             CcEEEEcChh
Confidence            9999999865

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=1.1e-42  Score=380.35  Aligned_cols=225  Identities=21%  Similarity=0.293  Sum_probs=167.9

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||+||+|++..                  ..+.|.+|++++++++|||||++++++.+     ...+
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-----~~~~   98 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-----NGSL   98 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-----CCEE
Confidence            689999999999999999997651                  24578999999999999999999999854     3458


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |+|||||++|+|.++++..+          .++.||+.||+|||+.   +||||||||+|||+++++.+||+|||+|+.+
T Consensus        99 yiVmEy~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~  175 (350)
T 4b9d_A           99 YIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVL  175 (350)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceee
Confidence            99999999999999986322          2367999999999998   9999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...      .......+||+.|||||++.+..|+.++||||+||++|++..+..++....  ..+++........+   .
T Consensus       176 ~~~------~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~--~~~~~~~i~~~~~~---~  244 (350)
T 4b9d_A          176 NST------VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS--MKNLVLKIISGSFP---P  244 (350)
T ss_dssp             CHH------HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHTCCC---C
T ss_pred             cCC------cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC--HHHHHHHHHcCCCC---C
Confidence            321      112345689999999999999999999999999988877665554443221  12222221221111   1


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    ++.-+++++.+||+.||++|||++|+++
T Consensus       245 ~~~~----~s~~~~~li~~~L~~dP~~R~s~~e~l~  276 (350)
T 4b9d_A          245 VSLH----YSYDLRSLVSQLFKRNPRDRPSVNSILE  276 (350)
T ss_dssp             CCTT----SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCcc----CCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1111    2223344777999999999999999975

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=4.5e-40  Score=379.12  Aligned_cols=352  Identities=18%  Similarity=0.211  Sum_probs=243.8

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|+++++.+++. | .++.+++|++|+|++|++++. |  ++.+++|++|+|++|+|++. |  ++++++|++|+|+
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            688999999999974 4 799999999999999999975 4  99999999999999999975 4  8999999999999


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEe
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRL  231 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  231 (929)
                      +|++++ ++   ++++++|++|++++|++++.           .++.+++|++|++++|+..+.+  .+..+++|++|++
T Consensus       115 ~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l-----------~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          115 TNKLTK-LD---VSQNPLLTYLNCARNTLTEI-----------DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             SSCCSC-CC---CTTCTTCCEEECTTSCCSCC-----------CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             CCcCCe-ec---CCCCCcCCEEECCCCcccee-----------ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            999995 54   89999999999999998662           2678899999999999765555  5889999999999


Q ss_pred             eecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccC
Q 002376          232 ASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS  311 (929)
Q Consensus       232 s~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~  311 (929)
                      ++|++++ +|   ...+++|+.|++++|++++.   .+..+++|+.|++++|++++ +|  ++.+++|+.|++++|++..
T Consensus       178 s~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          178 SFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            9999985 55   33477788888888887765   36777778888888887776 44  6666666666666666654


Q ss_pred             CCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCc
Q 002376          312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISG  391 (929)
Q Consensus       312 ~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  391 (929)
                      .+          +..+++|+.|++++|               +|+.|++++|.+.+.+|  ++.+++|+.|+|++|.+.+
T Consensus       248 ~~----------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~  300 (457)
T 3bz5_A          248 LD----------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY  300 (457)
T ss_dssp             CC----------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC
T ss_pred             cC----------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc
Confidence            32          223445555555443               23444555555544444  3444555555555555444


Q ss_pred             ccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCccc
Q 002376          392 EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILR  471 (929)
Q Consensus       392 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~  471 (929)
                      .+|.                           ...+|+.|++++|             ++|+.|++++|+|++ +      
T Consensus       301 ~l~~---------------------------~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~-l------  333 (457)
T 3bz5_A          301 LLDC---------------------------QAAGITELDLSQN-------------PKLVYLYLNNTELTE-L------  333 (457)
T ss_dssp             EEEC---------------------------TTCCCSCCCCTTC-------------TTCCEEECTTCCCSC-C------
T ss_pred             eecc---------------------------CCCcceEechhhc-------------ccCCEEECCCCcccc-c------
Confidence            4432                           2233444444433             345555555555553 1      


Q ss_pred             CCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCccc
Q 002376          472 PLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL  549 (929)
Q Consensus       472 ~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  549 (929)
                        +  ++.+++|+.||+++|++++        ++.|+.|++++|.++|.     ..+..|+.+++++|+++|.+|..+
T Consensus       334 --~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          334 --D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             --C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             --c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence              1  3445556666666665554        23455566666666654     233455666666666666666543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=3e-42  Score=365.58  Aligned_cols=223  Identities=26%  Similarity=0.329  Sum_probs=158.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||+||+|++..                   ..+.+.+|++++++++|||||++++++.+     ..
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~   86 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-----KD   86 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CC
Confidence            3689999999999999999997651                   23578999999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .+|+||||| +|+|.+++.+..        .+..||+.||+|||++   +|+||||||+|||+++++.+||+|||+|+..
T Consensus        87 ~~~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~  162 (275)
T 3hyh_A           87 EIIMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIM  162 (275)
T ss_dssp             EEEEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC---
T ss_pred             EEEEEEeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeec
Confidence            589999999 689999886433        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       ......+||+.|||||++.+..+ +.++||||+||++|++..+..++....  ..+++.. +..   ...
T Consensus       163 ~~~-------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~--~~~~~~~-i~~---~~~  229 (275)
T 3hyh_A          163 TDG-------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES--IPVLFKN-ISN---GVY  229 (275)
T ss_dssp             -------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHH-HHH---TCC
T ss_pred             CCC-------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCC--HHHHHHH-HHc---CCC
Confidence            321       12334689999999999998886 579999999988777665554443211  1111111 111   111


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    .++.++.-+++++.+|++.||++|||++|+++
T Consensus       230 ~----~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~  262 (275)
T 3hyh_A          230 T----LPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQ  262 (275)
T ss_dssp             C----CCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             C----CCCCCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            1    11122233344777999999999999999976

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=6.6e-42  Score=369.85  Aligned_cols=234  Identities=20%  Similarity=0.291  Sum_probs=161.3

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCC-------
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-------  716 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-------  716 (929)
                      ++|+..+.||+|+||+||+|++..                 ..+.+.+|+++|++++|||||++++++.+.+.       
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            468889999999999999997651                 23578899999999999999999999875432       


Q ss_pred             CCcceEEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEec
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                      ....++|+|||||++|+|.++++...           .++.||+.||+|||++   +||||||||+|||++.++.+||+|
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEcc
Confidence            12345799999999999999986432           2457999999999998   999999999999999999999999


Q ss_pred             cccccccccccCCCC------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc
Q 002376          786 FGLARFLLERVDNQS------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL  859 (929)
Q Consensus       786 fGla~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~  859 (929)
                      ||+|+.+........      .....+..+||+.|||||++.+..|+.++||||+||++|++..   ++   ...... .
T Consensus       162 FGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf---~~~~~~-~  234 (299)
T 4g31_A          162 FGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PF---STQMER-V  234 (299)
T ss_dssp             CCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CC---SSHHHH-H
T ss_pred             CccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CC---CCccHH-H
Confidence            999997754322111      1112244689999999999999999999999999998888642   11   111100 0


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ..+.......  .+....+..+.. .+++.+||+.||++|||+.|+++
T Consensus       235 -~~~~~~~~~~--~p~~~~~~~~~~-~~li~~~L~~dP~~Rps~~eil~  279 (299)
T 4g31_A          235 -RTLTDVRNLK--FPPLFTQKYPCE-YVMVQDMLSPSPMERPEAINIIE  279 (299)
T ss_dssp             -HHHHHHHTTC--CCHHHHHHCHHH-HHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             -HHHHHHhcCC--CCCCCcccCHHH-HHHHHHHcCCChhHCcCHHHHhc
Confidence             0011110000  011111111222 33778999999999999999986

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2e-38  Score=368.12  Aligned_cols=119  Identities=26%  Similarity=0.340  Sum_probs=52.1

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEE
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLN  174 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~  174 (929)
                      ++|+.|++++|.+. .+| .+..+++|++|+|++|.+++..|  +.++++|++|+|++|++++ +++  +.++++|++|+
T Consensus        46 ~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCCEEE
Confidence            34444444444443 222 24444444444444444443322  4444444444444444442 221  44444444444


Q ss_pred             ccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEee
Q 002376          175 FGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLA  232 (929)
Q Consensus       175 Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  232 (929)
                      |++|.+++.         + .+..+++|++|+|++|++++. + .+.++++|++|+++
T Consensus       119 L~~n~l~~~---------~-~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          119 LFNNQITDI---------D-PLKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG  164 (466)
T ss_dssp             CCSSCCCCC---------G-GGTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE
T ss_pred             CCCCCCCCC---------h-HHcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC
Confidence            444443221         0 134444555555555544432 1 24445555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3e-38  Score=366.56  Aligned_cols=345  Identities=30%  Similarity=0.414  Sum_probs=185.2

Q ss_pred             CCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCcc
Q 002376          117 NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDL  196 (929)
Q Consensus       117 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~  196 (929)
                      .+++|+.|++++|.++. +|. +..+++|++|||++|.+++ +++  +.++++|++|++++|.+.+..        +  +
T Consensus        44 ~l~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~--------~--~  108 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADIT--------P--L  108 (466)
T ss_dssp             HHHTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG--------G--G
T ss_pred             HhccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccCh--------h--h
Confidence            45678888888888874 553 7788888888888888874 443  788888888888888775421        1  6


Q ss_pred             CCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCccccccccc
Q 002376          197 SRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQ  276 (929)
Q Consensus       197 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~  276 (929)
                      +.+++|++|+|++|++++..+  +.++++|++|+|++|.+++ ++                          .+..+++|+
T Consensus       109 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--------------------------~~~~l~~L~  159 (466)
T 1o6v_A          109 ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS--------------------------ALSGLTSLQ  159 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG--------------------------GGTTCTTCS
T ss_pred             cCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch--------------------------hhccCCccc
Confidence            677888888888888876544  7778888888888887763 22                          133344444


Q ss_pred             EEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcccccc
Q 002376          277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS  356 (929)
Q Consensus       277 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~  356 (929)
                      .|+++ |.+.+..+  +.++++|+.|++++|.+...         ..+..+++|++|++++|++++..|  ++.+. +|+
T Consensus       160 ~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~  224 (466)
T 1o6v_A          160 QLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI---------SVLAKLTNLESLIATNNQISDITP--LGILT-NLD  224 (466)
T ss_dssp             EEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSSCCCCCGG--GGGCT-TCC
T ss_pred             EeecC-CcccCchh--hccCCCCCEEECcCCcCCCC---------hhhccCCCCCEEEecCCccccccc--ccccC-CCC
Confidence            44443 23332211  44444444444444443321         123445555555555555554333  33333 455


Q ss_pred             EEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcc
Q 002376          357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNE  436 (929)
Q Consensus       357 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  436 (929)
                      .|++++|++++.  ..+..+++|++|++++|.+++..|  +..+++|++|++++|++++..+  +..+++|+.|++++|+
T Consensus       225 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~  298 (466)
T 1o6v_A          225 ELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQ  298 (466)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSC
T ss_pred             EEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCc
Confidence            555555555432  234445555555555555554332  4445555555555555544322  4444555555555555


Q ss_pred             cccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccc
Q 002376          437 LTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQ  516 (929)
Q Consensus       437 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~  516 (929)
                      +++..+  +..+++|+.|++++|++++..        |  +..+++|+.|++++|++++.  ..+.++++|+.|++++|+
T Consensus       299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~--------~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~  364 (466)
T 1o6v_A          299 LEDISP--ISNLKNLTYLTLYFNNISDIS--------P--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQ  364 (466)
T ss_dssp             CSCCGG--GGGCTTCSEEECCSSCCSCCG--------G--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccCchh--hcCCCCCCEEECcCCcCCCch--------h--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCc
Confidence            543322  344444444444444444321        1  33344444444444444432  234444444444444444


Q ss_pred             ccccCCccccCCCCCCEEECCCCcCC
Q 002376          517 FSGPIPNIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       517 l~~~~p~~~~~l~~L~~L~Ls~N~l~  542 (929)
                      +++.+|  +..+++|+.|++++|+++
T Consensus       365 l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          365 ISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             CCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             cCccch--hhcCCCCCEEeccCCccc
Confidence            444333  344444444444444444

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=4.3e-42  Score=369.45  Aligned_cols=219  Identities=25%  Similarity=0.286  Sum_probs=161.3

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||+||+|+..                     .....+.+|++++++++|||||++++++.+     .
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~   98 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-----E   98 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----T
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----C
Confidence            47999999999999999988642                     113468899999999999999999999854     3


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..+|+|||||++|+|.+++++..        .++.||+.||+|||++   +||||||||+|||+++++.+||+|||+|+.
T Consensus        99 ~~~~ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A           99 GKLYLILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             TEEEEEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEeccccccee
Confidence            45899999999999999987433        3467999999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....      .......+||+.|||||++.+..|+.++||||+||++|++.++..++....  ..+++......    ..
T Consensus       176 ~~~~------~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~--~~~~~~~i~~~----~~  243 (304)
T 3ubd_A          176 SIDH------EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD--RKETMTMILKA----KL  243 (304)
T ss_dssp             -----------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHC----CC
T ss_pred             ccCC------CccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC--HHHHHHHHHcC----CC
Confidence            5321      112334689999999999999999999999999988877766555443222  11111111111    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .    .++.++.-+++++.+||+.||++|||+
T Consensus       244 ~----~p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          244 G----MPQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             C----CCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             C----CCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            1    111222334447779999999999985

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.9e-38  Score=368.21  Aligned_cols=346  Identities=18%  Similarity=0.183  Sum_probs=285.2

Q ss_pred             eEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccc
Q 002376          228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFN  307 (929)
Q Consensus       228 ~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  307 (929)
                      .++.++++++ .+|..+.   ++++.|++++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus        15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            4444555554 4444332   34556666666666666677777777888888888877777777888888888888888


Q ss_pred             cccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCC
Q 002376          308 KIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYN  387 (929)
Q Consensus       308 ~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  387 (929)
                      ++..++.       ..|.++++|++|+|++|++++..|..+..+. +|++|+|++|.+++..+..|.++++|++|+|++|
T Consensus        91 ~l~~~~~-------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           91 RLKLIPL-------GVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CCCSCCT-------TSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC
T ss_pred             cCCccCc-------ccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhhccCCCCCCEEECCCC
Confidence            7776543       3567788999999999999888888888877 7999999999999999999999999999999999


Q ss_pred             CCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCC
Q 002376          388 SISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPK  467 (929)
Q Consensus       388 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~  467 (929)
                      ++++..+..+..+++|+.|+|++|.+.+..+..|..+++|++|++++|.+.+.+|..+....+|+.|+|++|++++ +| 
T Consensus       163 ~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~-  240 (477)
T 2id5_A          163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VP-  240 (477)
T ss_dssp             CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CC-
T ss_pred             cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cC-
Confidence            9998777789999999999999999998888899999999999999999888888777777799999999999974 32 


Q ss_pred             CcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCc
Q 002376          468 GILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS  547 (929)
Q Consensus       468 ~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  547 (929)
                            +..+..+++|+.|||++|.+++..+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..+.
T Consensus       241 ------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          241 ------YLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             ------HHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             ------HHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh
Confidence                  35788899999999999999988888999999999999999999999999999999999999999999988778


Q ss_pred             ccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCCC
Q 002376          548 DLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       548 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      .|..+++|+.|+|++|++++..+....+.....+.+.++...|..|
T Consensus       315 ~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          315 VFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             GBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             HcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCc
Confidence            8899999999999999998765433333444456677777777544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-37  Score=357.89  Aligned_cols=315  Identities=19%  Similarity=0.201  Sum_probs=256.7

Q ss_pred             CCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCC
Q 002376           81 FGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVT  160 (929)
Q Consensus        81 ~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~  160 (929)
                      ++++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .++
T Consensus        21 ~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~   96 (477)
T 2id5_A           21 KRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP   96 (477)
T ss_dssp             CCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCC
T ss_pred             CCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccC
Confidence            3444 5676654  68999999999999988999999999999999999999988999999999999999999998 688


Q ss_pred             hhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcC
Q 002376          161 DDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI  240 (929)
Q Consensus       161 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  240 (929)
                      ...|.++++|++|+|++|++.+        +.|..|..+++|+.|+|++|++++..+..|.++++|++|+|++|+++ .+
T Consensus        97 ~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  167 (477)
T 2id5_A           97 LGVFTGLSNLTKLDISENKIVI--------LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI  167 (477)
T ss_dssp             TTSSTTCTTCCEEECTTSCCCE--------ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SC
T ss_pred             cccccCCCCCCEEECCCCcccc--------CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-cc
Confidence            8779999999999999998754        34566788999999999999999999999999999999999999998 45


Q ss_pred             CcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCcc
Q 002376          241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSF  320 (929)
Q Consensus       241 p~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~  320 (929)
                      |...+..+++|+.|++++|++++..+..|..+++|+.|++++|.+.+.+|..+.                          
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------------  221 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------------  221 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------------------------
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc--------------------------
Confidence            655555577777777777777776666777777777777777666555553322                          


Q ss_pred             ccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCC
Q 002376          321 ITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQL  400 (929)
Q Consensus       321 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  400 (929)
                           ...+|++|+|++|++++..+..+..+. +|+.|+|++|.|++..+..|.++++|++|+|++|++++..|..|..+
T Consensus       222 -----~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (477)
T 2id5_A          222 -----YGLNLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL  295 (477)
T ss_dssp             -----TTCCCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred             -----cCccccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence                 234677777777777733224555555 78888888888888878888888888888888888888888888888


Q ss_pred             CCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccc
Q 002376          401 QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE  440 (929)
Q Consensus       401 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  440 (929)
                      ++|++|+|++|+|++..+..|..+++|+.|+|++|.+...
T Consensus       296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~  335 (477)
T 2id5_A          296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD  335 (477)
T ss_dssp             TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred             ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence            8888888888888887777888888888899988888753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.3e-36  Score=342.43  Aligned_cols=349  Identities=17%  Similarity=0.178  Sum_probs=232.9

Q ss_pred             CCCCCCCCCCCC-CcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCC
Q 002376           49 LSYWNPSSSPCT-WPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNIS  127 (929)
Q Consensus        49 l~~w~~~~~~c~-w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  127 (929)
                      +++|.++.+||. |.+..|.....++     ............-..++++++|++++|.++...+..|..+++|++|+|+
T Consensus         3 ~~~~~~~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~   77 (390)
T 3o6n_A            3 VKPRQPEYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN   77 (390)
T ss_dssp             ----CCEECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred             cCCCCCccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence            578988777774 4444443222122     2222222223334457899999999999986555567899999999999


Q ss_pred             CCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEe
Q 002376          128 FNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDL  207 (929)
Q Consensus       128 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~L  207 (929)
                      +|.+++..|..|..+++|++|+|++|+++ .+++..|+++++|++|+|++|++..        +.+..|..+++|++|+|
T Consensus        78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~L~~L~L  148 (390)
T 3o6n_A           78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPKLTTLSM  148 (390)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEEC
T ss_pred             CCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCc--------CCHHHhcCCCCCcEEEC
Confidence            99999888889999999999999999998 4666669999999999999998752        23344688999999999


Q ss_pred             ecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcC
Q 002376          208 TINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG  287 (929)
Q Consensus       208 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  287 (929)
                      ++|++++..|..|.++++|++|+|++|++++ ++   ...+++|+.+++++|.+++.     ....+|+.|++++|.++.
T Consensus       149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINV  219 (390)
T ss_dssp             CSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCE
T ss_pred             CCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeeccccccccc-----CCCCcceEEECCCCeeee
Confidence            9999999889999999999999999999984 33   22366777777777766542     233456666666666653


Q ss_pred             CccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCcccc
Q 002376          288 TLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYG  367 (929)
Q Consensus       288 ~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~  367 (929)
                      . |..                                 ..++|++|+|++|++++.  ..+..++ +|++|+|++|.+++
T Consensus       220 ~-~~~---------------------------------~~~~L~~L~l~~n~l~~~--~~l~~l~-~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          220 V-RGP---------------------------------VNVELTILKLQHNNLTDT--AWLLNYP-GLVEVDLSYNELEK  262 (390)
T ss_dssp             E-ECC---------------------------------CCSSCCEEECCSSCCCCC--GGGGGCT-TCSEEECCSSCCCE
T ss_pred             c-ccc---------------------------------ccccccEEECCCCCCccc--HHHcCCC-CccEEECCCCcCCC
Confidence            3 211                                 124555555555555532  3444444 56666666666666


Q ss_pred             ccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccc
Q 002376          368 KIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGN  447 (929)
Q Consensus       368 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  447 (929)
                      ..|..|..+++|++|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+++.. |  +..
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~  337 (390)
T 3o6n_A          263 IMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LST  337 (390)
T ss_dssp             EESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCT
T ss_pred             cChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chh
Confidence            666666666666666666666653 3445556666666666666665 3455556666666666666666543 2  455


Q ss_pred             ccccceecccCCcCC
Q 002376          448 FQSLLSIDLSNNRIN  462 (929)
Q Consensus       448 l~~L~~L~Ls~N~l~  462 (929)
                      +++|+.|++++|+++
T Consensus       338 ~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          338 HHTLKNLTLSHNDWD  352 (390)
T ss_dssp             TCCCSEEECCSSCEE
T ss_pred             hccCCEEEcCCCCcc
Confidence            666666666666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.6e-36  Score=359.84  Aligned_cols=350  Identities=17%  Similarity=0.198  Sum_probs=259.8

Q ss_pred             CCCCCCCCCCCCCCC----CcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCC
Q 002376           46 SSPLSYWNPSSSPCT----WPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL  121 (929)
Q Consensus        46 ~~~l~~w~~~~~~c~----w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L  121 (929)
                      ...+++|.++.+||.    |.++.|+.   ++   +......  ..+..-..+++++.|++++|.+....+..|.++++|
T Consensus         6 ~~~l~~~~~~~~C~~~~~~~~c~~~~~---~i---~~~~~~~--~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L   77 (597)
T 3oja_B            6 RYNVKPRQPEYKCIDSNLQYDCVFYDV---HI---DMQTQDV--YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV   77 (597)
T ss_dssp             -----CCCSEECCCCC--CCSEEECSC---EE---CSSCCCC--EESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCC
T ss_pred             cccccCCCCCCcCcccCcCceeEecCc---ee---ccccccc--ccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCC
Confidence            456789998888774    66666542   11   1111111  122223357899999999999987666678899999


Q ss_pred             cEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCc
Q 002376          122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLEN  201 (929)
Q Consensus       122 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~  201 (929)
                      ++|+|++|.|++..|..|+.+++|++|+|++|.|++ +++..|+++++|++|+|++|.+++        +.+..|+.+++
T Consensus        78 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~--------l~~~~~~~l~~  148 (597)
T 3oja_B           78 ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSS--------LPRGIFHNTPK  148 (597)
T ss_dssp             SEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTT
T ss_pred             cEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCC--------CCHHHhccCCC
Confidence            999999999998888899999999999999999985 666668999999999999998753        23345688999


Q ss_pred             ccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEecc
Q 002376          202 LKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMT  281 (929)
Q Consensus       202 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls  281 (929)
                      |++|+|++|++++..|..|.++++|++|+|++|.+++ ++   ...+++|+.+++++|.+++.     ....+|+.|+++
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls  219 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDAS  219 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECC
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCccccc-----cCCchhheeecc
Confidence            9999999999999999999999999999999999884 33   22256666666666665532     233455556666


Q ss_pred             CccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEec
Q 002376          282 HNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLG  361 (929)
Q Consensus       282 ~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls  361 (929)
                      +|.++...+.                                  ..++|+.|+|++|.+++  +..+..++ +|+.|+|+
T Consensus       220 ~n~l~~~~~~----------------------------------~~~~L~~L~L~~n~l~~--~~~l~~l~-~L~~L~Ls  262 (597)
T 3oja_B          220 HNSINVVRGP----------------------------------VNVELTILKLQHNNLTD--TAWLLNYP-GLVEVDLS  262 (597)
T ss_dssp             SSCCCEEECS----------------------------------CCSCCCEEECCSSCCCC--CGGGGGCT-TCSEEECC
T ss_pred             CCcccccccc----------------------------------cCCCCCEEECCCCCCCC--ChhhccCC-CCCEEECC
Confidence            6555432211                                  12467777777777775  35666666 68888888


Q ss_pred             CCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCccccccc
Q 002376          362 GNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEI  441 (929)
Q Consensus       362 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  441 (929)
                      +|.+++.+|..|+.+++|++|+|++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.+++. 
T Consensus       263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-  339 (597)
T 3oja_B          263 YNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-  339 (597)
T ss_dssp             SSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-
T ss_pred             CCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-
Confidence            888888888888888888888888888875 5666777888888888888887 5677778888888888888888754 


Q ss_pred             CcccccccccceecccCCcCCC
Q 002376          442 PISFGNFQSLLSIDLSNNRING  463 (929)
Q Consensus       442 p~~~~~l~~L~~L~Ls~N~l~g  463 (929)
                      |  +..+++|+.|++++|.+++
T Consensus       340 ~--~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          340 K--LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             C--CCTTCCCSEEECCSSCEEH
T ss_pred             C--hhhcCCCCEEEeeCCCCCC
Confidence            2  5667888888888888875

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-38  Score=356.12  Aligned_cols=182  Identities=24%  Similarity=0.353  Sum_probs=146.3

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++..                  ..+.+.+|+++|++++|||||++++++..... .....
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            579999999999999999997651                  23568899999999999999999999865432 23356


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+|||||+ |+|.+++...+        .++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+|+.+.
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~  209 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMARGLC  209 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCC-
T ss_pred             EEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceeeecc
Confidence            899999995 78999887443        3467999999999998   99999999999999999999999999998764


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ....  .........+||+.|||||++.+. .++.++||||+||++|++.++..++
T Consensus       210 ~~~~--~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF  263 (398)
T 4b99_A          210 TSPA--EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF  263 (398)
T ss_dssp             --------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred             cCcc--ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCC
Confidence            2211  111223456899999999998876 4699999999999888876665444

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.8e-38  Score=352.54  Aligned_cols=183  Identities=22%  Similarity=0.240  Sum_probs=145.7

Q ss_pred             HhhCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCc
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +..+.|+..+.||+|+||+||+|+.+                 ....++.+|+++++.+ +|||||++++++.+     .
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~-----~   92 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSHPIRIAAELQCLTVAGGQDNVMGVKYCFRK-----N   92 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSCHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-----T
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccCHHHHHHHHHHHHHhcCCCCCceEEEEEEE-----C
Confidence            44678999999999999999998642                 2345788999999998 69999999999854     3


Q ss_pred             ceEEEEEEecCCCCccccccc-----cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEeccccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLL  793 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~-----~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfGla~~~~  793 (929)
                      .++|+|||||++|+|.++++.     .+.+..|++.||+|||+.   +||||||||+|||++.+ +.+||+|||+|+...
T Consensus        93 ~~~~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~  169 (361)
T 4f9c_A           93 DHVVIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTH  169 (361)
T ss_dssp             TEEEEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECT
T ss_pred             CEEEEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcccC
Confidence            458999999999999998863     345578999999999998   99999999999999876 799999999998653


Q ss_pred             cccCCC----------------------CCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQ----------------------SSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~----------------------~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ......                      .........+||++|||||++.+.. |+.++||||+||++|++.++..++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf  247 (361)
T 4f9c_A          170 DTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF  247 (361)
T ss_dssp             TCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             CccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence            211100                      0001123457999999999998764 899999999999888876665544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.9e-36  Score=331.85  Aligned_cols=255  Identities=33%  Similarity=0.562  Sum_probs=242.6

Q ss_pred             CCCCEEEccCCcccc--ccCchhhhccccccEEEecC-CccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCC
Q 002376          328 THLNYLALDGNQFEG--KIPESIGNFSNELSKLYLGG-NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ  404 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  404 (929)
                      .+++.|+|++|++++  .+|..+..+. +|++|+|++ |.+.+.+|..|+++++|++|+|++|++++.+|..|..+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            578999999999999  8999999987 899999995 999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccc-ccceecccCCcCCCCCCCCcccCCchhhhcccCc
Q 002376          405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQ-SLLSIDLSNNRINGNIPKGILRPLPEEISRLENV  483 (929)
Q Consensus       405 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L  483 (929)
                      +|+|++|++++.+|..+..+++|++|+|++|++++.+|..|..++ +|+.|++++|++++.+        |..+..++ |
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--------~~~~~~l~-L  199 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--------PPTFANLN-L  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--------CGGGGGCC-C
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccC--------ChHHhCCc-c
Confidence            999999999999999999999999999999999999999999998 9999999999998766        67778887 9


Q ss_pred             cEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCC
Q 002376          484 VTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       484 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      +.|+|++|++++.+|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence            9999999999999999999999999999999999988776 889999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCcccccCCCCCcCCC
Q 002376          564 NLEGVVPSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       564 ~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      +++|.+|....+++++.+++.+||++|+.|
T Consensus       279 ~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred             cccccCCCCccccccChHHhcCCCCccCCC
Confidence            999999999889999999999999999876

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=1e-37  Score=363.72  Aligned_cols=224  Identities=22%  Similarity=0.263  Sum_probs=166.5

Q ss_pred             CCCCCceeecccCceeEEeccccCc-------------------HHHHHHH---HHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAE---CETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E---~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..++||+|+||+||+|+...+                   ...+.+|   +.+++.++|||||++++++.+     
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-----  263 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-----  263 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-----
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE-----
Confidence            5799999999999999999986521                   1223334   566777899999999999954     


Q ss_pred             cceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...+|+|||||+||+|.+++...        +.++.||+.||+|||+.   +||||||||+|||++.+|.+||+|||+|+
T Consensus       264 ~~~lylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~  340 (689)
T 3v5w_A          264 PDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLAC  340 (689)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             CCEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceee
Confidence            34599999999999999998743        24478999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      .+...        .....+||+.|||||++.+ ..|+.++||||+||++|++..+..++..... ...++.    .....
T Consensus       341 ~~~~~--------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~----~~i~~  408 (689)
T 3v5w_A          341 DFSKK--------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEID----RMTLT  408 (689)
T ss_dssp             ECSSC--------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHH----HHHHH
T ss_pred             ecCCC--------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHH----HhhcC
Confidence            76321        1234689999999999975 5799999999999888877665555532211 111111    11111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ....    .++.++.-+++++.+|++.||++|++     ++||.+
T Consensus       409 ~~~~----~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~  449 (689)
T 3v5w_A          409 MAVE----LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  449 (689)
T ss_dssp             CCCC----CCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred             CCCC----CCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence            1111    11223333445777999999999998     677753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=9.8e-36  Score=328.19  Aligned_cols=275  Identities=20%  Similarity=0.230  Sum_probs=213.7

Q ss_pred             CCcCChhhHHHHHHHHhhcCCCCCCCCCCCC----CCCCCCCCCcceeeCC--------CCCcEEEEEcCCCCCccccCC
Q 002376           22 ASVGINTDKEALMSFKSQISQESPSSPLSYW----NPSSSPCTWPGVICNN--------FGNRVIGLNLSSFGLEGTISP   89 (929)
Q Consensus        22 ~~~~~~~~~~aLl~~k~~~~~~~~~~~l~~w----~~~~~~c~w~gv~c~~--------~~~~v~~l~l~~~~l~g~i~~   89 (929)
                      .+.+..+|++||++||+++..+ +.+.+++|    +...++|.|.|+.|+.        ...+|+.|+|++++++ .+|+
T Consensus        21 ~~~~~~~~~~aLl~~k~~~~~~-~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~   98 (328)
T 4fcg_A           21 GSTALRPYHDVLSQWQRHYNAD-RNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD   98 (328)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHC-CTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred             ccccCchHHHHHHHHHHhccCC-chhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence            3556689999999999998655 66778899    4567899999999953        2347888888888887 7888


Q ss_pred             CCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhh------
Q 002376           90 HIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQ------  163 (929)
Q Consensus        90 ~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~------  163 (929)
                      .++++++|++|+|++|.++ .+|..|+++++|++|+|++|+++ .+|..|+++++|++|+|++|++.+.+|...      
T Consensus        99 ~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~  176 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDAS  176 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-C
T ss_pred             hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccch
Confidence            8888888888888888888 88888888888888888888888 778888888888888888888777777652      


Q ss_pred             --hccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCC
Q 002376          164 --LRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIP  241 (929)
Q Consensus       164 --~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip  241 (929)
                        |.++++|++|+|++|+++ .+        |..|+.+++|++|+|++|++++ +|..|.++++|++|+|++|++.+.+|
T Consensus       177 ~~~~~l~~L~~L~L~~n~l~-~l--------p~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          177 GEHQGLVNLQSLRLEWTGIR-SL--------PASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             CCEEESTTCCEEEEEEECCC-CC--------CGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             hhhccCCCCCEEECcCCCcC-cc--------hHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhH
Confidence              234788888888888774 33        3445667788888888888875 45567788888888888888777777


Q ss_pred             cccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccC
Q 002376          242 YDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS  311 (929)
Q Consensus       242 ~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~  311 (929)
                      ..+.. +++|+.|++++|++.+.+|..+.++++|+.|+|++|++.+.+|..++++++|+.+++..|.+..
T Consensus       247 ~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          247 PIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred             HHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence            66554 7788888888888888888778888888888888888877888777777777777777665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=6.7e-35  Score=330.43  Aligned_cols=335  Identities=19%  Similarity=0.207  Sum_probs=176.7

Q ss_pred             CCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEE
Q 002376          199 LENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQII  278 (929)
Q Consensus       199 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L  278 (929)
                      +.++++|++++|.++...+..|.++++|++|+|++|+++ .++...+..+++|++|++++|++++..|..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            566777777777776555555666777777777777766 3333333345666666666666665555556666666666


Q ss_pred             eccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEE
Q 002376          279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL  358 (929)
Q Consensus       279 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L  358 (929)
                      +|++|.++...+..|.++++|++|++++|++.....       ..+.++++|++|++++|++++. +  +..++ +|+.|
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~-~L~~L  191 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-------DTFQATTSLQNLQLSSNRLTHV-D--LSLIP-SLFHA  191 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTSSCTTCCEEECCSSCCSBC-C--GGGCT-TCSEE
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-------hhccCCCCCCEEECCCCcCCcc-c--ccccc-cccee
Confidence            666666654433344555555555555555544322       2344455555555555555432 1  22222 44555


Q ss_pred             EecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc
Q 002376          359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT  438 (929)
Q Consensus       359 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  438 (929)
                      ++++|.+++.     ...++|++|++++|.++.. |..  ..+                        +|+.|++++|+++
T Consensus       192 ~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~------------------------~L~~L~l~~n~l~  239 (390)
T 3o6n_A          192 NVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNV------------------------ELTILKLQHNNLT  239 (390)
T ss_dssp             ECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCS------------------------SCCEEECCSSCCC
T ss_pred             eccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccc------------------------cccEEECCCCCCc
Confidence            5555544432     1122444444444444422 211  123                        4444444444444


Q ss_pred             cccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccccc
Q 002376          439 GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS  518 (929)
Q Consensus       439 ~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  518 (929)
                      +.  ..+.++++|+.|+|++|++++..        |..+..+++|+.|+|++|++++ +|..+..+++|++|+|++|+++
T Consensus       240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          240 DT--AWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             CC--GGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             cc--HHHcCCCCccEEECCCCcCCCcC--------hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce
Confidence            32  23444444444455444444322        3344444455555555555543 3344455566666666666665


Q ss_pred             ccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCCC
Q 002376          519 GPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       519 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                       .+|..+..+++|++|+|++|++++. |  +..+++|+.|++++|++++.... ..+..+....+.+++..|..+
T Consensus       309 -~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          309 -HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             -ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence             3444555666666677777666643 2  55566777777777777664211 234555556667777777543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=3.5e-37  Score=362.93  Aligned_cols=228  Identities=21%  Similarity=0.260  Sum_probs=172.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||+||+|++..                ..+.+.+|+++|+.++|||||++++++.+     ...+|
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-----~~~~~  230 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNEMV  230 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-----SSEEE
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEE
Confidence            3689999999999999999987651                24568899999999999999999999954     34589


Q ss_pred             EEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC--CceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE--MTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~--~~~ki~DfGla~~~  792 (929)
                      +|||||++|+|.+++...         +.++.||+.||+|||++   +|+||||||+|||++.+  +.+||+|||+|+.+
T Consensus       231 iv~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~  307 (573)
T 3uto_A          231 MIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  307 (573)
T ss_dssp             EEEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEEC
T ss_pred             EEEeecCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEc
Confidence            999999999999988533         23467999999999998   99999999999999854  89999999999976


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       ......+||+.|||||++.+..|+.++||||+||++|++..+..++.....  .+.+    .........
T Consensus       308 ~~~-------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~--~~~~----~~i~~~~~~  374 (573)
T 3uto_A          308 DPK-------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETL----RNVKSCDWN  374 (573)
T ss_dssp             CTT-------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHH----HHHHTTCCC
T ss_pred             cCC-------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH--HHHH----HHHHhCCCC
Confidence            321       223456899999999999999999999999999887776554444322211  1111    111111111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....+..+++-+++++.+||+.||++|||++|+++
T Consensus       375 ~~~~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~  410 (573)
T 3uto_A          375 MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  410 (573)
T ss_dssp             CCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111111122333344777999999999999999976

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=5.2e-35  Score=349.78  Aligned_cols=335  Identities=19%  Similarity=0.216  Sum_probs=189.8

Q ss_pred             CCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEE
Q 002376          199 LENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQII  278 (929)
Q Consensus       199 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L  278 (929)
                      +.+++.|++++|.+..+.+..|.++++|++|+|++|.|++ ++...+..+++|+.|++++|.+++..|..|.++++|++|
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            5677777777777776666666777777777777777763 332223335666666666666666555555666666666


Q ss_pred             eccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEE
Q 002376          279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL  358 (929)
Q Consensus       279 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L  358 (929)
                      +|++|.|++..+..|+++++|++|++++|.+                               ++..|..+..+. +|++|
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------------------------~~~~~~~~~~l~-~L~~L  176 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------------------------ERIEDDTFQATT-SLQNL  176 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------------------------CBCCTTTTTTCT-TCCEE
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------------------------CCCChhhhhcCC-cCcEE
Confidence            6666666544444445555555555555554                               444444444433 34444


Q ss_pred             EecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc
Q 002376          359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT  438 (929)
Q Consensus       359 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  438 (929)
                      +|++|.+++..   ++.+++|+.|++++|.+++     +...++|+.|++++|.++...+. +  .++|+.|+|++|.++
T Consensus       177 ~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~  245 (597)
T 3oja_B          177 QLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLT  245 (597)
T ss_dssp             ECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCC
T ss_pred             ECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCC
Confidence            44444444321   2334444455555554442     12233455555555554422111 1  134555555555555


Q ss_pred             cccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccccc
Q 002376          439 GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS  518 (929)
Q Consensus       439 ~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  518 (929)
                      +  +..+..+++|+.|+|++|.+++.+        |..++.+++|+.|+|++|++++ +|..+..+++|+.|+|++|.++
T Consensus       246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          246 D--TAWLLNYPGLVEVDLSYNELEKIM--------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             C--CGGGGGCTTCSEEECCSSCCCEEE--------SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC
T ss_pred             C--ChhhccCCCCCEEECCCCccCCCC--------HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC
Confidence            3  234555555555555555555433        4445555555666666665554 3445555667777777777776


Q ss_pred             ccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcCCC
Q 002376          519 GPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       519 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                       .+|..+..+++|++|+|++|++++. |  +..+++|+.|++++|++++..+. ..+..+....+.+++..|+.+
T Consensus       315 -~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          315 -HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             -CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTT
T ss_pred             -ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcc
Confidence             4555666777777777777777654 2  55667788888888888765322 235556666677888888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-33  Score=314.28  Aligned_cols=307  Identities=25%  Similarity=0.373  Sum_probs=203.9

Q ss_pred             cCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccc
Q 002376          196 LSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNI  275 (929)
Q Consensus       196 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L  275 (929)
                      +..+++|+.|++++|.+... + .+..+++|++|+|++|++++ +|.  +..+++|++|++++|+++..  ..+.++++|
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             chhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            34567777777777777643 3 36677777777777777762 332  23345555555555554432  134444444


Q ss_pred             cEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccc
Q 002376          276 QIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNEL  355 (929)
Q Consensus       276 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L  355 (929)
                      ++|++++|.+++..                                 .+..+++|++|++++|.....++ .+..+. +|
T Consensus       113 ~~L~l~~n~i~~~~---------------------------------~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~-~L  157 (347)
T 4fmz_A          113 RELYLNEDNISDIS---------------------------------PLANLTKMYSLNLGANHNLSDLS-PLSNMT-GL  157 (347)
T ss_dssp             SEEECTTSCCCCCG---------------------------------GGTTCTTCCEEECTTCTTCCCCG-GGTTCT-TC
T ss_pred             CEEECcCCcccCch---------------------------------hhccCCceeEEECCCCCCccccc-chhhCC-CC
Confidence            44444444444321                                 24455556666666664443332 244444 56


Q ss_pred             cEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCc
Q 002376          356 SKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN  435 (929)
Q Consensus       356 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  435 (929)
                      ++|++++|.+.+..+  +..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|++|++++|
T Consensus       158 ~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN  231 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             cEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCC
Confidence            666666666664433  6667777777777777765433  6677777777777777775544  677777888888888


Q ss_pred             ccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccc
Q 002376          436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYN  515 (929)
Q Consensus       436 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N  515 (929)
                      ++++..+  +..+++|+.|++++|++++ +         +.+..+++|++|++++|++++.  ..+..+++|++|++++|
T Consensus       232 ~l~~~~~--~~~l~~L~~L~l~~n~l~~-~---------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          232 KITDLSP--LANLSQLTWLEIGTNQISD-I---------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCC-C---------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSS
T ss_pred             ccCCCcc--hhcCCCCCEEECCCCccCC-C---------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCC
Confidence            7775443  7777888888888887764 1         3466777888888888888764  45788888888888888


Q ss_pred             cccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCc
Q 002376          516 QFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       516 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      ++++..|..++.+++|++|+|++|++++..|  +..+++|++|++++|.++
T Consensus       298 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          298 QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             cCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            8888888888888889999999998887665  788888899999888875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=100.00  E-value=9.7e-36  Score=327.98  Aligned_cols=254  Identities=26%  Similarity=0.412  Sum_probs=185.2

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCccccceeeecccC
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHRNLVKLITSCSSL  714 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~  714 (929)
                      ++++.++..++++|+..+.||+|+||.||+|+..               ...+.+.+|++++++++||||+++++++...
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            4555667778999999999999999999998754               2346789999999999999999999998543


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                           ...++||||+++|+|.+++....            .++.|++.||+|||+.   +|+||||||+||++++++.+|
T Consensus       108 -----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~k  179 (321)
T 2qkw_B          108 -----NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPK  179 (321)
T ss_dssp             -----TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEE
T ss_pred             -----CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEE
Confidence                 34799999999999999986432            2367899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccCh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDP  861 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~  861 (929)
                      |+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++.....++..... ........
T Consensus       180 l~Dfg~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~  255 (321)
T 2qkw_B          180 ITDFGISKKGTELD----QTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEW  255 (321)
T ss_dssp             ECCCTTCEECSSSS----CCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHH
T ss_pred             Eeeccccccccccc----ccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHH
Confidence            99999998643211    11122345699999999999989999999999999888776555444322111 10000000


Q ss_pred             HHHHh----hcc--cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          862 ELRQL----MTS--NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       862 ~l~~~----~~~--~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      .....    ...  ...............+.+++.+||+.||++|||++|+++.|+.+.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~  315 (321)
T 2qkw_B          256 AVESHNNGQLEQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR  315 (321)
T ss_dssp             THHHHTTTCCCSSSSSSCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             hhhccccccHHHhcChhhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence            00000    000  0000001111222333348889999999999999999999998865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.6e-33  Score=311.04  Aligned_cols=319  Identities=23%  Similarity=0.331  Sum_probs=221.1

Q ss_pred             cccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCce
Q 002376          149 DLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVH  228 (929)
Q Consensus       149 ~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  228 (929)
                      .+..+.+++.   ..+..+++|+.|++++|.+..         ++ .+..+++|++|+|++|++++..+  |.++++|++
T Consensus        28 ~~~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~---------~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~   92 (347)
T 4fmz_A           28 VLQKASVTDV---VTQEELESITKLVVAGEKVAS---------IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTN   92 (347)
T ss_dssp             HHTCSCTTSE---ECHHHHTTCSEEECCSSCCCC---------CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             hccccccCCc---ccchhcccccEEEEeCCcccc---------ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCE
Confidence            3444555422   236788999999999998743         12 36789999999999999997655  999999999


Q ss_pred             EEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecccccc
Q 002376          229 LRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNK  308 (929)
Q Consensus       229 L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  308 (929)
                      |+|++|.+++ +|  .+..+++|++|++++|++++..+  +..+++|+.|++++|.....++. +..+++|++|++++|.
T Consensus        93 L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~  166 (347)
T 4fmz_A           93 LYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK  166 (347)
T ss_dssp             EECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             EEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence            9999999984 54  35569999999999999987654  88999999999999966544442 5555555555555555


Q ss_pred             ccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCC
Q 002376          309 IVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS  388 (929)
Q Consensus       309 i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  388 (929)
                      +....         .+..+++                         |++|++++|.+.+..+  +..+++|++|++++|.
T Consensus       167 ~~~~~---------~~~~l~~-------------------------L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  210 (347)
T 4fmz_A          167 VKDVT---------PIANLTD-------------------------LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ  210 (347)
T ss_dssp             CCCCG---------GGGGCTT-------------------------CSEEECTTSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred             cCCch---------hhccCCC-------------------------CCEEEccCCccccccc--ccCCCccceeecccCC
Confidence            43321         1333444                         5555555555543322  5556666666666666


Q ss_pred             CCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCC
Q 002376          389 ISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKG  468 (929)
Q Consensus       389 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~  468 (929)
                      +++..+  +..+++|++|++++|++++..+  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++.    
T Consensus       211 l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~----  280 (347)
T 4fmz_A          211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI----  280 (347)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC----
T ss_pred             CCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC----
Confidence            664433  5666666666666666665433  66667777777777776643  3466677777777777776531    


Q ss_pred             cccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCC
Q 002376          469 ILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       469 ~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  542 (929)
                            ..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|  +..+++|+.||+++|.|+
T Consensus       281 ------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          281 ------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             ------GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             ------hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence                  235667777777787777777777777888888888888888877666  777888888888888775

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=323.34  Aligned_cols=245  Identities=20%  Similarity=0.316  Sum_probs=178.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|...+.||+|+||.||+|++..                ..+.|.+|++++++++||||+++++++.+.     ...+
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~~   83 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD-----KRLN   83 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEEE
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC-----CeeE
Confidence            3578889999999999999987641                246788999999999999999999999643     3489


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  160 (310)
T 3s95_A           84 FITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVD  160 (310)
T ss_dssp             EEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC-
T ss_pred             EEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceeccc
Confidence            9999999999999987422         2367999999999998   999999999999999999999999999987643


Q ss_pred             ccCCCC--------CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          795 RVDNQS--------SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       795 ~~~~~~--------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      ......        ........+||+.|+|||++.+..++.++||||+|++++++.....++......... ........
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~-~~~~~~~~  239 (310)
T 3s95_A          161 EKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMD-FGLNVRGF  239 (310)
T ss_dssp             -------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTT-SSBCHHHH
T ss_pred             ccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHH-Hhhhhhcc
Confidence            211110        001112457999999999999999999999999998777754433322221111000 01111111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      .....  ....++.+.    +++.+||+.||++|||++|+++.|+++++....
T Consensus       240 ~~~~~--~~~~~~~l~----~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~  286 (310)
T 3s95_A          240 LDRYC--PPNCPPSFF----PITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG  286 (310)
T ss_dssp             HHHTC--CTTCCTTHH----HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccccC--CCCCCHHHH----HHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence            11000  111112222    377799999999999999999999999887653

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=4.4e-36  Score=330.77  Aligned_cols=251  Identities=20%  Similarity=0.229  Sum_probs=179.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|+..++||+|+||.||+|++.+             ....+.+|+.++++++|||||++++++..... .....++||
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~-~~~~~~lv~  101 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTS-VDVDLWLIT  101 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECS-SSEEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEECCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCCchhhcceeccCCC-CCceEEEEE
Confidence            4688899999999999999997652             13356678889999999999999999876432 234579999


Q ss_pred             EecCCCCccccccccc-------cccccHHHHHHHhhhC-------CCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          727 EFLSNGSLGDWIHGER-------KNELDITSALDYLHND-------CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~-------~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ||+++|+|.++++...       .++.|++.||+|||+.       +.++|+||||||+|||++.++.+||+|||+|+..
T Consensus       102 e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~  181 (322)
T 3soc_A          102 AFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF  181 (322)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEE
T ss_pred             ecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccccc
Confidence            9999999999987432       3467999999999985       1348999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCC-----CCCCCCCCCCCcCCCCCcchhHHhhhcCCc----hhh----hcc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGE-----RPSTAGDVPTSESFAGEFNIVKWVESNLPE----NVL----QVL  859 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~----~~~----~~~  859 (929)
                      .....    ........||+.|+|||++.+.     .++.++||||+|++++++.....++....+    ...    ...
T Consensus       182 ~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~  257 (322)
T 3soc_A          182 EAGKS----AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHP  257 (322)
T ss_dssp             CTTSC----CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSC
T ss_pred             ccccC----ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCC
Confidence            43211    1122335799999999999873     466788999999888887665444432111    000    000


Q ss_pred             Ch-HHHHhhccc-c----hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          860 DP-ELRQLMTSN-E----SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       860 ~~-~l~~~~~~~-~----~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .. .+....... .    ........+..++. +++.+||+.||++|||++||+++|+++.+.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~li~~cl~~dP~~Rps~~ell~~L~~l~~~  319 (322)
T 3soc_A          258 SLEDMQEVVVHKKKRPVLRDYWQKHAGMAMLC-ETIEECWDHDAEARLSAGCVGERITQMQRL  319 (322)
T ss_dssp             CHHHHHHHHTTSCCCCCCCGGGGSSHHHHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhcccCCCCccccccccchHHHHH-HHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence            00 111100000 0    00001112222333 488899999999999999999999998764

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=2e-35  Score=321.56  Aligned_cols=228  Identities=23%  Similarity=0.248  Sum_probs=172.4

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+|.+.                ...+.+.+|+.++++++||||+++++++...     ...+
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~~   93 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-----DELW   93 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC-----CEEE
Confidence            458999999999999999999653                2356788999999999999999999998653     3489


Q ss_pred             EEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      +||||+++|+|.+++...       ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++......
T Consensus        94 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~  170 (297)
T 3fxz_A           94 VVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ  170 (297)
T ss_dssp             EEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred             EEEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence            999999999999998643       23467899999999998   99999999999999999999999999998653221


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+........     ......
T Consensus       171 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~~~~~-----~~~~~~  237 (297)
T 3fxz_A          171 ------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATN-----GTPELQ  237 (297)
T ss_dssp             ------CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHH-----CSCCCS
T ss_pred             ------cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC-----CCCCCC
Confidence                  122345799999999999999999999999999877776554444322211  0000000000     000111


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .++.+...+++++.+||+.||++|||++|+++
T Consensus       238 ~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  269 (297)
T 3fxz_A          238 NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ  269 (297)
T ss_dssp             CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             CccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence            11222333444777999999999999999975

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=100.00  E-value=1.8e-35  Score=322.58  Aligned_cols=248  Identities=21%  Similarity=0.262  Sum_probs=173.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHHc--cCCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRN--VRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~--l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|+..+.||+|+||.||+|++.+           ..+.+.+|.+++..  ++||||+++++++.... ......++||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~-~~~~~~~lv~   85 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDEKSWFRETELYNTVMLRHENILGFIASDMTSR-HSSTQLWLIT   85 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEE-TTEEEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccccchhhHHHHHHHHHhhccCcCeeeEEEeecccc-CCCceeEEeh
Confidence            4678999999999999999997652           34567778777776  79999999999976533 2345689999


Q ss_pred             EecCCCCccccccccc-------cccccHHHHHHHhh--------hCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          727 EFLSNGSLGDWIHGER-------KNELDITSALDYLH--------NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH--------~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ||+++|+|.++++...       .++.|++.||+|||        +.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        86 e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~  162 (301)
T 3q4u_A           86 HYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIADLGLAVM  162 (301)
T ss_dssp             CCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             hhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEeeCCCeee
Confidence            9999999999986432       34679999999999        65   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCC------CCCCCCCCCCCcCCCCCcchhHHhhh-----cCCch--hh-h
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGE------RPSTAGDVPTSESFAGEFNIVKWVES-----NLPEN--VL-Q  857 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DV~s~g~~~~~~~~~~~~~~-----~~~~~--~~-~  857 (929)
                      .......  .........||+.|+|||++.+.      .++.++||||+|++++++.....+.+     ..|..  .. +
T Consensus       163 ~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~  240 (301)
T 3q4u_A          163 HSQSTNQ--LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPND  240 (301)
T ss_dssp             EETTTTE--EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred             ccccccc--ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCC
Confidence            5432111  01112334799999999999877      45579999999988777654411111     11110  00 0


Q ss_pred             ccChHHHHhhcccc---h-hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          858 VLDPELRQLMTSNE---S-QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       858 ~~~~~l~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ..............   . ......+.....+.+++.+||+.||++||||+||+++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i  300 (301)
T 3q4u_A          241 PSFEDMRKVVCVDQQRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI  300 (301)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred             cchhhhhHHHhccCCCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence            00011111110000   0 00001112233344488899999999999999999999976

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=100.00  E-value=6.7e-35  Score=322.02  Aligned_cols=245  Identities=31%  Similarity=0.470  Sum_probs=187.7

Q ss_pred             CCCCChHHHHHhhCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeec
Q 002376          648 HPKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSC  711 (929)
Q Consensus       648 ~~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~  711 (929)
                      ...++++++..++++|+..+.||+|+||.||+|+...                ....|.+|++++++++||||++++++|
T Consensus        17 ~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~   96 (326)
T 3uim_A           17 LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC   96 (326)
T ss_dssp             CEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEE
T ss_pred             cceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEE
Confidence            3468899999999999999999999999999987641                123689999999999999999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM  779 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~  779 (929)
                      ...+     ..++||||+++|+|.++++...            .++.|++.||+|||+.+.++|+||||||+||++++++
T Consensus        97 ~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~  171 (326)
T 3uim_A           97 MTPT-----ERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEF  171 (326)
T ss_dssp             CCSS-----CCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTC
T ss_pred             ecCC-----ceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCC
Confidence            6543     3699999999999999987432            2367899999999998777899999999999999999


Q ss_pred             ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcC--------
Q 002376          780 TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNL--------  851 (929)
Q Consensus       780 ~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~--------  851 (929)
                      .+||+|||+++.....     .........||+.|+|||++.+..++.++||||+|++++++.....++...        
T Consensus       172 ~~kl~Dfg~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  246 (326)
T 3uim_A          172 EAVVGDFGLAKLMDYK-----DTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDV  246 (326)
T ss_dssp             CEEECCCSSCEECCSS-----SSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCS
T ss_pred             CEEeccCccccccCcc-----cccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccch
Confidence            9999999999865321     112233456999999999998889999999999998777755443332100        


Q ss_pred             ----------Cc-hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          852 ----------PE-NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       852 ----------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                                .. ......+.....         ....+....+.+ ++.+||+.||++|||++||++.|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~-li~~cl~~dP~~Rps~~ell~~L~~  308 (326)
T 3uim_A          247 MLLDWVKGLLKEKKLEALVDVDLQG---------NYKDEEVEQLIQ-VALLCTQSSPMERPKMSEVVRMLEG  308 (326)
T ss_dssp             BHHHHHTTTTSSCCSTTSSCTTCTT---------SCCHHHHHHHHH-HHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred             hHHHHHHHHhhchhhhhhcChhhcc---------ccCHHHHHHHHH-HHHHHhCcCCccCCCHHHHHHHhcC
Confidence                      00 001111111100         001122334444 8889999999999999999999986

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=7.2e-35  Score=318.81  Aligned_cols=244  Identities=26%  Similarity=0.369  Sum_probs=170.8

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      +++....++|+..+.||+|+||.||+|+..+                ..++|.+|++++++++||||+++++++...+  
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--  107 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPP--  107 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTT--
T ss_pred             ccccCChhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECC--
Confidence            3334445688999999999999999987552                2357889999999999999999999995433  


Q ss_pred             CcceEEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCC--EEecCCCCCCeeecCCCceEEe
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVP--VVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~--iiHrDlk~~NILl~~~~~~ki~  784 (929)
                         ..++||||+++|+|.++++...           .++.|++.||+|||+.   +  |+||||||+||+++.++.+||+
T Consensus       108 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~  181 (309)
T 3p86_A          108 ---NLSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVC  181 (309)
T ss_dssp             ---CCEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEEC
T ss_pred             ---ceEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEEC
Confidence               3799999999999999987432           2367899999999998   7  9999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |||+++.....      ........||+.|+|||++.+..++.++||||+|++++++.....++.....  .+... .+.
T Consensus       182 Dfg~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~--~~~~~-~~~  252 (309)
T 3p86_A          182 DFGLSRLKAST------FLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNP--AQVVA-AVG  252 (309)
T ss_dssp             CCC-----------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCH--HHHHH-HHH
T ss_pred             CCCCCcccccc------ccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHH-HHH
Confidence            99999854321      1122345799999999999999999999999999877776555444433221  11000 000


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      . ........    ..+...+.+++.+||+.||++|||++|+++.|+++.+...+
T Consensus       253 ~-~~~~~~~~----~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~p  302 (309)
T 3p86_A          253 F-KCKRLEIP----RNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAVP  302 (309)
T ss_dssp             H-SCCCCCCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC----
T ss_pred             h-cCCCCCCC----ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCCC
Confidence            0 00000111    11122233477799999999999999999999998766443

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=100.00  E-value=6.6e-35  Score=319.13  Aligned_cols=250  Identities=28%  Similarity=0.367  Sum_probs=185.4

Q ss_pred             CCCCChHHHHHhhCCCCCc------eeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCcc
Q 002376          648 HPKISYDELRRATGNFSHE------NLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRN  703 (929)
Q Consensus       648 ~~~~~~~~l~~~~~~~~~~------~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpn  703 (929)
                      ...|+++++.+++++|+..      +.||+|+||.||+|+..+                  ..+.|.+|++++++++|||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            4568999999999999988      899999999999987541                  2467899999999999999


Q ss_pred             ccceeeecccCCCCCcceEEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCC
Q 002376          704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGN  772 (929)
Q Consensus       704 iv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~N  772 (929)
                      |+++++++...+     ..++||||+++|+|.+++....           .++.|++.||+|||+.   +|+||||||+|
T Consensus        92 i~~~~~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~N  163 (307)
T 2nru_A           92 LVELLGFSSDGD-----DLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSAN  163 (307)
T ss_dssp             BCCEEEEECSSS-----SCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGG
T ss_pred             eEEEEEEEecCC-----ceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHH
Confidence            999999986533     3799999999999999886321           2367899999999998   99999999999


Q ss_pred             eeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCC
Q 002376          773 ILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLP  852 (929)
Q Consensus       773 ILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~  852 (929)
                      |++++++.+||+|||+++......    .........||+.|+|||++.+ .++.++||||+|++++++.....++....
T Consensus       164 ili~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~  238 (307)
T 2nru_A          164 ILLDEAFTAKISDFGLARASEKFA----QTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHR  238 (307)
T ss_dssp             EEECTTCCEEECCCTTCEECCSCS----SCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTB
T ss_pred             EEEcCCCcEEEeeccccccccccc----ccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCc
Confidence            999999999999999998653211    1112234579999999998865 58999999999987777655443332221


Q ss_pred             chhhhccCh----------HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          853 ENVLQVLDP----------ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       853 ~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      .  .+....          .+........  . .......+.+.+++.+||+.||++|||++|+++.|+++.+
T Consensus       239 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~  306 (307)
T 2nru_A          239 E--PQLLLDIKEEIEDEEKTIEDYIDKKM--N-DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA  306 (307)
T ss_dssp             S--SSBTTHHHHHHHTTSCCHHHHSCSSC--S-CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred             c--hHHHHHHHHHhhhhhhhhhhhccccc--c-ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence            1  011111          0111111000  0 0011122333348889999999999999999999998754

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=2.3e-34  Score=323.04  Aligned_cols=238  Identities=19%  Similarity=0.302  Sum_probs=176.9

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|+..+.||+|+||.||+|++.                        ...+++.+|+++++++ +|||||+++++|...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            467888999999999999988631                        1235788999999999 899999999999653


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +     ..|+||||+++|+|.++++..+                        .++.||+.||+|||+.   +|+||||||
T Consensus       160 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp  231 (370)
T 2psq_A          160 G-----PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA  231 (370)
T ss_dssp             S-----SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred             C-----CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence            3     3799999999999999987432                        1356899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +|||++.++.+||+|||+++.......    ........||+.|||||++.+..++.++||||+|+++|++.+ ...++.
T Consensus       232 ~NIll~~~~~~kl~DFG~a~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~  307 (370)
T 2psq_A          232 RNVLVTENNVMKIADFGLARDINNIDY----YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  307 (370)
T ss_dssp             GGEEECTTCCEEECCCSSCEETTCCCT----TCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             hhEEECCCCCEEEccccCCcccCcccc----eecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCC
Confidence            999999999999999999986532211    111233467889999999999999999999999988777544 333332


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ..+.  .++.. .+.....  .......   ...+ .+++.+||+.||++||+++|+++.|+++.....
T Consensus       308 ~~~~--~~~~~-~~~~~~~--~~~~~~~---~~~l-~~li~~~l~~dP~~Rpt~~ell~~L~~il~~~~  367 (370)
T 2psq_A          308 GIPV--EELFK-LLKEGHR--MDKPANC---TNEL-YMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTT  367 (370)
T ss_dssp             TCCG--GGHHH-HHHTTCC--CCCCTTS---CHHH-HHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             CCCH--HHHHH-HHhcCCC--CCCCCCC---CHHH-HHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence            2221  11110 1111000  0011111   1223 337779999999999999999999999887654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=8e-35  Score=320.36  Aligned_cols=240  Identities=22%  Similarity=0.229  Sum_probs=178.5

Q ss_pred             CCCCChHHHHHhhCC----------CCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCC
Q 002376          648 HPKISYDELRRATGN----------FSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRH  701 (929)
Q Consensus       648 ~~~~~~~~l~~~~~~----------~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~H  701 (929)
                      .+.+++++++.+++.          |+..+.||+|+||.||+|+..                ...+.+.+|+.++++++|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred             CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCC
Confidence            356889999988865          677789999999999998754                234678899999999999


Q ss_pred             ccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCee
Q 002376          702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNIL  774 (929)
Q Consensus       702 pniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NIL  774 (929)
                      |||+++++++...     ...++||||+++|+|.+++...+       .++.|++.||+|||+.   +|+||||||+||+
T Consensus       102 ~niv~~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIl  173 (321)
T 2c30_A          102 FNVVEMYKSYLVG-----EELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSIL  173 (321)
T ss_dssp             TTBCCEEEEEEET-----TEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEE
T ss_pred             CCcceEEEEEEEC-----CEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEE
Confidence            9999999998653     34899999999999999886432       3467899999999998   9999999999999


Q ss_pred             ecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch
Q 002376          775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN  854 (929)
Q Consensus       775 l~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~  854 (929)
                      ++.++.+||+|||+++......      .......||+.|+|||++.+..++.++||||+|++++++.....++..... 
T Consensus       174 l~~~~~~kl~Dfg~~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~-  246 (321)
T 2c30_A          174 LTLDGRVKLSDFGFCAQISKDV------PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSP-  246 (321)
T ss_dssp             ECTTCCEEECCCTTCEECCSSS------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-
T ss_pred             ECCCCcEEEeeeeeeeecccCc------cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-
Confidence            9999999999999998653221      112345799999999999999999999999999877776544433322111 


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       .+.. ..+........    .....+...+++++.+||+.||++|||++|+++
T Consensus       247 -~~~~-~~~~~~~~~~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  294 (321)
T 2c30_A          247 -VQAM-KRLRDSPPPKL----KNSHKVSPVLRDFLERMLVRDPQERATAQELLD  294 (321)
T ss_dssp             -HHHH-HHHHHSSCCCC----TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             -HHHH-HHHhcCCCCCc----CccccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence             1111 01111110000    011112223334777999999999999999986

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.9e-32  Score=303.14  Aligned_cols=288  Identities=18%  Similarity=0.257  Sum_probs=184.6

Q ss_pred             CCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecc
Q 002376          225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI  304 (929)
Q Consensus       225 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  304 (929)
                      +++.+++++|.++ .+|..+.   ++++.|++++|++++..|..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            4555556555554 4554432   34555555555555555566666777777777777777665655555555555555


Q ss_pred             ccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEe
Q 002376          305 GFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDL  384 (929)
Q Consensus       305 ~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  384 (929)
                      ++|++.                                .+|..++   .+|++|++++|++++..+..|.++++|++|++
T Consensus       110 ~~n~l~--------------------------------~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l  154 (332)
T 2ft3_A          110 SKNHLV--------------------------------EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM  154 (332)
T ss_dssp             CSSCCC--------------------------------SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred             CCCcCC--------------------------------ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence            444443                                3333332   24666666666666555555666666666666


Q ss_pred             eCCCCC--cccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCC
Q 002376          385 SYNSIS--GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       385 s~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  462 (929)
                      ++|.++  +..|..+..+ +|++|++++|++++ +|..+.  ++|++|++++|++++..+..|.++++|+.|+|++|+++
T Consensus       155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~  230 (332)
T 2ft3_A          155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR  230 (332)
T ss_dssp             CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred             CCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            666664  2455556666 66777777777664 344333  56777777777777766677777777777777777776


Q ss_pred             CCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCC------CCCCEEEC
Q 002376          463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAEL------KGLEVLDL  536 (929)
Q Consensus       463 g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L  536 (929)
                      +..        |..+..+++|+.|+|++|+++ .+|..+..+++|++|++++|+|++..+..|...      ..|+.|++
T Consensus       231 ~~~--------~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l  301 (332)
T 2ft3_A          231 MIE--------NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL  301 (332)
T ss_dssp             CCC--------TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEEC
T ss_pred             cCC--------hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEe
Confidence            532        445667777777777777777 667777778888888888888877766666543      56888888


Q ss_pred             CCCcCC--CcCCcccccCCCCCeEeCCCCc
Q 002376          537 SSNKLS--GSIPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       537 s~N~l~--~~~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      ++|.+.  +..|..|..+++|+.+++++|+
T Consensus       302 ~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          302 FNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecCcccccccCcccccccchhhhhhccccc
Confidence            888877  5667778888888888888774

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=100.00  E-value=1.9e-35  Score=321.53  Aligned_cols=247  Identities=24%  Similarity=0.325  Sum_probs=173.0

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||.||+|++.                    ...+.|.+|++++++++||||+++++++...+   .
T Consensus         9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~   85 (295)
T 3ugc_A            9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG---R   85 (295)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHH---H
T ss_pred             HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC---C
Confidence            357888999999999999998731                    12357889999999999999999999986422   2


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        86 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~  162 (295)
T 3ugc_A           86 RNLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK  162 (295)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC
T ss_pred             CceEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCcccc
Confidence            34799999999999999986433         2367899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc---------Ch
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL---------DP  861 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~  861 (929)
                      .......   .........||..|+|||++.+..++.++||||+|++++++.....++...+....+..         ..
T Consensus       163 ~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (295)
T 3ugc_A          163 VLPQDKE---FFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVF  239 (295)
T ss_dssp             ----------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHH
T ss_pred             cccCCcc---eeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHH
Confidence            7643211   11112234578889999999999999999999999887776553322221111110000         00


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .+........  +...+...+.-+.+++.+||+.||++|||++|++++|+++++.+
T Consensus       240 ~~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l  293 (295)
T 3ugc_A          240 HLIELLKNNG--RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNM  293 (295)
T ss_dssp             HHHHHHHTTC--CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhccC--cCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence            1111111000  00001111222333777999999999999999999999998754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=4.9e-35  Score=327.70  Aligned_cols=249  Identities=18%  Similarity=0.260  Sum_probs=183.0

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccc
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVK  706 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~  706 (929)
                      .+...++....++|+..+.||+|+||.||+|++.                      ...+.+.+|+++++++ +|||||+
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            3556677777889999999999999999999621                      1235689999999999 7999999


Q ss_pred             eeeecccCCCCCcceEEEEEEecCCCCcccccccccc-------------------------------------------
Q 002376          707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK-------------------------------------------  743 (929)
Q Consensus       707 l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~-------------------------------------------  743 (929)
                      ++++|.+.+    ...++||||+++|+|.++++..+.                                           
T Consensus        91 ~~~~~~~~~----~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (359)
T 3vhe_A           91 LLGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSG  166 (359)
T ss_dssp             EEEEECSTT----SCCEEEEECCTTEEHHHHHHTTTTSBCSCC-------------------------------------
T ss_pred             eeeeeecCC----CceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccc
Confidence            999986533    237999999999999999864321                                           


Q ss_pred             -------------------------------ccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          744 -------------------------------NELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       744 -------------------------------~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                                                     ++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~  243 (359)
T 3vhe_A          167 FVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDI  243 (359)
T ss_dssp             -----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCT
T ss_pred             cccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeee
Confidence                                           246899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...    ..........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+.+...+.....  .
T Consensus       244 ~~~----~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~~~~~~~~~~~~~--~  315 (359)
T 3vhe_A          244 YKD----PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI--DEEFCRRLKEGTR--M  315 (359)
T ss_dssp             TSC----TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC--SHHHHHHHHHTCC--C
T ss_pred             ccc----ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccch--hHHHHHHHHcCCC--C
Confidence            321    11122334578999999999999999999999999987777543 3333222111  1111111111100  0


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .......   .++. +++.+||+.||++||||+|+++.|+++.+..
T Consensus       316 ~~~~~~~---~~l~-~li~~~l~~dP~~Rps~~ell~~L~~~~~~~  357 (359)
T 3vhe_A          316 RAPDYTT---PEMY-QTMLDCWHGEPSQRPTFSELVEHLGNLLQAN  357 (359)
T ss_dssp             CCCTTCC---HHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCC---HHHH-HHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence            0001111   2233 3777999999999999999999999988754

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=100.00  E-value=7.7e-35  Score=327.04  Aligned_cols=238  Identities=22%  Similarity=0.300  Sum_probs=165.4

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|+..                    ...++|.+|++++++++||||+++++++...+     
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~-----  119 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSK-----  119 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS-----
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCC-----
Confidence            47889999999999999998753                    12357899999999999999999999996533     


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.++++...         .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       120 ~~~lv~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  196 (373)
T 2qol_A          120 PVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRV  196 (373)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-----
T ss_pred             ceEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccc
Confidence            3799999999999999987432         2367899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ......   .........+|+.|+|||++.+..++.++||||+|++++++.. ...++.....  .++. ..+.....  
T Consensus       197 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~--~~~~-~~i~~~~~--  268 (373)
T 2qol_A          197 LEDDPE---AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSN--QDVI-KAVDEGYR--  268 (373)
T ss_dssp             --------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCH--HHHH-HHHHTTEE--
T ss_pred             cccCCc---cceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHH-HHHHcCCC--
Confidence            643211   1111222346789999999999999999999999987777543 3333322211  1111 01111000  


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .....   .+...+. +++.+||+.||++||+|+||+++|+++.+...
T Consensus       269 ~~~~~---~~~~~l~-~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~~  312 (373)
T 2qol_A          269 LPPPM---DCPAALY-QLMLDCWQKDRNNRPKFEQIVSILDKLIRNPG  312 (373)
T ss_dssp             CCCCT---TCBHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHCGG
T ss_pred             CCCCc---cccHHHH-HHHHHHhCcChhhCcCHHHHHHHHHHHHhCcc
Confidence            00011   1112233 37779999999999999999999999987643

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=6.6e-32  Score=298.51  Aligned_cols=289  Identities=19%  Similarity=0.242  Sum_probs=157.1

Q ss_pred             CCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecc
Q 002376          225 SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNI  304 (929)
Q Consensus       225 ~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  304 (929)
                      +++.++++++.++ .+|..+.   ++++.|++++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            4555666655555 4554332   35556666666666666666777777777777777777766766766666666666


Q ss_pred             ccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCcccc--ccCCCCCCCCcccEE
Q 002376          305 GFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYG--KIPASIGRLRSLTLL  382 (929)
Q Consensus       305 ~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L  382 (929)
                      ++|++..++..        +  .++|++|++++|++++..+..+..+. +|+.|++++|.+..  ..+..|.++++|++|
T Consensus       108 s~n~l~~l~~~--------~--~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          108 SKNQLKELPEK--------M--PKTLQELRVHENEITKVRKSVFNGLN-QMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             CSSCCSBCCSS--------C--CTTCCEEECCSSCCCBBCHHHHTTCT-TCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCcCCccChh--------h--cccccEEECCCCcccccCHhHhcCCc-cccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            66666543321        1  14556666666666544444444444 45555555555532  444455555555555


Q ss_pred             EeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCC
Q 002376          383 DLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       383 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  462 (929)
                      ++++|.++. +|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+              
T Consensus       177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--------------  239 (330)
T 1xku_A          177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--------------  239 (330)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS--------------
T ss_pred             ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCC--------------
Confidence            555555542 333222  444555555555444444444444444555554444444444444444              


Q ss_pred             CCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccC------CCCCCEEEC
Q 002376          463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAE------LKGLEVLDL  536 (929)
Q Consensus       463 g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~L  536 (929)
                                        ++|++|+|++|+++ .+|..+..+++|++|++++|+|++..+..|..      ...|+.|++
T Consensus       240 ------------------~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l  300 (330)
T 1xku_A          240 ------------------PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  300 (330)
T ss_dssp             ------------------TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             ------------------CCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence                              44555555555554 44445555555555555555555544444432      256667777


Q ss_pred             CCCcCCC--cCCcccccCCCCCeEeCCCCc
Q 002376          537 SSNKLSG--SIPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       537 s~N~l~~--~~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      ++|.+..  ..|..|..+..++.++|++|+
T Consensus       301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ecCcccccccCccccccccceeEEEecccC
Confidence            7776653  445666777777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=3.6e-32  Score=300.87  Aligned_cols=252  Identities=25%  Similarity=0.281  Sum_probs=142.9

Q ss_pred             CccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccc
Q 002376          194 SDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLT  273 (929)
Q Consensus       194 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~  273 (929)
                      ..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|..++   ++|++|++++|++++..+..|.+++
T Consensus        72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~  147 (332)
T 2ft3_A           72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLR  147 (332)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCS
T ss_pred             hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCc
Confidence            34455555666666666666555666666666666666666665 4554433   4555555555555555455566666


Q ss_pred             cccEEeccCccCc--CCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhc
Q 002376          274 NIQIIRMTHNLLE--GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF  351 (929)
Q Consensus       274 ~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  351 (929)
                      +|+.|++++|.++  +..|..|..+ +|+.|++++|++..                                +|..+.  
T Consensus       148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~--------------------------------l~~~~~--  192 (332)
T 2ft3_A          148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--------------------------------IPKDLP--  192 (332)
T ss_dssp             SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--------------------------------CCSSSC--
T ss_pred             cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--------------------------------cCcccc--
Confidence            6667777666664  2444444444 44444444444433                                333322  


Q ss_pred             cccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceec
Q 002376          352 SNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID  431 (929)
Q Consensus       352 ~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  431 (929)
                       .+|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|+
T Consensus       193 -~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~  270 (332)
T 2ft3_A          193 -ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY  270 (332)
T ss_dssp             -SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred             -CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence             24566666666666555566666666666666666666555556666666666666666665 4555566666666666


Q ss_pred             ccCcccccccCccccc------ccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCC
Q 002376          432 LSGNELTGEIPISFGN------FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS  492 (929)
Q Consensus       432 Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~  492 (929)
                      +++|++++..+..|..      ..+|+.|++++|.+...      ...|..+..+++|+.++|++|+
T Consensus       271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~------~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW------EVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG------GSCGGGGTTBCCSTTEEC----
T ss_pred             CCCCCCCccChhHccccccccccccccceEeecCccccc------ccCcccccccchhhhhhccccc
Confidence            6666666555555543      24566677777766410      1124556666777777777664

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-34  Score=316.95  Aligned_cols=238  Identities=25%  Similarity=0.328  Sum_probs=171.9

Q ss_pred             CCCCCceeecccCceeEEecccc------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ++|+..+.||+|+||.||++++.            ...+.|.+|++++++++||||+++++++.+       ..++||||
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-------~~~lv~e~   80 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESESERKAFIVELRQLSRVNHPNIVKLYGACLN-------PVCLVMEY   80 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTTHHHHHHHHHHHHHHCCCTTBCCEEEBCTT-------TTEEEEEC
T ss_pred             hHeeeeeEeecCCCceEEEEEECCeeEEEEEecChhHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-------CcEEEEEc
Confidence            46788899999999999998765            235679999999999999999999999852       15999999


Q ss_pred             cCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc-eEEecccccccccccc
Q 002376          729 LSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT-AKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~-~ki~DfGla~~~~~~~  796 (929)
                      +++|+|.++++...           .++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++..... 
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-  159 (307)
T 2eva_A           81 AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-  159 (307)
T ss_dssp             CTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC--------
T ss_pred             CCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-
Confidence            99999999987432           22468999999999943348999999999999998886 799999999754211 


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                              .....||+.|+|||++.+..++.++||||+|++++++.....++........++.. ....  .......  
T Consensus       160 --------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~-~~~~--~~~~~~~--  226 (307)
T 2eva_A          160 --------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMW-AVHN--GTRPPLI--  226 (307)
T ss_dssp             -------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHH-HHHT--TCCCCCB--
T ss_pred             --------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHH-HHhc--CCCCCcc--
Confidence                    12346899999999999999999999999998877765554443322211100000 0000  0000001  


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                        ..++..+++++.+||+.||++|||++|+++.|+++.+.++...
T Consensus       227 --~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~~  269 (307)
T 2eva_A          227 --KNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGAD  269 (307)
T ss_dssp             --TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCTT
T ss_pred             --cccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCCC
Confidence              1112223347779999999999999999999999987765433

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=100.00  E-value=1.3e-34  Score=324.83  Aligned_cols=256  Identities=15%  Similarity=0.136  Sum_probs=177.1

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-----------------cHHH---------------HHHHHHHHHccCCccccc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKS---------------FIAECETLRNVRHRNLVK  706 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~---------------~~~E~~~l~~l~Hpniv~  706 (929)
                      ..++|+..+.||+|+||.||+|.+..                 ....               +..|+..++.++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            35689999999999999999996531                 1112               334555666778999999


Q ss_pred             eeeecccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-
Q 002376          707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-  776 (929)
Q Consensus       707 l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-  776 (929)
                      +++++.... .+..+.++||||+ +|+|.+++....         .++.||+.||+|||+.   +|+||||||+|||++ 
T Consensus       113 ~~~~~~~~~-~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~~  187 (364)
T 3op5_A          113 YWGSGLHDK-NGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLNY  187 (364)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEES
T ss_pred             EEeeeeecc-CCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEec
Confidence            999987643 2345689999999 999999986431         3467999999999998   999999999999999 


Q ss_pred             -CCCceEEeccccccccccccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-
Q 002376          777 -EEMTAKVGDFGLARFLLERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-  853 (929)
Q Consensus       777 -~~~~~ki~DfGla~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-  853 (929)
                       .++.+||+|||+|+.+........ ........+||+.|||||++.+..++.++||||+|++++++.....++..... 
T Consensus       188 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~  267 (364)
T 3op5_A          188 KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKD  267 (364)
T ss_dssp             SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC
T ss_pred             CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccC
Confidence             889999999999987653322111 11122345699999999999999999999999999887776655555442111 


Q ss_pred             -hhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          854 -NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       854 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                       .......................... .+.-+.+++.+||+.||++||+++++++.|+++.+.....
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~~~  334 (364)
T 3op5_A          268 PKYVRDSKIRYRENIASLMDKCFPAAN-APGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIGSK  334 (364)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHSCTTC-CCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhhhHHHHHHHhccccc-CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence             11000000000000000000000000 1122333777999999999999999999999998875433

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=314.38  Aligned_cols=236  Identities=22%  Similarity=0.265  Sum_probs=172.4

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|++.                    ...+.|.+|++++++++||||+++++++...     .
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~  123 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG-----R  123 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG-----G
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----C
Confidence            46778899999999999998763                    1245789999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       124 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          124 LAMIVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             CCEEEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEE
T ss_pred             ccEEEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccc
Confidence            4799999999999999986332         2367899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ......   .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .++. ..+....  .
T Consensus       201 ~~~~~~---~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~-~~~~~~~--~  272 (325)
T 3kul_A          201 LEDDPD---AAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTN--RDVI-SSVEEGY--R  272 (325)
T ss_dssp             CC-------CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCH--HHHH-HHHHTTC--C
T ss_pred             cccCcc---ceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCH--HHHH-HHHHcCC--C
Confidence            643211   1112233456889999999998899999999999987776543 3333222211  1111 0111100  0


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ......    ....+.+++.+||+.||++|||++|++++|+++.+.
T Consensus       273 ~~~~~~----~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~  314 (325)
T 3kul_A          273 LPAPMG----CPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRS  314 (325)
T ss_dssp             CCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CCCCCC----cCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhC
Confidence            001111    122233377799999999999999999999998764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=100.00  E-value=1.3e-34  Score=319.47  Aligned_cols=234  Identities=21%  Similarity=0.234  Sum_probs=171.8

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||+||+|++..                     ..+.+.+|+.++++++||||++++++|..      
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   86 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG------   86 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB------
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC------
Confidence            478889999999999999987531                     12456789999999999999999999842      


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++
T Consensus        87 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~  163 (325)
T 3kex_A           87 SSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVAD  163 (325)
T ss_dssp             SSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGG
T ss_pred             CccEEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCccc
Confidence            23799999999999999986432         2357899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .+.....    ........||++|+|||++.+..++.++||||+|++++++.+ ...++.....       ..+......
T Consensus       164 ~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~-------~~~~~~~~~  232 (325)
T 3kex_A          164 LLPPDDK----QLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRL-------AEVPDLLEK  232 (325)
T ss_dssp             GSCCCTT----CCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCT-------THHHHHHHT
T ss_pred             ccCcccc----cccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCH-------HHHHHHHHc
Confidence            7643211    112234568889999999999999999999999987777544 3333322211       111111110


Q ss_pred             cc--hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          870 NE--SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       870 ~~--~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ..  ......+.   .+. +++.+||+.||++||+++|+++.|+++.+...
T Consensus       233 ~~~~~~~~~~~~---~~~-~li~~~l~~dp~~Rps~~el~~~l~~~~~~~~  279 (325)
T 3kex_A          233 GERLAQPQICTI---DVY-MVMVKCWMIDENIRPTFKELANEFTRMARDPP  279 (325)
T ss_dssp             TCBCCCCTTBCT---TTT-HHHHHHTCSCTTTSCCHHHHHHHHHHHTTSHH
T ss_pred             CCCCCCCCcCcH---HHH-HHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence            00  00001111   122 27779999999999999999999999876543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.7e-34  Score=318.46  Aligned_cols=228  Identities=21%  Similarity=0.238  Sum_probs=170.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .+.|+..+.||+|+||.||+|+...                      ..+.+.+|+.++++++||||+++++++.+    
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~----   86 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN----   86 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC----
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe----
Confidence            4578999999999999999987541                      24678999999999999999999999854    


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEec
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGD  785 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~D  785 (929)
                       ....++||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+||++++++    .+||+|
T Consensus        87 -~~~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~D  162 (361)
T 2yab_A           87 -RTDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLID  162 (361)
T ss_dssp             -SSEEEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             -CCEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEe
Confidence             345899999999999999986433        3367899999999998   999999999999998877    799999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      ||+++.....       ......+||+.|+|||++.+..++.++||||+|+++|++..+..++.....  .+.+. .+. 
T Consensus       163 FG~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~--~~~~~-~i~-  231 (361)
T 2yab_A          163 FGLAHEIEDG-------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLA-NIT-  231 (361)
T ss_dssp             CSSCEECCTT-------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHH-HHH-
T ss_pred             cCCceEcCCC-------CccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH--HHHHH-HHH-
Confidence            9999875321       112345799999999999999999999999999877765544433322111  11111 111 


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ..........+..++..+++++.+|++.||++|||+.|+++
T Consensus       232 --~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~  272 (361)
T 2yab_A          232 --AVSYDFDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALR  272 (361)
T ss_dssp             --TTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             --hcCCCCCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence              11111111111222333445777999999999999999984

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=1.2e-31  Score=296.38  Aligned_cols=291  Identities=24%  Similarity=0.334  Sum_probs=148.7

Q ss_pred             CCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCC
Q 002376          120 RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRL  199 (929)
Q Consensus       120 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l  199 (929)
                      +|+.++++++.++ .+|..+.  ++|++|+|++|+|+ .+++..|.++++|++|+|++|+                    
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~--------------------   87 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNK--------------------   87 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSC--------------------
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCc--------------------
Confidence            5666666666666 4454443  45666666666665 3444335555555555555554                    


Q ss_pred             CcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEe
Q 002376          200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIR  279 (929)
Q Consensus       200 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~  279 (929)
                                  +++..|..|.++++|++|+|++|+++ .+|..++   ++|++|++++|++++..+..|.++++|+.|+
T Consensus        88 ------------l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           88 ------------ISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVE  151 (330)
T ss_dssp             ------------CCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred             ------------CCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEE
Confidence                        44444444445555555555555544 3343332   3444444444444444444555556666666


Q ss_pred             ccCccCcC--CccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccE
Q 002376          280 MTHNLLEG--TLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSK  357 (929)
Q Consensus       280 Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~  357 (929)
                      +++|.++.  ..+..|.++++                               |++|++++|+++ .+|..+.   .+|++
T Consensus       152 l~~n~l~~~~~~~~~~~~l~~-------------------------------L~~L~l~~n~l~-~l~~~~~---~~L~~  196 (330)
T 1xku_A          152 LGTNPLKSSGIENGAFQGMKK-------------------------------LSYIRIADTNIT-TIPQGLP---PSLTE  196 (330)
T ss_dssp             CCSSCCCGGGBCTTGGGGCTT-------------------------------CCEEECCSSCCC-SCCSSCC---TTCSE
T ss_pred             CCCCcCCccCcChhhccCCCC-------------------------------cCEEECCCCccc-cCCcccc---ccCCE
Confidence            66665542  33333434444                               444444444443 2333222   24555


Q ss_pred             EEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCccc
Q 002376          358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNEL  437 (929)
Q Consensus       358 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  437 (929)
                      |++++|++++..|..|.++++|++|+|++|++++..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|++
T Consensus       197 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          197 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             EECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            555555555555555555555555555555555554555555555555555555555 4455555555666666666666


Q ss_pred             ccccCccccc------ccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCC
Q 002376          438 TGEIPISFGN------FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNS  492 (929)
Q Consensus       438 ~~~~p~~~~~------l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~  492 (929)
                      ++..+..|..      ..+|+.|++++|.+...      ...|..+..+.+++.+||++|+
T Consensus       276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~------~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW------EIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG------GSCGGGGTTCCCGGGEEC----
T ss_pred             CccChhhcCCcccccccccccceEeecCccccc------ccCccccccccceeEEEecccC
Confidence            5544444432      24566666666665421      1124556666667777777664

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.98  E-value=2.9e-34  Score=316.23  Aligned_cols=225  Identities=23%  Similarity=0.299  Sum_probs=169.2

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ..++|+..+.||+|+||.||+|++..                  ..+.+.+|+++++.++||||+++++++..     ..
T Consensus        13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-----~~   87 (328)
T 3fe3_A           13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET-----EK   87 (328)
T ss_dssp             EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred             ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CC
Confidence            35689999999999999999987631                  23568899999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  164 (328)
T 3fe3_A           88 TLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEF  164 (328)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGG
T ss_pred             EEEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceec
Confidence            5899999999999999886432        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCC-CCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPS-TAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       ......+||+.|+|||++.+..++ .++||||+|++++++..+..++....  ..+........    ..
T Consensus       165 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~--~~~~~~~i~~~----~~  231 (328)
T 3fe3_A          165 TVG-------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN--LKELRERVLRG----KY  231 (328)
T ss_dssp             SSS-------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHC----CC
T ss_pred             CCC-------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC--HHHHHHHHHhC----CC
Confidence            321       123345799999999999988875 79999999987776654443332211  11111111111    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....    ++.-+.+++.+|++.||++|||++|+++
T Consensus       232 ~~p~~----~s~~~~~li~~~L~~dP~~R~t~~eil~  264 (328)
T 3fe3_A          232 RIPFY----MSTDCENLLKRFLVLNPIKRGTLEQIMK  264 (328)
T ss_dssp             CCCTT----SCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred             CCCCC----CCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            11111    1222334777999999999999999975

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.98  E-value=1.4e-34  Score=320.81  Aligned_cols=261  Identities=21%  Similarity=0.283  Sum_probs=177.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHH--ccCCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLR--NVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~--~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|+..+.||+|+||.||+|+..+           ..+.+..|.++..  .++||||+++++++......+....++||
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~   91 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVM   91 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEE
Confidence            4688999999999999999997652           2445666665544  58999999999866543334455689999


Q ss_pred             EecCCCCccccccccc-------cccccHHHHHHHhhhCC------CCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          727 EFLSNGSLGDWIHGER-------KNELDITSALDYLHNDC------EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~------~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ||+++|+|.++++...       .++.|++.||+|||+.+      .++|+||||||+|||++.++.+||+|||+++.+.
T Consensus        92 e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~  171 (336)
T 3g2f_A           92 EYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLT  171 (336)
T ss_dssp             CCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             ecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecc
Confidence            9999999999986433       34679999999999863      2389999999999999999999999999998764


Q ss_pred             cccCCC--CCccccceeccccccccccccCC-------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhcc---
Q 002376          794 ERVDNQ--SSISSTHVFMGSIGYVPPEYGLG-------ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVL---  859 (929)
Q Consensus       794 ~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~---  859 (929)
                      ......  .........+||+.|+|||++.+       ..++.++||||+|++++++.+...++.....  .....+   
T Consensus       172 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~  251 (336)
T 3g2f_A          172 GNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTE  251 (336)
T ss_dssp             SSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHH
T ss_pred             cccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcc
Confidence            321111  11112234579999999999987       4567899999999888886554333211111  000000   


Q ss_pred             ---Ch---HHHHhhcccchhhhhhh------HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          860 ---DP---ELRQLMTSNESQTIQLH------DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       860 ---~~---~l~~~~~~~~~~~~~~~------~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                         .+   ....... ....+...+      ......+.+++.+||+.||++|||++|++++|+++...+.+..
T Consensus       252 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          252 VGNHPTFEDMQVLVS-REKQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             HCSSCCHHHHHHHHT-TSCCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             cCCCchHHHHHhhhc-ccccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence               00   0000000 000000000      1122233348889999999999999999999999998877554

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.98  E-value=7.3e-34  Score=308.72  Aligned_cols=239  Identities=23%  Similarity=0.338  Sum_probs=171.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||++++..                   ..+.|.+|+.++++++||||+++++++..     ..
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~~   84 (294)
T 4eqm_A           10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-----DD   84 (294)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-----SS
T ss_pred             hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-----CC
Confidence            3578999999999999999986541                   13578899999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        85 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~  161 (294)
T 4eqm_A           85 CYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKAL  161 (294)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC
T ss_pred             eEEEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccc
Confidence            5899999999999999986432        3367899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...     .........||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+.   ...........
T Consensus       162 ~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~--~~~---~~~~~~~~~~~  231 (294)
T 4eqm_A          162 SET-----SLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA--VSI---AIKHIQDSVPN  231 (294)
T ss_dssp             ------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH--HHH---HHHHHSSCCCC
T ss_pred             ccc-----cccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh--HHH---HHHHhhccCCC
Confidence            322     11122345799999999999999999999999999877776554444322211  000   00000000000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHhhHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRI-GIREALRRLKSSQEI  916 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~ev~~~L~~~~~~  916 (929)
                      ........++..+.+++.+|++.||++|| +++++.+.|+++...
T Consensus       232 ~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~  276 (294)
T 4eqm_A          232 VTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE  276 (294)
T ss_dssp             HHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred             cchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence            00001111222333477799999999999 899999999887544

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.98  E-value=1e-33  Score=312.58  Aligned_cols=234  Identities=20%  Similarity=0.269  Sum_probs=174.6

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||.||+|++.                     ...++|.+|+.++++++||||++++++|....    
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----   90 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST----   90 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS----
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC----
Confidence            47888999999999999998753                     12457899999999999999999999996422    


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                        .++|+||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        91 --~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~  165 (327)
T 3poz_A           91 --VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAK  165 (327)
T ss_dssp             --EEEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHH
T ss_pred             --eEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCccee
Confidence              689999999999999987432         2467899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      ......    .........||+.|+|||++.+..++.++||||+|++++++.+ ...++...+. ...+    .+.... 
T Consensus       166 ~~~~~~----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~----~~~~~~-  236 (327)
T 3poz_A          166 LLGAEE----KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS----ILEKGE-  236 (327)
T ss_dssp             HHTTTC----C-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH----HHHTTC-
T ss_pred             EccCCc----ccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHH----HHHcCC-
Confidence            764321    1112233467889999999999999999999999988777554 4444332222 1111    111100 


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                       ......   .+...+.+ ++.+||+.||++||+|+|+++.|+++.+..
T Consensus       237 -~~~~~~---~~~~~~~~-li~~~l~~~p~~Rps~~ell~~l~~~~~~~  280 (327)
T 3poz_A          237 -RLPQPP---ICTIDVYM-IMVKCWMIDADSRPKFRELIIEFSKMARDP  280 (327)
T ss_dssp             -CCCCCT---TBCHHHHH-HHHHHTCSCGGGSCCHHHHHHHHHHHHTSH
T ss_pred             -CCCCCc---cCCHHHHH-HHHHHcCCChhhCCCHHHHHHHHHHHHhhh
Confidence             000111   11222333 777999999999999999999999987653

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=5.4e-34  Score=313.53  Aligned_cols=228  Identities=21%  Similarity=0.223  Sum_probs=171.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||.||+|....               ..+.+.+|+++++.++||||+++++++.+.     ...++
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----~~~~l   78 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFESM-----EELVM   78 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEET-----TEEEE
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCCCCeEeEEEecC-----CEEEE
Confidence            4689999999999999999987641               245688999999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC--CCceEEeccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE--EMTAKVGDFGLARFLL  793 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~--~~~~ki~DfGla~~~~  793 (929)
                      ||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.  ++.+||+|||+++...
T Consensus        79 v~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~  155 (321)
T 1tki_A           79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EEEeCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECC
Confidence            999999999999986432         2367899999999998   9999999999999987  7899999999998753


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..       .......||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+.+.......    ...
T Consensus       156 ~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~----~~~  222 (321)
T 1tki_A          156 PG-------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNAE----YTF  222 (321)
T ss_dssp             TT-------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHTC----CCC
T ss_pred             CC-------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH--HHHHHHHHcCC----CCC
Confidence            21       123446799999999999998899999999999877776554443322211  11111111111    111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......++..+.+++.+|++.||++|||+.|+++
T Consensus       223 ~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~  257 (321)
T 1tki_A          223 DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            11111112223334777999999999999999986

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.98  E-value=1.1e-33  Score=312.44  Aligned_cols=225  Identities=24%  Similarity=0.285  Sum_probs=169.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||+||+++...                   ..+.+.+|+.+++.++||||+++++++...     .
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~-----~   78 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTH-----D   78 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECS-----S
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeC-----C
Confidence            3578899999999999999987641                   234678999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        79 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~  155 (337)
T 1o6l_A           79 RLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEG  155 (337)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhc
Confidence            5899999999999998886432        3467999999999998   9999999999999999999999999999853


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...      .......+||+.|||||++.+..++.++||||+|+++|++..+..++....  ..+.......    ....
T Consensus       156 ~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i~~----~~~~  223 (337)
T 1o6l_A          156 ISD------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELILM----EEIR  223 (337)
T ss_dssp             CCT------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH----CCCC
T ss_pred             ccC------CCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC--HHHHHHHHHc----CCCC
Confidence            211      112344689999999999999999999999999987777655443332211  1111111111    1111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      ..    ..+...+++++.+|++.||++||     +++|+++
T Consensus       224 ~p----~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~  260 (337)
T 1o6l_A          224 FP----RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             CC----TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CC----CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence            11    11222233477799999999999     8888875

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.98  E-value=1.2e-33  Score=312.57  Aligned_cols=234  Identities=20%  Similarity=0.316  Sum_probs=167.8

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCC------
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDS------  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~------  716 (929)
                      .++|+..+.||+|+||.||+|++.                 ...+.+.+|++++++++|||||+++++|.+...      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            457888999999999999998764                 134678999999999999999999999865432      


Q ss_pred             ----------------------------------------------CCcceEEEEEEecCCCCccccccccc--------
Q 002376          717 ----------------------------------------------KNMEFLALVYEFLSNGSLGDWIHGER--------  742 (929)
Q Consensus       717 ----------------------------------------------~~~~~~~lV~e~~~~gsL~~~l~~~~--------  742 (929)
                                                                    ....+.++||||+++|+|.++++...        
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                          11234799999999999999987422        


Q ss_pred             ---cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC------ccccceeccccc
Q 002376          743 ---KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS------ISSTHVFMGSIG  813 (929)
Q Consensus       743 ---~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~------~~~~~~~~gt~~  813 (929)
                         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...........      .......+||+.
T Consensus       165 ~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  241 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKL  241 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGG
T ss_pred             HHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcC
Confidence               3467999999999998   9999999999999999999999999999876432211100      112234579999


Q ss_pred             cccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch-hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccc
Q 002376          814 YVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN-VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSC  892 (929)
Q Consensus       814 y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~C  892 (929)
                      |+|||++.+..++.++||||+|++++++..     +..+.. ..+.. ......   .  ...........+ .+++.+|
T Consensus       242 y~aPE~~~~~~~~~~~Di~slG~il~el~~-----~~~~~~~~~~~~-~~~~~~---~--~~~~~~~~~~~~-~~li~~~  309 (332)
T 3qd2_B          242 YMSPEQIHGNNYSHKVDIFSLGLILFELLY-----SFSTQMERVRII-TDVRNL---K--FPLLFTQKYPQE-HMMVQDM  309 (332)
T ss_dssp             GSCHHHHHCCCCCTHHHHHHHHHHHHHHHS-----CCCCHHHHHHHH-HHHHTT---C--CCHHHHHHCHHH-HHHHHHH
T ss_pred             ccChHHhcCCCCcchhhHHHHHHHHHHHHH-----cCCChhHHHHHH-HHhhcc---C--CCcccccCChhH-HHHHHHH
Confidence            999999999999999999999987766532     322221 11100 001110   0  000111111223 3477899


Q ss_pred             cCCCCCCCCCHHHHHH
Q 002376          893 TTESPGGRIGIREALR  908 (929)
Q Consensus       893 l~~dP~~RPs~~ev~~  908 (929)
                      |+.||++|||++|+++
T Consensus       310 l~~~p~~Rps~~~~l~  325 (332)
T 3qd2_B          310 LSPSPTERPEATDIIE  325 (332)
T ss_dssp             HCSSGGGSCCHHHHHH
T ss_pred             ccCCCCcCCCHHHHhh
Confidence            9999999999999985

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.98  E-value=1e-33  Score=311.55  Aligned_cols=239  Identities=18%  Similarity=0.214  Sum_probs=177.2

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...++||+|+||.||+|++.                 ...+.+.+|++++++++||||+++++++...+   ....+
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~~   85 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT---TRHKV   85 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT---TCCEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCC---CceEE
Confidence            46888999999999999998765                 12467889999999999999999999986533   23579


Q ss_pred             EEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee----cCCCceEEecccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDFGL  788 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl----~~~~~~ki~DfGl  788 (929)
                      +||||+++|+|.++++...           .++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~  162 (319)
T 4euu_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (319)
T ss_dssp             EEEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCC
Confidence            9999999999999987432           2367899999999998   99999999999999    7888999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccC--------CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL--------GERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV  858 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~  858 (929)
                      ++.....       .......||+.|+|||++.        +..++.++||||+|++++++.....++.....  ...++
T Consensus       163 a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~  235 (319)
T 4euu_A          163 ARELEDD-------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEV  235 (319)
T ss_dssp             CEECCTT-------CCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHH
T ss_pred             ceecCCC-------CceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHH
Confidence            9876322       1123357999999999986        57799999999999888776665554432221  11111


Q ss_pred             cChHHHHhhcc-----------------cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHh
Q 002376          859 LDPELRQLMTS-----------------NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS  912 (929)
Q Consensus       859 ~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~  912 (929)
                      +...+.+....                 .........+.+...+.+++.+|++.||++|||++|+++...+
T Consensus       236 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d  306 (319)
T 4euu_A          236 MYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD  306 (319)
T ss_dssp             HHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred             HHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence            11111110000                 0000112223455566668889999999999999999988765

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=1.4e-33  Score=312.97  Aligned_cols=257  Identities=23%  Similarity=0.304  Sum_probs=178.0

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHHcc--CCccccceeeecccCCCCCcceEE
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRNV--RHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~l--~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ....++|+..+.||+|+||.||+|++.+           ....+.+|.+++...  +||||+++++++..... .....+
T Consensus        33 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~-~~~~~~  111 (337)
T 3mdy_A           33 RTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEEASWFRETEIYQTVLMRHENILGFIAADIKGTG-SWTQLY  111 (337)
T ss_dssp             TTHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCG-GGCEEE
T ss_pred             cccccceEEEeEeecCCCeEEEEEEECCceEEEEEEeccccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCC-CCCceE
Confidence            3445689999999999999999998762           234566677776665  89999999999876432 224689


Q ss_pred             EEEEecCCCCccccccccc-------cccccHHHHHHHhhhCC-----CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDC-----EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~-----~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +||||+++|+|.++++...       .++.|++.||+|||+.+     .++|+||||||+||+++.++.+||+|||+++.
T Consensus       112 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~  191 (337)
T 3mdy_A          112 LITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVK  191 (337)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred             EEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCcee
Confidence            9999999999999986432       34678999999999752     34899999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCC------CCCCCCcCCCCCcchhHHhhh-----cCCchhhhccC
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTA------GDVPTSESFAGEFNIVKWVES-----NLPENVLQVLD  860 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~DV~s~g~~~~~~~~~~~~~~-----~~~~~~~~~~~  860 (929)
                      +......  .........||+.|+|||++.+..++.+      +||||+|+++|++.....++.     ..|.......+
T Consensus       192 ~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~  269 (337)
T 3mdy_A          192 FISDTNE--VDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSD  269 (337)
T ss_dssp             CC-----------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSS
T ss_pred             ecccccc--ccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCC
Confidence            5432111  1111224579999999999988877666      999999988887655522221     11110000000


Q ss_pred             ---hHHHHhhc-----ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          861 ---PELRQLMT-----SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       861 ---~~l~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                         ........     ..........++..++. +++.+||+.||++|||++|+++.|+++.+..
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~li~~~l~~dP~~Rps~~ell~~L~~l~~~~  333 (337)
T 3mdy_A          270 PSYEDMREIVCIKKLRPSFPNRWSSDECLRQMG-KLMTECWAHNPASRLTALRVKKTLAKMSESQ  333 (337)
T ss_dssp             CCHHHHHHHHTTSCCCCCCCGGGGGSHHHHHHH-HHHHHHSCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred             CchhhhHHHHhhhccCccccccchhhHHHHHHH-HHHHHhhhhChhhCCCHHHHHHHHHHHHhhc
Confidence               01111110     00011111112333344 4888999999999999999999999987754

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.98  E-value=5.1e-34  Score=321.24  Aligned_cols=237  Identities=22%  Similarity=0.283  Sum_probs=174.2

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ..++|...+.||+|+||.||+|++..                 ..++|.+|++++++++|||||+++++|...+     .
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-----~  186 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQ-----P  186 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSS-----S
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCC-----C
Confidence            34678889999999999999987641                 1246889999999999999999999996533     3


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++..
T Consensus       187 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~  263 (377)
T 3cbl_A          187 IYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREE  263 (377)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred             cEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceec
Confidence            799999999999999986432         2367899999999998   9999999999999999999999999999864


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .....    ........+++.|+|||++.++.++.++||||+|++++++.. ...++.....       ...........
T Consensus       264 ~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~-------~~~~~~~~~~~  332 (377)
T 3cbl_A          264 ADGVY----AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN-------QQTREFVEKGG  332 (377)
T ss_dssp             TTSEE----ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH-------HHHHHHHHTTC
T ss_pred             CCCce----eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-------HHHHHHHHcCC
Confidence            32110    011112246788999999998899999999999987776543 2222222111       11111111110


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .  ...++..+..+.+++.+||+.||++|||++|+++.|+++...
T Consensus       333 ~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~  375 (377)
T 3cbl_A          333 R--LPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKR  375 (377)
T ss_dssp             C--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C--CCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhh
Confidence            0  001111122233377799999999999999999999998765

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.98  E-value=1.1e-33  Score=312.06  Aligned_cols=227  Identities=20%  Similarity=0.235  Sum_probs=169.1

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      +.|+..+.||+|+||.||+|+...                      ..+.+.+|+.++++++||||+++++++..     
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----   85 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN-----   85 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----
Confidence            468889999999999999987541                      24679999999999999999999999854     


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~Df  786 (929)
                      ....++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++    .+||+||
T Consensus        86 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Df  162 (326)
T 2y0a_A           86 KTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDF  162 (326)
T ss_dssp             SSEEEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCC
T ss_pred             CCEEEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEEC
Confidence            334899999999999999986433        3367899999999998   999999999999999887    8999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      |+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.+. .+...
T Consensus       163 g~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~-~~~~~  232 (326)
T 2y0a_A          163 GLAHKIDFG-------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLA-NVSAV  232 (326)
T ss_dssp             TTCEECCTT-------SCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHH-HHHHT
T ss_pred             CCCeECCCC-------CccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH--HHHHH-HHHhc
Confidence            999875321       112335799999999999999999999999999877765544333321111  11110 11110


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         ............+..+++++.+||+.||++|||++|+++
T Consensus       233 ---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  271 (326)
T 2y0a_A          233 ---NYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  271 (326)
T ss_dssp             ---CCCCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             ---CCCcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence               000011111112223344777999999999999999986

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.98  E-value=1.3e-34  Score=330.25  Aligned_cols=237  Identities=20%  Similarity=0.197  Sum_probs=175.4

Q ss_pred             ChHHHHHhhCCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccceeeecc
Q 002376          652 SYDELRRATGNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKLITSCS  712 (929)
Q Consensus       652 ~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~  712 (929)
                      .+++++..+++|+..++||+|+||+||+|+....                   .+.+.+|+.++..++|||||+++++|.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            4566677788999999999999999999986521                   123789999999999999999999995


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                      +     ....|+|||||++|+|.++++...         .++.|++.||+|||+.   +||||||||+|||++.++.+||
T Consensus       145 ~-----~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL  216 (437)
T 4aw2_A          145 D-----DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRL  216 (437)
T ss_dssp             C-----SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEE
T ss_pred             e-----CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEE
Confidence            4     345899999999999999987521         2467899999999998   9999999999999999999999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhh
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVL  856 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~  856 (929)
                      +|||+|+.....     ........+||+.|||||++.     ...++.++||||+|+++|++..+..++.....  ...
T Consensus       217 ~DFGla~~~~~~-----~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~  291 (437)
T 4aw2_A          217 ADFGSCLKLMED-----GTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYG  291 (437)
T ss_dssp             CCCTTCEECCTT-----SCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHH
T ss_pred             cchhhhhhcccC-----CCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHH
Confidence            999999865321     111223458999999999987     56799999999999887776655544432221  111


Q ss_pred             hccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCC--CCCHHHHHH
Q 002376          857 QVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGG--RIGIREALR  908 (929)
Q Consensus       857 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~ev~~  908 (929)
                      .++........+.   ....    ++..+++++.+|+..+|++  ||+++|+++
T Consensus       292 ~i~~~~~~~~~p~---~~~~----~s~~~~dLi~~lL~~~~~r~~r~~~~eil~  338 (437)
T 4aw2_A          292 KIMNHKERFQFPT---QVTD----VSENAKDLIRRLICSREHRLGQNGIEDFKK  338 (437)
T ss_dssp             HHHTHHHHCCCCS---SCCC----SCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred             hhhhccccccCCc---cccc----CCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence            1211111100110   0001    1222334777999888888  999999875

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.98  E-value=2.1e-33  Score=301.05  Aligned_cols=234  Identities=27%  Similarity=0.344  Sum_probs=174.6

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||+|++.              ...+++.+|++++++++||||+++++++.+..     ..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~   84 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-----PICLVF   84 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-----SEEEEE
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEecccccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCC-----ceEEEE
Confidence            57888899999999999998764              23568999999999999999999999986533     389999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.++++..+         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.......
T Consensus        85 e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  161 (269)
T 4hcu_A           85 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY  161 (269)
T ss_dssp             ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH
T ss_pred             EeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccccccccccc
Confidence            9999999999986432         2357899999999998   999999999999999999999999999986532211


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                           .......||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+.. ..+......  .....
T Consensus       162 -----~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~--~~~~-~~~~~~~~~--~~~~~  231 (269)
T 4hcu_A          162 -----TSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--SEVV-EDISTGFRL--YKPRL  231 (269)
T ss_dssp             -----HSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHH-HHHHTTCCC--CCCTT
T ss_pred             -----ccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH--HHHH-HHHhcCccC--CCCCc
Confidence                 11223457888999999998999999999999977666543 3333222111  1111 111110000  00011


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                          ....+.+++.+||+.||++||+++|+++.|+++.+.
T Consensus       232 ----~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~  267 (269)
T 4hcu_A          232 ----ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES  267 (269)
T ss_dssp             ----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred             ----CCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence                112233377799999999999999999999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.98  E-value=8.2e-36  Score=345.94  Aligned_cols=369  Identities=18%  Similarity=0.170  Sum_probs=179.3

Q ss_pred             cccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccc-
Q 002376          143 TELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY-  221 (929)
Q Consensus       143 ~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-  221 (929)
                      ++|++|||++|+++.......+..+++|++|+|++|.+++...    ..++..+..+++|++|+|++|+++...+..+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~----~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC----KDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHH----HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHH----HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            5677788888877632222235666777777777776532110    01233445556666666666666543333222 


Q ss_pred             cCC----CCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCC-----
Q 002376          222 NMT----SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG-----  292 (929)
Q Consensus       222 ~l~----~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-----  292 (929)
                      .+.    +|++|+|++|+++..--                     +.++..+..+++|+.|++++|.+++..+..     
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~---------------------~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  137 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGC---------------------GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  137 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGH---------------------HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             HHhhCCCceeEEEccCCCCCHHHH---------------------HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH
Confidence            222    45555555555541000                     123444555555666666665554322211     


Q ss_pred             CCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhc----cccccEEEecCCccccc
Q 002376          293 LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNF----SNELSKLYLGGNHIYGK  368 (929)
Q Consensus       293 ~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~----~~~L~~L~Ls~N~l~~~  368 (929)
                      +...++|++|++++|++.....   ..+...+..+++|++|+|++|.+++..+..+...    ..+|++|+|++|.+++.
T Consensus       138 ~~~~~~L~~L~L~~n~l~~~~~---~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          138 LDPQCRLEKLQLEYCSLSAASC---EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             TSTTCCCCEEECTTSCCBGGGH---HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             hcCCCcceEEECCCCCCCHHHH---HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence            1123344445554444432110   0011233445566666666666654433333221    11466666666665542


Q ss_pred             ----cCCCCCCCCcccEEEeeCCCCCccc-----CccccCCCCCCEEEecCCcCCCC----CcccccCCCCCceecccCc
Q 002376          369 ----IPASIGRLRSLTLLDLSYNSISGEI-----PIEIGQLQGLQVLGLAGNEIPGG----IPNSLANLKKLNQIDLSGN  435 (929)
Q Consensus       369 ----~p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N  435 (929)
                          ++..+..+++|++|+|++|.+++..     +..+..+++|++|++++|++++.    ++..+..+++|++|+|++|
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence                3444555566666666666555322     11222355566666666655542    3444555556666666666


Q ss_pred             ccccccCccccc-----ccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhc-----Cc
Q 002376          436 ELTGEIPISFGN-----FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN-----CK  505 (929)
Q Consensus       436 ~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-----l~  505 (929)
                      .+++..+..+..     .++|+.|++++|.+++..    ...++..+..+++|++|||++|.+++..+..+..     .+
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  370 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC----CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS  370 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHH----HHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCC
Confidence            655433332222     145556666666554321    0112344445555555555555555433333332     34


Q ss_pred             Ccceeecccccccc----cCCccccCCCCCCEEECCCCcCCC
Q 002376          506 SLEELLMAYNQFSG----PIPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       506 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      +|++|+|++|++++    .+|..+..+++|++|||++|++++
T Consensus       371 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          371 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             ceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            55555555555553    445555555555555555555543

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-33  Score=317.05  Aligned_cols=237  Identities=20%  Similarity=0.227  Sum_probs=173.9

Q ss_pred             CCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||+||+|++.                      ....++.+|+.++++++|||||++++++....   
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~---  147 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL---  147 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCC---
Confidence            57888999999999999998832                      12346889999999999999999999986533   


Q ss_pred             cceEEEEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC---c
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---T  780 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~---~  780 (929)
                        ..++||||+++|+|.++++..+               .++.||+.||+|||+.   +|+||||||+|||++.++   .
T Consensus       148 --~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~  222 (367)
T 3l9p_A          148 --PRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRV  222 (367)
T ss_dssp             --SCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCC
T ss_pred             --CCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCce
Confidence              3699999999999999987432               2367899999999998   999999999999999554   5


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhcc
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVL  859 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~  859 (929)
                      +||+|||+|+.+......    .......||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .   
T Consensus       223 ~kL~DFG~a~~~~~~~~~----~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--~---  293 (367)
T 3l9p_A          223 AKIGDFGMARDIYRAGYY----RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--Q---  293 (367)
T ss_dssp             EEECCCHHHHHHHHHSSC----TTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--H---
T ss_pred             EEECCCcccccccccccc----ccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--H---
Confidence            999999999865332111    11233468999999999999999999999999987776543 2222221111  1   


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                        .+..........  .........+.+++.+||+.||++||+++||++.|+.+.+...
T Consensus       294 --~~~~~i~~~~~~--~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~~  348 (367)
T 3l9p_A          294 --EVLEFVTSGGRM--DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPD  348 (367)
T ss_dssp             --HHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred             --HHHHHHHcCCCC--CCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhChh
Confidence              111111110000  0001111222337779999999999999999999999887654

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.97  E-value=2.4e-34  Score=325.59  Aligned_cols=235  Identities=19%  Similarity=0.244  Sum_probs=174.9

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccceeeeccc
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      ..+++...++|+..++||+|+||+||+|+....                   .+.+.+|+.+++.++|||||+++++|.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            355666778999999999999999999876521                   2247799999999999999999999954


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                           ....|+||||+++|+|.++++..+       .++.||+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus       141 -----~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DF  212 (410)
T 3v8s_A          141 -----DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADF  212 (410)
T ss_dssp             -----SSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred             -----CCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEecc
Confidence                 345899999999999999886432       3467999999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC----CCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER----PSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD  860 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~  860 (929)
                      |+|+.+...     ........+||+.|||||++.+..    ++.++||||+|+++|++..+..++.....  ....+..
T Consensus       213 G~a~~~~~~-----~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~  287 (410)
T 3v8s_A          213 GTCMKMNKE-----GMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMN  287 (410)
T ss_dssp             TTCEECCTT-----SEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHT
T ss_pred             ceeEeeccC-----CcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHh
Confidence            999865321     111223468999999999998765    88999999999887776655544432221  1111111


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCC--CCCHHHHHH
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGG--RIGIREALR  908 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~--RPs~~ev~~  908 (929)
                      .......    .....    ++..+++++.+|++.+|++  ||+++||++
T Consensus       288 ~~~~~~~----p~~~~----~s~~~~~li~~lL~~~~~rlgR~~~~ei~~  329 (410)
T 3v8s_A          288 HKNSLTF----PDDND----ISKEAKNLICAFLTDREVRLGRNGVEEIKR  329 (410)
T ss_dssp             HHHHCCC----CTTCC----CCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred             ccccccC----CCccc----ccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence            1110000    00011    2223334777999999998  999999985

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-33  Score=316.46  Aligned_cols=241  Identities=20%  Similarity=0.320  Sum_probs=177.7

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|...+.||+|+||.||+|++.                        ...+++.+|+++++++ +|||||+++++|...
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            467888999999999999998641                        1235688999999999 999999999999653


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +     ..++||||+++|+|.+++...+                        .++.|++.||+|||+.   +|+||||||
T Consensus       148 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp  219 (382)
T 3tt0_A          148 G-----PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA  219 (382)
T ss_dssp             S-----SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred             C-----ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence            3     3799999999999999986432                        2357899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +|||+++++.+||+|||+|+.......    ........||+.|+|||++.+..++.++||||+|++++++.. ...++.
T Consensus       220 ~NIll~~~~~~kL~DFG~a~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~  295 (382)
T 3tt0_A          220 RNVLVTEDNVMKIADFGLARDIHHIDY----YKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  295 (382)
T ss_dssp             GGEEECTTCCEEECSCSCCCCSSCCCT----TCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ceEEEcCCCcEEEcccCcccccccccc----cccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999986532211    112233467899999999999999999999999987766543 322222


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                      ...  ..++. ..+.....  ........+   ++. +++.+||+.||++|||++|+++.|+++......+.
T Consensus       296 ~~~--~~~~~-~~~~~~~~--~~~~~~~~~---~l~-~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~~~  358 (382)
T 3tt0_A          296 GVP--VEELF-KLLKEGHR--MDKPSNCTN---ELY-MMMRDCWHAVPSQRPTFKQLVEDLDRIVALTSNQE  358 (382)
T ss_dssp             TCC--HHHHH-HHHHTTCC--CCCCSSCCH---HHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHSCSCC
T ss_pred             CCC--HHHHH-HHHHcCCC--CCCCccCCH---HHH-HHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhcCC
Confidence            111  11111 11111000  000111112   233 37779999999999999999999999987755443

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=1.1e-33  Score=312.84  Aligned_cols=245  Identities=15%  Similarity=0.131  Sum_probs=179.2

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||.||+|+..              ...+.+.+|+++++++ +||||+++++++..     ....++
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~-----~~~~~l   82 (330)
T 2izr_A            8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSRAPQLHLEYRFYKQLGSGDGIPQVYYFGPC-----GKYNAM   82 (330)
T ss_dssp             TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCSSCCHHHHHHHHHHHCSCTTSCCEEEEEEE-----TTEEEE
T ss_pred             cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHhhCCCCCCEEEEEEec-----CCccEE
Confidence            357899999999999999999753              1234688999999999 99999999999854     335899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc-----eEEecccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT-----AKVGDFGLAR  790 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~-----~ki~DfGla~  790 (929)
                      ||||+ +|+|.+++...         ..++.|++.||+|||+.   +|+||||||+|||++.++.     +||+|||+|+
T Consensus        83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~  158 (330)
T 2izr_A           83 VLELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK  158 (330)
T ss_dssp             EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCE
T ss_pred             EEEeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEcccce
Confidence            99999 99999998742         13467999999999998   9999999999999998887     9999999998


Q ss_pred             ccccccCCC-CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQ-SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      .+....... ..........||+.|+|||++.+..++.++||||+|++++++.....++..... ...+.+.........
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~  238 (330)
T 2izr_A          159 EYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRA  238 (330)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHH
T ss_pred             eeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhcc
Confidence            764322111 111122456899999999999999999999999999887776655555443322 111111111110000


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      . .  .....+..+++.+ ++.+||+.||++||+++++.+.|+++.+..
T Consensus       239 ~-~--~~~~~~~~p~~~~-li~~~l~~~p~~RP~~~~l~~~l~~~~~~~  283 (330)
T 2izr_A          239 T-P--IEVLCENFPEMAT-YLRYVRRLDFFEKPDYDYLRKLFTDLFDRK  283 (330)
T ss_dssp             S-C--HHHHTTTCHHHHH-HHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             C-C--HHHHhccChHHHH-HHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence            0 0  0000011223333 778999999999999999999999988765

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.9e-33  Score=308.75  Aligned_cols=238  Identities=19%  Similarity=0.237  Sum_probs=172.1

Q ss_pred             hCCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      .++|+..+.||+|+||.||+|++.                     ...+.+.+|+.++++++||||++++++|....   
T Consensus        14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~---   90 (327)
T 3lzb_A           14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST---   90 (327)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS---
T ss_pred             HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC---
Confidence            357899999999999999998753                     13567999999999999999999999986422   


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                         .++|+||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        91 ---~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a  164 (327)
T 3lzb_A           91 ---VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLA  164 (327)
T ss_dssp             ---EEEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC-
T ss_pred             ---ceEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcce
Confidence               689999999999999986432         3367899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCc-hhhhccChHHHHhh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPE-NVLQVLDPELRQLM  867 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~-~~~~~~~~~l~~~~  867 (929)
                      +.......    ........||+.|+|||++.+..++.++||||+|++++++.. ...++...+. ...+    .+....
T Consensus       165 ~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~----~~~~~~  236 (327)
T 3lzb_A          165 KLLGAEEK----EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISS----ILEKGE  236 (327)
T ss_dssp             -------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHH----HHHTTC
T ss_pred             eEccCccc----cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH----HHHcCC
Confidence            87642211    112233457889999999999999999999999987777544 3333332222 1111    111100


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                        ........+.   .+. +++.+||+.||++||+++|+++.|+++.+.....
T Consensus       237 --~~~~~~~~~~---~l~-~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~  283 (327)
T 3lzb_A          237 --RLPQPPICTI---DVY-MIMRKCWMIDADSRPKFRELIIEFSKMARDPQRY  283 (327)
T ss_dssp             --CCCCCTTBCH---HHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHTSHHHH
T ss_pred             --CCCCCccCCH---HHH-HHHHHHcCCChhHCcCHHHHHHHHHHHHhCcCce
Confidence              0001111112   223 3777999999999999999999999998665433

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.97  E-value=1.9e-33  Score=301.03  Aligned_cols=235  Identities=24%  Similarity=0.308  Sum_probs=174.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..+.||+|+||.||+|+...              ..+++.+|++++++++||||+++++++...     ...++|
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~lv   81 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPKLVKFYGVCSKE-----YPIYIV   81 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SSEEEE
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCCEeeEEEEEccC-----CceEEE
Confidence            4578889999999999999987652              356799999999999999999999998543     348999


Q ss_pred             EEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      |||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..... 
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~-  157 (268)
T 3sxs_A           82 TEYISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD-  157 (268)
T ss_dssp             EECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTT-
T ss_pred             EEccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchh-
Confidence            99999999999986432         2367899999999998   9999999999999999999999999999865321 


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                          .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+.. ..+....  ......
T Consensus       158 ----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~-~~~~~~~--~~~~~~  228 (268)
T 3sxs_A          158 ----QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTN--SEVV-LKVSQGH--RLYRPH  228 (268)
T ss_dssp             ----CEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCH--HHHH-HHHHTTC--CCCCCT
T ss_pred             ----hhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccCh--HHHH-HHHHcCC--CCCCCC
Confidence                1111223456788999999998899999999999977666543 3333322211  0000 0011100  000001


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..++    .+.+++.+||+.||++|||++|+++.|+++.+.
T Consensus       229 ~~~~----~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~  265 (268)
T 3sxs_A          229 LASD----TIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK  265 (268)
T ss_dssp             TSCH----HHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred             cChH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence            1112    233377799999999999999999999988654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.3e-35  Score=344.20  Aligned_cols=311  Identities=20%  Similarity=0.185  Sum_probs=186.6

Q ss_pred             cccEEEeecccCCC----ccCCccccCCCCceEEeeecCCCCcCCcccc----cCCCCcceeeccCCcCCCC----CCCc
Q 002376          201 NLKVLDLTINRLAG----TVPSTIYNMTSLVHLRLASNQLGGEIPYDVR----DTLPNLLDFIYCFNRFTGK----IPGS  268 (929)
Q Consensus       201 ~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~----~~l~~L~~l~l~~N~l~~~----~p~~  268 (929)
                      +|++|+|++|+++.    .++..|.++++|++|+|++|.+++..+..+.    ...++|++|++++|++++.    ++..
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~  165 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  165 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence            45555555555542    3345555555555555555555432222111    1123344444444444432    2344


Q ss_pred             ccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCcccccc-CCCCCCCEEEccCCccccc----
Q 002376          269 LHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSL-TNSTHLNYLALDGNQFEGK----  343 (929)
Q Consensus       269 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~-~~l~~L~~L~Ls~N~l~~~----  343 (929)
                      +..+++|+.|++++|.+++..+..+.                           ..+ ...++|++|+|++|++++.    
T Consensus       166 l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------------~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          166 LRAKPDFKELTVSNNDINEAGVRVLC---------------------------QGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHH---------------------------HHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             HhhCCCCCEEECcCCCcchHHHHHHH---------------------------HHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            45556666666666666533221111                           001 1234666666666666643    


Q ss_pred             cCchhhhccccccEEEecCCcccccc-----CCCCCCCCcccEEEeeCCCCCcc----cCccccCCCCCCEEEecCCcCC
Q 002376          344 IPESIGNFSNELSKLYLGGNHIYGKI-----PASIGRLRSLTLLDLSYNSISGE----IPIEIGQLQGLQVLGLAGNEIP  414 (929)
Q Consensus       344 ~p~~~~~~~~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~  414 (929)
                      ++..+..+. +|++|+|++|.+++..     +..+..+++|++|+|++|.+++.    ++..+..+++|++|++++|.++
T Consensus       219 l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  297 (461)
T 1z7x_W          219 LCGIVASKA-SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELG  297 (461)
T ss_dssp             HHHHHHHCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCH
T ss_pred             HHHHHHhCC-CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCc
Confidence            355555554 6777777777766432     23344577888888888888754    5666777888888888888876


Q ss_pred             CCCcccccC-----CCCCceecccCcccccc----cCcccccccccceecccCCcCCCCCCCCcccCCchhhhc-----c
Q 002376          415 GGIPNSLAN-----LKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR-----L  480 (929)
Q Consensus       415 ~~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~-----l  480 (929)
                      +..+..+..     .++|++|+|++|.+++.    ++..+..+++|+.|+|++|++++..        +..+..     .
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--------~~~l~~~l~~~~  369 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG--------VRELCQGLGQPG  369 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH--------HHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc--------HHHHHHHHcCCC
Confidence            544443332     26888888888888765    4556667788888888888876432        222322     5


Q ss_pred             cCccEEEecCCCCCC----CCCcchhcCcCcceeecccccccccCCcccc-----CCCCCCEEECCCCcCCCcCCc
Q 002376          481 ENVVTIDLSDNSLSG----NLPNSLKNCKSLEELLMAYNQFSGPIPNIVA-----ELKGLEVLDLSSNKLSGSIPS  547 (929)
Q Consensus       481 ~~L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~  547 (929)
                      ++|++|+|++|++++    .+|..+..+++|++|+|++|++++.....+.     ....|+.|++.++.+....++
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~  445 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED  445 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence            688899999998886    6788888889999999999988754222211     234677777777776644433

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2e-33  Score=315.11  Aligned_cols=240  Identities=23%  Similarity=0.300  Sum_probs=165.8

Q ss_pred             CCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .|+..+.||+|+||.||+|+..                    ...++|.+|+.++++++|||||+++++|...+    ..
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~----~~  165 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE----GS  165 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCS----SC
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCC----CC
Confidence            3566789999999999988642                    12467899999999999999999999986433    24


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+++|+|.++++...         .++.||+.||+|||+.   +|+||||||+||++++++.+||+|||+++.+
T Consensus       166 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~  242 (373)
T 3c1x_A          166 PLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM  242 (373)
T ss_dssp             CEEEEECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC------
T ss_pred             eEEEEECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeeccccccc
Confidence            799999999999999986432         2357899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh--HHHHhhccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP--ELRQLMTSN  870 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~  870 (929)
                      .....  ..........||+.|+|||++.+..++.++||||+|+++|++.+.    +..|.......+.  .+....  .
T Consensus       243 ~~~~~--~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~----~~~p~~~~~~~~~~~~~~~~~--~  314 (373)
T 3c1x_A          243 YDKEF--DSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR----GAPPYPDVNTFDITVYLLQGR--R  314 (373)
T ss_dssp             -----------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT----SCCSCTTSCSSCHHHHHHTTC--C
T ss_pred             ccccc--ccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhC----cCCCCCCCCHHHHHHHHHcCC--C
Confidence            32211  111122334678899999999999999999999999877765431    1112111111111  111100  0


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      ......    .+..+.+++.+||+.||++||+++|+++.|+++...+...
T Consensus       315 ~~~p~~----~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~  360 (373)
T 3c1x_A          315 LLQPEY----CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  360 (373)
T ss_dssp             CCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             CCCCCC----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcccc
Confidence            000111    1122333777999999999999999999999998876543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=5e-34  Score=313.78  Aligned_cols=246  Identities=22%  Similarity=0.258  Sum_probs=177.6

Q ss_pred             CCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          663 FSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      |+..+.||+|+||.||++.+.                     ...+.+.+|++++++++||||+++++++...+   ...
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~  109 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAG---AAS  109 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETT---TTE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCC---Cce
Confidence            488899999999999765421                     12456889999999999999999999986532   345


Q ss_pred             EEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      .++||||+++|+|.+++....       .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       110 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~  186 (318)
T 3lxp_A          110 LQLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPE  186 (318)
T ss_dssp             EEEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECCT
T ss_pred             EEEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccccc
Confidence            899999999999999987533       3467899999999998   999999999999999999999999999987642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh---ccCh-----HHHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ---VLDP-----ELRQL  866 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~---~~~~-----~l~~~  866 (929)
                      ..   ..........||..|+|||++.+..++.++||||+|++++++.+...++...+....+   ....     .+...
T Consensus       187 ~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (318)
T 3lxp_A          187 GH---EYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTEL  263 (318)
T ss_dssp             TC---SEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             cc---cccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHH
Confidence            21   1111123346888999999999989999999999998877766554443322111100   0000     11111


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      .....  ........+..+.+++.+||+.||++|||++|+++.|+++.+.+..
T Consensus       264 ~~~~~--~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~  314 (318)
T 3lxp_A          264 LERGE--RLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQG  314 (318)
T ss_dssp             HHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC
T ss_pred             Hhccc--CCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhcc
Confidence            10000  0000111112233377799999999999999999999999999873

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.97  E-value=9.3e-34  Score=318.89  Aligned_cols=226  Identities=24%  Similarity=0.261  Sum_probs=165.8

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..++||+|+||+||+++...                   ..+.+.+|..++.++ +|||||++++++.+     .
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-----~  125 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----E  125 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC-----S
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE-----C
Confidence            4578999999999999999987652                   123577899999887 89999999999854     3


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...|+||||+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus       126 ~~~~lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~  202 (396)
T 4dc2_A          126 SRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKE  202 (396)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC
T ss_pred             CEEEEEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeee
Confidence            45899999999999999886432        3467999999999998   999999999999999999999999999985


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccC-hHHHHh-hc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLD-PELRQL-MT  868 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~-~~  868 (929)
                      ...      ........+||+.|||||++.+..++.++||||+|+++|++..+..++..... ....... ..+... ..
T Consensus       203 ~~~------~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~  276 (396)
T 4dc2_A          203 GLR------PGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILE  276 (396)
T ss_dssp             CCC------TTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHH
T ss_pred             ccc------CCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhc
Confidence            321      11223456899999999999999999999999999888776665554432211 0000000 111111 11


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      ....    .+..+...+++++.+||+.||++||++
T Consensus       277 ~~~~----~p~~~s~~~~~li~~lL~~dP~~R~~~  307 (396)
T 4dc2_A          277 KQIR----IPRSLSVKAASVLKSFLNKDPKERLGC  307 (396)
T ss_dssp             CCCC----CCTTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred             cccC----CCCcCCHHHHHHHHHHhcCCHhHcCCC
Confidence            1111    111122233447779999999999996

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.6e-34  Score=316.04  Aligned_cols=241  Identities=19%  Similarity=0.274  Sum_probs=176.0

Q ss_pred             HhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      ...++|+..+.||+|+||.||+|++.                      ...+.+.+|+.+++++ +||||+++++++...
T Consensus        42 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  121 (344)
T 1rjb_A           42 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  121 (344)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             cCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeC
Confidence            34578899999999999999998751                      1235788999999999 899999999998653


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc-------------------------------cccccHHHHHHHhhhCCCCCE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER-------------------------------KNELDITSALDYLHNDCEVPV  763 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------------------------------~~~~~ia~aL~yLH~~~~~~i  763 (929)
                      +     ..++||||+++|+|.+++...+                               .++.|++.||+|||+.   +|
T Consensus       122 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  193 (344)
T 1rjb_A          122 G-----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SC  193 (344)
T ss_dssp             S-----SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             C-----ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence            3     3799999999999999986432                               1356899999999998   99


Q ss_pred             EecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch
Q 002376          764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       764 iHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                      +||||||+||+++.++.+||+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++..
T Consensus       194 vH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~----~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t  269 (344)
T 1rjb_A          194 VHRDLAARNVLVTHGKVVKICDFGLARDIMSDS----NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS  269 (344)
T ss_dssp             EETTCSGGGEEEETTTEEEECCCGGGSCGGGCT----TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCChhhEEEcCCCcEEeCCCccCcccccCc----cceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHc
Confidence            999999999999999999999999998664221    1112234568899999999999999999999999987776543


Q ss_pred             -hHHhhhcCCchhhhccChHHHHhhccc--chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          844 -VKWVESNLPENVLQVLDPELRQLMTSN--ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       844 -~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                       ...++...+.      +..........  .......++    -+.+++.+||+.||++|||+.|+++.|+.+.......
T Consensus       270 ~g~~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~~  339 (344)
T 1rjb_A          270 LGVNPYPGIPV------DANFYKLIQNGFKMDQPFYATE----EIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAEEA  339 (344)
T ss_dssp             TSCCSSTTCCC------SHHHHHHHHTTCCCCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC------
T ss_pred             CCCCCcccCCc------HHHHHHHHhcCCCCCCCCCCCH----HHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHHHH
Confidence             3333322211      11111111111  000111112    2233777999999999999999999999987765543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=1.6e-33  Score=313.48  Aligned_cols=237  Identities=20%  Similarity=0.238  Sum_probs=168.7

Q ss_pred             HHHhhCCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccC
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSL  714 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~  714 (929)
                      +....++|+..+.||+|+||.||+|+..                     ...+.+.+|++++++++|||||++++++.+ 
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-   99 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED-   99 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc-
Confidence            4455678999999999999999998654                     123578899999999999999999999954 


Q ss_pred             CCCCcceEEEEEEecCCCCccccccc------------------------------------------------cccccc
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHG------------------------------------------------ERKNEL  746 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~------------------------------------------------~~~~~~  746 (929)
                          ....++||||+++|+|.+++..                                                ...++.
T Consensus       100 ----~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  175 (345)
T 3hko_A          100 ----EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR  175 (345)
T ss_dssp             ----SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred             ----CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence                3358999999999999998841                                                012467


Q ss_pred             cHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC--ceEEeccccccccccccCCCCCccccceeccccccccccccCC--
Q 002376          747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG--  822 (929)
Q Consensus       747 ~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~--~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  822 (929)
                      |++.||+|||+.   +|+||||||+||+++.++  .+||+|||+++.+......  .........||+.|+|||++.+  
T Consensus       176 qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~  250 (345)
T 3hko_A          176 QIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG--EYYGMTTKAGTPYFVAPEVLNTTN  250 (345)
T ss_dssp             HHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC----------CCCGGGCCHHHHTCSS
T ss_pred             HHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCcc--ccccccccCCCccccCchhhccCC
Confidence            899999999998   999999999999998776  8999999999866432111  1112334579999999999875  


Q ss_pred             CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC
Q 002376          823 ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG  902 (929)
Q Consensus       823 ~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs  902 (929)
                      ..++.++||||+|++++++.....++.....  .+........    ...........+...+.+++.+|++.||++||+
T Consensus       251 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps  324 (345)
T 3hko_A          251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGVND--ADTISQVLNK----KLCFENPNYNVLSPLARDLLSNLLNRNVDERFD  324 (345)
T ss_dssp             SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC----CCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCh--HHHHHHHHhc----ccccCCcccccCCHHHHHHHHHHcCCChhHCCC
Confidence            6789999999999877765554443322221  1111111111    100000111112223334777999999999999


Q ss_pred             HHHHHH
Q 002376          903 IREALR  908 (929)
Q Consensus       903 ~~ev~~  908 (929)
                      +.|+++
T Consensus       325 ~~~~l~  330 (345)
T 3hko_A          325 AMRALQ  330 (345)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            999976

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.97  E-value=9.4e-34  Score=316.85  Aligned_cols=228  Identities=23%  Similarity=0.292  Sum_probs=167.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|....                  ..+.+.+|++++++++|||||++++++.+.     ..
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-----~~  102 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEE-----SF  102 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS-----SE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-----CE
Confidence            4578999999999999999987641                  235688999999999999999999998543     35


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki~DfGla~  790 (929)
                      .|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.+   +.+||+|||+++
T Consensus       103 ~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~  179 (362)
T 2bdw_A          103 HYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAI  179 (362)
T ss_dssp             EEEEECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCB
T ss_pred             EEEEEecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcce
Confidence            899999999999998886433        3367899999999998   99999999999999865   459999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....       ......+||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+.... +...   .
T Consensus       180 ~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~--~~~~~~-i~~~---~  246 (362)
T 2bdw_A          180 EVNDS-------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYAQ-IKAG---A  246 (362)
T ss_dssp             CCTTC-------CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH-HHHT---C
T ss_pred             EecCC-------cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHHH-HHhC---C
Confidence            65321       112345799999999999999999999999999877766544333322111  111111 1110   0


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......+..+...+++++.+||+.||++||++.|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  284 (362)
T 2bdw_A          247 YDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  284 (362)
T ss_dssp             CCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence            00011111112223334777999999999999999864

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=7.4e-34  Score=307.97  Aligned_cols=240  Identities=25%  Similarity=0.335  Sum_probs=165.9

Q ss_pred             hhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ..++|+..+.||+|+||.||+|+..+               ..+.|.+|++++++++||||+++++++..      ...+
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~~~~   95 (289)
T 3og7_A           22 PDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA------PQLA   95 (289)
T ss_dssp             CTTSCEEEEEEEECSSEEEEEEESSSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSCE
T ss_pred             CccceeeeeEecCCCCeEEEEEEEcCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC------CccE
Confidence            35689999999999999999987652               24678999999999999999999997632      2369


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        96 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  172 (289)
T 3og7_A           96 IVTQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSR  172 (289)
T ss_dssp             EEEECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC-------
T ss_pred             EEEEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceecccccc
Confidence            9999999999999885322         3467899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ..    .........||+.|+|||++.   +..++.++||||+|++++++.....++...... ..+.............
T Consensus       173 ~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~~~~~~~  247 (289)
T 3og7_A          173 WS----GSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR-DQIIEMVGRGSLSPDL  247 (289)
T ss_dssp             ---------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCH-HHHHHHHHHTSCCCCT
T ss_pred             cc----ccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchH-HHHHHHhcccccCcch
Confidence            11    111223457999999999987   667899999999998777765544444332220 0000000010000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                        . ......++.+.+++.+||+.||++|||++|++++|+++.+
T Consensus       248 --~-~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~  288 (289)
T 3og7_A          248 --S-KVRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR  288 (289)
T ss_dssp             --T-SSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred             --h-hccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence              0 0000111223337779999999999999999999998753

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.97  E-value=6.6e-33  Score=319.45  Aligned_cols=232  Identities=25%  Similarity=0.336  Sum_probs=174.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .++|+..+.||+|+||.||+|++.+            ..+.|.+|++++++++|||||++++++...+    ...++|||
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~----~~~~iv~e  267 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK----GGLYIVTE  267 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCTTSHHHHHHHHHHHTCCCTTBCCEEEEEECTT----SCEEEEEE
T ss_pred             hHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCchHHHHHHHHHHHHHhccCCCEEEEEEEEEcCC----CceEEEEE
Confidence            4578888999999999999987652            3568999999999999999999999986533    24899999


Q ss_pred             ecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          728 FLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||++|+|.++++...          .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.....  
T Consensus       268 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~--  342 (450)
T 1k9a_A          268 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--  342 (450)
T ss_dssp             CCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC----
T ss_pred             ecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCccccccc--
Confidence            999999999987432          2367899999999998   9999999999999999999999999999854211  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                             .....+++.|+|||++.+..++.++||||+|++++++.. ...++...+.  .++. ..+.....      ..
T Consensus       343 -------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~~~-~~i~~~~~------~~  406 (450)
T 1k9a_A          343 -------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVV-PRVEKGYK------MD  406 (450)
T ss_dssp             -----------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT--TTHH-HHHHTTCC------CC
T ss_pred             -------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--HHHH-HHHHcCCC------CC
Confidence                   112357889999999999999999999999987777543 3333222211  1111 11111100      00


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .+...+..+.+++.+||+.||++|||++|+++.|+++...
T Consensus       407 ~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~  446 (450)
T 1k9a_A          407 APDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH  446 (450)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence            1111122233377799999999999999999999998753

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=4.4e-33  Score=303.27  Aligned_cols=240  Identities=23%  Similarity=0.316  Sum_probs=173.1

Q ss_pred             CCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ..|+..+.||+|+||.||+|+..                    ...+.+.+|+.++++++||||++++++|...+    .
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~  100 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE----G  100 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSS----S
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCC----C
Confidence            46778899999999999998743                    12357889999999999999999999976433    3


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus       101 ~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~  177 (298)
T 3f66_A          101 SPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARD  177 (298)
T ss_dssp             CCEEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCC
T ss_pred             ceEEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECccccccc
Confidence            4799999999999999986422         2356899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc-
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN-  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  870 (929)
                      .......  .........||+.|+|||.+.+..++.++||||+|++++++...    +..+.......+.. ....... 
T Consensus       178 ~~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~----~~~~~~~~~~~~~~-~~~~~~~~  250 (298)
T 3f66_A          178 MYDKEYY--SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR----GAPPYPDVNTFDIT-VYLLQGRR  250 (298)
T ss_dssp             CSCGGGC--BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT----SCCSSTTSCTTTHH-HHHHTTCC
T ss_pred             ccccchh--ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhC----CCCCCccCCHHHHH-HHHhcCCC
Confidence            6432111  11223345688999999999999999999999999776664331    11111111111110 0000000 


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .......++    .+.+++.+||+.||++|||++|++++|+++...+.
T Consensus       251 ~~~~~~~~~----~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  294 (298)
T 3f66_A          251 LLQPEYCPD----PLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI  294 (298)
T ss_dssp             CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSC
T ss_pred             CCCCccCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhc
Confidence            000111112    23337779999999999999999999999987654

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=2.2e-33  Score=305.54  Aligned_cols=249  Identities=16%  Similarity=0.128  Sum_probs=181.0

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||.||+|+..              ...+.+.+|+.+++++ +|+|++++++++..     ....++
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~~l   83 (298)
T 1csn_A            9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHNVL   83 (298)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEEEE
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCccHHHHHHHHHHHHHhcCCCCCeEEeecCC-----CceeEE
Confidence            357899999999999999999853              1235688999999999 79999999999843     335899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc-----eEEecccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT-----AKVGDFGLAR  790 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~-----~ki~DfGla~  790 (929)
                      ||||+ +|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.     +||+|||+++
T Consensus        84 v~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~  159 (298)
T 1csn_A           84 VIDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK  159 (298)
T ss_dssp             EEECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCE
T ss_pred             EEEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECcccc
Confidence            99999 999999987432         2367899999999998   9999999999999987776     9999999998


Q ss_pred             ccccccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      .......... .........||+.|+|||++.+..++.++||||+|++++++.....++..... ...+.+.........
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~  239 (298)
T 1csn_A          160 FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQS  239 (298)
T ss_dssp             ESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccC
Confidence            7643221111 11123456799999999999999999999999999888776665555443322 111111110000000


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      . .  .......+++.+.+++.+||+.||++||+++++++.|+++.+.....
T Consensus       240 ~-~--~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~~~  288 (298)
T 1csn_A          240 T-P--LRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLNTT  288 (298)
T ss_dssp             S-C--HHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             c-c--HHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcCCC
Confidence            0 0  00000111223334777999999999999999999999998875533

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=5.8e-34  Score=315.45  Aligned_cols=246  Identities=17%  Similarity=0.238  Sum_probs=179.8

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHcc-CCccccceeeec
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNV-RHRNLVKLITSC  711 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~  711 (929)
                      +++...++|+..+.||+|+||.||+|....                      ..+.+.+|+++++++ +||||+++++++
T Consensus        40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~  119 (333)
T 2i1m_A           40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC  119 (333)
T ss_dssp             GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred             cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            344556789999999999999999987431                      235688999999999 899999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc----------------------cccccHHHHHHHhhhCCCCCEEecCCC
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER----------------------KNELDITSALDYLHNDCEVPVVHSDLK  769 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk  769 (929)
                      ...+     ..++||||+++|+|.+++....                      .++.|++.||+|||+.   +|+|||||
T Consensus       120 ~~~~-----~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk  191 (333)
T 2i1m_A          120 THGG-----PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVA  191 (333)
T ss_dssp             CSSS-----SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred             ecCC-----ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcc
Confidence            6533     3799999999999999986321                      2356899999999998   99999999


Q ss_pred             CCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhh
Q 002376          770 PGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVE  848 (929)
Q Consensus       770 ~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~  848 (929)
                      |+||+++.++.+||+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++.. ...++
T Consensus       192 p~NIl~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~  267 (333)
T 2i1m_A          192 ARNVLLTNGHVAKIGDFGLARDIMNDS----NYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPY  267 (333)
T ss_dssp             GGGCEEEGGGEEEBCCCGGGCCGGGCT----TSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred             cceEEECCCCeEEECcccccccccccc----ceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999998653321    1111233467889999999999999999999999987776543 22222


Q ss_pred             hcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          849 SNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       849 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      .....  .+.+...........  .....++    .+.+++.+||+.||++|||+.|+++.|+++.+.....
T Consensus       268 ~~~~~--~~~~~~~~~~~~~~~--~~~~~~~----~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~~  331 (333)
T 2i1m_A          268 PGILV--NSKFYKLVKDGYQMA--QPAFAPK----NIYSIMQACWALEPTHRPTFQQICSFLQEQAQEDRRE  331 (333)
T ss_dssp             TTCCS--SHHHHHHHHHTCCCC--CCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccch--hHHHHHHHhcCCCCC--CCCCCCH----HHHHHHHHHhccChhhCcCHHHHHHHHHHHHHhhhcc
Confidence            11111  000001111111000  0111112    2233777999999999999999999999998876543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.97  E-value=1.8e-33  Score=306.26  Aligned_cols=229  Identities=20%  Similarity=0.270  Sum_probs=164.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------------------------------cHHHHHHHHHHHH
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------------------------------SWKSFIAECETLR  697 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------------------------------~~~~~~~E~~~l~  697 (929)
                      .++|+..+.||+|+||.||+|+...                                          ..+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            4689999999999999999986531                                          0246889999999


Q ss_pred             ccCCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       698 ~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +++||||+++++++.+.   .....++||||+++|+|.+++....       .++.|++.||+|||+.   +|+||||||
T Consensus        92 ~l~h~~iv~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp  165 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDP---NEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIKP  165 (298)
T ss_dssp             TCCCTTBCCEEEEEECS---SSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCG
T ss_pred             hCCCCCCCeEEEEEEcC---CCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCH
Confidence            99999999999998652   2346899999999999998765322       3467899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCC---CCCCCCCCCCcCCCCCcchhHHh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER---PSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      +||+++.++.+||+|||+++.....      ........||+.|+|||++.+..   ++.++||||+|++++++.....+
T Consensus       166 ~Nil~~~~~~~kl~Dfg~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  239 (298)
T 2zv2_A          166 SNLLVGEDGHIKIADFGVSNEFKGS------DALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCP  239 (298)
T ss_dssp             GGEEECTTSCEEECCCTTCEECSSS------SCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHEEECCCCCEEEecCCCccccccc------cccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCC
Confidence            9999999999999999999865321      11123457999999999998765   37889999999877665444333


Q ss_pred             hhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          848 ESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       848 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +....  ..... ..+...... .......++    .+++++.+||+.||++|||++|+++
T Consensus       240 f~~~~--~~~~~-~~~~~~~~~-~~~~~~~~~----~l~~li~~~l~~dp~~R~s~~e~l~  292 (298)
T 2zv2_A          240 FMDER--IMCLH-SKIKSQALE-FPDQPDIAE----DLKDLITRMLDKNPESRIVVPEIKL  292 (298)
T ss_dssp             SCCSS--HHHHH-HHHHHCCCC-CCSSSCCCH----HHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCcc--HHHHH-HHHhcccCC-CCCccccCH----HHHHHHHHHhhcChhhCCCHHHHhc
Confidence            22111  11110 111110000 000111112    2333777999999999999999864

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.97  E-value=6.5e-33  Score=317.41  Aligned_cols=230  Identities=22%  Similarity=0.198  Sum_probs=167.4

Q ss_pred             hhCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ..++|+..+.||+|+||.||+|...                  ...+.+.+|++++++++|||||++++++.+     ..
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-----~~   83 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-----EG   83 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-----SS
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-----CC
Confidence            3467899999999999999998654                  123568899999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec---CCCceEEeccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLA  789 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~---~~~~~ki~DfGla  789 (929)
                      ..|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++   +++.+||+|||+|
T Consensus        84 ~~~lv~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a  160 (444)
T 3soa_A           84 HHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLA  160 (444)
T ss_dssp             EEEEEECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSC
T ss_pred             EEEEEEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCcee
Confidence            5899999999999998886433        3467899999999998   999999999999998   5678999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +.....      .......+||++|||||++.+..++.++||||+|+++|++..+..++....  ..+.......+... 
T Consensus       161 ~~~~~~------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~--~~~~~~~i~~~~~~-  231 (444)
T 3soa_A          161 IEVEGE------QQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDED--QHRLYQQIKAGAYD-  231 (444)
T ss_dssp             BCCCTT------CCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHTCCC-
T ss_pred             EEecCC------CceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHhCCCC-
Confidence            865321      112234579999999999999999999999999987776544433322111  11111111111110 


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         .....+..++..+++++.+|++.||++|||+.|+++
T Consensus       232 ---~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~  267 (444)
T 3soa_A          232 ---FPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALK  267 (444)
T ss_dssp             ---CCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             ---CCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence               001111112223334777999999999999999986

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=1.3e-33  Score=314.20  Aligned_cols=249  Identities=16%  Similarity=0.121  Sum_probs=170.9

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------------------cHHHHHHHHHHHHccCCccccceeee
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------------------SWKSFIAECETLRNVRHRNLVKLITS  710 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------------------~~~~~~~E~~~l~~l~Hpniv~l~~~  710 (929)
                      ++|+..+.||+|+||.||+|+...                              ..+.+.+|+..++.++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            578899999999999999997642                              01235678888899999999999999


Q ss_pred             cccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC--c
Q 002376          711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--T  780 (929)
Q Consensus       711 ~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~--~  780 (929)
                      +.... .+....|+||||+ +|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++  .
T Consensus       117 ~~~~~-~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~  191 (345)
T 2v62_A          117 GLTEF-KGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKNPDQ  191 (345)
T ss_dssp             EEEES-SSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSSTTS
T ss_pred             ccccc-CCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCCCCc
Confidence            86632 2345689999999 999999987543        3367899999999998   999999999999999887  9


Q ss_pred             eEEeccccccccccccCCC-CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhh
Q 002376          781 AKVGDFGLARFLLERVDNQ-SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQ  857 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~  857 (929)
                      +||+|||+|+.+....... ..........||+.|+|||++.+..++.++||||+|++++++.....++.....  ....
T Consensus       192 ~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~  271 (345)
T 2v62_A          192 VYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQ  271 (345)
T ss_dssp             EEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHH
T ss_pred             EEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHH
Confidence            9999999998764332211 111222455799999999999999999999999999888776665554432111  0000


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ..........+........ ...++.-+.+++.+||+.||++||+++++++.|+++..
T Consensus       272 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~  328 (345)
T 2v62_A          272 TAKTNLLDELPQSVLKWAP-SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI  328 (345)
T ss_dssp             HHHHHHHHTTTHHHHHHSC-TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred             HHHHhhcccccHHHHhhcc-ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence            0001111100000000000 00111223337779999999999999999999998644

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.97  E-value=1e-33  Score=314.89  Aligned_cols=226  Identities=25%  Similarity=0.265  Sum_probs=164.5

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|+..++||+|+||+||+|+...                   ..+.+.+|..+++.+ +|||||++++++.+     
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-----   95 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT-----   95 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe-----
Confidence            35689999999999999999987651                   234577899999988 79999999999854     


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ....|+||||+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        96 ~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~  172 (353)
T 3txo_A           96 PDRLFFVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCK  172 (353)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEcccccee
Confidence            335899999999999999886432        3467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ....      ........+||+.|||||++.+..++.++||||+|+++|++.....++....  ..++......    ..
T Consensus       173 ~~~~------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i~~----~~  240 (353)
T 3txo_A          173 EGIC------NGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAEN--EDDLFEAILN----DE  240 (353)
T ss_dssp             CSCC---------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH----CC
T ss_pred             eccc------CCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCC--HHHHHHHHHc----CC
Confidence            5321      1122345689999999999998899999999999987777655444332221  1111111111    11


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCH------HHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI------REALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~------~ev~~  908 (929)
                      ......    +...+.+++.+|++.||++||++      +|+++
T Consensus       241 ~~~p~~----~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~  280 (353)
T 3txo_A          241 VVYPTW----LHEDATGILKSFMTKNPTMRLGSLTQGGEHAILR  280 (353)
T ss_dssp             CCCCTT----SCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHT
T ss_pred             CCCCCC----CCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhh
Confidence            111111    22223347779999999999998      66664

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=3e-33  Score=301.79  Aligned_cols=236  Identities=21%  Similarity=0.246  Sum_probs=164.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||.||+|.+..                    ..+.|.+|+.++++++||||+++++++.+      
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------   87 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE------   87 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS------
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc------
Confidence            4578889999999999999987531                    13568899999999999999999999843      


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~  164 (281)
T 1mp8_A           88 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSR  164 (281)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             CccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECcccccc
Confidence            12699999999999999986432         2357899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ......     ........+|+.|+|||++.+..++.++||||+|++++++.+ ...++.....  .+.. ..+....  
T Consensus       165 ~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~--~~~~-~~i~~~~--  234 (281)
T 1mp8_A          165 YMEDST-----YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVI-GRIENGE--  234 (281)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHH-HHHHTTC--
T ss_pred             ccCccc-----ccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH--HHHH-HHHHcCC--
Confidence            763221     111223457889999999998899999999999987766543 2222222111  0100 0111100  


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .......    .+..+.+++.+||+.||++|||+.|+++.|+++.+...
T Consensus       235 ~~~~~~~----~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~  279 (281)
T 1mp8_A          235 RLPMPPN----CPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK  279 (281)
T ss_dssp             CCCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCC----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhc
Confidence            0001111    12223337779999999999999999999999877643

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.97  E-value=6e-34  Score=314.51  Aligned_cols=247  Identities=22%  Similarity=0.230  Sum_probs=174.7

Q ss_pred             CCCCCceeecccCceeEEeccc----c----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNER----T----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~----~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||++++    .                ...+.+.+|++++++++||||+++++++...   ...
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~~~   99 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGP---GRQ   99 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS---SSC
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecC---CCc
Confidence            5788899999999999999873    1                1235689999999999999999999998642   334


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          100 SLRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred             eEEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccccccee
Confidence            5899999999999999986422         2357899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc-----C---hHH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL-----D---PEL  863 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~l  863 (929)
                      ......   .........||+.|+|||++.+..++.++||||+|++++++.....++...........     .   ..+
T Consensus       177 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  253 (327)
T 3lxl_A          177 LPLDKD---YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRL  253 (327)
T ss_dssp             CCTTCS---EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHH
T ss_pred             cccCCc---cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHH
Confidence            642211   11112334688999999999998999999999999887776554333221111100000     0   011


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ........  ...........+.+++.+||+.||++|||++|+++.|+++.....
T Consensus       254 ~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~  306 (327)
T 3lxl_A          254 LELLEEGQ--RLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR  306 (327)
T ss_dssp             HHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred             HHHhhccc--CCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence            11110000  000011112223337779999999999999999999999877644

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.9e-34  Score=313.84  Aligned_cols=223  Identities=25%  Similarity=0.309  Sum_probs=166.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...+.||+|+||+||+|++..                   ..+.+.+|+++++.++||||+++++++...     .
T Consensus         8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-----~   82 (336)
T 3h4j_B            8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP-----T   82 (336)
T ss_dssp             ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS-----S
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-----C
Confidence            4689999999999999999998641                   124688999999999999999999998653     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+ +|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++..
T Consensus        83 ~~~lv~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~  158 (336)
T 3h4j_B           83 DIVMVIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIM  158 (336)
T ss_dssp             EEEEEECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTT
T ss_pred             EEEEEEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceec
Confidence            489999999 789988875332        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       ......+||+.|+|||++.+..+ +.++||||+|++++++..+..++....  ..+........    ..
T Consensus       159 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~--~~~~~~~i~~~----~~  225 (336)
T 3h4j_B          159 TDG-------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEF--IPNLFKKVNSC----VY  225 (336)
T ss_dssp             TTS-------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSS--STTCBCCCCSS----CC
T ss_pred             cCC-------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCcc--HHHHHHHHHcC----CC
Confidence            321       11234579999999999988876 789999999987776655444332211  11111110000    00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    .++.++..+++++.+|++.||++|||++|+++
T Consensus       226 ~----~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  258 (336)
T 3h4j_B          226 V----MPDFLSPGAQSLIRRMIVADPMQRITIQEIRR  258 (336)
T ss_dssp             C----CCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred             C----CcccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence            0    00111222334777999999999999999975

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.97  E-value=4.4e-33  Score=305.48  Aligned_cols=222  Identities=19%  Similarity=0.244  Sum_probs=168.1

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||+||+++..                   ...+.+.+|+.+++.++||||+++++++.+     ..
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~~   79 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----AQ   79 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----SS
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-----CC
Confidence            357889999999999999998764                   123567789999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.++++...        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        80 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~  156 (318)
T 1fot_A           80 QIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYV  156 (318)
T ss_dssp             EEEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEEC
T ss_pred             EEEEEEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceec
Confidence            5899999999999999986432        3467899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..         .....+||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+.......    ....
T Consensus       157 ~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~i~~----~~~~  221 (318)
T 1fot_A          157 PD---------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--MKTYEKILN----AELR  221 (318)
T ss_dssp             SS---------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHH----CCCC
T ss_pred             CC---------ccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH--HHHHHHHHh----CCCC
Confidence            31         12345799999999999999999999999999877776554433322111  111111111    1111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      ....    +..-+++++.+|++.||++||     +++|+++
T Consensus       222 ~p~~----~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~  258 (318)
T 1fot_A          222 FPPF----FNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN  258 (318)
T ss_dssp             CCTT----SCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCC----CCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence            1111    122233477799999999999     8888873

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.97  E-value=1.8e-33  Score=316.52  Aligned_cols=228  Identities=21%  Similarity=0.231  Sum_probs=168.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+|....                ....+.+|++++++++|||||++++++.+     ....+
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~~~  124 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEMV  124 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-----CCEEE
Confidence            4679999999999999999987641                23468899999999999999999999854     34589


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC--CCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE--EMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~--~~~~ki~DfGla~~~  792 (929)
                      +||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+|||++.  ++.+||+|||+++..
T Consensus       125 lv~E~~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~  201 (387)
T 1kob_A          125 LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKL  201 (387)
T ss_dssp             EEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceec
Confidence            9999999999999886432         2367899999999998   9999999999999974  578999999999875


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.+.. +..   ....
T Consensus       202 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~--~~~~~~-i~~---~~~~  268 (387)
T 1kob_A          202 NPD-------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQN-VKR---CDWE  268 (387)
T ss_dssp             CTT-------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHH-HHH---CCCC
T ss_pred             CCC-------cceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH--HHHHHH-HHh---CCCC
Confidence            321       122345799999999999999999999999999877776554433322111  111111 111   0000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........+...+++++.+||+.||++|||++|+++
T Consensus       269 ~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  304 (387)
T 1kob_A          269 FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  304 (387)
T ss_dssp             CCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence            000111112222334777999999999999999986

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.97  E-value=1.2e-33  Score=306.17  Aligned_cols=226  Identities=22%  Similarity=0.282  Sum_probs=169.0

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      ++|...+.||+|+||.||+|+..                       ...+.|.+|++++++++||||+++++++...+  
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--   85 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD--   85 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT--
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC--
Confidence            57888999999999999998543                       12467899999999999999999999996533  


Q ss_pred             CcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc--------
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT--------  780 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~--------  780 (929)
                         ..++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.        
T Consensus        86 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~  159 (289)
T 4fvq_A           86 ---ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPF  159 (289)
T ss_dssp             ---CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCE
T ss_pred             ---CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccce
Confidence               3699999999999999987433         2367899999999998   9999999999999998887        


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHH-hhhcCCchhhhc
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKW-VESNLPENVLQV  858 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~-~~~~~~~~~~~~  858 (929)
                      +||+|||+++....          .....||+.|+|||++.+ ..++.++||||+|++++++..... ++.....     
T Consensus       160 ~kl~Dfg~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~-----  224 (289)
T 4fvq_A          160 IKLSDPGISITVLP----------KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDS-----  224 (289)
T ss_dssp             EEECCCCSCTTTSC----------HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-----
T ss_pred             eeeccCcccccccC----------ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccch-----
Confidence            99999999875421          123468999999999988 679999999999987776544211 1111110     


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                        .................++.+.    +++.+||+.||++|||++|+++.|+++..
T Consensus       225 --~~~~~~~~~~~~~~~~~~~~l~----~li~~~l~~dp~~Rps~~~ll~~l~~l~~  275 (289)
T 4fvq_A          225 --QRKLQFYEDRHQLPAPKAAELA----NLINNCMDYEPDHRPSFRAIIRDLNSLFT  275 (289)
T ss_dssp             --HHHHHHHHTTCCCCCCSSCTTH----HHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred             --HHHHHHhhccCCCCCCCCHHHH----HHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence              0111111111111111112222    36679999999999999999999999765

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.97  E-value=7.8e-33  Score=308.39  Aligned_cols=227  Identities=22%  Similarity=0.221  Sum_probs=166.9

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.|+..+.||+|+||.||+|....                     ..+.+.+|+.+++.++|||||++++++.+.     
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----   98 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD-----   98 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----
Confidence            468889999999999999986541                     246789999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc---eEEe
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT---AKVG  784 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~---~ki~  784 (929)
                      ...|+||||+++|+|.+++...            ..++.||+.||+|||+.   +|+||||||+|||++.++.   +||+
T Consensus        99 ~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~  175 (351)
T 3c0i_A           99 GMLYMVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLG  175 (351)
T ss_dssp             TEEEEEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEEC
T ss_pred             CEEEEEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEe
Confidence            3589999999999998877532            12357999999999998   9999999999999986654   9999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |||+++.....      .......+||+.|+|||++.+..++.++||||+|+++|++.....++....+   +.......
T Consensus       176 Dfg~a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~i~~  246 (351)
T 3c0i_A          176 GFGVAIQLGES------GLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE---RLFEGIIK  246 (351)
T ss_dssp             CCTTCEECCTT------SCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH---HHHHHHHH
T ss_pred             cCcceeEecCC------CeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH---HHHHHHHc
Confidence            99999876321      1112345799999999999999999999999999877765544333322111   11111111


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    ........+..++..+++++.+||+.||++|||+.|+++
T Consensus       247 ~----~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~  286 (351)
T 3c0i_A          247 G----KYKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALN  286 (351)
T ss_dssp             T----CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             C----CCCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            1    111111111112233344777999999999999999974

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=2.5e-31  Score=296.77  Aligned_cols=294  Identities=18%  Similarity=0.243  Sum_probs=198.9

Q ss_pred             CCCCCCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCC
Q 002376           51 YWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNN  130 (929)
Q Consensus        51 ~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  130 (929)
                      .|.+...+|.|.|+ |+          +++++++ .+|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus        22 ~~~~~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~   87 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG   87 (353)
T ss_dssp             -----CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             CCCccCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence            46566778999987 64          3455666 6777665  589999999999998777799999999999999999


Q ss_pred             CCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecc
Q 002376          131 LQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN  210 (929)
Q Consensus       131 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N  210 (929)
                      +++..|..|.++++|++|+|++|+++ .++...|.++++|++|+|++|++++ +|.      ...|..+++|++|++++|
T Consensus        88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~-l~~------~~~~~~l~~L~~L~l~~n  159 (353)
T 2z80_A           88 INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKT-LGE------TSLFSHLTKLQILRVGNM  159 (353)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSS-SCS------SCSCTTCTTCCEEEEEES
T ss_pred             cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcc-cCc------hhhhccCCCCcEEECCCC
Confidence            99888889999999999999999998 6888879999999999999998853 221      135788999999999999


Q ss_pred             -cCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCc
Q 002376          211 -RLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTL  289 (929)
Q Consensus       211 -~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  289 (929)
                       .+....+..|.++++|++|++++|++++..|..+.. +++|++|++++|+++...+..+..+++|+.|++++|.+++..
T Consensus       160 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~  238 (353)
T 2z80_A          160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH  238 (353)
T ss_dssp             SSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred             ccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence             577777888999999999999999888544544433 556666666666654333333334555666666666555433


Q ss_pred             cCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCcccccc
Q 002376          290 PPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI  369 (929)
Q Consensus       290 p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~  369 (929)
                      +..+.                            .......++.++|++|.+++.                    .+. .+
T Consensus       239 ~~~l~----------------------------~~~~~~~l~~l~L~~~~l~~~--------------------~l~-~l  269 (353)
T 2z80_A          239 FSELS----------------------------TGETNSLIKKFTFRNVKITDE--------------------SLF-QV  269 (353)
T ss_dssp             CC----------------------------------CCCCCCEEEEESCBCCHH--------------------HHH-HH
T ss_pred             ccccc----------------------------cccccchhhccccccccccCc--------------------chh-hh
Confidence            21111                            112233455555555554431                    111 23


Q ss_pred             CCCCCCCCcccEEEeeCCCCCcccCcc-ccCCCCCCEEEecCCcCCCCC
Q 002376          370 PASIGRLRSLTLLDLSYNSISGEIPIE-IGQLQGLQVLGLAGNEIPGGI  417 (929)
Q Consensus       370 p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~  417 (929)
                      |..+..+++|++|+|++|+++. +|.. |..+++|++|+|++|.+.+..
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             HHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            4445555666666666666653 3333 456666666666666665443

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.97  E-value=8.5e-33  Score=298.60  Aligned_cols=236  Identities=22%  Similarity=0.336  Sum_probs=173.1

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||.||++++..              ..+++.+|++++++++||||+++++++...     ...++
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~l   96 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQ-----RPIFI   96 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----SSEEE
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCCEeeEEEEEecC-----CCeEE
Confidence            34578889999999999999987652              357899999999999999999999998543     34899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.....
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~  173 (283)
T 3gen_A           97 ITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD  173 (283)
T ss_dssp             EECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH
T ss_pred             EEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccc
Confidence            999999999999986522         2367899999999998   9999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      ..     .......||+.|+|||++.+..++.++||||+|++++++.. ...++......  +. ...+.......  ..
T Consensus       174 ~~-----~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~--~~-~~~~~~~~~~~--~~  243 (283)
T 3gen_A          174 EY-----TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS--ET-AEHIAQGLRLY--RP  243 (283)
T ss_dssp             HH-----HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH--HH-HHHHHTTCCCC--CC
T ss_pred             cc-----ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh--HH-HHHHhcccCCC--CC
Confidence            11     11223357888999999998999999999999987776543 33333322210  00 01111110000  00


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ...++    .+.+++.+||+.||++|||++|+++.|+++...
T Consensus       244 ~~~~~----~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~  281 (283)
T 3gen_A          244 HLASE----KVYTIMYSCWHEKADERPTFKILLSNILDVMDE  281 (283)
T ss_dssp             TTCCH----HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CcCCH----HHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence            11112    233377799999999999999999999998753

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=7e-33  Score=304.00  Aligned_cols=236  Identities=22%  Similarity=0.278  Sum_probs=174.2

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++|...+.||+|+||.||+|+..                      ...+.+.+|++++++++||||+++++++...+  
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~--   99 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG--   99 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSS--
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCC--
Confidence            467888999999999999998641                      12357889999999999999999999986533  


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------------------------------cccccHHHHHHHhhhCCCCCEEe
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------------------------------KNELDITSALDYLHNDCEVPVVH  765 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------------------------------~~~~~ia~aL~yLH~~~~~~iiH  765 (929)
                         ..++||||+++|+|.+++...+                                .++.|++.||+|||+.   +|+|
T Consensus       100 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH  173 (314)
T 2ivs_A          100 ---PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVH  173 (314)
T ss_dssp             ---SCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred             ---ceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcc
Confidence               3799999999999999986432                                2356899999999998   9999


Q ss_pred             cCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-h
Q 002376          766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-V  844 (929)
Q Consensus       766 rDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~  844 (929)
                      |||||+||++++++.+||+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++.. .
T Consensus       174 ~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g  249 (314)
T 2ivs_A          174 RDLAARNILVAEGRKMKISDFGLSRDVYEED----SYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLG  249 (314)
T ss_dssp             CCCSGGGEEEETTTEEEECCCTTCEECTTTS----CEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             cccchheEEEcCCCCEEEccccccccccccc----cceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999999999999998653221    1111233467889999999999889999999999987776543 3


Q ss_pred             HHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          845 KWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..++.....  .+.. ..+.....  ......    +...+.+++.+||+.||++||+++|+++.|+++...
T Consensus       250 ~~p~~~~~~--~~~~-~~~~~~~~--~~~~~~----~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~  312 (314)
T 2ivs_A          250 GNPYPGIPP--ERLF-NLLKTGHR--MERPDN----CSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVK  312 (314)
T ss_dssp             CCSSTTCCG--GGHH-HHHHTTCC--CCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCH--HHHH-HHhhcCCc--CCCCcc----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhh
Confidence            222221111  1110 11111000  001111    122233377799999999999999999999998653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=2.3e-33  Score=311.87  Aligned_cols=251  Identities=22%  Similarity=0.270  Sum_probs=178.0

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC-----------cHHHHHHHHHHHHc--cCCccccceeeecccCCCCCcceEE
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRN--VRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~--l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ....++|+..+.||+|+||.||+|++.+           ..+.+.+|++++..  ++||||+++++++..... .....+
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~-~~~~~~  116 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDNG-TWTQLW  116 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS-SCCCEE
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCchhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCC-ccceeE
Confidence            3445689999999999999999987652           34678889999887  789999999999866442 223589


Q ss_pred             EEEEecCCCCccccccccc-------cccccHHHHHHHhh--------hCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-------KNELDITSALDYLH--------NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH--------~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      +||||+++|+|.++++...       .++.|++.||+|||        +.   +|+||||||+||+++.++.+||+|||+
T Consensus       117 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg~  193 (342)
T 1b6c_B          117 LVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIADLGL  193 (342)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred             EEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCCEEEEECCC
Confidence            9999999999999986432       34679999999999        55   899999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCC------CCCCCCCCCCcCCCCCcchh----------HHhhhcCC
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER------PSTAGDVPTSESFAGEFNIV----------KWVESNLP  852 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DV~s~g~~~~~~~~~----------~~~~~~~~  852 (929)
                      ++........  .........||+.|+|||++.+..      ++.++||||+|++++++...          ..++....
T Consensus       194 ~~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~  271 (342)
T 1b6c_B          194 AVRHDSATDT--IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLV  271 (342)
T ss_dssp             CEEEETTTTE--EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTS
T ss_pred             ceeccccccc--cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccC
Confidence            9876432110  000123457999999999988763      34789999999888776544          22221111


Q ss_pred             chhhhccChHHHHhhcc-----cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          853 ENVLQVLDPELRQLMTS-----NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       853 ~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .  .+.....+......     .........++ ...+.+++.+||+.||++|||++||++.|+++.++
T Consensus       272 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~  337 (342)
T 1b6c_B          272 P--SDPSVEEMRKVVCEQKLRPNIPNRWQSCEA-LRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ  337 (342)
T ss_dssp             C--SSCCHHHHHHHHTTSCCCCCCCGGGGTSHH-HHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred             c--CcccHHHHHHHHHHHHhCCCCcccccchhH-HHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence            0  00000111111100     00000011122 23334488899999999999999999999998765

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=2.9e-33  Score=311.14  Aligned_cols=242  Identities=21%  Similarity=0.269  Sum_probs=176.2

Q ss_pred             HHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeeccc
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSS  713 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~  713 (929)
                      +....++|+..+.||+|+||.||+|++.+                      ..+.|.+|++++++++||||+++++++..
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            33456789999999999999999987631                      13578899999999999999999999965


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc--------------------------------cccccHHHHHHHhhhCCCC
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER--------------------------------KNELDITSALDYLHNDCEV  761 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------------------------------~~~~~ia~aL~yLH~~~~~  761 (929)
                      .+     ..++||||+++|+|.++++...                                .++.||+.||+|||+.   
T Consensus       122 ~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---  193 (343)
T 1luf_A          122 GK-----PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---  193 (343)
T ss_dssp             SS-----SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---
T ss_pred             CC-----ceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---
Confidence            33     3799999999999999986421                                1367899999999998   


Q ss_pred             CEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCc
Q 002376          762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEF  841 (929)
Q Consensus       762 ~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~  841 (929)
                      +|+||||||+||++++++.+||+|||+++.......    ........||+.|+|||++.+..++.++||||+|++++++
T Consensus       194 ~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el  269 (343)
T 1luf_A          194 KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY----YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI  269 (343)
T ss_dssp             TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC----BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CeecCCCCcceEEECCCCeEEEeecCCCcccccCcc----ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHH
Confidence            999999999999999999999999999987632211    1112334689999999999999999999999999877765


Q ss_pred             ch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          842 NI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       842 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .. ...++.....  .     .+.........  ...++..+..+.+++.+||+.||++||++.|+++.|+++.+.+.
T Consensus       270 ~t~g~~p~~~~~~--~-----~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~  338 (343)
T 1luf_A          270 FSYGLQPYYGMAH--E-----EVIYYVRDGNI--LACPENCPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE  338 (343)
T ss_dssp             HTTTCCTTTTSCH--H-----HHHHHHHTTCC--CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred             HhcCCCcCCCCCh--H-----HHHHHHhCCCc--CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence            43 3222222111  1     11111100000  00001111223337779999999999999999999999876654

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=4.2e-33  Score=307.16  Aligned_cols=245  Identities=19%  Similarity=0.243  Sum_probs=167.5

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      ....++|+..+.||+|+||.||+|++..                     ..+.|.+|++++++++||||+++++++....
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   98 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR   98 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence            3445689999999999999999987541                     2356889999999999999999999987643


Q ss_pred             CCC-cceEEEEEEecCCCCccccccccc--------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc
Q 002376          716 SKN-MEFLALVYEFLSNGSLGDWIHGER--------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT  780 (929)
Q Consensus       716 ~~~-~~~~~lV~e~~~~gsL~~~l~~~~--------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~  780 (929)
                      ..+ ....++||||+++|+|.+++...+              .++.|++.||+|||+.   +|+||||||+||++++++.
T Consensus        99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~  175 (323)
T 3qup_A           99 AKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMT  175 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSC
T ss_pred             cccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCC
Confidence            211 123489999999999999885321              2367899999999998   9999999999999999999


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhcc
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVL  859 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~  859 (929)
                      +||+|||+++.......    ........+|+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+..
T Consensus       176 ~kl~Dfg~a~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~--~~~~  249 (323)
T 3qup_A          176 VCVADFGLSRKIYSGDY----YRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN--AEIY  249 (323)
T ss_dssp             EEECCCCC---------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHH
T ss_pred             EEEeecccccccccccc----ccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh--HHHH
Confidence            99999999986532211    111223457889999999999999999999999987777544 3333322221  1111


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .. +....  ........++    .+.+++.+||+.||++|||+.|+++.|+++....
T Consensus       250 ~~-~~~~~--~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~  300 (323)
T 3qup_A          250 NY-LIGGN--RLKQPPECME----EVYDLMYQCWSADPKQRPSFTCLRMELENILGHL  300 (323)
T ss_dssp             HH-HHTTC--CCCCCTTCCH----HHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred             HH-HhcCC--CCCCCCccCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHh
Confidence            00 11000  0011111112    2233777999999999999999999999987753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=2.5e-33  Score=323.54  Aligned_cols=238  Identities=21%  Similarity=0.304  Sum_probs=176.9

Q ss_pred             HHhhCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +...++|+..+.||+|+||.||+|.+.              ...++|.+|++++++++|||||++++++..      ...
T Consensus       184 ~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~------~~~  257 (454)
T 1qcf_A          184 EIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVTK------EPI  257 (454)
T ss_dssp             BCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSC
T ss_pred             eechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCCccHHHHHHHHHHHhhCCCCCEeeEEEEEeC------Ccc
Confidence            344567888999999999999999764              235789999999999999999999999852      237


Q ss_pred             EEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ++|||||++|+|.++++...          .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       258 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~  334 (454)
T 1qcf_A          258 YIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVI  334 (454)
T ss_dssp             EEEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGB
T ss_pred             EEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEc
Confidence            99999999999999987431          2367999999999998   9999999999999999999999999999875


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....     ........+|+.|+|||++.+..++.++||||+|++++++.. ...++.....  .++.. .+....... 
T Consensus       335 ~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~--~~~~~-~i~~~~~~~-  405 (454)
T 1qcf_A          335 EDNE-----YTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSN--PEVIR-ALERGYRMP-  405 (454)
T ss_dssp             CCHH-----HHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--HHHHH-HHHHTCCCC-
T ss_pred             CCCc-----eeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCH--HHHHH-HHHcCCCCC-
Confidence            3211     011122356889999999998999999999999987776544 3333222111  11111 111111000 


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                       ...   .+...+ .+++.+||+.||++||||++|+++|+++....
T Consensus       406 -~~~---~~~~~l-~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~  446 (454)
T 1qcf_A          406 -RPE---NCPEEL-YNIMMRCWKNRPEERPTFEYIQSVLDDFYTAT  446 (454)
T ss_dssp             -CCT---TSCHHH-HHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred             -CCC---CCCHHH-HHHHHHHccCChhHCcCHHHHHHHHHHHHhcc
Confidence             001   111223 33778999999999999999999999976543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.97  E-value=1.1e-32  Score=303.39  Aligned_cols=230  Identities=20%  Similarity=0.221  Sum_probs=168.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||+||+|+...                 ..+.+.+|+.+++.++|||||++++++.+.     ...
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----~~~   80 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-----NIQ   80 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECS-----SEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecC-----CeE
Confidence            3689999999999999999986541                 135688999999999999999999998543     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.+..
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~  157 (323)
T 3tki_A           81 YLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (323)
T ss_dssp             EEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             EEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceecc
Confidence            99999999999999987442        3467999999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..    ........+||+.|+|||++.+..+ +.++||||+|++++++.....++......     ............. 
T Consensus       158 ~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~-----~~~~~~~~~~~~~-  227 (323)
T 3tki_A          158 NN----RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS-----CQEYSDWKEKKTY-  227 (323)
T ss_dssp             TT----EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTT-----SHHHHHHHTTCTT-
T ss_pred             CC----cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchH-----HHHHHHHhccccc-
Confidence            21    1111234579999999999988775 78999999998777665544443222111     1111111111000 


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ......+...+.+++.+|++.||++|||++|+++
T Consensus       228 -~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~  261 (323)
T 3tki_A          228 -LNPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (323)
T ss_dssp             -STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -CCccccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence             0001111222233777999999999999999975

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.97  E-value=4.9e-33  Score=320.99  Aligned_cols=178  Identities=24%  Similarity=0.282  Sum_probs=139.8

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||+||+|.+..                  ..+++.+|+.+++.++|||||++++++..... ....
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            5689999999999999999986541                  24568899999999999999999999865432 2235


Q ss_pred             eEEEEEEecCCCCccccccc------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHG------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ..|+||||+++ ++.+.+..      .+.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+....
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  216 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  216 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC-----
T ss_pred             eEEEEEeCCCC-CHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEeeeecCC
Confidence            68999999975 46555542      224578999999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .       ......+||++|+|||++.+..++.++||||+|++++++..+..++
T Consensus       217 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF  263 (464)
T 3ttj_A          217 S-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILF  263 (464)
T ss_dssp             C-------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             C-------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            1       1234468999999999999999999999999998888766554443

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=4.1e-33  Score=305.79  Aligned_cols=249  Identities=20%  Similarity=0.265  Sum_probs=170.5

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecc
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCS  712 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~  712 (929)
                      +++....++|...+.||+|+||.||+|+...                     ..+.+.+|+.++++++||||+++++++.
T Consensus        27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~  106 (313)
T 3brb_A           27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI  106 (313)
T ss_dssp             TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred             HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence            3344456688889999999999999875431                     1356889999999999999999999997


Q ss_pred             cCCCCCcceEEEEEEecCCCCcccccccc--------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGE--------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                      ..+.......++||||+++|+|.+++...              ..++.|++.||+|||+.   +|+||||||+||+++++
T Consensus       107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~  183 (313)
T 3brb_A          107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDD  183 (313)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTT
T ss_pred             eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCC
Confidence            65543344579999999999999988321              12367899999999998   99999999999999999


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~  857 (929)
                      +.+||+|||+++.......    ........|++.|+|||++.+..++.++||||+|++++++.. ...++.....  .+
T Consensus       184 ~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~--~~  257 (313)
T 3brb_A          184 MTVCVADFGLSKKIYSGDY----YRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN--HE  257 (313)
T ss_dssp             SCEEECSCSCC--------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GG
T ss_pred             CcEEEeecCcceecccccc----cCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH--HH
Confidence            9999999999986532211    111233467889999999999999999999999987766544 2222221111  11


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ..+ .+....  ........++   .+ .+++.+||+.||++|||++|+++.|+++.+..+
T Consensus       258 ~~~-~~~~~~--~~~~~~~~~~---~l-~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp  311 (313)
T 3brb_A          258 MYD-YLLHGH--RLKQPEDCLD---EL-YEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLP  311 (313)
T ss_dssp             HHH-HHHTTC--CCCCBTTCCH---HH-HHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC-
T ss_pred             HHH-HHHcCC--CCCCCccccH---HH-HHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcC
Confidence            111 111100  0001111112   22 337779999999999999999999999987654

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.97  E-value=6.1e-33  Score=303.95  Aligned_cols=174  Identities=25%  Similarity=0.355  Sum_probs=141.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|++..                 ..+.+.+|++++++++||||+++++++.+.     ...
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~   94 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSE-----RCL   94 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCS-----SCE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccC-----CEE
Confidence            4689999999999999999987641                 135688999999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++||||++ |+|.+++....         .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++...
T Consensus        95 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  170 (311)
T 3niz_A           95 TLVFEFME-KDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFG  170 (311)
T ss_dssp             EEEEECCS-EEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETT
T ss_pred             EEEEcCCC-CCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecC
Confidence            99999997 57877765432         2367899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ..      ........||+.|+|||++.+ ..++.++||||+|++++++.....++
T Consensus       171 ~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf  220 (311)
T 3niz_A          171 IP------VRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLF  220 (311)
T ss_dssp             SC------CC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CC------cccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCC
Confidence            21      112233578999999999876 46899999999998877765554433

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.97  E-value=1.7e-33  Score=311.99  Aligned_cols=227  Identities=24%  Similarity=0.311  Sum_probs=168.1

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      ....++|...+.||+|+||+||+|+...                   ..+.+.+|..++..+ +||||+++++++.+   
T Consensus        13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~---   89 (345)
T 1xjd_A           13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT---   89 (345)
T ss_dssp             ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC---
T ss_pred             CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe---
Confidence            4456789999999999999999997652                   234577899999887 99999999999854   


Q ss_pred             CCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                        ....|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        90 --~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~  164 (345)
T 1xjd_A           90 --KENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGM  164 (345)
T ss_dssp             --SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTT
T ss_pred             --CCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChh
Confidence              335899999999999999986422        3467999999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      |+.....      .......+||+.|+|||++.+..++.++||||+|+++|++..+..++....  ..++.. .+..   
T Consensus       165 a~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~-~i~~---  232 (345)
T 1xjd_A          165 CKENMLG------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD--EEELFH-SIRM---  232 (345)
T ss_dssp             CBCCCCT------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHH-HHHH---
T ss_pred             hhhcccC------CCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCC--HHHHHH-HHHh---
Confidence            9854211      112345689999999999999999999999999987777655443332211  111111 1111   


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHH-HHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIR-EAL  907 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-ev~  907 (929)
                      ......    ..+...+++++.+|++.||++||++. |+.
T Consensus       233 ~~~~~p----~~~s~~~~~li~~lL~~dp~~R~~~~~~i~  268 (345)
T 1xjd_A          233 DNPFYP----RWLEKEAKDLLVKLFVREPEKRLGVRGDIR  268 (345)
T ss_dssp             CCCCCC----TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred             CCCCCC----cccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence            111111    11222333477799999999999997 654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.97  E-value=2.7e-33  Score=314.32  Aligned_cols=230  Identities=23%  Similarity=0.218  Sum_probs=163.4

Q ss_pred             CceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          665 HENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       665 ~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ..+.||+|+||.||+|+..                ...+.|.+|++++++++|||||++++++...     ...++||||
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----~~~~lv~E~  167 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESK-----NDIVLVMEY  167 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----SEEEEEEEC
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-----CEEEEEEeC
Confidence            3578999999999998754                1346789999999999999999999999543     348999999


Q ss_pred             cCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee--cCCCceEEeccccccccccccC
Q 002376          729 LSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL--DEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       729 ~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl--~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      +++|+|.+++....         .++.||+.||+|||+.   +|+||||||+|||+  ++++.+||+|||+++.....  
T Consensus       168 ~~~~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~--  242 (373)
T 2x4f_A          168 VDGGELFDRIIDESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPR--  242 (373)
T ss_dssp             CTTCEEHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTT--
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCc--
Confidence            99999998875322         2357999999999998   99999999999999  67789999999999876322  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           ......+||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.+......    ........
T Consensus       243 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~--~~~~~~i~~~----~~~~~~~~  311 (373)
T 2x4f_A          243 -----EKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND--AETLNNILAC----RWDLEDEE  311 (373)
T ss_dssp             -----CBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHT----CCCSCSGG
T ss_pred             -----cccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhc----cCCCChhh
Confidence                 112234799999999999999999999999999877776554443322221  1111111111    00000001


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQE  915 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~  915 (929)
                      ...+...+.+++.+|++.||++|||++|+++  .+++...
T Consensus       312 ~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~~  351 (373)
T 2x4f_A          312 FQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHKL  351 (373)
T ss_dssp             GTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHHH
T ss_pred             hccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCCch
Confidence            1112223334777999999999999999986  5666543

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.97  E-value=4.3e-33  Score=309.23  Aligned_cols=226  Identities=25%  Similarity=0.278  Sum_probs=165.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||+||+++...                   ..+.+.+|+.+++++ +|||||++++++.+     ..
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-----~~   83 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----ES   83 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SS
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe-----CC
Confidence            578889999999999999987641                   134577899999988 89999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        84 ~~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~  160 (345)
T 3a8x_A           84 RLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG  160 (345)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCS
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEeccccccc
Confidence            5899999999999999886432        3467899999999998   9999999999999999999999999999853


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCch--hhhccChHHHHhhccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPEN--VLQVLDPELRQLMTSN  870 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~  870 (929)
                      ...      .......+||+.|+|||++.+..++.++||||+|+++|++.....++......  ........+.......
T Consensus       161 ~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~  234 (345)
T 3a8x_A          161 LRP------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEK  234 (345)
T ss_dssp             CCT------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHC
T ss_pred             cCC------CCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcC
Confidence            211      11234468999999999999999999999999998888776655444321110  0000001111111000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .   ...+..+...+++++.+||+.||++||++
T Consensus       235 ~---~~~p~~~s~~~~~li~~lL~~dP~~R~~~  264 (345)
T 3a8x_A          235 Q---IRIPRSLSVKAASVLKSFLNKDPKERLGC  264 (345)
T ss_dssp             C---CCCCTTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred             C---CCCCCCCCHHHHHHHHHHhcCCHhHCCCC
Confidence            0   01111122233347779999999999996

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=1.5e-33  Score=309.10  Aligned_cols=239  Identities=18%  Similarity=0.258  Sum_probs=175.9

Q ss_pred             hhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLD  715 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~  715 (929)
                      ..++|+..+.||+|+||.||+|++.                      ...+.+.+|+++++++ +||||+++++++...+
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            3467889999999999999998631                      1246788999999999 9999999999996543


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc--------------------------cccccHHHHHHHhhhCCCCCEEecCCC
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER--------------------------KNELDITSALDYLHNDCEVPVVHSDLK  769 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~--------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk  769 (929)
                           ..++||||+++|+|.+++...+                          .++.|++.||+|||+.   +|+|||||
T Consensus       101 -----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk  172 (313)
T 1t46_A          101 -----PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA  172 (313)
T ss_dssp             -----SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred             -----CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence                 3799999999999999986432                          1256899999999998   99999999


Q ss_pred             CCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhh
Q 002376          770 PGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVE  848 (929)
Q Consensus       770 ~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~  848 (929)
                      |+||+++.++.+||+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++.. ...++
T Consensus       173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~  248 (313)
T 1t46_A          173 ARNILLTHGRITKICDFGLARDIKNDS----NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPY  248 (313)
T ss_dssp             GGGEEEETTTEEEECCCGGGSCTTSCT----TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSS
T ss_pred             cceEEEcCCCCEEEccccccccccccc----cceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999998664321    1111233467889999999999999999999999987776543 33222


Q ss_pred             hcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          849 SNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       849 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ...+.      +.............  ......+..+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus       249 ~~~~~------~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  309 (313)
T 1t46_A          249 PGMPV------DSKFYKMIKEGFRM--LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISES  309 (313)
T ss_dssp             TTCCS------SHHHHHHHHHTCCC--CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred             Ccccc------hhHHHHHhccCCCC--CCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHh
Confidence            22111      11111111100000  000111122333777999999999999999999999987754

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.97  E-value=7.2e-33  Score=308.34  Aligned_cols=230  Identities=23%  Similarity=0.257  Sum_probs=156.4

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||.||+|+...              ..+.+.+|++++++++||||+++++++...     ...++
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----~~~~l  125 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTVDKKIVRTEIGVLLRLSHPNIIKLKEIFETP-----TEISL  125 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC----------CHHHHHCCCTTBCCEEEEEECS-----SEEEE
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccchhHHHHHHHHHHHHhCCCCCCcceeeeEecC-----CeEEE
Confidence            35679999999999999999988752              245688999999999999999999999543     34899


Q ss_pred             EEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEeccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLL  793 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~  793 (929)
                      ||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+++...
T Consensus       126 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~  202 (349)
T 2w4o_A          126 VLELVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE  202 (349)
T ss_dssp             EECCCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence            999999999999886433        3367899999999998   9999999999999975   8899999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..       .......||+.|+|||++.+..++.++||||+|++++++.....++......  +.   ............
T Consensus       203 ~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~--~~---~~~~i~~~~~~~  270 (349)
T 2w4o_A          203 HQ-------VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGD--QF---MFRRILNCEYYF  270 (349)
T ss_dssp             -----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCH--HH---HHHHHHTTCCCC
T ss_pred             cc-------cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCccc--HH---HHHHHHhCCCcc
Confidence            21       1123457999999999999999999999999998777765544333221110  00   011111111000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......+...+++++.+|++.||++|||+.|+++
T Consensus       271 ~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  305 (349)
T 2w4o_A          271 ISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQ  305 (349)
T ss_dssp             CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            00011112222334777999999999999999875

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.97  E-value=7.9e-33  Score=320.21  Aligned_cols=180  Identities=24%  Similarity=0.330  Sum_probs=135.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||+||+|++..                  ..+++.+|++++++++|||||++++++...+......
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            4689999999999999999986541                  2457889999999999999999999997655444566


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+ +|+|.++++...        .++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+|+...
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~  207 (458)
T 3rp9_A          132 LYVVLEIA-DSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLARTVD  207 (458)
T ss_dssp             EEEEECCC-SEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCBCTT
T ss_pred             EEEEEecc-ccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccchhcc
Confidence            89999998 578988876432        3467999999999998   99999999999999999999999999998764


Q ss_pred             cccCCCCC---------------------ccccceecccccccccccc-CCCCCCCCCCCCCCcCCCCCcch
Q 002376          794 ERVDNQSS---------------------ISSTHVFMGSIGYVPPEYG-LGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       794 ~~~~~~~~---------------------~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                      ........                     .......+||++|||||++ .+..++.++||||+||+++++..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          208 YPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             SCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             CccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            22111000                     0123456899999999976 45679999999999998888654

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.97  E-value=1e-33  Score=310.23  Aligned_cols=242  Identities=20%  Similarity=0.304  Sum_probs=165.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||++++..                   ..+.|.+|++++++++||||+++++++..... ...
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~-~~~   89 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETP-AGP   89 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEET-TEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCC-CCc
Confidence            4689999999999999999987531                   12468899999999999999999999865432 223


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.++++...        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.+
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~  166 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI  166 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC---
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcccc
Confidence            4699999999999999986432        3467899999999998   9999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      .....   .........||+.|+|||++.+..++.++||||+|+++|++.....++.....  .+........    ...
T Consensus       167 ~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~--~~~~~~~~~~----~~~  237 (311)
T 3ork_A          167 ADSGN---SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP--VSVAYQHVRE----DPI  237 (311)
T ss_dssp             ------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHC----CCC
T ss_pred             ccccc---ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh--HHHHHHHhcC----CCC
Confidence            43211   11222345799999999999999999999999999877776554433322211  1111111111    111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH-HHHHhhH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL-RRLKSSQ  914 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~-~~L~~~~  914 (929)
                      ........++.-+.+++.+||+.||++||++.+++ ..+.++.
T Consensus       238 ~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~  280 (311)
T 3ork_A          238 PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  280 (311)
T ss_dssp             CHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             CcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHHh
Confidence            10000111222233477799999999999766554 4555543

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=7.1e-33  Score=322.82  Aligned_cols=233  Identities=20%  Similarity=0.300  Sum_probs=173.8

Q ss_pred             hCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||.||+|++.               ...++|.+|++++++++|||||+++++|...+     ..++
T Consensus       219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~-----~~~l  293 (495)
T 1opk_A          219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP-----PFYI  293 (495)
T ss_dssp             GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----SCEE
T ss_pred             HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCCEeeEEEEEecCC-----cEEE
Confidence            456888899999999999998765               23578999999999999999999999996543     3799


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |||||++|+|.++++...          .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++....
T Consensus       294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~  370 (495)
T 1opk_A          294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTG  370 (495)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTT
T ss_pred             EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccC
Confidence            999999999999986422          2357999999999998   999999999999999999999999999987532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .     .........+++.|+|||++.+..++.++||||+|++++++.. ...++....  ..+     +...+....  
T Consensus       371 ~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~--~~~-----~~~~~~~~~--  436 (495)
T 1opk_A          371 D-----TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID--LSQ-----VYELLEKDY--  436 (495)
T ss_dssp             C-----CEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC--GGG-----HHHHHHTTC--
T ss_pred             C-----ceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC--HHH-----HHHHHHcCC--
Confidence            1     1111223356789999999998899999999999987777543 222222111  111     111111110  


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      +...+...+..+.+++.+||+.||++||||+|++++|+++.
T Consensus       437 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~  477 (495)
T 1opk_A          437 RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMF  477 (495)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHH
Confidence            00011111222333778999999999999999999999864

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.97  E-value=1.1e-33  Score=320.40  Aligned_cols=237  Identities=21%  Similarity=0.191  Sum_probs=173.3

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeec
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSC  711 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~  711 (929)
                      +.+++++...++|+..+.||+|+||+||+++...                   ..+.+.+|+.++..++|||||++++++
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            3456666778899999999999999999988651                   123477899999999999999999998


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      .+     ....|+||||+++|+|.++++...         .++.||+.||+|||+.   +|+||||||+|||++.++.+|
T Consensus       131 ~~-----~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vk  202 (412)
T 2vd5_A          131 QD-----ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIR  202 (412)
T ss_dssp             EC-----SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEE
T ss_pred             ee-----CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEE
Confidence            54     345899999999999999986422         2367899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccC-------CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-------GERPSTAGDVPTSESFAGEFNIVKWVESNLPE-N  854 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~  854 (929)
                      |+|||+|+.....     ........+||+.|||||++.       +..++.++||||+|+++|++..+..++..... .
T Consensus       203 L~DFGla~~~~~~-----~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~  277 (412)
T 2vd5_A          203 LADFGSCLKLRAD-----GTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAE  277 (412)
T ss_dssp             ECCCTTCEECCTT-----SCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             EeechhheeccCC-----CccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHH
Confidence            9999999865321     111123458999999999987       45789999999999888776655544432221 1


Q ss_pred             -hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCC---CCHHHHHH
Q 002376          855 -VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGR---IGIREALR  908 (929)
Q Consensus       855 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R---Ps~~ev~~  908 (929)
                       ..+++........   +.    ....++.-+++++.+|+. +|++|   |+++|+.+
T Consensus       278 ~~~~i~~~~~~~~~---p~----~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~  327 (412)
T 2vd5_A          278 TYGKIVHYKEHLSL---PL----VDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT  327 (412)
T ss_dssp             HHHHHHTHHHHCCC---C--------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred             HHHHHHhcccCcCC---Cc----cccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence             1111111100000   00    001122233447779999 99998   58888864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.97  E-value=6.1e-33  Score=308.47  Aligned_cols=222  Identities=21%  Similarity=0.219  Sum_probs=168.1

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+++..                   ...+.+.+|++++++++||||+++++++.+     ..
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~  114 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-----NS  114 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-----CC
Confidence            357889999999999999998764                   123567889999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       115 ~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~  191 (350)
T 1rdq_E          115 NLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRV  191 (350)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEEC
T ss_pred             EEEEEEcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceec
Confidence            5899999999999999987432        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..         .....+||+.|+|||++.+..++.++||||+|+++|++.....++....  ..++.......    ...
T Consensus       192 ~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~--~~~~~~~i~~~----~~~  256 (350)
T 1rdq_E          192 KG---------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ--PIQIYEKIVSG----KVR  256 (350)
T ss_dssp             SS---------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHC----CCC
T ss_pred             cC---------CcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC--HHHHHHHHHcC----CCC
Confidence            32         1234579999999999999999999999999987777655433332111  11111111111    111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ....    +..-+++++.+|++.||++||+     ++|+.+
T Consensus       257 ~p~~----~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~  293 (350)
T 1rdq_E          257 FPSH----FSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CCTT----CCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCC----CCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence            1111    1222334777999999999998     777764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=8.1e-33  Score=296.68  Aligned_cols=233  Identities=24%  Similarity=0.316  Sum_probs=165.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|++.+                  ..+.+.+|+++++.++||||+++++++...     ..
T Consensus         6 ~~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~   80 (271)
T 3dtc_A            6 FAELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE-----PN   80 (271)
T ss_dssp             TTSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-------
T ss_pred             hhheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-----Cc
Confidence            3578889999999999999987541                  135788999999999999999999999643     34


Q ss_pred             EEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC--------CCceEEecc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE--------EMTAKVGDF  786 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~--------~~~~ki~Df  786 (929)
                      .++||||+++|+|.++++..+       .++.|++.||+|||+....+|+||||||+||+++.        ++.+||+||
T Consensus        81 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           81 LCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred             eEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence            799999999999999886432       33678999999999982223999999999999986        678999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      |+++.....        ......||+.|+|||++.+..++.++||||+|++++++.....++......  +.. ......
T Consensus       161 g~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~--~~~-~~~~~~  229 (271)
T 3dtc_A          161 GLAREWHRT--------TKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL--AVA-YGVAMN  229 (271)
T ss_dssp             CC---------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH--HHH-HHHHTS
T ss_pred             Ccccccccc--------cccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH--HHH-HhhhcC
Confidence            999865321        112347899999999999999999999999998777665544443322210  000 000000


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                       .........    .++.+.+++.+||+.||++|||++|+++.|+++
T Consensus       230 -~~~~~~~~~----~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l  271 (271)
T 3dtc_A          230 -KLALPIPST----CPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI  271 (271)
T ss_dssp             -CCCCCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred             -CCCCCCCcc----cCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence             000000111    112233377799999999999999999999864

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.4e-32  Score=297.39  Aligned_cols=240  Identities=24%  Similarity=0.313  Sum_probs=174.5

Q ss_pred             CCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          662 NFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .|+..++||+|+||.||+|++.                    ...+.|.+|+.++++++||||+++++++.+.+.    .
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~----~   97 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEG----L   97 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSS----C
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCC----C
Confidence            4555689999999999998642                    123678899999999999999999999865332    3


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+.+|+|.++++...         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++..
T Consensus        98 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~  174 (298)
T 3pls_A           98 PHVLLPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDI  174 (298)
T ss_dssp             CEEEECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTT
T ss_pred             cEEEEecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccc
Confidence            589999999999999987422         2356899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc--
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN--  870 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  870 (929)
                      ......  .........||+.|+|||.+.+..++.++||||+|++++++.....+    +.....  ...+.......  
T Consensus       175 ~~~~~~--~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~----~~~~~~--~~~~~~~~~~~~~  246 (298)
T 3pls_A          175 LDREYY--SVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAP----PYRHID--PFDLTHFLAQGRR  246 (298)
T ss_dssp             TTGGGG--CSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCC----TTTTSC--GGGHHHHHHTTCC
T ss_pred             cCCccc--ccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCC----CCccCC--HHHHHHHhhcCCC
Confidence            332111  11122344689999999999999999999999999776665432211    111000  00111111100  


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      .......++    .+.+++.+||+.||++|||++|++++|+++.+.+...
T Consensus       247 ~~~~~~~~~----~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~  292 (298)
T 3pls_A          247 LPQPEYCPD----SLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGD  292 (298)
T ss_dssp             CCCCTTCCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSC
T ss_pred             CCCCccchH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhcc
Confidence            001111112    2333777999999999999999999999998886544

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.97  E-value=3.4e-33  Score=316.31  Aligned_cols=182  Identities=17%  Similarity=0.144  Sum_probs=146.8

Q ss_pred             hCCCCCceeeccc--CceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSG--SFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G--~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|  +||.||+|+...                  ..+.+.+|+.++++++|||||++++++.+.     
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~-----   98 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD-----   98 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC-----
Confidence            4679999999999  999999988651                  135677899999999999999999999643     


Q ss_pred             ceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ...++|||||++|+|.+++...          ..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.+
T Consensus        99 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~  175 (389)
T 3gni_B           99 NELWVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSN  175 (389)
T ss_dssp             TEEEEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGC
T ss_pred             CEEEEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccc
Confidence            3489999999999999998643          13367899999999998   9999999999999999999999999998


Q ss_pred             cccccccCC-CCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcchhHHhhh
Q 002376          790 RFLLERVDN-QSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFNIVKWVES  849 (929)
Q Consensus       790 ~~~~~~~~~-~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~~~~~~~~  849 (929)
                      ......... ..........+||+.|+|||++.+  ..++.++||||+|++++++.....++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~  238 (389)
T 3gni_B          176 LSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFK  238 (389)
T ss_dssp             EECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             eeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence            755322111 111112233479999999999988  579999999999988888766555543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=1.1e-33  Score=308.52  Aligned_cols=243  Identities=21%  Similarity=0.271  Sum_probs=172.8

Q ss_pred             CCCCCceeecccCceeEEeccc----c-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNER----T-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~----~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.|+..+.||+|+||.||+|++    .                 ...+.+.+|++++++++||||+++++++...+   .
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~   97 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDG---G   97 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC------
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCC---C
Confidence            3578889999999999999872    1                 12367899999999999999999999987532   2


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        98 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~  174 (302)
T 4e5w_A           98 NGIKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK  174 (302)
T ss_dssp             CCEEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred             ceEEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence            34799999999999999985322         3367899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc--------cChH
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV--------LDPE  862 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~  862 (929)
                      .......   .........||..|+|||++.+..++.++||||+|++++++..+..++..........        ....
T Consensus       175 ~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  251 (302)
T 4e5w_A          175 AIETDKE---YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTR  251 (302)
T ss_dssp             ECCTTCC---EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHH
T ss_pred             cccCCCc---ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHH
Confidence            7642211   1112233468889999999999999999999999988777654332211000000000        0001


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      +........  ....+..++..+.+++.+||+.||++|||++|++++|+++.
T Consensus       252 ~~~~~~~~~--~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll  301 (302)
T 4e5w_A          252 LVNTLKEGK--RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL  301 (302)
T ss_dssp             HHHHHHTTC--CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             HHHHHhccC--CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence            111110000  00000111222334777999999999999999999999874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.97  E-value=2.4e-33  Score=309.06  Aligned_cols=228  Identities=20%  Similarity=0.167  Sum_probs=147.1

Q ss_pred             ceeecccCceeEEeccccC-------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEEEecCC
Q 002376          666 ENLIGSGSFGSVLHNERTG-------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSN  731 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~~-------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~  731 (929)
                      .+.||+|+||.||+|.+..             ....+.+|+.+++.+. ||||+++++++.+     ....|+||||+++
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-----~~~~~lv~e~~~~   90 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRMEANTQKEITALKLCEGHPNIVKLHEVFHD-----QLHTFLVMELLNG   90 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGGHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SSEEEEEECCCCS
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhhhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-----CCEEEEEEEccCC
Confidence            4789999999999987652             2467889999999997 9999999999854     3458999999999


Q ss_pred             CCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC---ceEEeccccccccccccCCCC
Q 002376          732 GSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---TAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       732 gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~---~~ki~DfGla~~~~~~~~~~~  800 (929)
                      |+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++   .+||+|||+++.....     
T Consensus        91 ~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~-----  162 (325)
T 3kn6_A           91 GELFERIKKKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPD-----  162 (325)
T ss_dssp             CBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC------
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCC-----
Confidence            99999987433        3467899999999998   999999999999997665   8999999999865321     


Q ss_pred             CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH-hhcccchhhhhhhH
Q 002376          801 SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ-LMTSNESQTIQLHD  879 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~  879 (929)
                       .......+||+.|+|||++.+..++.++||||+|++++++.....++..............+.. ............+.
T Consensus       163 -~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  241 (325)
T 3kn6_A          163 -NQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWK  241 (325)
T ss_dssp             ----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHH
T ss_pred             -CCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCccccc
Confidence             1122345789999999999999999999999999877776554444432211000000011111 11111111111111


Q ss_pred             HHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          880 CLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       880 ~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                      .++..+++++.+|++.||++|||++|++
T Consensus       242 ~~s~~~~~li~~~L~~dP~~Rpt~~ell  269 (325)
T 3kn6_A          242 NVSQEAKDLIQGLLTVDPNKRLKMSGLR  269 (325)
T ss_dssp             TSCHHHHHHHHHHHCCCTTTCCCTTTST
T ss_pred             CCCHHHHHHHHHHCCCChhHCCCHHHHh
Confidence            1223334477799999999999999886

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.3e-33  Score=318.18  Aligned_cols=243  Identities=18%  Similarity=0.203  Sum_probs=179.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...++||+|+||.||+|++..                 ..+.+.+|++++++++||||+++++++...+   ....+
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~---~~~~~   85 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETT---TRHKV   85 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTT---TCCEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCC---CCeeE
Confidence            468889999999999999987651                 2467889999999999999999999986533   23579


Q ss_pred             EEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee----cCCCceEEecccc
Q 002376          724 LVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVGDFGL  788 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl----~~~~~~ki~DfGl  788 (929)
                      +||||+++|+|.++++...           .++.|++.||+|||+.   +|+||||||+||++    +.++.+||+|||+
T Consensus        86 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~  162 (396)
T 4eut_A           86 LIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGA  162 (396)
T ss_dssp             EEECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGG
T ss_pred             EEEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCC
Confidence            9999999999999987432           2357899999999998   99999999999999    7788899999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCC--------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG--------ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV  858 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~  858 (929)
                      ++.....       .......||+.|+|||++.+        ..++.++||||+|+++|++.....++.....  ...++
T Consensus       163 a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~  235 (396)
T 4eut_A          163 ARELEDD-------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEV  235 (396)
T ss_dssp             CEECCCG-------GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHH
T ss_pred             ceEccCC-------CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHH
Confidence            9876322       11233579999999999865        5678899999999888776665554432221  11111


Q ss_pred             cChHHHHhhcc-----------------cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          859 LDPELRQLMTS-----------------NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       859 ~~~~l~~~~~~-----------------~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      +...+.+....                 .........+.+...+.+++.+||+.||++||+++|+++.++++...
T Consensus       236 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~  310 (396)
T 4eut_A          236 MYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHR  310 (396)
T ss_dssp             HHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhc
Confidence            11111110000                 00001112234555666688899999999999999999999887653

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=1.5e-33  Score=302.21  Aligned_cols=232  Identities=18%  Similarity=0.245  Sum_probs=171.3

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ++|+..+.||+|+||.||+|++.+                ..+.|.+|+.++++++||||+++++++.+.+   ....++
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~~~~l   86 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPP---APHPTL   86 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTT---SSSCEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCC---CCCeEe
Confidence            578889999999999999997652                2357899999999999999999999986532   234799


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||+++|+|.++++...          .++.|++.||+|||+. .++|+||||||+||++++++.+||+|||++.... 
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~-  164 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTL-EPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ-  164 (271)
T ss_dssp             EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS-
T ss_pred             eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcC-CCceecCCCccceEEEcCCcceeEEeccceeeec-
Confidence            999999999999997543          2357899999999997 1229999999999999999999999999876421 


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCC---CCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPST---AGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                                .....||+.|+|||++.+..++.   ++||||+|++++++.....++.....  .+..........  ..
T Consensus       165 ----------~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--~~~~~~~~~~~~--~~  230 (271)
T 3kmu_A          165 ----------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSN--MEIGMKVALEGL--RP  230 (271)
T ss_dssp             ----------CTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCH--HHHHHHHHHSCC--CC
T ss_pred             ----------ccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccCh--HHHHHHHHhcCC--CC
Confidence                      12246899999999998776554   79999999877776554444332221  111001111100  00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ...    ..++..+.+++.+||+.||++|||++|+++.|+++.+
T Consensus       231 ~~~----~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~  270 (271)
T 3kmu_A          231 TIP----PGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD  270 (271)
T ss_dssp             CCC----TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred             CCC----CCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence            011    1112223347779999999999999999999998753

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.97  E-value=8.8e-33  Score=307.16  Aligned_cols=226  Identities=22%  Similarity=0.266  Sum_probs=167.9

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|+..+.||+|+||+||+|+...                   ..+.+.+|..++..+ +||+|+++++++.+     
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-----   92 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----   92 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC-----
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc-----
Confidence            35689999999999999999987652                   234577899999988 89999999999854     


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ....|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        93 ~~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~  169 (353)
T 2i0e_A           93 MDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK  169 (353)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred             CCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccc
Confidence            345899999999999999987432        3467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....      .......+||+.|||||++.+..++.++||||+|+++|++..+..++....  ..++......    ..
T Consensus       170 ~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i~~----~~  237 (353)
T 2i0e_A          170 ENIWD------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED--EDELFQSIME----HN  237 (353)
T ss_dssp             CCCCT------TCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHH----CC
T ss_pred             ccccC------CcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC--HHHHHHHHHh----CC
Confidence            53211      112345689999999999999999999999999987777655443332211  1111111111    11


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ....    ..+...+++++.+|++.||++||+     ++|+.+
T Consensus       238 ~~~p----~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~  276 (353)
T 2i0e_A          238 VAYP----KSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKE  276 (353)
T ss_dssp             CCCC----TTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHT
T ss_pred             CCCC----CCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhc
Confidence            1111    112223334777999999999996     456553

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.97  E-value=3e-32  Score=305.58  Aligned_cols=225  Identities=23%  Similarity=0.270  Sum_probs=166.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+++...                   ..+.+.+|+++++.++|||||++++++.+.     ..
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~-----~~   89 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDE-----ED   89 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----SE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----CE
Confidence            578899999999999999987642                   235688999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.+.
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~  166 (384)
T 4fr4_A           90 MFMVVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLP  166 (384)
T ss_dssp             EEEEECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeecc
Confidence            899999999999999987532        3467999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCC---CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcc
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG---ERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTS  869 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  869 (929)
                      ..       ......+||+.|||||++.+   ..++.++||||+|+++|++..+..++..... ...+.+    ......
T Consensus       167 ~~-------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~----~~~~~~  235 (384)
T 4fr4_A          167 RE-------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIV----HTFETT  235 (384)
T ss_dssp             TT-------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHH----HHHHHC
T ss_pred             CC-------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHH----HHHhhc
Confidence            21       12344689999999999874   4589999999999877776554444322111 111111    111001


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-HHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-IREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-~~ev~~  908 (929)
                      .......    +...+.+++.+||+.||++||+ ++++.+
T Consensus       236 ~~~~p~~----~s~~~~~li~~lL~~dP~~R~s~~~~l~~  271 (384)
T 4fr4_A          236 VVTYPSA----WSQEMVSLLKKLLEPNPDQRFSQLSDVQN  271 (384)
T ss_dssp             CCCCCTT----SCHHHHHHHHHHSCSSGGGSCCSHHHHHT
T ss_pred             ccCCCCc----CCHHHHHHHHHHhcCCHhHhcccHHHHHc
Confidence            1111111    1222333777999999999998 666653

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=4.7e-33  Score=320.85  Aligned_cols=240  Identities=24%  Similarity=0.320  Sum_probs=172.9

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||.||+|.+..              ..++|.+|++++++++||||+++++++..      ...++
T Consensus       182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~~i  255 (452)
T 1fmk_A          182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIYI  255 (452)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCEE
T ss_pred             ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------CceEE
Confidence            34578888999999999999987652              34689999999999999999999999854      23699


Q ss_pred             EEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||+++|+|.++++...          .++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++....
T Consensus       256 v~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~  332 (452)
T 1fmk_A          256 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIED  332 (452)
T ss_dssp             EECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC----
T ss_pred             EehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCC
Confidence            999999999999987321          2367899999999998   999999999999999999999999999987532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..     ........+|+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+     +........  
T Consensus       333 ~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~--~~-----~~~~i~~~~--  398 (452)
T 1fmk_A          333 NE-----YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--RE-----VLDQVERGY--  398 (452)
T ss_dssp             ---------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--HH-----HHHHHHTTC--
T ss_pred             Cc-----eecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCH--HH-----HHHHHHcCC--
Confidence            11     111223457889999999999999999999999987776544 2322221111  11     111111100  


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                      +...+...++.+.+++.+||+.||++|||++++++.|+++.....++.
T Consensus       399 ~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~~~~  446 (452)
T 1fmk_A          399 RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTEPQY  446 (452)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSCCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCCccc
Confidence            000011112223347779999999999999999999999865544333

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.97  E-value=6.1e-33  Score=300.47  Aligned_cols=241  Identities=20%  Similarity=0.260  Sum_probs=178.5

Q ss_pred             HHHhhCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          656 LRRATGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       656 l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++...++|+..+.||+|+||.||+|.+.               ...+.+.+|++++++++||||+++++++...     .
T Consensus         8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~   82 (288)
T 3kfa_A            8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE-----P   82 (288)
T ss_dssp             TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----S
T ss_pred             ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccC-----C
Confidence            3345678899999999999999998765               2346799999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ..++||||+++|+|.++++...          .++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+++
T Consensus        83 ~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~  159 (288)
T 3kfa_A           83 PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSR  159 (288)
T ss_dssp             SEEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGG
T ss_pred             CEEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccce
Confidence            3899999999999999986422          2356899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .....     .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+. ...+......
T Consensus       160 ~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~--~~~-~~~~~~~~~~  231 (288)
T 3kfa_A          160 LMTGD-----TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL--SQV-YELLEKDYRM  231 (288)
T ss_dssp             TSCSS-----SSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG--GGH-HHHHHTTCCC
T ss_pred             eccCC-----ccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HHH-HHHHhccCCC
Confidence            65321     1122233467889999999999999999999999977666543 2222211111  110 0111111000


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .  ....    .+..+.+++.+|++.||++|||++|++++|+++.+...
T Consensus       232 ~--~~~~----~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~~  274 (288)
T 3kfa_A          232 E--RPEG----CPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQESS  274 (288)
T ss_dssp             C--CCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             C--CCCC----CCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhcc
Confidence            0  0111    11223337779999999999999999999999887644

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=7.4e-33  Score=300.98  Aligned_cols=249  Identities=18%  Similarity=0.189  Sum_probs=177.6

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||.||+|++..              ..+++.+|+++++.++|++++..++++...    ....++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----~~~~~l   82 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYNVM   82 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---CCCHHHHHHHHHHHTTSTTCCCEEEEEEE----TTEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccchHHHHHHHHHHHhcCCCCCCeeeeecCC----CCceEE
Confidence            45789999999999999999998541              234688999999999999988888877542    345799


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEecccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFL  792 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla~~~  792 (929)
                      ||||+ +|+|.+++....         .++.|++.||+|||+.   +|+||||||+||++   ++++.+||+|||+++..
T Consensus        83 v~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~  158 (296)
T 4hgt_A           83 VMELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY  158 (296)
T ss_dssp             EEECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEEC
T ss_pred             EEEcc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCccceec
Confidence            99999 999999986321         3367899999999998   99999999999999   78899999999999876


Q ss_pred             ccccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhccc
Q 002376          793 LERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSN  870 (929)
Q Consensus       793 ~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  870 (929)
                      ........ .........||+.|+|||++.+..++.++||||+|++++++.....++..... ...+.+...........
T Consensus       159 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~  238 (296)
T 4hgt_A          159 RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP  238 (296)
T ss_dssp             BCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC
T ss_pred             cCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccch
Confidence            43221110 11122346799999999999999999999999999887776665555543322 11111111111100000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      .  . .....++.-+.+++.+||+.||++|||++|+++.|+++.+...
T Consensus       239 ~--~-~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~~  283 (296)
T 4hgt_A          239 I--E-VLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG  283 (296)
T ss_dssp             H--H-HHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             h--h-hhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhC
Confidence            0  0 0000111223337779999999999999999999999988765

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.97  E-value=3.7e-33  Score=306.59  Aligned_cols=174  Identities=24%  Similarity=0.399  Sum_probs=128.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|+...                 ..+.+.+|++++++++|||||++++++..     ....
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~   78 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-----ENKL   78 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-----TTEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-----CCeE
Confidence            4578899999999999999986641                 23578899999999999999999999854     3358


Q ss_pred             EEEEEecCCCCccccccccc--------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ++||||++ |+|.+++....              .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~  154 (317)
T 2pmi_A           79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGL  154 (317)
T ss_dssp             EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSS
T ss_pred             EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcc
Confidence            99999998 69988875321              2246899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ++.....      ........||+.|+|||++.+. .++.++||||+|++++++.....++
T Consensus       155 ~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf  209 (317)
T 2pmi_A          155 ARAFGIP------VNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLF  209 (317)
T ss_dssp             CEETTSC------CCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ceecCCC------cccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            9865321      1112334789999999999764 6899999999998877765554433

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.97  E-value=6.9e-33  Score=300.81  Aligned_cols=169  Identities=25%  Similarity=0.411  Sum_probs=137.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||+||+|++..                  ..+.+.+|+.++++++||||+++++++.+.     ...
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~   76 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD-----KKL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC-----CEE
Confidence            578899999999999999987641                  236788999999999999999999998543     358


Q ss_pred             EEEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++||||+++ ++.+++..         .+.++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        77 ~lv~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~  152 (292)
T 3o0g_A           77 TLVFEFCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFG  152 (292)
T ss_dssp             EEEEECCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecC
Confidence            999999975 55554432         123467999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~  844 (929)
                      ..      ........||+.|+|||++.+.. ++.++||||+|++++++...
T Consensus       153 ~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~  198 (292)
T 3o0g_A          153 IP------VRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANA  198 (292)
T ss_dssp             SC------CSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTT
T ss_pred             Cc------cccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHc
Confidence            21      11223457899999999998776 89999999999877765433

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.1e-32  Score=302.82  Aligned_cols=237  Identities=21%  Similarity=0.277  Sum_probs=168.7

Q ss_pred             CCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..+.||+|+||.||+|+...                     ..+.|.+|++++++++||||+++++++...     
T Consensus        44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----  118 (333)
T 1mqb_A           44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKY-----  118 (333)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSS-----
T ss_pred             HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecC-----
Confidence            456678999999999999986431                     234688999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++
T Consensus       119 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~  195 (333)
T 1mqb_A          119 KPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSR  195 (333)
T ss_dssp             SSEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             CCcEEEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcch
Confidence            34899999999999999986432         2367899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .......   .........+|+.|+|||++.+..++.++||||+|++++++.. ...++.....       ..+......
T Consensus       196 ~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-------~~~~~~~~~  265 (333)
T 1mqb_A          196 VLEDDPE---ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-------HEVMKAIND  265 (333)
T ss_dssp             ------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-------HHHHHHHHT
T ss_pred             hhccccc---cccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-------HHHHHHHHC
Confidence            7643211   1111223356889999999999999999999999987776543 3322222111       111111111


Q ss_pred             c--chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          870 N--ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       870 ~--~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      .  .......++    .+.+++.+||+.||++||+++|+++.|+++.+....
T Consensus       266 ~~~~~~~~~~~~----~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~~  313 (333)
T 1mqb_A          266 GFRLPTPMDCPS----AIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDS  313 (333)
T ss_dssp             TCCCCCCTTCBH----HHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGGG
T ss_pred             CCcCCCcccCCH----HHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcchh
Confidence            0  001111112    223377799999999999999999999998876553

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=1.6e-32  Score=296.10  Aligned_cols=237  Identities=24%  Similarity=0.268  Sum_probs=172.6

Q ss_pred             hhCCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|...+.||+|+||.||+|++.                    ...+.|.+|+.++++++||||+++++++...    
T Consensus        10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----   85 (281)
T 3cc6_A           10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEE----   85 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSS----
T ss_pred             cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCC----
Confidence            3467889999999999999998632                    1246788999999999999999999997532    


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                        ..++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        86 --~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  160 (281)
T 3cc6_A           86 --PTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLS  160 (281)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGG
T ss_pred             --CCEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCC
Confidence              2589999999999999986432         2357899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +......     ........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+.. ..+.... 
T Consensus       161 ~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~--~~~~-~~~~~~~-  231 (281)
T 3cc6_A          161 RYIEDED-----YYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN--KDVI-GVLEKGD-  231 (281)
T ss_dssp             GCC--------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG--GGHH-HHHHHTC-
T ss_pred             ccccccc-----ccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh--HHHH-HHHhcCC-
Confidence            8653221     111233467889999999998899999999999987776543 3333221111  1110 0111100 


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                       .......    ....+.+++.+||+.||++||++.|+++.|+++.+...
T Consensus       232 -~~~~~~~----~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~  276 (281)
T 3cc6_A          232 -RLPKPDL----CPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQMEK  276 (281)
T ss_dssp             -CCCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             -CCCCCCC----CCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhhh
Confidence             0000111    12223347779999999999999999999999877543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.97  E-value=3.8e-33  Score=305.70  Aligned_cols=217  Identities=27%  Similarity=0.257  Sum_probs=156.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..++||+|+||+||+|++..                  ....+.+|+..+.++ +|||||+++++|.+     ...
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~-----~~~  131 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEE-----GGI  131 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEe-----CCE
Confidence            578999999999999999987651                  123455666666555 89999999999954     345


Q ss_pred             EEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+ +|+|.+++....         .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus       132 ~~lv~e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~  207 (311)
T 3p1a_A          132 LYLQTELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVEL  207 (311)
T ss_dssp             EEEEEECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEEC
T ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeec
Confidence            89999999 679988876322         3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhccChHHHHhhcc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVLDPELRQLMTS  869 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~  869 (929)
                      ...       .......||++|+|||++.+ .++.++||||+|++++++....    ..+.   ...++.....      
T Consensus       208 ~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~----~~~~~~~~~~~~~~~~~------  269 (311)
T 3p1a_A          208 GTA-------GAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNM----ELPHGGEGWQQLRQGYL------  269 (311)
T ss_dssp             C-------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTC----CCCSSHHHHHHHTTTCC------
T ss_pred             ccC-------CCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCC----CCCCCccHHHHHhccCC------
Confidence            321       11233469999999999876 7999999999997766643321    1121   1111111000      


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          .......+...+.+++.+|++.||++|||++|+++
T Consensus       270 ----~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~  304 (311)
T 3p1a_A          270 ----PPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLA  304 (311)
T ss_dssp             ----CHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             ----CcccccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                00011112222334777999999999999999985

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.97  E-value=1.3e-32  Score=302.86  Aligned_cols=228  Identities=22%  Similarity=0.242  Sum_probs=169.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||.||+|+...                      ..+.+.+|+.++++++||||+++++++...   
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---   87 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENR---   87 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS---
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecC---
Confidence            3568899999999999999987541                      246799999999999999999999998543   


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEec
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGD  785 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~D  785 (929)
                        ...++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++    .+||+|
T Consensus        88 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~D  162 (321)
T 2a2a_A           88 --TDVVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLID  162 (321)
T ss_dssp             --SEEEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECC
T ss_pred             --CEEEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEcc
Confidence              34899999999999999986433        3367899999999998   999999999999999888    799999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      ||+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.+. .+..
T Consensus       163 fg~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~-~i~~  232 (321)
T 2a2a_A          163 FGLAHEIEDG-------VEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLA-NITS  232 (321)
T ss_dssp             CTTCEECCTT-------CCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHH-HHHT
T ss_pred             CccceecCcc-------ccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH--HHHHH-HHHh
Confidence            9999865321       112335799999999999999999999999999877665544333322111  11100 0110


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         .............+..+.+++.+|++.||++|||++|+++
T Consensus       233 ---~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~  272 (321)
T 2a2a_A          233 ---VSYDFDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALR  272 (321)
T ss_dssp             ---TCCCCCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred             ---cccccChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence               0000011111112223344777999999999999999985

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=1.1e-32  Score=302.73  Aligned_cols=249  Identities=19%  Similarity=0.292  Sum_probs=181.5

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccce
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKL  707 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l  707 (929)
                      +...++....++|+..+.||+|+||.||+|++.                      ...+.+.+|+++++++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            445555666789999999999999999998631                      1235688999999999 79999999


Q ss_pred             eeecccCCCCCcceEEEEEEecCCCCcccccccccc------------------------ccccHHHHHHHhhhCCCCCE
Q 002376          708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERK------------------------NELDITSALDYLHNDCEVPV  763 (929)
Q Consensus       708 ~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~------------------------~~~~ia~aL~yLH~~~~~~i  763 (929)
                      ++++...+    ...++||||+++|+|.+++.....                        ++.|++.||+|||+.   +|
T Consensus        97 ~~~~~~~~----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i  169 (316)
T 2xir_A           97 LGACTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KC  169 (316)
T ss_dssp             EEEECCTT----SCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred             EEEEecCC----CceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence            99986432    247999999999999999864321                        246899999999998   99


Q ss_pred             EecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch
Q 002376          764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       764 iHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                      +||||||+||+++.++.+||+|||+++.....    ..........||+.|+|||++.+..++.++||||+|++++++..
T Consensus       170 ~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t  245 (316)
T 2xir_A          170 IHRDLAARNILLSEKNVVKICDFGLARDIYKD----PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS  245 (316)
T ss_dssp             CCSCCSGGGEEECGGGCEEECCCGGGSCTTTC----TTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ccccCccceEEECCCCCEEECCCccccccccC----ccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999865321    11112234568999999999999999999999999987766543


Q ss_pred             -hHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          844 -VKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       844 -~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                       ...++....      .+..+..........  ..+.....-+.+++.+||+.||++|||++|+++.|+++.+...
T Consensus       246 ~g~~p~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~  313 (316)
T 2xir_A          246 LGASPYPGVK------IDEEFCRRLKEGTRM--RAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQANA  313 (316)
T ss_dssp             TSCCSSTTCC------CSHHHHHHHHHTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcccc------hhHHHHHHhccCccC--CCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence             322222111      111111111110000  0000111122337779999999999999999999999987654

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=2.3e-32  Score=295.90  Aligned_cols=229  Identities=22%  Similarity=0.279  Sum_probs=168.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------------cHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||.||+|++..                       ..+.+.+|++++++++||||+++++++.+.  
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~--   95 (287)
T 4f0f_A           18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP--   95 (287)
T ss_dssp             STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--
T ss_pred             hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--
Confidence            4678899999999999999987641                       016789999999999999999999998432  


Q ss_pred             CCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCC--EEecCCCCCCeeecCCCc-----
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVP--VVHSDLKPGNILLDEEMT-----  780 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~--iiHrDlk~~NILl~~~~~-----  780 (929)
                           .++||||+++|+|.+++....         .++.|++.||+|||+.   +  |+||||||+||+++.++.     
T Consensus        96 -----~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~  167 (287)
T 4f0f_A           96 -----PRMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVC  167 (287)
T ss_dssp             -----TEEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCC
T ss_pred             -----CeEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCcee
Confidence                 279999999999988875332         2467899999999998   7  999999999999988776     


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccC--CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL--GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV  858 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~  858 (929)
                      +||+|||+++....         ......||+.|+|||++.  ...++.++||||+|++++++.....++..........
T Consensus       168 ~kl~Dfg~~~~~~~---------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~  238 (287)
T 4f0f_A          168 AKVADFGLSQQSVH---------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKF  238 (287)
T ss_dssp             EEECCCTTCBCCSS---------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHH
T ss_pred             EEeCCCCccccccc---------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHH
Confidence            99999999974321         123457999999999984  4557899999999987777655544443322210000


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .........  ..    ..++..+..+.+++.+||+.||++|||++|+++.|+++
T Consensus       239 ~~~~~~~~~--~~----~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l  287 (287)
T 4f0f_A          239 INMIREEGL--RP----TIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSEL  287 (287)
T ss_dssp             HHHHHHSCC--CC----CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred             HHHHhccCC--CC----CCCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence            000000000  00    01111122233477799999999999999999999864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=1.2e-32  Score=296.68  Aligned_cols=241  Identities=20%  Similarity=0.262  Sum_probs=175.7

Q ss_pred             HhhCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ...++|+..+.||+|+||.||+|+..              ...+.|.+|++++++++||||+++++++...      ..+
T Consensus        10 v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~------~~~   83 (279)
T 1qpc_A           10 VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQE------PIY   83 (279)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS------SCE
T ss_pred             cCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcCcceEEEEEcCC------CcE
Confidence            34567889999999999999998754              1356899999999999999999999998532      269


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +||||+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...
T Consensus        84 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~  160 (279)
T 1qpc_A           84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIE  160 (279)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCccccccc
Confidence            9999999999999987432          2367899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...     ........|++.|+|||++.+..++.++||||+|++++++.. ...++.....       ..+.........
T Consensus       161 ~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-------~~~~~~~~~~~~  228 (279)
T 1qpc_A          161 DNE-----YTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-------PEVIQNLERGYR  228 (279)
T ss_dssp             SSC-----EECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH-------HHHHHHHHTTCC
T ss_pred             Ccc-----cccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH-------HHHHHHHhcccC
Confidence            211     111223457889999999988889999999999977666543 2222221111       111111100000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                        ..........+.+++.+|++.||++|||++++++.|+++......+.
T Consensus       229 --~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~  275 (279)
T 1qpc_A          229 --MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQY  275 (279)
T ss_dssp             --CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC----
T ss_pred             --CCCcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCCC
Confidence              00001111223337779999999999999999999999987755443

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.97  E-value=1.4e-32  Score=297.98  Aligned_cols=227  Identities=24%  Similarity=0.346  Sum_probs=165.9

Q ss_pred             CCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .|+..+.||+|+||.||+|.+..                  ..+.+.+|+.++++++||||+++++++.... ......+
T Consensus        27 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~-~~~~~~~  105 (290)
T 1t4h_A           27 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV-KGKKCIV  105 (290)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES-SSCEEEE
T ss_pred             eEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecccc-CCCceEE
Confidence            46777899999999999987641                  2356889999999999999999999886533 2345689


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCC--EEecCCCCCCeeec-CCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVP--VVHSDLKPGNILLD-EEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~--iiHrDlk~~NILl~-~~~~~ki~DfGla~~~  792 (929)
                      +||||+++|+|.+++....        .++.+++.||+|||+.   +  |+||||||+||+++ +++.+||+|||+++..
T Consensus       106 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~  182 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLK  182 (290)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGC
T ss_pred             EEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCcccc
Confidence            9999999999999986422        3367899999999998   6  99999999999997 7899999999999754


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..        .......||+.|+|||++.+ .++.++||||+|++++++.....++...... .+     ..........
T Consensus       183 ~~--------~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~-~~-----~~~~~~~~~~  247 (290)
T 1t4h_A          183 RA--------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA-AQ-----IYRRVTSGVK  247 (290)
T ss_dssp             CT--------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-HH-----HHHHHTTTCC
T ss_pred             cc--------cccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcH-HH-----HHHHHhccCC
Confidence            21        12234579999999998864 5999999999998777765544444322210 00     1110000000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ...........+.+++.+||+.||++|||++|+++
T Consensus       248 -~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  282 (290)
T 1t4h_A          248 -PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  282 (290)
T ss_dssp             -CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             -ccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence             00011111112333777999999999999999985

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.97  E-value=1.2e-32  Score=296.76  Aligned_cols=225  Identities=21%  Similarity=0.279  Sum_probs=166.4

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.++|+..+.||+|+||.||+|+...                   ..+.+.+|+.++++++||||+++++++.+.     
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----   81 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-----   81 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC-----
Confidence            35688999999999999999997652                   134688999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++..
T Consensus        82 ~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~  158 (279)
T 3fdn_A           82 TRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVH  158 (279)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESC
T ss_pred             CEEEEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEecccccc
Confidence            34899999999999999886432        3467899999999998   999999999999999999999999999865


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....        ......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.. ..+...   ..
T Consensus       159 ~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~-~~~~~~---~~  224 (279)
T 3fdn_A          159 APSS--------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--QETY-KRISRV---EF  224 (279)
T ss_dssp             C----------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHH-HHHHHT---CC
T ss_pred             CCcc--------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcH--HHHH-HHHHhC---CC
Confidence            4211        12345789999999999999999999999999777665444333322111  1111 111110   01


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                      ...    +.....+++++.+||+.||++|||++|+++.
T Consensus       225 ~~~----~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h  258 (279)
T 3fdn_A          225 TFP----DFVTEGARDLISRLLKHNPSQRPMLREVLEH  258 (279)
T ss_dssp             CCC----TTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred             CCC----CcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence            111    1112223347779999999999999999863

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=1e-32  Score=299.35  Aligned_cols=246  Identities=20%  Similarity=0.228  Sum_probs=176.9

Q ss_pred             hhCCCCCce-eecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          659 ATGNFSHEN-LIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       659 ~~~~~~~~~-~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      ..++|...+ .||+|+||.||+|.+.                    ...+++.+|++++++++||||+++++++..    
T Consensus        14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~----   89 (291)
T 1xbb_A           14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA----   89 (291)
T ss_dssp             CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES----
T ss_pred             cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC----
Confidence            345677777 9999999999998431                    014678899999999999999999999832    


Q ss_pred             CcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                        ...++||||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        90 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~  164 (291)
T 1xbb_A           90 --ESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLS  164 (291)
T ss_dssp             --SSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTC
T ss_pred             --CCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCcc
Confidence              23799999999999999987433        3367899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +.......   .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....       ..+.....
T Consensus       165 ~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-------~~~~~~~~  234 (291)
T 1xbb_A          165 KALRADEN---YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG-------SEVTAMLE  234 (291)
T ss_dssp             EECCTTCS---EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH-------HHHHHHHH
T ss_pred             eeeccCCC---cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCH-------HHHHHHHH
Confidence            86632211   1111223356789999999998889999999999977766543 3333222111       11111111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhccCCCC
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNG  925 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~~p~~  925 (929)
                      ....  ...+...+..+.+++.+||+.||++||++.|++++|+++.........|++
T Consensus       235 ~~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~~~~~~  289 (291)
T 1xbb_A          235 KGER--MGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVNEGHHHH  289 (291)
T ss_dssp             TTCC--CCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cCCC--CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhhcccccc
Confidence            1100  000011122233377799999999999999999999999888776655543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=8.6e-33  Score=329.74  Aligned_cols=235  Identities=20%  Similarity=0.275  Sum_probs=170.0

Q ss_pred             CCCce-eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          663 FSHEN-LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       663 ~~~~~-~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +...+ .||+|+||.||+|.+.                   ...++|.+|++++++++|||||+++++|..      +..
T Consensus       337 ~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~  410 (613)
T 2ozo_A          337 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EAL  410 (613)
T ss_dssp             EEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSE
T ss_pred             eeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCe
Confidence            33344 7999999999988542                   235789999999999999999999999853      127


Q ss_pred             EEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ++|||||++|+|.+++...+         .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++.+.
T Consensus       411 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~  487 (613)
T 2ozo_A          411 MLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALG  487 (613)
T ss_dssp             EEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC
T ss_pred             EEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCccccc
Confidence            99999999999999986432         2367899999999998   99999999999999999999999999998764


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ....   .........+|+.|||||++.+..++.++||||+|++++++.. ...++.....       ..+...+.... 
T Consensus       488 ~~~~---~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~-------~~~~~~i~~~~-  556 (613)
T 2ozo_A          488 ADDS---YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-------PEVMAFIEQGK-  556 (613)
T ss_dssp             -----------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCS-------HHHHHHHHTTC-
T ss_pred             CCCc---eeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCH-------HHHHHHHHcCC-
Confidence            2211   1111222356789999999999999999999999987777543 3333322211       11221111111 


Q ss_pred             hhhhhh-HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          873 QTIQLH-DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       873 ~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                       +...+ .+...+.+ ++.+||+.||++||++++++++|+++......
T Consensus       557 -~~~~p~~~~~~l~~-li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~  602 (613)
T 2ozo_A          557 -RMECPPECPPELYA-LMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS  602 (613)
T ss_dssp             -CCCCCTTCCHHHHH-HHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred             -CCCCCCcCCHHHHH-HHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence             00111 11223333 77899999999999999999999998877653

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=2.6e-32  Score=302.25  Aligned_cols=240  Identities=19%  Similarity=0.319  Sum_probs=175.9

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|+..+.||+|+||.||+|++.                        ...+.+.+|+++++++ +||||+++++++...
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~  113 (334)
T 2pvf_A           34 RDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  113 (334)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccC
Confidence            468889999999999999998642                        1235688999999999 899999999999653


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +     ..++||||+++|+|.+++...+                        .++.|++.||+|||+.   +|+||||||
T Consensus       114 ~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp  185 (334)
T 2pvf_A          114 G-----PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA  185 (334)
T ss_dssp             S-----CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred             C-----ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCcc
Confidence            3     4799999999999999986432                        1256899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +||+++.++.+||+|||+++......    .........||+.|+|||++.+..++.++||||+|++++++.+ ...++.
T Consensus       186 ~NIll~~~~~~kL~Dfg~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~  261 (334)
T 2pvf_A          186 RNVLVTENNVMKIADFGLARDINNID----YYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYP  261 (334)
T ss_dssp             GGEEECTTCCEEECCCTTCEECTTTS----SEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             ceEEEcCCCCEEEccccccccccccc----cccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcC
Confidence            99999999999999999998653211    1111233467889999999988889999999999987766543 222222


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      ..+  ..++.. .+.....  .......+   ..+. +++.+||+.||++|||++|+++.|+++.......
T Consensus       262 ~~~--~~~~~~-~~~~~~~--~~~~~~~~---~~l~-~li~~~l~~dp~~Rps~~ell~~L~~l~~~~~~~  323 (334)
T 2pvf_A          262 GIP--VEELFK-LLKEGHR--MDKPANCT---NELY-MMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNE  323 (334)
T ss_dssp             TCC--HHHHHH-HHHHTCC--CCCCTTCC---HHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred             cCC--HHHHHH-HHhcCCC--CCCCccCC---HHHH-HHHHHHccCChhhCcCHHHHHHHHHHHHhccccC
Confidence            111  111111 1111000  00111111   2233 3777999999999999999999999998876543

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.97  E-value=3.4e-33  Score=312.68  Aligned_cols=227  Identities=26%  Similarity=0.309  Sum_probs=161.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHH-HHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECET-LRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~-l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||+||+++...                   ..+.+.+|..+ ++.++|||||++++++.+     .
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~-----~  111 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-----A  111 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC-----S
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe-----C
Confidence            3578899999999999999987652                   12345567666 567899999999999854     3


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...|+||||+++|+|.+++...+        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++.
T Consensus       112 ~~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~  188 (373)
T 2r5t_A          112 DKLYFVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKE  188 (373)
T ss_dssp             SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGG
T ss_pred             CEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCccccc
Confidence            35899999999999999886432        3467999999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....      .......+||+.|||||++.+..++.++||||+|+++|++..+..++....  ..+..+..+..    ..
T Consensus       189 ~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~--~~~~~~~i~~~----~~  256 (373)
T 2r5t_A          189 NIEH------NSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN--TAEMYDNILNK----PL  256 (373)
T ss_dssp             GBCC------CCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB--HHHHHHHHHHS----CC
T ss_pred             cccC------CCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC--HHHHHHHHHhc----cc
Confidence            4211      112344689999999999999999999999999988777655444432211  11111111111    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      .....    +...+++++.+|++.||++||++.+.++.+
T Consensus       257 ~~~~~----~~~~~~~li~~lL~~dp~~R~~~~~~~~~i  291 (373)
T 2r5t_A          257 QLKPN----ITNSARHLLEGLLQKDRTKRLGAKDDFMEI  291 (373)
T ss_dssp             CCCSS----SCHHHHHHHHHHTCSSGGGSTTTTTTHHHH
T ss_pred             CCCCC----CCHHHHHHHHHHcccCHHhCCCCCCCHHHH
Confidence            11111    222233477799999999999986544443

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.97  E-value=6.4e-34  Score=313.06  Aligned_cols=259  Identities=22%  Similarity=0.266  Sum_probs=171.7

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++.....++|+..+.||+|+||.||+|+..+               ..+.|.+|+.++++++||||+++++++...+  
T Consensus        25 ~~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~--  102 (319)
T 2y4i_B           25 LQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPP--  102 (319)
T ss_dssp             GGGSSSCCSCEECCCBCCCSSSSEEEEEEESSSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSS--
T ss_pred             cccccCCHHHeEEeeEeccCCceEEEEEEEcCeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC--
Confidence            34444556789999999999999999987542               2346778999999999999999999996533  


Q ss_pred             CcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                         ..++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++ ++.+||+|||+
T Consensus       103 ---~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~  175 (319)
T 2y4i_B          103 ---HLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGL  175 (319)
T ss_dssp             ---CEEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSC
T ss_pred             ---ceEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCC
Confidence               4899999999999999987533         2367899999999998   999999999999998 67999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCC---------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG---------ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL  859 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~  859 (929)
                      ++........ ..........||+.|+|||++.+         ..++.++||||+|++++++.....++.....  .+..
T Consensus       176 ~~~~~~~~~~-~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~--~~~~  252 (319)
T 2y4i_B          176 FSISGVLQAG-RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA--EAII  252 (319)
T ss_dssp             CC-----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH--HHHH
T ss_pred             cccccccccc-ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHH
Confidence            8765321111 11112233469999999999875         4579999999999877776554444332221  1110


Q ss_pred             ChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhccCCCCCCCC
Q 002376          860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKTKS  929 (929)
Q Consensus       860 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~~p~~~~~s  929 (929)
                       ..+........ .....++.+.    +++.+||+.||++|||++|++++|+++.+.......|...++|
T Consensus       253 -~~~~~~~~~~~-~~~~~~~~l~----~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~~~~~~~~~~~~~  316 (319)
T 2y4i_B          253 -WQMGTGMKPNL-SQIGMGKEIS----DILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPGHFWKS  316 (319)
T ss_dssp             -HHHHTTCCCCC-CCSSCCTTHH----HHHHHHHCSSTTTSCCHHHHHHHHTTC----------------
T ss_pred             -HHhccCCCCCC-CcCCCCHHHH----HHHHHHhcCChhhCcCHHHHHHHHHHHHHhhccCCCCcccccc
Confidence             01111000000 0001112222    3777999999999999999999999999988777777766553

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=9.2e-33  Score=304.27  Aligned_cols=242  Identities=20%  Similarity=0.265  Sum_probs=178.8

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCcccccee
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLI  708 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~  708 (929)
                      +..++++...++|+..+.||+|+||.||+|++.                      .....|.+|++++++++||||++++
T Consensus        15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~   94 (322)
T 1p4o_A           15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL   94 (322)
T ss_dssp             CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred             cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence            444556667789999999999999999997643                      1234688999999999999999999


Q ss_pred             eecccCCCCCcceEEEEEEecCCCCccccccccc------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +++...+     ..++||||+++|+|.++++..+                  .++.|++.||+|||+.   +|+||||||
T Consensus        95 ~~~~~~~-----~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp  166 (322)
T 1p4o_A           95 GVVSQGQ-----PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAA  166 (322)
T ss_dssp             EEECSSS-----SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSG
T ss_pred             EEEccCC-----ccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCcc
Confidence            9985533     3799999999999999986421                  2356899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +||+++.++.+||+|||+++.......    ........||+.|+|||++.+..++.++||||+|++++++.. ...++.
T Consensus       167 ~NIli~~~~~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  242 (322)
T 1p4o_A          167 RNCMVAEDFTVKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQ  242 (322)
T ss_dssp             GGEEECTTCCEEECCTTCCCGGGGGGC----EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTT
T ss_pred             ceEEEcCCCeEEECcCccccccccccc----cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999986532211    111223467899999999999999999999999987776544 222222


Q ss_pred             cCCchhhhccChHHHHhhccc--chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          850 NLPENVLQVLDPELRQLMTSN--ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ....  .     .........  ......    ....+.+++.+||+.||++|||+.|+++.|+++..
T Consensus       243 ~~~~--~-----~~~~~~~~~~~~~~~~~----~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~  299 (322)
T 1p4o_A          243 GLSN--E-----QVLRFVMEGGLLDKPDN----CPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  299 (322)
T ss_dssp             TSCH--H-----HHHHHHHTTCCCCCCTT----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             cCCH--H-----HHHHHHHcCCcCCCCCC----CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhc
Confidence            2111  1     111111000  000111    11223337779999999999999999999998744

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.97  E-value=1.3e-32  Score=301.04  Aligned_cols=237  Identities=24%  Similarity=0.291  Sum_probs=168.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccC---------------------cHHHHHHHHHHHHccC---CccccceeeecccC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG---------------------SWKSFIAECETLRNVR---HRNLVKLITSCSSL  714 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------~~~~~~~E~~~l~~l~---Hpniv~l~~~~~~~  714 (929)
                      ..++|+..+.||+|+||.||+|++..                     ....+.+|++++++++   ||||++++++|...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            35789999999999999999998541                     1246778888887775   99999999999765


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      ........++||||++ |+|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~  162 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKLA  162 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEEC
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEEe
Confidence            5444456899999996 69999886432          2367899999999998   89999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |||+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.......
T Consensus       163 Dfg~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~--~~~~~~i~~  233 (308)
T 3g33_A          163 DFGLARIYSYQ-------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSE--ADQLGKIFD  233 (308)
T ss_dssp             SCSCTTTSTTC-------CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSH--HHHHHHHHH
T ss_pred             eCccccccCCC-------cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHH
Confidence            99999865321       122345799999999999999999999999999887776554433322211  000000000


Q ss_pred             Hh------------------hcccc-hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QL------------------MTSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~------------------~~~~~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..                  +.... .........+.+.+.+++.+|++.||++|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  296 (308)
T 3g33_A          234 LIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ  296 (308)
T ss_dssp             HHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HhCCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence            00                  00000 0000000011222334777999999999999999975

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=1.7e-32  Score=298.19  Aligned_cols=249  Identities=18%  Similarity=0.181  Sum_probs=179.8

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..+.||+|+||.||+|++.              ...+++.+|+.+++.++|+++++.++++...    ....++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~----~~~~~lv   83 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYNVMV   83 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSCCHHHHHHHHHHHHTTSTTCCCEEEEEEE----TTEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcchhHHHHHHHHHHHhhcCCCCCccccccCC----CCceEEE
Confidence            568999999999999999999853              1235789999999999999988888777542    3357999


Q ss_pred             EEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEeccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla~~~~  793 (929)
                      |||+ +|+|.+++....         .++.|++.||+|||+.   +|+||||||+||++   ++++.+||+|||+++...
T Consensus        84 ~e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  159 (296)
T 3uzp_A           84 MELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR  159 (296)
T ss_dssp             EECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             EEec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence            9999 899999986221         3367899999999998   99999999999999   588899999999998764


Q ss_pred             cccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          794 ERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       794 ~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                      ....... .........||+.|+|||++.+..++.++||||+|++++++.....++..... ...+.+........... 
T Consensus       160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-  238 (296)
T 3uzp_A          160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTP-  238 (296)
T ss_dssp             CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSC-
T ss_pred             ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCc-
Confidence            3321110 11122445799999999999999999999999999888776665555443221 11111111011100000 


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                        .......+++-+.+++.+||+.||++|||++|+++.|+++......
T Consensus       239 --~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~~  284 (296)
T 3uzp_A          239 --IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQGF  284 (296)
T ss_dssp             --HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC
T ss_pred             --hHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcCC
Confidence              0000011112233377799999999999999999999998877553

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=4.2e-32  Score=293.81  Aligned_cols=246  Identities=20%  Similarity=0.236  Sum_probs=179.6

Q ss_pred             CCCCCce-eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHEN-LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~-~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|...+ .||+|+||.||+|.+.                   ...+.+.+|++++++++||||+++++++.. +     
T Consensus         9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~-----   82 (287)
T 1u59_A            9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-E-----   82 (287)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-S-----
T ss_pred             HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC-C-----
Confidence            3555555 8999999999998642                   124578899999999999999999999832 1     


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus        83 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           83 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             CcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceee
Confidence            2799999999999999985322         2367899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ......   .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....       ..+.......
T Consensus       160 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-------~~~~~~i~~~  229 (287)
T 1u59_A          160 LGADDS---YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-------PEVMAFIEQG  229 (287)
T ss_dssp             CTTCSC---EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-------HHHHHHHHTT
T ss_pred             eccCcc---eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCH-------HHHHHHHhcC
Confidence            642211   1111223357899999999988889999999999987776543 3333322211       1111111111


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhccCCCCCC
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQVPNGKT  927 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~~p~~~~  927 (929)
                      ..  ...+...+..+.+++.+||+.||++||++.|+++.|+++......+..++++.
T Consensus       230 ~~--~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~~~~~~~~  284 (287)
T 1u59_A          230 KR--MECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKVEGHHHH  284 (287)
T ss_dssp             CC--CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTCSSCCCT
T ss_pred             Cc--CCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCCcccCCccc
Confidence            00  00001112223337779999999999999999999999999988776665543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.97  E-value=2.3e-32  Score=313.33  Aligned_cols=180  Identities=23%  Similarity=0.320  Sum_probs=142.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|...+.||+|+||.||+|++..                  ..+.+.+|++++++++|||||++++++...+......
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            4689999999999999999997541                  2357889999999999999999999997654333356


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||||++ |+|.++++...        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+...
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~~~~  180 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLARTIN  180 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC-
T ss_pred             EEEEEecCC-cCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCccccc
Confidence            899999996 69999887433        3467999999999998   99999999999999999999999999998764


Q ss_pred             cccCCCC----------------Cccccceecccccccccccc-CCCCCCCCCCCCCCcCCCCCcch
Q 002376          794 ERVDNQS----------------SISSTHVFMGSIGYVPPEYG-LGERPSTAGDVPTSESFAGEFNI  843 (929)
Q Consensus       794 ~~~~~~~----------------~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DV~s~g~~~~~~~~  843 (929)
                      .......                ........+||+.|+|||++ .+..++.++||||+||+++++..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~  247 (432)
T 3n9x_A          181 SEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLN  247 (432)
T ss_dssp             ------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHh
Confidence            3211100                00123456899999999986 55669999999999998888654

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=2.5e-32  Score=299.12  Aligned_cols=242  Identities=22%  Similarity=0.292  Sum_probs=165.4

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|...                   ...+.+.+|+.++++++||||+++++++...     .
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~  105 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-----N  105 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----T
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-----C
Confidence            357889999999999999998753                   1235688999999999999999999998653     3


Q ss_pred             eEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ..++||||+++|+|.+++...            ..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus       106 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~  182 (310)
T 2wqm_A          106 ELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGL  182 (310)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC--
T ss_pred             cEEEEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccc
Confidence            489999999999999988631            13367899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ++......      .......||+.|+|||++.+..++.++||||+|++++++.....++........     .+.....
T Consensus       183 ~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~-----~~~~~~~  251 (310)
T 2wqm_A          183 GRFFSSKT------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLY-----SLCKKIE  251 (310)
T ss_dssp             ----------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHH-----HHHHHHH
T ss_pred             eeeecCCC------ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHH-----HHHHHhh
Confidence            98653211      112335789999999999999999999999999877765544333221111110     1111110


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                      ....... ........+.+++.+||+.||++|||++|+++.|+++++....+.
T Consensus       252 ~~~~~~~-~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~~  303 (310)
T 2wqm_A          252 QCDYPPL-PSDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASSL  303 (310)
T ss_dssp             TTCSCCC-CTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred             cccCCCC-cccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence            0000000 001112223337779999999999999999999999988866443

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.97  E-value=7.7e-33  Score=309.45  Aligned_cols=228  Identities=21%  Similarity=0.248  Sum_probs=159.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||.||+++...               ..+.+.+|+.++++++|||||++++++.+.     ...++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-----~~~~l   93 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPNIVRFKEVILTP-----THLAI   93 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTTBCCEEEEEECS-----SEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCCCCcEEEEEeeC-----CEEEE
Confidence            4689999999999999999987651               236788999999999999999999999643     34899


Q ss_pred             EEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc--eEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT--AKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~--~ki~DfGla~~~~~  794 (929)
                      ||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.  +||+|||+|+....
T Consensus        94 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~  170 (361)
T 3uc3_A           94 IMEYASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL  170 (361)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred             EEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence            999999999999886322        3467999999999998   9999999999999987765  99999999974321


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCC-CCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc--
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTA-GDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE--  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--  871 (929)
                      .       ......+||+.|+|||++.+..++.+ +||||+|+++|++..+..++.....  .+.....+........  
T Consensus       171 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~~~~~~~~~~~~~  241 (361)
T 3uc3_A          171 H-------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEE--PRDYRKTIQRILSVKYSI  241 (361)
T ss_dssp             -----------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC------CCCHHHHHHHHHTTCCCC
T ss_pred             c-------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCcc--HHHHHHHHHHHhcCCCCC
Confidence            1       11234579999999999988887666 8999999877765554443322211  0000111111111110  


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......++    .+.+++.+||+.||++|||+.|+++
T Consensus       242 ~~~~~~s~----~~~~li~~~L~~dP~~Rps~~ell~  274 (361)
T 3uc3_A          242 PDDIRISP----ECCHLISRIFVADPATRISIPEIKT  274 (361)
T ss_dssp             CTTSCCCH----HHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             CCcCCCCH----HHHHHHHHHccCChhHCcCHHHHHh
Confidence            00001112    2233777999999999999999975

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.97  E-value=5e-33  Score=324.48  Aligned_cols=228  Identities=23%  Similarity=0.293  Sum_probs=169.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..++||+|+||+||+|+...                   ..+.+.+|++++++++|||||++++++.+     ..
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-----~~  257 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-----KD  257 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee-----CC
Confidence            4578889999999999999987641                   23457899999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ..|+||||+++|+|.+++....          .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus       258 ~l~lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~  334 (576)
T 2acx_A          258 ALCLVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAV  334 (576)
T ss_dssp             EEEEEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEEEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccce
Confidence            5899999999999999886432          2357899999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .+...       ......+||+.|||||++.+..++.++||||+|+++|++..+..++......   .....+.......
T Consensus       335 ~~~~~-------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~---~~~~~i~~~i~~~  404 (576)
T 2acx_A          335 HVPEG-------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKK---IKREEVERLVKEV  404 (576)
T ss_dssp             ECCTT-------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSC---CCHHHHHHHHHHC
T ss_pred             ecccC-------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccc---hhHHHHHHHhhcc
Confidence            65321       1123458999999999999999999999999998877765544443322110   0001111111100


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      .   ...+..++.-+++++.+|++.||++||     +++||++
T Consensus       405 ~---~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~  444 (576)
T 2acx_A          405 P---EEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE  444 (576)
T ss_dssp             C---CCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred             c---ccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence            0   001111222334477799999999999     7788864

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.97  E-value=1.2e-32  Score=303.72  Aligned_cols=225  Identities=24%  Similarity=0.260  Sum_probs=159.0

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||.||+++..                       .....+.+|++++++++||||+++++++...  
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~--   93 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG--   93 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS--
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC--
Confidence            457899999999999999987652                       0123577899999999999999999998543  


Q ss_pred             CCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                         ...|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+
T Consensus        94 ---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~  167 (327)
T 3a62_A           94 ---GKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGL  167 (327)
T ss_dssp             ---SCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSC
T ss_pred             ---CEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCc
Confidence               34899999999999999886432        2367899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ++.....      .......+||+.|+|||++.+..++.++||||+|+++|++.....++....  ..+.++.....   
T Consensus       168 ~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~--~~~~~~~i~~~---  236 (327)
T 3a62_A          168 CKESIHD------GTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGEN--RKKTIDKILKC---  236 (327)
T ss_dssp             C----------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHHHHHHT---
T ss_pred             ccccccC------CccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCC--HHHHHHHHHhC---
Confidence            9854221      111234579999999999999999999999999987776554433332211  11111111111   


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                       .......    +...+++++.+||+.||++||     +++|+++
T Consensus       237 -~~~~p~~----~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~  276 (327)
T 3a62_A          237 -KLNLPPY----LTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA  276 (327)
T ss_dssp             -CCCCCTT----SCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred             -CCCCCCC----CCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence             1111111    222233477799999999999     6677764

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=2e-32  Score=307.20  Aligned_cols=236  Identities=13%  Similarity=0.060  Sum_probs=175.5

Q ss_pred             HHhhCCCCCceeecccCceeEEeccc-----c-------------CcHHHHHHHHHHHHccC---CccccceeeecccCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNER-----T-------------GSWKSFIAECETLRNVR---HRNLVKLITSCSSLD  715 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~-----~-------------~~~~~~~~E~~~l~~l~---Hpniv~l~~~~~~~~  715 (929)
                      ....++|...+.||+|+||.||+|.+     .             ....++.+|++++++++   |+||+++++++...+
T Consensus        61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~~  140 (365)
T 3e7e_A           61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQN  140 (365)
T ss_dssp             ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECSS
T ss_pred             EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCChhHHHHHHHHHHHhhhhhhhhhhhhheeeecCC
Confidence            34567899999999999999999942     1             23567889999999987   999999999986543


Q ss_pred             CCCcceEEEEEEecCCCCcccccccc-------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-----
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGE-------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----  777 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~-------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-----  777 (929)
                           ..++|||||++|+|.++++..             ..++.|++.||+|||+.   +||||||||+|||++.     
T Consensus       141 -----~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~  212 (365)
T 3e7e_A          141 -----GSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQ  212 (365)
T ss_dssp             -----CEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC
T ss_pred             -----CcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCc
Confidence                 379999999999999998631             13467999999999998   9999999999999998     


Q ss_pred             ------CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcC
Q 002376          778 ------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNL  851 (929)
Q Consensus       778 ------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~  851 (929)
                            ++.+||+|||+|+.+...    .........+||++|||||++.+..++.++||||+|+++|++.++..++...
T Consensus       213 ~~~~~~~~~~kl~DFG~a~~~~~~----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  288 (365)
T 3e7e_A          213 DDEDDLSAGLALIDLGQSIDMKLF----PKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKN  288 (365)
T ss_dssp             ------CTTEEECCCTTCEEGGGS----CTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEE
T ss_pred             cccccccCCEEEeeCchhhhhhcc----CCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccC
Confidence                  899999999999865321    1112234467999999999999999999999999997776655544333211


Q ss_pred             CchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCC-CCHHHHHHHHHhhHHHHh
Q 002376          852 PENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGR-IGIREALRRLKSSQEILL  918 (929)
Q Consensus       852 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~R-Ps~~ev~~~L~~~~~~~~  918 (929)
                      ... ..........         ....+...    +++..|++.+|.+| |+++++.+.|+++.+...
T Consensus       289 ~~~-~~~~~~~~~~---------~~~~~~~~----~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~~~  342 (365)
T 3e7e_A          289 EGG-ECKPEGLFRR---------LPHLDMWN----EFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQHY  342 (365)
T ss_dssp             ETT-EEEECSCCTT---------CSSHHHHH----HHHHHHHCCCCTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCC-ceeechhccc---------cCcHHHHH----HHHHHHcCCCCCCcchHHHHHHHHHHHHHHHhh
Confidence            110 0001111110         01112223    36669999999998 688899999998877643

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.97  E-value=5.8e-33  Score=306.42  Aligned_cols=247  Identities=24%  Similarity=0.324  Sum_probs=176.5

Q ss_pred             CCCCCceeecccCceeEEeccc----c----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNER----T----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~----~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||++++    .                ...+.|.+|++++++++||||+++++++...+   ..
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~---~~  117 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAG---RR  117 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC-------
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecC---CC
Confidence            4688889999999999999873    1                12457899999999999999999999986532   23


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++...+         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++.
T Consensus       118 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          118 NLKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV  194 (326)
T ss_dssp             CCEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred             ceEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchhh
Confidence            4799999999999999987432         2367899999999998   999999999999999999999999999987


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhcc---------ChH
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVL---------DPE  862 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  862 (929)
                      ......   .........|+..|+|||++.+..++.++||||+|++++++.....++...+....+..         ...
T Consensus       195 ~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (326)
T 2w1i_A          195 LPQDKE---YYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFH  271 (326)
T ss_dssp             CCSSCS---EEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHH
T ss_pred             cccccc---ccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHH
Confidence            642211   00111234578889999999988899999999999888776554333221111111100         001


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      +.........  ...+...+..+.+++.+||+.||++|||++|++++|+++++.+.
T Consensus       272 ~~~~~~~~~~--~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~  325 (326)
T 2w1i_A          272 LIELLKNNGR--LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA  325 (326)
T ss_dssp             HHHHHHTTCC--CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCC--CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence            1111111000  00011112223337779999999999999999999999988753

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=5.4e-33  Score=310.11  Aligned_cols=251  Identities=12%  Similarity=0.078  Sum_probs=177.8

Q ss_pred             CCCCCceeecccCceeEEeccccCc-------------------HHHHHHHHHHHHccCCccccce--------------
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAECETLRNVRHRNLVKL--------------  707 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E~~~l~~l~Hpniv~l--------------  707 (929)
                      ++|+..+.||+|+||.||+|+...+                   .+.+.+|++++++++|||||++              
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~  121 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKDGRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPT  121 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETTSTHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCC
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEecccchHHHHHHHHHHhcccchhhhhhhhccCCccCccc
Confidence            6899999999999999999976531                   2358899999999999999984              


Q ss_pred             -eeecccCCCCCcceEEEEEEecCCCCcccccccc--c--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          708 -ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE--R--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       708 -~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                       ++++..    .....++||||+ +|+|.+++...  .        .++.|++.||+|||+.   +|+||||||+||+++
T Consensus       122 ~~~~~~~----~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIl~~  193 (352)
T 2jii_A          122 CMGFGVH----QDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENIFVD  193 (352)
T ss_dssp             CCEEEEE----TTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGEEEE
T ss_pred             hhhcccc----CCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEEc
Confidence             444432    234689999999 99999998753  1        2367899999999998   999999999999999


Q ss_pred             CCC--ceEEeccccccccccccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc
Q 002376          777 EEM--TAKVGDFGLARFLLERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE  853 (929)
Q Consensus       777 ~~~--~~ki~DfGla~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~  853 (929)
                      .++  .+||+|||+++.+........ .........||+.|+|||++.+..++.++||||+|++++++.....++.....
T Consensus       194 ~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~  273 (352)
T 2jii_A          194 PEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLP  273 (352)
T ss_dssp             TTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT
T ss_pred             CCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCc
Confidence            998  999999999987653322111 11112334799999999999999999999999999887776554444433221


Q ss_pred             hhhhccChHHHHhhcccchhh--hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          854 NVLQVLDPELRQLMTSNESQT--IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       854 ~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      ....+. ..............  ......+...+.+++.+||+.||++||+++|++++|+++.+.....
T Consensus       274 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~~  341 (352)
T 2jii_A          274 NTEDIM-KQKQKFVDKPGPFVGPCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLRVS  341 (352)
T ss_dssp             CHHHHH-HHHHHHHHSCCCEECTTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHH-HHHHhccCChhhhhhhccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcCCC
Confidence            111110 00110000000000  0000001122333777999999999999999999999998886544

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.97  E-value=2e-33  Score=311.56  Aligned_cols=231  Identities=23%  Similarity=0.231  Sum_probs=167.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|+..+.||+|+||+||+|+...            ....+.+|++++.++ +||||+++++++.+     ....|+||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~~lv~   95 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTEEIEILLRYGQHPNIITLKDVYDD-----GKYVYVVT   95 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCCCHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCChHHHHHHHHHhcCCCCcCeEEEEEEc-----CCEEEEEE
Confidence            4578999999999999999987652            123456899999888 79999999999854     34589999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC----CceEEecccccccccc
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE----MTAKVGDFGLARFLLE  794 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~----~~~ki~DfGla~~~~~  794 (929)
                      ||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||+.++    +.+||+|||+++....
T Consensus        96 E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~  172 (342)
T 2qr7_A           96 ELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA  172 (342)
T ss_dssp             CCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC
Confidence            9999999999886443        3467899999999998   99999999999998433    3599999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      ......+||+.|+|||++.+..++.++||||+|+++|++.....++...+. ...+++........    ..
T Consensus       173 ~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~----~~  242 (342)
T 2qr7_A          173 EN------GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKF----SL  242 (342)
T ss_dssp             TT------CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCC----CC
T ss_pred             CC------CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCc----cc
Confidence            21      112345789999999999888899999999999887776655444432221 11111111111111    00


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....+..++..+++++.+|++.||++||+++|+++
T Consensus       243 ~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~  277 (342)
T 2qr7_A          243 SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLR  277 (342)
T ss_dssp             CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            00111112233344777999999999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.97  E-value=5.6e-33  Score=320.11  Aligned_cols=225  Identities=26%  Similarity=0.286  Sum_probs=161.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|+...                   ..+.+.+|+++++.++||||++++++|...     .
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~  221 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH-----D  221 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEET-----T
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeC-----C
Confidence            4679999999999999999887541                   124567899999999999999999999543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhh-CCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHN-DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++...+        .++.|++.||+|||+ .   +|+||||||+|||++.++.+||+|||+|+.
T Consensus       222 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~  298 (446)
T 4ejn_A          222 RLCFVMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKE  298 (446)
T ss_dssp             EEEEEECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCT
T ss_pred             EEEEEEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCcee
Confidence            4899999999999999886432        346799999999998 6   899999999999999999999999999985


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....      .......+||++|||||++.+..++.++||||+|++++++.....++.....  .+........    ..
T Consensus       299 ~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~i~~~----~~  366 (446)
T 4ejn_A          299 GIKD------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH--EKLFELILME----EI  366 (446)
T ss_dssp             TCC-----------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHC----CC
T ss_pred             ccCC------CcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH--HHHHHHHHhC----CC
Confidence            4211      1123346899999999999999999999999999877776554444322211  1111111111    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      .....    +...+.+++.+||+.||++||     +++|+++
T Consensus       367 ~~p~~----~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~  404 (446)
T 4ejn_A          367 RFPRT----LGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ  404 (446)
T ss_dssp             CCCTT----SCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             CCCcc----CCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence            11111    122233477799999999999     9999985

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=6.4e-33  Score=313.83  Aligned_cols=183  Identities=23%  Similarity=0.338  Sum_probs=136.0

Q ss_pred             hhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccC-CccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~  719 (929)
                      ..++|+..+.||+|+||.||+|.+..                  ..+.+.+|+.+++++. |||||++++++...+   .
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~---~   83 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADN---D   83 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTT---S
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCC---C
Confidence            45789999999999999999986541                  2356779999999997 999999999986532   2


Q ss_pred             ceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ...|+|||||+ |+|.++++..       +.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.+
T Consensus        84 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~  159 (388)
T 3oz6_A           84 RDVYLVFDYME-TDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRSF  159 (388)
T ss_dssp             SCEEEEEECCS-EEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEES
T ss_pred             CEEEEEecccC-cCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCcccccc
Confidence            35899999997 6898887642       23467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCC---------------CCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          793 LERVDNQ---------------SSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       793 ~~~~~~~---------------~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .......               .........+||+.|+|||++.+ ..++.++||||+|++++++..+..++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf  231 (388)
T 3oz6_A          160 VNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIF  231 (388)
T ss_dssp             SSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             cccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCC
Confidence            3211100               01112344689999999999987 57899999999998888766554433

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.97  E-value=3e-32  Score=313.89  Aligned_cols=224  Identities=25%  Similarity=0.299  Sum_probs=168.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...+.||+|+||+||+|++..                   ..+.+.+|+++++.++||||+++++++...     .
T Consensus        15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~-----~   89 (476)
T 2y94_A           15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP-----S   89 (476)
T ss_dssp             ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----S
T ss_pred             ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----C
Confidence            3578899999999999999987641                   134688999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+++..
T Consensus        90 ~~~lv~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~  166 (476)
T 2y94_A           90 DIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMM  166 (476)
T ss_dssp             EEEEEEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEEC
T ss_pred             EEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhc
Confidence            4899999999999999986432        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       ......+||+.|+|||++.+..+ +.++||||+|++++++..+..++....  ..+... .+..   ...
T Consensus       167 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~--~~~~~~-~i~~---~~~  233 (476)
T 2y94_A          167 SDG-------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDH--VPTLFK-KICD---GIF  233 (476)
T ss_dssp             CTT-------CCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSS--SHHHHH-HHHT---TCC
T ss_pred             ccc-------ccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCC--HHHHHH-HHhc---CCc
Confidence            321       11234579999999999998875 789999999987777654433332111  111110 1111   000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....    +..-+.+++.+||+.||++|||++|+++
T Consensus       234 ~~p~~----~s~~~~~Li~~~L~~dP~~Rpt~~eil~  266 (476)
T 2y94_A          234 YTPQY----LNPSVISLLKHMLQVDPMKRATIKDIRE  266 (476)
T ss_dssp             CCCTT----CCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCCcc----CCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence            00111    1122233777999999999999999986

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.97  E-value=6.1e-32  Score=308.38  Aligned_cols=229  Identities=22%  Similarity=0.237  Sum_probs=159.8

Q ss_pred             hhCCCCCceeecccCceeEEeccccCc------------------------HHHHHHHHHHHHccCCccccceeeecccC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTGS------------------------WKSFIAECETLRNVRHRNLVKLITSCSSL  714 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~~------------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~  714 (929)
                      ..++|...+.||+|+||.||+|.....                        ...+.+|++++++++|||||++++++.. 
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            457899999999999999999865411                        1247899999999999999999999732 


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEE
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKV  783 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki  783 (929)
                           ...++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.+   +.+||
T Consensus       212 -----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl  283 (419)
T 3i6u_A          212 -----EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKI  283 (419)
T ss_dssp             -----SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEE
T ss_pred             -----CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEE
Confidence                 23699999999999999886433        2367999999999998   99999999999999654   45999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCC---CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccC
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG---ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLD  860 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~  860 (929)
                      +|||+|+.....       ......+||+.|+|||++.+   ..++.++||||+|++++++.....++......  ..+.
T Consensus       284 ~DFG~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~--~~~~  354 (419)
T 3i6u_A          284 TDFGHSKILGET-------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ--VSLK  354 (419)
T ss_dssp             CCSSTTTSCC------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSS--CCHH
T ss_pred             eecccceecCCC-------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcch--HHHH
Confidence            999999875321       12234679999999999864   56889999999998777765544443322110  0000


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..+..   .........+..+...+.+++.+|++.||++|||++|+++
T Consensus       355 ~~i~~---~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  399 (419)
T 3i6u_A          355 DQITS---GKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  399 (419)
T ss_dssp             HHHHT---TCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHHhc---CCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence            11111   0000011111112223334777999999999999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=3.5e-32  Score=290.98  Aligned_cols=233  Identities=27%  Similarity=0.341  Sum_probs=173.5

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||++.+.              ...+++.+|++++++++||||+++++++...+     ..++||
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----~~~lv~   82 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-----PICLVT   82 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSS-----SCEEEE
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCCEeeEEEEEccCC-----CeEEEE
Confidence            57888899999999999998764              13468999999999999999999999986533     379999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|+|.++++..+         .++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++...... 
T Consensus        83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-  158 (267)
T 3t9t_A           83 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-  158 (267)
T ss_dssp             CCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-
T ss_pred             eCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccc-
Confidence            9999999999986432         2357899999999998   99999999999999999999999999998653211 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                          ........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .+.. ..+......  .....
T Consensus       159 ----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~~~~-~~i~~~~~~--~~~~~  229 (267)
T 3t9t_A          159 ----YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN--SEVV-EDISTGFRL--YKPRL  229 (267)
T ss_dssp             ----HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHH-HHHHTTCCC--CCCTT
T ss_pred             ----ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCH--HHHH-HHHhcCCcC--CCCcc
Confidence                111123457889999999998899999999999977666543 2322221111  1111 111110000  00011


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                          ....+.+++.+||+.||++||+++|+++.|+++.+
T Consensus       230 ----~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~  264 (267)
T 3t9t_A          230 ----ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE  264 (267)
T ss_dssp             ----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             ----CcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence                11223337779999999999999999999999876

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.97  E-value=4.9e-32  Score=307.06  Aligned_cols=235  Identities=19%  Similarity=0.152  Sum_probs=161.2

Q ss_pred             CCCCCc-eeecccCceeEEeccccC-----------cHHHHHHHHHHHHc-cCCccccceeeecccCCCCCcceEEEEEE
Q 002376          661 GNFSHE-NLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRN-VRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       661 ~~~~~~-~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~-l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      ++|... ++||+|+||+||++.+..           ....+.+|+.++.+ .+||||+++++++.... .+....|+|||
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~-~~~~~~~lv~E  139 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLY-AGRKCLLIVME  139 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEEEEEEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcchhHHHHHHHHHHhcCCCCcceEeEEEeecc-cCCcEEEEEEE
Confidence            456665 689999999999997652           23567889998754 58999999999885321 12456899999


Q ss_pred             ecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEecccccccccc
Q 002376          728 FLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLLE  794 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~~  794 (929)
                      ||++|+|.+++....          .++.||+.||+|||+.   +|+||||||+|||++.   ++.+||+|||+++....
T Consensus       140 ~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~  216 (400)
T 1nxk_A          140 CLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTS  216 (400)
T ss_dssp             CCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-
T ss_pred             eCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccccccCC
Confidence            999999999987432          2367899999999998   9999999999999997   78999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      .       ......+||+.|||||++.+..++.++||||+|+++|++..+..++.....  ...................
T Consensus       217 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~~~~~i~~~~~~~~  287 (400)
T 1nxk_A          217 H-------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG--LAISPGMKTRIRMGQYEFP  287 (400)
T ss_dssp             -----------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTT--CSSCCSHHHHHHHTCCCCC
T ss_pred             C-------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCcc--ccccHHHHHHHHcCcccCC
Confidence            1       122345799999999999999999999999999877776554443322111  0100001111000000000


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...+..+...+.+++.+||+.||++|||++|+++
T Consensus       288 ~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~  321 (400)
T 1nxk_A          288 NPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  321 (400)
T ss_dssp             TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            0000112222334777999999999999999986

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=3.2e-32  Score=293.29  Aligned_cols=232  Identities=25%  Similarity=0.319  Sum_probs=167.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYE  727 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e  727 (929)
                      .++|+..+.||+|+||.||+++..+            ..+.|.+|++++++++||||+++++++...+    ...++|||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~----~~~~lv~e   95 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK----GGLYIVTE   95 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC------CCEEEEC
T ss_pred             hhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC----CceEEEEe
Confidence            4578899999999999999987652            3567999999999999999999999975432    24799999


Q ss_pred             ecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          728 FLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       728 ~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....  
T Consensus        96 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~--  170 (278)
T 1byg_A           96 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST--  170 (278)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred             cCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccccccccc--
Confidence            999999999986432          3367899999999998   9999999999999999999999999999854211  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                             .....+++.|+|||++.+..++.++||||+|++++++.. ...++...+.  .+.. ..+.....  ......
T Consensus       171 -------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~--~~~~-~~~~~~~~--~~~~~~  238 (278)
T 1byg_A          171 -------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDVV-PRVEKGYK--MDAPDG  238 (278)
T ss_dssp             ------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG--GGHH-HHHTTTCC--CCCCTT
T ss_pred             -------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCH--HHHH-HHHhcCCC--CCCccc
Confidence                   122357889999999999999999999999987766543 3322222211  1110 11110000  000111


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .    +..+.+++.+||+.||++||+++|+++.|+++...
T Consensus       239 ~----~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~  274 (278)
T 1byg_A          239 C----PPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTH  274 (278)
T ss_dssp             C----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhh
Confidence            1    12223377799999999999999999999998764

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.97  E-value=8.9e-33  Score=299.28  Aligned_cols=172  Identities=27%  Similarity=0.386  Sum_probs=137.5

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||+|+..                 ...+.+.+|++++++++||||+++++++...     ...+
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   76 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTK-----KRLV   76 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECS-----SCEE
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccC-----CeEE
Confidence            57888999999999999998754                 1135788999999999999999999998643     3489


Q ss_pred             EEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++ +|.+++...         ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        77 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  152 (288)
T 1ob3_A           77 LVFEHLDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGI  152 (288)
T ss_dssp             EEEECCSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC
T ss_pred             EEEEecCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCc
Confidence            99999975 888877532         13467999999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      .      ........||+.|+|||++.+. .++.++||||+|++++++.....+
T Consensus       153 ~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p  200 (288)
T 1ob3_A          153 P------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL  200 (288)
T ss_dssp             ---------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             c------ccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            1      1112334789999999998764 589999999999887776554433

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=2.1e-32  Score=295.53  Aligned_cols=237  Identities=24%  Similarity=0.321  Sum_probs=173.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCC-----------
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-----------  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-----------  716 (929)
                      .++|+..+.||+|+||.||+|+...            ..+.+.+|++++++++||||+++++++.....           
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~   89 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKNSSR   89 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCSGGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC---------C
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEeccccHHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccccccc
Confidence            3578889999999999999997651            23578899999999999999999998753110           


Q ss_pred             CCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                      ......++||||+++|+|.+++...+          .++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus        90 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Df  166 (284)
T 2a19_B           90 SKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQVKIGDF  166 (284)
T ss_dssp             CEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCC
T ss_pred             cCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCCEEECcc
Confidence            12345799999999999999986431          2357899999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQ  865 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~  865 (929)
                      |+++......       ......||+.|+|||++.+..++.++||||+|++++++..     +..+. ...+.. ..+..
T Consensus       167 g~~~~~~~~~-------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~-----~~~~~~~~~~~~-~~~~~  233 (284)
T 2a19_B          167 GLVTSLKNDG-------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLH-----VCDTAFETSKFF-TDLRD  233 (284)
T ss_dssp             TTCEESSCCS-------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHS-----CCSSHHHHHHHH-HHHHT
T ss_pred             hhheeccccc-------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHh-----cCCcchhHHHHH-HHhhc
Confidence            9998663221       1223468999999999999999999999999977666432     22222 111100 01111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                          .. ....    +...+++++.+||+.||++|||+.|+++.|+.+.......+
T Consensus       234 ----~~-~~~~----~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~~~  280 (284)
T 2a19_B          234 ----GI-ISDI----FDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEKNE  280 (284)
T ss_dssp             ----TC-CCTT----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC------
T ss_pred             ----cc-cccc----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCccc
Confidence                00 0011    11222347779999999999999999999999876655443

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.97  E-value=3.9e-32  Score=293.32  Aligned_cols=234  Identities=21%  Similarity=0.265  Sum_probs=169.7

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||.||+++...                      ..+.+.+|++++++++||||+++++++...    
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~----   80 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENK----   80 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECS----
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCC----
Confidence            468889999999999999986541                      256799999999999999999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~Df  786 (929)
                       ...++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++    .+||+||
T Consensus        81 -~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~df  156 (283)
T 3bhy_A           81 -TDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDF  156 (283)
T ss_dssp             -SEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCC
T ss_pred             -CeEEEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEec
Confidence             34899999999999999986432        3467899999999998   999999999999998877    8999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      |+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.    ....
T Consensus       157 g~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~----~~~~  223 (283)
T 3bhy_A          157 GIAHKIEAG-------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK--QET----LTNI  223 (283)
T ss_dssp             TTCEECC---------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHH----HHHH
T ss_pred             ccceeccCC-------CcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch--HHH----HHHh
Confidence            999865321       112334689999999999999999999999999877765544433322211  000    0000


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQE  915 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~  915 (929)
                      ..................+.+++.+||+.||++||+++|+++  .++++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  274 (283)
T 3bhy_A          224 SAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRR  274 (283)
T ss_dssp             HTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHH
T ss_pred             HhcccCCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHH
Confidence            000000001111111223334777999999999999999986  4555543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.97  E-value=3.9e-32  Score=292.58  Aligned_cols=225  Identities=21%  Similarity=0.291  Sum_probs=147.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|+...                   ..+.+.+|++++++++||||+++++++..     ..
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~   84 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED-----SN   84 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-----SS
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-----CC
Confidence            4578899999999999999997531                   13568899999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           85 YVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceee
Confidence            5899999999999999886432         2367899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .....      .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.    +........
T Consensus       162 ~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~----~~~~~~~~~  229 (278)
T 3cok_A          162 LKMPH------EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV--KNT----LNKVVLADY  229 (278)
T ss_dssp             CC----------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSC--C---------CCSSCC
T ss_pred             ccCCC------CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH--HHH----HHHHhhccc
Confidence            53211      112235789999999999999999999999999877765544333322111  111    111000010


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....    +...+.+++.+||+.||++|||++|+++
T Consensus       230 ~~~~~----~~~~~~~li~~~l~~dp~~Rps~~~~l~  262 (278)
T 3cok_A          230 EMPSF----LSIEAKDLIHQLLRRNPADRLSLSSVLD  262 (278)
T ss_dssp             CCCTT----SCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             CCccc----cCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence            00111    1122233777999999999999999975

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.97  E-value=2.9e-32  Score=294.59  Aligned_cols=223  Identities=20%  Similarity=0.274  Sum_probs=167.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|+...                   ..+.+.+|++++++++||||+++++++.+.     .
T Consensus        13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~   87 (284)
T 2vgo_A           13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDR-----K   87 (284)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----S
T ss_pred             hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcC-----C
Confidence            3578899999999999999987641                   135688999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++...
T Consensus        88 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~  164 (284)
T 2vgo_A           88 RIYLMLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHA  164 (284)
T ss_dssp             EEEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccC
Confidence            5899999999999999886432        3467899999999998   9999999999999999999999999998754


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...        ......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.    ..........
T Consensus       165 ~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~----~~~~~~~~~~  230 (284)
T 2vgo_A          165 PSL--------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH--TET----HRRIVNVDLK  230 (284)
T ss_dssp             SSS--------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHH----HHHHHTTCCC
T ss_pred             ccc--------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH--hHH----HHHHhccccC
Confidence            211        12335789999999999999999999999999877765544333322111  000    0111111111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    +...+++++.+|++.||++||+++|+++
T Consensus       231 ~~~~----~~~~~~~li~~~l~~~p~~Rps~~~ll~  262 (284)
T 2vgo_A          231 FPPF----LSDGSKDLISKLLRYHPPQRLPLKGVME  262 (284)
T ss_dssp             CCTT----SCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             CCCc----CCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence            1111    1222334777999999999999999986

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.97  E-value=1.6e-32  Score=307.44  Aligned_cols=182  Identities=26%  Similarity=0.330  Sum_probs=149.8

Q ss_pred             CCCChHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccC-----Ccccccee
Q 002376          649 PKISYDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVR-----HRNLVKLI  708 (929)
Q Consensus       649 ~~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~-----Hpniv~l~  708 (929)
                      ..+++++.....++|+..++||+|+||.||+|++..               ..+.+..|+.++++++     |||||+++
T Consensus        23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            345666666677899999999999999999988741               1356778999999996     99999999


Q ss_pred             eecccCCCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-
Q 002376          709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-  777 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-  777 (929)
                      +++...     ...++||||+ +|+|.+++....          .++.|++.||+|||+.   +|+||||||+|||+++ 
T Consensus       103 ~~~~~~-----~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~  173 (360)
T 3llt_A          103 GKFMYY-----DHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDP  173 (360)
T ss_dssp             EEEEET-----TEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCT
T ss_pred             ceeeEC-----CeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccc
Confidence            998653     3489999999 899999886432          2367899999999998   9999999999999975 


Q ss_pred             ------------------------CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCC
Q 002376          778 ------------------------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT  833 (929)
Q Consensus       778 ------------------------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s  833 (929)
                                              ++.+||+|||+|+....         ......||+.|+|||++.+..++.++||||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  244 (360)
T 3llt_A          174 YFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSD---------YHGSIINTRQYRAPEVILNLGWDVSSDMWS  244 (360)
T ss_dssp             TCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTS---------CCCSCCSCGGGCCHHHHTTCCCCTTHHHHH
T ss_pred             cccccccchhcccccccccccccCCCCEEEEeccCceecCC---------CCcCccCcccccCcHHHcCCCCCCccchHH
Confidence                                    78999999999986421         112357899999999999999999999999


Q ss_pred             CcCCCCCcchhHHhh
Q 002376          834 SESFAGEFNIVKWVE  848 (929)
Q Consensus       834 ~g~~~~~~~~~~~~~  848 (929)
                      +|++++++.....++
T Consensus       245 lG~il~ell~g~~pf  259 (360)
T 3llt_A          245 FGCVLAELYTGSLLF  259 (360)
T ss_dssp             HHHHHHHHHHSSCSC
T ss_pred             HHHHHHHHHHCCCCC
Confidence            998877765554443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.5e-33  Score=335.87  Aligned_cols=455  Identities=14%  Similarity=0.081  Sum_probs=280.1

Q ss_pred             CCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCC---CCCCCcCCC------------CCCCC
Q 002376           57 SPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKL---SGNLPREIG------------NLFRL  121 (929)
Q Consensus        57 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L  121 (929)
                      -|++|.++.+...  +  .+.+.+ .....++..+..+++|++|+|+++..   .+.+|..++            .+++|
T Consensus        40 vck~W~~~~~~~~--~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           40 VCRRWFKIDSETR--E--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             SCHHHHHHHHHHC--C--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HhHHHHHhhhccc--c--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            3558999865321  2  222322 23333444566788999999998643   245666555            78999


Q ss_pred             cEEeCCCCCCCCCcccccccc--cccceecccccc-cCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCC
Q 002376          122 RVLNISFNNLQGELPVNISKL--TELKMLDLMANK-ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSR  198 (929)
Q Consensus       122 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~-l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~  198 (929)
                      ++|+|++|.+++..+..+...  .+|++|+|++|. ++..-......++++|++|+|++|.+++.-+.++    +..+..
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l----~~~~~~  190 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWL----HELAQH  190 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHH----HHHHHH
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHH----HHHHhc
Confidence            999999999988777777764  459999999987 2210011223478999999999998865432222    223456


Q ss_pred             CCcccEEEeecccCCC----ccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCC---CCCCCcccc
Q 002376          199 LENLKVLDLTINRLAG----TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFT---GKIPGSLHN  271 (929)
Q Consensus       199 l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~---~~~p~~~~~  271 (929)
                      +++|+.|+|++|.+++    .++..+.++++|++|+|++|.+.+ +|..+ ..+++|++|.++.....   +..+..+..
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFF-KAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHH-HHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHH-hhhhHHHhhcccccccccchHHHHHHhhc
Confidence            7899999999999973    345556788999999999998874 66444 44888888888753322   344566777


Q ss_pred             cccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccc-cCchhhh
Q 002376          272 LTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGK-IPESIGN  350 (929)
Q Consensus       272 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~  350 (929)
                      +++|+.|+++++.. +.+|..+..+++|++|++++|.+....      ....+..+++|++|+++ |.+... ++.....
T Consensus       269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~------~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~  340 (592)
T 3ogk_B          269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED------HCTLIQKCPNLEVLETR-NVIGDRGLEVLAQY  340 (592)
T ss_dssp             CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH------HHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHH
T ss_pred             cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH------HHHHHHhCcCCCEEecc-CccCHHHHHHHHHh
Confidence            88888888887533 356777777888888888877753211      11224667778888877 444332 2222233


Q ss_pred             ccccccEEEec-----------CCcccccc-CCCCCCCCcccEEEeeCCCCCcccCccccC-CCCCCEEEec----CCcC
Q 002376          351 FSNELSKLYLG-----------GNHIYGKI-PASIGRLRSLTLLDLSYNSISGEIPIEIGQ-LQGLQVLGLA----GNEI  413 (929)
Q Consensus       351 ~~~~L~~L~Ls-----------~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l  413 (929)
                      ++ +|++|+|+           .|.+++.. +..+..+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+
T Consensus       341 ~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          341 CK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             CT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             CC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence            43 67777777           35555331 222334677777777777777666555554 6777777775    5666


Q ss_pred             CCC-----CcccccCCCCCceecccCc--ccccccCccccc-ccccceecccCCcCCCCCCCCcccCCchhhhcccCccE
Q 002376          414 PGG-----IPNSLANLKKLNQIDLSGN--ELTGEIPISFGN-FQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT  485 (929)
Q Consensus       414 ~~~-----~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~  485 (929)
                      ++.     ++..+.++++|++|+|++|  .+++..+..+.. +++|+.|++++|++++..       ++..+..+++|+.
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-------~~~~~~~~~~L~~  492 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG-------LMEFSRGCPNLQK  492 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH-------HHHHHTCCTTCCE
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH-------HHHHHhcCcccCe
Confidence            653     3334555667777777533  244443333332 566666666666665311       1333455566666


Q ss_pred             EEecCCCCCCC-CCcchhcCcCcceeecccccccccCCccc-cCCCCCCEEECCC
Q 002376          486 IDLSDNSLSGN-LPNSLKNCKSLEELLMAYNQFSGPIPNIV-AELKGLEVLDLSS  538 (929)
Q Consensus       486 LdLs~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~  538 (929)
                      |+|++|.+++. ++..+..+++|++|+|++|+++..--..+ ..++.+....+..
T Consensus       493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred             eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence            66666665433 23333456666666666666654322222 2345554444443

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.97  E-value=5.5e-33  Score=301.30  Aligned_cols=238  Identities=22%  Similarity=0.246  Sum_probs=165.7

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||.||+|++.                      ...+.+.+|++++++++||||+++++++....  
T Consensus        17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~--   94 (291)
T 1u46_A           17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP--   94 (291)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC--
Confidence            357888999999999999998642                      01356889999999999999999999986432  


Q ss_pred             CcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                          .++||||+++|+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+
T Consensus        95 ----~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~  167 (291)
T 1u46_A           95 ----MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGL  167 (291)
T ss_dssp             ----CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTT
T ss_pred             ----ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEccccc
Confidence                689999999999999886432         2367899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      ++.......   .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .     ......
T Consensus       168 ~~~~~~~~~---~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~--~-----~~~~~~  237 (291)
T 1u46_A          168 MRALPQNDD---HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--S-----QILHKI  237 (291)
T ss_dssp             CEECCC-CC---EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH--H-----HHHHHH
T ss_pred             ccccccccc---chhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH--H-----HHHHHH
Confidence            987642211   1111233467889999999998889999999999977766544 3333222211  1     111111


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ...... .......+..+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus       238 ~~~~~~-~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~  286 (291)
T 1u46_A          238 DKEGER-LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTD  286 (291)
T ss_dssp             HTSCCC-CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC---
T ss_pred             HccCCC-CCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccc
Confidence            000000 0000111222333777999999999999999999999876543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=8.6e-32  Score=321.85  Aligned_cols=230  Identities=20%  Similarity=0.228  Sum_probs=165.9

Q ss_pred             eeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      +.||+|+||+||+|.+.                    ...++|.+|++++++++|||||+++++|...      ..++||
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~------~~~lv~  448 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE------SWMLVM  448 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESS------SEEEEE
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC------CEEEEE
Confidence            47999999999998432                    1246899999999999999999999998431      278999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      |||++|+|.++++..+        .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+|+.+..... 
T Consensus       449 E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~-  524 (635)
T 4fl3_A          449 EMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADEN-  524 (635)
T ss_dssp             ECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC----
T ss_pred             EccCCCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCcc-
Confidence            9999999999987433        3467999999999998   999999999999999999999999999987643211 


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                        .........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .     .+.........  ...
T Consensus       525 --~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~--~-----~~~~~i~~~~~--~~~  593 (635)
T 4fl3_A          525 --YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--S-----EVTAMLEKGER--MGC  593 (635)
T ss_dssp             ------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH--H-----HHHHHHHTTCC--CCC
T ss_pred             --ccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH--H-----HHHHHHHcCCC--CCC
Confidence              1112233457889999999999999999999999987776543 3333322221  1     11111111100  000


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      +...+.-+.+++.+||+.||++||++++|+++|+++....
T Consensus       594 p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l  633 (635)
T 4fl3_A          594 PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDV  633 (635)
T ss_dssp             CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence            0111122233777999999999999999999999987654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.4e-32  Score=304.17  Aligned_cols=219  Identities=21%  Similarity=0.283  Sum_probs=165.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------------cHHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      .++|+..+.||+|+||.||+|++..                        ..+.+.+|+.++++++||||+++++++..  
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~--  100 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN--  100 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC--
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee--
Confidence            4578999999999999999996541                        12356789999999999999999999854  


Q ss_pred             CCCcceEEEEEEecCCC-Cccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          716 SKNMEFLALVYEFLSNG-SLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~g-sL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                         ....++||||+.+| +|.+++....        .++.|++.||+|||+.   +|+||||||+||++++++.+||+||
T Consensus       101 ---~~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Df  174 (335)
T 3dls_A          101 ---QGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDF  174 (335)
T ss_dssp             ---SSEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCC
T ss_pred             ---CCEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeec
Confidence               34589999999777 9998886443        3467999999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      |+++.....       ......+||+.|+|||++.+..+ +.++||||+|++++++.....++..    ..+....... 
T Consensus       175 g~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~----~~~~~~~~~~-  242 (335)
T 3dls_A          175 GSAAYLERG-------KLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCE----LEETVEAAIH-  242 (335)
T ss_dssp             TTCEECCTT-------CCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSS----GGGGTTTCCC-
T ss_pred             ccceECCCC-------CceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhh----HHHHHhhccC-
Confidence            999865321       12234579999999999988886 8899999999776665443333221    1111111110 


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR  909 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~  909 (929)
                             .....++.    +.+++.+||+.||++|||++|+++.
T Consensus       243 -------~~~~~~~~----l~~li~~~L~~dP~~Rps~~ell~h  275 (335)
T 3dls_A          243 -------PPYLVSKE----LMSLVSGLLQPVPERRTTLEKLVTD  275 (335)
T ss_dssp             -------CSSCCCHH----HHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred             -------CCcccCHH----HHHHHHHHccCChhhCcCHHHHhcC
Confidence                   00011122    2337779999999999999999874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.97  E-value=9.5e-33  Score=306.96  Aligned_cols=221  Identities=27%  Similarity=0.317  Sum_probs=162.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +.|+..+.||+|+||.||+|+...                   ..+++.+|++++++++|||||++++++...     ..
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-----~~  128 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-----HT  128 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-----Ce
Confidence            357888999999999999987531                   125688999999999999999999998643     34


Q ss_pred             EEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||++ |++.+++...         ..++.|++.||+|||+.   +|+||||||+|||+++++.+||+|||+++..
T Consensus       129 ~~lv~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~  204 (348)
T 1u5q_A          129 AWLVMEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIM  204 (348)
T ss_dssp             EEEEEECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSS
T ss_pred             EEEEEecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceec
Confidence            899999997 6887777422         13467899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ..          .....||+.|+|||++.   ++.++.++||||+|++++++.....++.....  .+.+. .+......
T Consensus       205 ~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~--~~~~~-~~~~~~~~  271 (348)
T 1u5q_A          205 AP----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALY-HIAQNESP  271 (348)
T ss_dssp             SS----------BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHH-HHHHSCCC
T ss_pred             CC----------CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh--HHHHH-HHHhcCCC
Confidence            21          12357999999999984   56789999999999877776554433322211  01000 01110000


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ......    ....+++++.+||+.||++|||++|+++
T Consensus       272 -~~~~~~----~~~~l~~li~~~l~~dP~~Rps~~~ll~  305 (348)
T 1u5q_A          272 -ALQSGH----WSEYFRNFVDSCLQKIPQDRPTSEVLLK  305 (348)
T ss_dssp             -CCCCTT----SCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -CCCCCC----CCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence             000011    1222334777999999999999999874

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=5.4e-32  Score=298.81  Aligned_cols=231  Identities=24%  Similarity=0.322  Sum_probs=171.2

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||.||+|+..                   ...+.+.+|+++++++ +||||+++++++...     .
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-----~   99 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----G   99 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-----T
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC-----C
Confidence            57888999999999999998653                   1235688999999999 899999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          721 FLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                      ..++||||+++|+|.+++...+                        .++.|++.||+|||+.   +|+||||||+||+++
T Consensus       100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~  176 (327)
T 1fvr_A          100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG  176 (327)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred             ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence            5899999999999999986432                        2357899999999998   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~  855 (929)
                      .++.+||+|||+++.....       .......+++.|+|||++.+..++.++||||+|++++++.. ...++.....  
T Consensus       177 ~~~~~kL~Dfg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~--  247 (327)
T 1fvr_A          177 ENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--  247 (327)
T ss_dssp             GGGCEEECCTTCEESSCEE-------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH--
T ss_pred             CCCeEEEcccCcCcccccc-------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcH--
Confidence            9999999999999743211       11223357889999999988889999999999987776543 3333322211  


Q ss_pred             hhccChHHHHhhccc--chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          856 LQVLDPELRQLMTSN--ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      .     .+.......  .......++    .+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus       248 ~-----~~~~~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~  302 (327)
T 1fvr_A          248 A-----ELYEKLPQGYRLEKPLNCDD----EVYDLMRQCWREKPYERPSFAQILVSLNRMLEER  302 (327)
T ss_dssp             H-----HHHHHGGGTCCCCCCTTBCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred             H-----HHHHHhhcCCCCCCCCCCCH----HHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence            1     111111110  001111112    2233777999999999999999999999987754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.97  E-value=1.5e-31  Score=287.76  Aligned_cols=227  Identities=25%  Similarity=0.248  Sum_probs=166.6

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+|...                ...+.+.+|++++++++||||+++++++...     ...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~~   82 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDN-----TDIY   82 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----SEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecC-----CeEE
Confidence            357888999999999999998764                2356899999999999999999999998543     3489


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla~~~  792 (929)
                      +||||+++|+|.+++...+        .++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+++..
T Consensus        83 lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~  159 (277)
T 3f3z_A           83 LVMELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARF  159 (277)
T ss_dssp             EEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred             EEEeccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceec
Confidence            9999999999998876432        3467899999999998   99999999999999   78899999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       .......||+.|+|||++.+. ++.++||||+|++++++.....++.....  .+... .+..   ....
T Consensus       160 ~~~-------~~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~-~~~~---~~~~  225 (277)
T 3f3z_A          160 KPG-------KMMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTD--SEVML-KIRE---GTFT  225 (277)
T ss_dssp             CTT-------SCBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHH-HHHH---CCCC
T ss_pred             cCc-------cchhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCH--HHHHH-HHHh---CCCC
Confidence            321       112334799999999998654 99999999999777665544333322211  11111 1111   0000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........+...+.+++.+|++.||++|||+.|+++
T Consensus       226 ~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~  261 (277)
T 3f3z_A          226 FPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALE  261 (277)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             CCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence            000000011222334777999999999999999975

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=3.3e-32  Score=296.76  Aligned_cols=237  Identities=25%  Similarity=0.352  Sum_probs=163.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCC--------
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS--------  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~--------  716 (929)
                      .++|+..+.||+|+||.||+|+...               ..+.+.+|+.++++++||||+++++++.+...        
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV   84 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence            4578899999999999999997541               24578899999999999999999998865321        


Q ss_pred             CCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                      ......++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||
T Consensus        85 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl~dfg  161 (303)
T 1zy4_A           85 KKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKIGDFG  161 (303)
T ss_dssp             -CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCC
T ss_pred             ccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEEeeCc
Confidence            22456899999999999999986322         2367899999999998   99999999999999999999999999


Q ss_pred             cccccccccCCC--------CCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhh
Q 002376          788 LARFLLERVDNQ--------SSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQ  857 (929)
Q Consensus       788 la~~~~~~~~~~--------~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~  857 (929)
                      +++.........        ..........||+.|+|||++.+. .++.++||||+|++++++..     +..+. ...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-----p~~~~~~~~~  236 (303)
T 1zy4_A          162 LAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY-----PFSTGMERVN  236 (303)
T ss_dssp             CCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS-----CCSSHHHHHH
T ss_pred             chhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh-----ccCCchhHHH
Confidence            998653211000        001122345799999999999865 68999999999987777543     11111 0000


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .. ..+...   ...............+++++.+||+.||++|||++|+++
T Consensus       237 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  283 (303)
T 1zy4_A          237 IL-KKLRSV---SIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN  283 (303)
T ss_dssp             HH-HHHHST---TCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HH-Hhcccc---ccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence            00 011110   000001111111222334777999999999999999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=1e-31  Score=294.03  Aligned_cols=240  Identities=18%  Similarity=0.170  Sum_probs=164.5

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ..++|+..+.||+|+||.||+|+...                   ..+.+.+|+.++++++||||+++++++...     
T Consensus        32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-----  106 (309)
T 2h34_A           32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID-----  106 (309)
T ss_dssp             --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----
T ss_pred             EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC-----
Confidence            35789999999999999999987541                   125688999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++||||+++++|.++++...        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       107 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          107 GQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASA  183 (309)
T ss_dssp             TEEEEEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC---
T ss_pred             CeEEEEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcc
Confidence            35899999999999999986432        3467899999999998   999999999999999999999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      .....     ........||+.|+|||++.+..++.++||||+|++++++.....++....   ...+...+........
T Consensus       184 ~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---~~~~~~~~~~~~~~~~  255 (309)
T 2h34_A          184 TTDEK-----LTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ---LSVMGAHINQAIPRPS  255 (309)
T ss_dssp             ------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH---HHHHHHHHHSCCCCGG
T ss_pred             ccccc-----cccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch---HHHHHHHhccCCCCcc
Confidence            53221     111234578999999999999999999999999977666544333322111   1111111111110000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHhhHHHHh
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRI-GIREALRRLKSSQEILL  918 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~ev~~~L~~~~~~~~  918 (929)
                      ......++    .+.+++.+||+.||++|| +++++++.|++..+...
T Consensus       256 ~~~~~~~~----~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~  299 (309)
T 2h34_A          256 TVRPGIPV----AFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD  299 (309)
T ss_dssp             GTSTTCCT----HHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred             ccCCCCCH----HHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence            11111122    233377799999999999 99999999998765543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5e-32  Score=314.80  Aligned_cols=243  Identities=21%  Similarity=0.221  Sum_probs=169.5

Q ss_pred             CCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEE
Q 002376          327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL  406 (929)
Q Consensus       327 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  406 (929)
                      +++|++|+|++|.+++..|..+..++ +|++|+|++|.+++..|  |+.+++|++|+|++|.|++..+     .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence            34777888888888776666777766 68888888888877665  7778888888888887774332     3778888


Q ss_pred             EecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhh-cccCccE
Q 002376          407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEIS-RLENVVT  485 (929)
Q Consensus       407 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~-~l~~L~~  485 (929)
                      ++++|.|++..+.   .+++|+.|+|++|.+++..|..|+++++|+.|+|++|.|++.+        |..+. .+++|+.
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~~l~~L~~  173 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------FAELAASSDTLEH  173 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE--------GGGGGGGTTTCCE
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC--------hHHHhhhCCcccE
Confidence            8888888765554   3467788888888888777777777888888888888877654        44444 5677888


Q ss_pred             EEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcC
Q 002376          486 IDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNL  565 (929)
Q Consensus       486 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  565 (929)
                      |+|++|.+++..+  +..+++|+.|+|++|+|++.+|. +..+++|+.|||++|+|++ +|..+..+++|+.|++++|++
T Consensus       174 L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          174 LNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             EECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred             EecCCCccccccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence            8888888776522  33577788888888888765544 7777888888888888875 666777777888888888887


Q ss_pred             c-ccCCCC-CCCCCCCccccc-------CCCCCcCC
Q 002376          566 E-GVVPSE-GIFRNMSNVHLK-------GNPKLCLQ  592 (929)
Q Consensus       566 ~-~~~p~~-~~~~~l~~l~l~-------~N~~~c~~  592 (929)
                      . +.+|.. ..++.+..+.+.       +|+..|..
T Consensus       250 ~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~  285 (487)
T 3oja_A          250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTV  285 (487)
T ss_dssp             CHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred             cCcchHHHHHhCCCCcEEeccccccccCCCcccccC
Confidence            7 333321 223334444443       56666643

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.97  E-value=1.7e-31  Score=288.50  Aligned_cols=228  Identities=23%  Similarity=0.295  Sum_probs=166.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|....                  ..+.+.+|++++++++||||+++++++..     ...
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~   79 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----ESF   79 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-----CCE
Confidence            4689999999999999999986541                  23568899999999999999999999854     334


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc---eEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT---AKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~---~ki~DfGla~  790 (929)
                      .++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||+++
T Consensus        80 ~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~  156 (284)
T 3kk8_A           80 HYLVFDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAI  156 (284)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCE
T ss_pred             EEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeE
Confidence            799999999999988775432        3467899999999998   9999999999999986654   9999999997


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+... .+....   
T Consensus       157 ~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~--~~~~~-~~~~~~---  223 (284)
T 3kk8_A          157 EVNDS-------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ--HRLYA-QIKAGA---  223 (284)
T ss_dssp             ECCSS-------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHH-HHHHTC---
T ss_pred             EcccC-------ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch--hHHHH-HHHhcc---
Confidence            65321       112335799999999999999999999999999776665444333322111  11111 111100   


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..........+...+.+++.+|++.||++|||++|+++
T Consensus       224 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (284)
T 3kk8_A          224 YDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALK  261 (284)
T ss_dssp             CCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             ccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            00000000111222334777999999999999999986

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.97  E-value=2.3e-32  Score=301.74  Aligned_cols=239  Identities=19%  Similarity=0.204  Sum_probs=170.4

Q ss_pred             CCCChHHHHHhhCCCCCc-eeecccCceeEEeccccC------------------cHHHHHHHHHHHHccC-Ccccccee
Q 002376          649 PKISYDELRRATGNFSHE-NLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVR-HRNLVKLI  708 (929)
Q Consensus       649 ~~~~~~~l~~~~~~~~~~-~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~-Hpniv~l~  708 (929)
                      +.+.++..+...+.|... +.||+|+||.||+|+...                  ..+.+.+|+.++++++ ||||++++
T Consensus        16 ~n~~~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~   95 (327)
T 3lm5_A           16 ENLYFQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLH   95 (327)
T ss_dssp             CCCCSBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEE
T ss_pred             hhhHHHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEE
Confidence            344455555566677776 889999999999986541                  2467899999999995 69999999


Q ss_pred             eecccCCCCCcceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-
Q 002376          709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-  777 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-  777 (929)
                      +++..     ....++||||+++|+|.+++...          ..++.|++.||+|||+.   +|+||||||+||+++. 
T Consensus        96 ~~~~~-----~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~  167 (327)
T 3lm5_A           96 EVYEN-----TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSI  167 (327)
T ss_dssp             EEEEC-----SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCB
T ss_pred             EEEEe-----CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecC
Confidence            99854     34489999999999999998532          13367899999999998   9999999999999987 


Q ss_pred             --CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchh
Q 002376          778 --EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENV  855 (929)
Q Consensus       778 --~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~  855 (929)
                        ++.+||+|||+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  
T Consensus       168 ~~~~~~kL~Dfg~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--  238 (327)
T 3lm5_A          168 YPLGDIKIVDFGMSRKIGHA-------CELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN--  238 (327)
T ss_dssp             TTBCCEEECCGGGCEEC----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--
T ss_pred             CCCCcEEEeeCccccccCCc-------cccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc--
Confidence              789999999999875321       112335799999999999999999999999999777665544333322111  


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+... .+...   ...........+...+.+++.+||+.||++|||++|+++
T Consensus       239 ~~~~~-~i~~~---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~  287 (327)
T 3lm5_A          239 QETYL-NISQV---NVDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLS  287 (327)
T ss_dssp             HHHHH-HHHHT---CCCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred             hHHHH-HHHhc---ccccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence            11000 01110   000011111112223334777999999999999999975

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.97  E-value=4.8e-32  Score=315.63  Aligned_cols=223  Identities=24%  Similarity=0.318  Sum_probs=166.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...++||+|+||+||+|+...                   ..+.+.+|++++++++|||||++++++.+     ..
T Consensus       184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-----~~  258 (543)
T 3c4z_A          184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET-----KT  258 (543)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred             hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-----CC
Confidence            3578888999999999999987641                   23567899999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      ..|+||||+++|+|.+++....            .++.||+.||+|||+.   +|+||||||+|||++.+|.+||+|||+
T Consensus       259 ~l~lVmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGl  335 (543)
T 3c4z_A          259 DLCLVMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGL  335 (543)
T ss_dssp             EEEEEECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTT
T ss_pred             EEEEEEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecce
Confidence            5899999999999998886422            2357899999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH-hh
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ-LM  867 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  867 (929)
                      ++.+...      .......+||+.|||||++.+..++.++||||+|+++|++..+..++......   .....+.. ..
T Consensus       336 a~~~~~~------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~---~~~~~~~~~i~  406 (543)
T 3c4z_A          336 AVELKAG------QTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK---VENKELKQRVL  406 (543)
T ss_dssp             CEECCTT------CCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC---CCHHHHHHHHH
T ss_pred             eeeccCC------CcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc---hhHHHHHHHHh
Confidence            9875321      11123458999999999999999999999999998877766554444322110   00011111 11


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      .......    ..++..+++++.+|++.||++||++
T Consensus       407 ~~~~~~p----~~~s~~~~~li~~lL~~dP~~R~~~  438 (543)
T 3c4z_A          407 EQAVTYP----DKFSPASKDFCEALLQKDPEKRLGF  438 (543)
T ss_dssp             HCCCCCC----TTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred             hcccCCC----cccCHHHHHHHHHhccCCHhHCCCC
Confidence            1111111    1122333447779999999999975

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.97  E-value=4.3e-32  Score=294.83  Aligned_cols=225  Identities=21%  Similarity=0.258  Sum_probs=168.8

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...+.||+|+||.||+++...                   ..+.+.+|+.++++++||||+++++++.+     ..
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~   88 (294)
T 2rku_A           14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-----ND   88 (294)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred             ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc-----CC
Confidence            3578889999999999999987641                   23568899999999999999999999854     33


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        89 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~  165 (294)
T 2rku_A           89 FVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKV  165 (294)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceec
Confidence            5899999999999999876322        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...      ........||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.    ..........
T Consensus       166 ~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~----~~~~~~~~~~  233 (294)
T 2rku_A          166 EYD------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL--KET----YLRIKKNEYS  233 (294)
T ss_dssp             CST------TCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHH----HHHHHTTCCC
T ss_pred             ccC------ccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHH----HHHHhhccCC
Confidence            321      1112335799999999999999999999999999877765544433322211  110    1111111111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...    .+...+.+++.+||+.||++|||++|+++
T Consensus       234 ~~~----~~~~~~~~li~~~l~~~p~~Rps~~~ll~  265 (294)
T 2rku_A          234 IPK----HINPVAASLIQKMLQTDPTARPTINELLN  265 (294)
T ss_dssp             CCT----TSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             Ccc----ccCHHHHHHHHHHcccChhhCcCHHHHhh
Confidence            111    11222334777999999999999999986

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.97  E-value=2.9e-32  Score=298.69  Aligned_cols=173  Identities=25%  Similarity=0.330  Sum_probs=137.4

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||.||+|+...                  ..+.+.+|++++++++||||+++++++...     ...
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~   77 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK-----RRL   77 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC-----CeE
Confidence            578899999999999999987641                  135678999999999999999999998543     348


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||+++++|.++++..+        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        78 ~lv~e~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  154 (311)
T 4agu_A           78 HLVFEYCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTG  154 (311)
T ss_dssp             EEEEECCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC-
T ss_pred             EEEEEeCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccC
Confidence            99999999999988876332        3467899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ..      .......||+.|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       155 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p  202 (311)
T 4agu_A          155 PS------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPL  202 (311)
T ss_dssp             -----------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cc------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence            11      11234478999999999876 5689999999999877776554433

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=2.3e-32  Score=321.38  Aligned_cols=238  Identities=24%  Similarity=0.318  Sum_probs=176.2

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ...++|+..+.||+|+||.||+|++..              ..++|.+|+++|++++|||||++++++..      ...+
T Consensus       264 i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~~~~  337 (535)
T 2h8h_A          264 IPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPIY  337 (535)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSCE
T ss_pred             cchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCCEeeEEEEEee------ccce
Confidence            345678888999999999999987652              34689999999999999999999999854      2379


Q ss_pred             EEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|||||++|+|.++++...          .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+++...
T Consensus       338 lv~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~  414 (535)
T 2h8h_A          338 IVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIE  414 (535)
T ss_dssp             EEECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCC
T ss_pred             EeeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecC
Confidence            9999999999999997421          2367899999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...     ........++..|||||++.+..++.++||||+|++++++.. ...++.....  .+     +...+.... 
T Consensus       415 ~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~--~~-----~~~~i~~~~-  481 (535)
T 2h8h_A          415 DNE-----YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN--RE-----VLDQVERGY-  481 (535)
T ss_dssp             CHH-----HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH--HH-----HHHHHHTTC-
T ss_pred             CCc-----eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH--HH-----HHHHHHcCC-
Confidence            211     011122357889999999999999999999999987777554 3322221111  11     111111100 


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                       +..........+.+++.+||+.||++|||++++++.|+++.....
T Consensus       482 -~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~  526 (535)
T 2h8h_A          482 -RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  526 (535)
T ss_dssp             -CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred             -CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence             000001112223337779999999999999999999998765443

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.97  E-value=7.3e-33  Score=312.72  Aligned_cols=248  Identities=19%  Similarity=0.279  Sum_probs=168.2

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCC--------
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS--------  716 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~--------  716 (929)
                      ....++|+..+.||+|+||.||+|++..            +.+...+|+++++.++|||||++++++.....        
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~~~~   82 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKPPQP   82 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHTTCCCTTBCCEEEEEEEC----------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcchHHHHHHHHHHcCCCCccchhheeeecCccccccccc
Confidence            4456789999999999999999997642            22345589999999999999999999865432        


Q ss_pred             -------------------------CCcceEEEEEEecCCCCccccccc------------cccccccHHHHHHHhhhCC
Q 002376          717 -------------------------KNMEFLALVYEFLSNGSLGDWIHG------------ERKNELDITSALDYLHNDC  759 (929)
Q Consensus       717 -------------------------~~~~~~~lV~e~~~~gsL~~~l~~------------~~~~~~~ia~aL~yLH~~~  759 (929)
                                               ....+.++||||++ |+|.+.++.            .+.++.|+++||+|||+. 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~-  160 (383)
T 3eb0_A           83 PDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSL-  160 (383)
T ss_dssp             ---------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred             ccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC-
Confidence                                     23345899999998 587776652            123467999999999998 


Q ss_pred             CCCEEecCCCCCCeeec-CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCC
Q 002376          760 EVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESF  837 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~  837 (929)
                        +|+||||||+||+++ .++.+||+|||+|+.+...       .......||+.|+|||++.+.. ++.++||||+|++
T Consensus       161 --gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  231 (383)
T 3eb0_A          161 --GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPS-------EPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCV  231 (383)
T ss_dssp             --TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTT-------SCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHH
T ss_pred             --cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCC-------CCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHH
Confidence              999999999999998 6889999999999865322       1123347899999999988755 8999999999988


Q ss_pred             CCCcchhHHhhhcCCc--hhhhccC----h---HHHHhhc--------c--cchhhhhhhHHHHHHHHHHhccccCCCCC
Q 002376          838 AGEFNIVKWVESNLPE--NVLQVLD----P---ELRQLMT--------S--NESQTIQLHDCLITIIGSVGLSCTTESPG  898 (929)
Q Consensus       838 ~~~~~~~~~~~~~~~~--~~~~~~~----~---~l~~~~~--------~--~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~  898 (929)
                      ++++.....++.....  ...+++.    +   .+...-.        .  ........++..+..+.+++.+||+.||+
T Consensus       232 l~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~  311 (383)
T 3eb0_A          232 FGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPD  311 (383)
T ss_dssp             HHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGG
T ss_pred             HHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChh
Confidence            8776655444332211  1111100    0   0000000        0  00000000111122233488899999999


Q ss_pred             CCCCHHHHHH--HHHhhHH
Q 002376          899 GRIGIREALR--RLKSSQE  915 (929)
Q Consensus       899 ~RPs~~ev~~--~L~~~~~  915 (929)
                      +|||+.|+++  .+++++.
T Consensus       312 ~R~t~~e~l~hp~f~~~~~  330 (383)
T 3eb0_A          312 LRINPYEAMAHPFFDHLRN  330 (383)
T ss_dssp             GSCCHHHHHTSGGGHHHHH
T ss_pred             hCCCHHHHhcCHHHHHHHh
Confidence            9999999984  4555544

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.97  E-value=9.3e-32  Score=302.19  Aligned_cols=178  Identities=24%  Similarity=0.276  Sum_probs=136.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||.||+|....                  ..+.+.+|+.+++.++||||+++++++...+. ....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            4689999999999999999986541                  13568899999999999999999999865432 1234


Q ss_pred             eEEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ..|+||||++ |+|.+++...      ..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+++....
T Consensus       104 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~  179 (371)
T 2xrw_A          104 DVYIVMELMD-ANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT  179 (371)
T ss_dssp             EEEEEEECCS-EEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC------
T ss_pred             ceEEEEEcCC-CCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeeccccccc
Confidence            6899999997 5787776522      23467999999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .       ......+||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       180 ~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf  226 (371)
T 2xrw_A          180 S-------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLF  226 (371)
T ss_dssp             -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred             c-------cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence            1       1123457999999999999999999999999998887766554433

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.9e-32  Score=304.45  Aligned_cols=236  Identities=22%  Similarity=0.285  Sum_probs=162.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||.||+|.+..                  ..+++.+|++++++++||||+++++++...+. ....
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            4678999999999999999987541                  13567899999999999999999999875432 1123


Q ss_pred             eEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ..|+||||+ +++|.++++...       .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~  179 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  179 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecccccc
Confidence            469999999 789998886422       3467999999999998   99999999999999999999999999998642


Q ss_pred             cccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc------------
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV------------  858 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~------------  858 (929)
                      .         .....+||+.|+|||++.+ ..++.++||||+|++++++..+..++.....  .+..+            
T Consensus       180 ~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~  250 (367)
T 1cm8_A          180 S---------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV  250 (367)
T ss_dssp             S---------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             c---------ccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHH
Confidence            1         1233578999999999887 6799999999999887776555443322111  01000            


Q ss_pred             ---cChHHHHhhc---ccchhh-hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          859 ---LDPELRQLMT---SNESQT-IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       859 ---~~~~l~~~~~---~~~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         ..........   ...... ..........+.+++.+|++.||++|||++|+++
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~  307 (367)
T 1cm8_A          251 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA  307 (367)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             HHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence               0000110000   000000 0000011222334778999999999999999986

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.97  E-value=1.7e-32  Score=307.22  Aligned_cols=173  Identities=23%  Similarity=0.359  Sum_probs=143.6

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..+.||+|+||.||++++..                 ..+.+.+|++++++++||||+++++++...     ...+
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~  107 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-----GEIS  107 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET-----TEEE
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC-----CEEE
Confidence            578889999999999999987651                 135788999999999999999999998643     3489


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+++|+|.++++...        .++.+++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++.....
T Consensus       108 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~  185 (360)
T 3eqc_A          108 ICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS  185 (360)
T ss_dssp             EEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc
Confidence            9999999999999987432        34678999999999832  7999999999999999999999999999765321


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                              ......||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       186 --------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf  230 (360)
T 3eqc_A          186 --------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI  230 (360)
T ss_dssp             --------C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCS
T ss_pred             --------cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                    123357999999999999999999999999998887766555444

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.97  E-value=4.3e-32  Score=300.59  Aligned_cols=225  Identities=21%  Similarity=0.264  Sum_probs=169.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...+.||+|+||.||++++..                   ..+.+.+|+.++++++||||+++++++.+.     .
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~  114 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDN-----D  114 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----S
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC-----C
Confidence            4578889999999999999987541                   235688999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus       115 ~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~  191 (335)
T 2owb_A          115 FVFVVLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKV  191 (335)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEEC
T ss_pred             eEEEEEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceec
Confidence            5899999999999999876422        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...      ........||+.|+|||++.+..++.++||||+|++++++.....++.....  .+... .+..   ....
T Consensus       192 ~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~-~~~~---~~~~  259 (335)
T 2owb_A          192 EYD------GERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL--KETYL-RIKK---NEYS  259 (335)
T ss_dssp             CST------TCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHH-HHHH---TCCC
T ss_pred             ccC------cccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH--HHHHH-HHhc---CCCC
Confidence            321      1112345799999999999999999999999999877776544433322111  11110 1111   0111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..    ..+...+.+++.+||+.||++||+++|+++
T Consensus       260 ~~----~~~~~~~~~li~~~l~~dp~~Rps~~ell~  291 (335)
T 2owb_A          260 IP----KHINPVAASLIQKMLQTDPTARPTINELLN  291 (335)
T ss_dssp             CC----TTSCHHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred             CC----ccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11    111222334777999999999999999986

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.97  E-value=1e-31  Score=323.49  Aligned_cols=221  Identities=23%  Similarity=0.285  Sum_probs=166.7

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|+..++||+|+||+||+|+...                   ..+.+.+|..++..+ +||+|+++++++.+     
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~-----  413 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT-----  413 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBC-----
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEe-----
Confidence            35689999999999999999987652                   234577899999988 79999999999854     


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...+|+||||+++|+|.++++...        .++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+|+
T Consensus       414 ~~~~~lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~  490 (674)
T 3pfq_A          414 MDRLYFVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCK  490 (674)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCE
T ss_pred             CCEEEEEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceee
Confidence            345899999999999999987432        3467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....      .......+||+.|||||++.+..++.++||||+|+++|++.....++.....  .+++    .......
T Consensus       491 ~~~~~------~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~--~~~~----~~i~~~~  558 (674)
T 3pfq_A          491 ENIWD------GVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE--DELF----QSIMEHN  558 (674)
T ss_dssp             ECCCT------TCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHH----HHHHSSC
T ss_pred             ccccC------CcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH--HHHH----HHHHhCC
Confidence            53211      1223456899999999999999999999999999887776555444432211  1111    1111111


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGI  903 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~  903 (929)
                      ....    ..+...+.+++.+|++.||++||++
T Consensus       559 ~~~p----~~~s~~~~~li~~lL~~dP~~R~~~  587 (674)
T 3pfq_A          559 VAYP----KSMSKEAVAICKGLMTKHPGKRLGC  587 (674)
T ss_dssp             CCCC----TTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred             CCCC----ccCCHHHHHHHHHHccCCHHHCCCC
Confidence            1111    1122233347779999999999997

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.4e-32  Score=303.74  Aligned_cols=228  Identities=23%  Similarity=0.319  Sum_probs=159.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCC--ccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRH--RNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~H--pniv~l~~~~~~~~~~~~~  720 (929)
                      .+.|+..+.||+|+||.||++....                 ..+.+.+|++++++++|  |||+++++++...     .
T Consensus         8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~-----~   82 (343)
T 3dbq_A            8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-----Q   82 (343)
T ss_dssp             SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----S
T ss_pred             cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC-----C
Confidence            4568899999999999999986541                 13578899999999986  9999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++|||| .+|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++ ++.+||+|||+++..
T Consensus        83 ~~~lv~e~-~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~  157 (343)
T 3dbq_A           83 YIYMVMEC-GNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQM  157 (343)
T ss_dssp             EEEEEECC-CSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC
T ss_pred             EEEEEEeC-CCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeeccccccc
Confidence            58999995 5789999987433        3467899999999998   999999999999997 578999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCC-----------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLG-----------ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      ....    ........+||+.|+|||++.+           ..++.++||||+|++++++.....++........     
T Consensus       158 ~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~-----  228 (343)
T 3dbq_A          158 QPDT----TSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-----  228 (343)
T ss_dssp             ----------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHH-----
T ss_pred             Cccc----ccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHH-----
Confidence            4221    1112234579999999999864           6789999999999887776555444432222110     


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+........  ....+......+.+++.+||+.||++|||++|+++
T Consensus       229 ~~~~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~  273 (343)
T 3dbq_A          229 KLHAIIDPNH--EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  273 (343)
T ss_dssp             HHHHHHCTTS--CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHhcCCc--ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHh
Confidence            0111110000  00000111112233777999999999999999975

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.97  E-value=4.9e-32  Score=303.80  Aligned_cols=182  Identities=22%  Similarity=0.298  Sum_probs=146.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|+...                 ..+.+.+|++++++++||||+++++++...........
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            4689999999999999999986541                 13578899999999999999999999976554444568


Q ss_pred             EEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||++ |+|.++++...       .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       106 ~iv~e~~~-~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~  181 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  181 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EEEEcccC-cCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEecCCC
Confidence            99999997 58988876432       3467999999999998   9999999999999999999999999999876432


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ...   .......+||+.|+|||++.+. .++.++||||+|++++++.....++
T Consensus       182 ~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  232 (364)
T 3qyz_A          182 HDH---TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIF  232 (364)
T ss_dssp             GCB---CCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             CCc---cccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCC
Confidence            111   1112345899999999987654 4899999999998877765544333

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=6.9e-32  Score=296.58  Aligned_cols=244  Identities=20%  Similarity=0.160  Sum_probs=170.7

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+++..                ...+.+.+|++++++++||||+++++++.... ......+
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~~~~~  106 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRER-GAKHEAW  106 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEE-TTEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEecc-CCCceeE
Confidence            457889999999999999998753                12457889999999999999999999986432 2344689


Q ss_pred             EEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +||||+++|+|.+++...            ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~  183 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQ  183 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence            999999999999988641            12367899999999998   999999999999999999999999999876


Q ss_pred             cccccCCCC---CccccceeccccccccccccCCCC---CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          792 LLERVDNQS---SISSTHVFMGSIGYVPPEYGLGER---PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       792 ~~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      .........   .........||+.|+|||++.+..   ++.++||||+|++++++.....++...... .+.+......
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-~~~~~~~~~~  262 (317)
T 2buj_A          184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQK-GDSVALAVQN  262 (317)
T ss_dssp             SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHT-TSCHHHHHHC
T ss_pred             cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcc-cchhhHHhhc
Confidence            532111000   000112346799999999987664   689999999998777655443332211000 0000000111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      ..  ........++    .+.+++.+||+.||++|||++|+++.|+++.
T Consensus       263 ~~--~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~  305 (317)
T 2buj_A          263 QL--SIPQSPRHSS----ALWQLLNSMMTVDPHQRPHIPLLLSQLEALQ  305 (317)
T ss_dssp             C----CCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHHHHHHTC
T ss_pred             cC--CCCccccCCH----HHHHHHHHHhhcChhhCCCHHHHHHHhhhcC
Confidence            00  0000111112    2333777999999999999999999999864

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.97  E-value=5.8e-33  Score=312.83  Aligned_cols=230  Identities=13%  Similarity=0.058  Sum_probs=162.8

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHH---HHHHccCCccccceeeecc-----
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAEC---ETLRNVRHRNLVKLITSCS-----  712 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~---~~l~~l~Hpniv~l~~~~~-----  712 (929)
                      .++|+..+.||+|+||.||+|++.                   ...+.|.+|+   +.+++++|||||++++.+.     
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            467888999999999999998864                   1246788999   5556668999999984433     


Q ss_pred             --cCCC---------CCc---ceEEEEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCE
Q 002376          713 --SLDS---------KNM---EFLALVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPV  763 (929)
Q Consensus       713 --~~~~---------~~~---~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~i  763 (929)
                        ..+.         .+.   ...|+||||+ +|+|.+++....               .++.||+.||+|||+.   +|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence              2210         000   1268999999 689999986311               2467999999999998   99


Q ss_pred             EecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCC-----------CCCCCCCCC
Q 002376          764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-----------RPSTAGDVP  832 (929)
Q Consensus       764 iHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DV~  832 (929)
                      +||||||+|||++.++.+||+|||+|+....         .....+| +.|+|||++.+.           .++.++|||
T Consensus       228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~---------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Dvw  297 (377)
T 3byv_A          228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA---------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAW  297 (377)
T ss_dssp             ECSCCCGGGEEECTTCCEEECCGGGCEETTC---------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHH
T ss_pred             ecCCCCHHHEEEcCCCCEEEEechhheecCC---------cccCCCC-cCccChhhhcccccccccccccccCChhhhHH
Confidence            9999999999999999999999999985321         2234567 999999999887           899999999


Q ss_pred             CCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HH
Q 002376          833 TSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RL  910 (929)
Q Consensus       833 s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L  910 (929)
                      |+|++++++.....++.....  .+.... +..    ..   ...++    -+.+++.+||+.||++|||+.|+++  .+
T Consensus       298 SlG~il~elltg~~Pf~~~~~--~~~~~~-~~~----~~---~~~~~----~~~~li~~~L~~dp~~Rpt~~e~l~hp~f  363 (377)
T 3byv_A          298 ALGLVIYWIWCADLPITKDAA--LGGSEW-IFR----SC---KNIPQ----PVRALLEGFLRYPKEDRLLPLQAMETPEY  363 (377)
T ss_dssp             HHHHHHHHHHHSSCCC--------CCSGG-GGS----SC---CCCCH----HHHHHHHHHTCSSGGGCCCHHHHHTSHHH
T ss_pred             HHHHHHHHHHHCCCCCccccc--ccchhh-hhh----hc---cCCCH----HHHHHHHHHcCCCchhCCCHHHHhhChHH
Confidence            999877766544333321111  011100 000    00   01112    2233777999999999999999985  56


Q ss_pred             HhhHHHH
Q 002376          911 KSSQEIL  917 (929)
Q Consensus       911 ~~~~~~~  917 (929)
                      +++.+..
T Consensus       364 ~~~~~~~  370 (377)
T 3byv_A          364 EQLRTEL  370 (377)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=1.2e-31  Score=296.54  Aligned_cols=175  Identities=23%  Similarity=0.280  Sum_probs=144.2

Q ss_pred             CCCCCceeecccCceeEEecccc-------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||.||+|+..             ...+.+.+|++++++++ ||||+++++++....   ....++||
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~---~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDPV---SRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTT---TCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccchHHHHHHHHHHHHcCCCCCEEEeeeeeccCC---CCceEEEE
Confidence            57889999999999999999653             24678999999999997 999999999986522   34579999


Q ss_pred             EecCCCCccccccc-----cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEeccccccccccccCCCC
Q 002376          727 EFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       727 e~~~~gsL~~~l~~-----~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~~~~~~~~  800 (929)
                      ||+++++|.++++.     ...++.|++.||+|||+.   +|+||||||+|||++.++ .+||+|||+|+.....     
T Consensus       113 e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~-----  184 (330)
T 3nsz_A          113 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-----  184 (330)
T ss_dssp             ECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECCTT-----
T ss_pred             eccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCC-----
Confidence            99999999998763     224578999999999998   999999999999999776 8999999999865322     


Q ss_pred             CccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          801 SISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                        .......||..|+|||++.+ ..++.++||||+|++++++.....++
T Consensus       185 --~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~  231 (330)
T 3nsz_A          185 --QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF  231 (330)
T ss_dssp             --CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             --CccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCc
Confidence              11233478999999999887 66899999999998877765554443

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.97  E-value=2e-32  Score=307.88  Aligned_cols=244  Identities=9%  Similarity=-0.020  Sum_probs=155.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc--CCccccceee-------ec
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV--RHRNLVKLIT-------SC  711 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l--~Hpniv~l~~-------~~  711 (929)
                      ...|+..+.||+|+||.||+|++..                   ..+.+.+|+.+++.+  +||||++++.       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence            3458889999999999999997541                   134566775444444  6999888553       32


Q ss_pred             ccCCCC------------CcceEEEEEEecCCCCcccccccc--------c-------cccccHHHHHHHhhhCCCCCEE
Q 002376          712 SSLDSK------------NMEFLALVYEFLSNGSLGDWIHGE--------R-------KNELDITSALDYLHNDCEVPVV  764 (929)
Q Consensus       712 ~~~~~~------------~~~~~~lV~e~~~~gsL~~~l~~~--------~-------~~~~~ia~aL~yLH~~~~~~ii  764 (929)
                      ......            .....|+|||||+ |+|.++++..        +       .++.||+.||+|||+.   +|+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~---~iv  216 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSK---GLV  216 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---CCc
Confidence            221110            0144799999998 8999998732        1       2347999999999998   999


Q ss_pred             ecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCC--CCCCCCCCCCCCcCCCCCcc
Q 002376          765 HSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTSESFAGEFN  842 (929)
Q Consensus       765 HrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~g~~~~~~~  842 (929)
                      ||||||+|||++.++.+||+|||+|+.....         .....||+.|+|||++.+  ..++.++||||+|++++++.
T Consensus       217 HrDikp~NIll~~~~~~kL~DFG~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~ell  287 (371)
T 3q60_A          217 HGHFTPDNLFIMPDGRLMLGDVSALWKVGTR---------GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVW  287 (371)
T ss_dssp             ETTCSGGGEEECTTSCEEECCGGGEEETTCE---------EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHH
T ss_pred             cCcCCHHHEEECCCCCEEEEecceeeecCCC---------ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHH
Confidence            9999999999999999999999999865211         113467799999999987  67999999999998877766


Q ss_pred             hhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHHHH
Q 002376          843 IVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQEIL  917 (929)
Q Consensus       843 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~~~  917 (929)
                      ....++........+........... ...........++..+.+++.+||+.||++|||+.|+++  .++++....
T Consensus       288 tg~~Pf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  363 (371)
T 3q60_A          288 CLFLPFGLVTPGIKGSWKRPSLRVPG-TDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQNEI  363 (371)
T ss_dssp             HSSCSTTBCCTTCTTCCCBCCTTSCC-CCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHHHH
T ss_pred             hCCCCCCCcCcccccchhhhhhhhcc-ccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHHHH
Confidence            55544433311111111100000000 000000000011222334777999999999999999974  455554443

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.97  E-value=1.4e-31  Score=289.40  Aligned_cols=225  Identities=22%  Similarity=0.256  Sum_probs=160.3

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...+.||+|+||.||+++..                 ...+.+.+|++++++++||||+++++++..     ....+
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~   96 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-----YHNMY   96 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSEEE
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-----CCeEE
Confidence            46888999999999999988754                 134678999999999999999999999854     33489


Q ss_pred             EEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEecccc
Q 002376          724 LVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGL  788 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGl  788 (929)
                      +||||+++|+|.+++...            ..++.|++.||+|||+.   +|+||||||+||++   +.++.+||+|||+
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~  173 (285)
T 3is5_A           97 IVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGL  173 (285)
T ss_dssp             EEECCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCC
T ss_pred             EEEEeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeec
Confidence            999999999999887522            13467899999999998   99999999999999   4567899999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      ++.....       .......||+.|+|||++. +.++.++||||+|++++++.....++.....  .+.... ...   
T Consensus       174 a~~~~~~-------~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~--~~~~~~-~~~---  239 (285)
T 3is5_A          174 AELFKSD-------EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL--EEVQQK-ATY---  239 (285)
T ss_dssp             CCC-----------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH-HHH---
T ss_pred             ceecCCc-------ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCH--HHHHhh-hcc---
Confidence            9865321       1123457999999999985 5689999999999877765554433322211  111100 000   


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...............+. +++.+|++.||++|||++|+++
T Consensus       240 ~~~~~~~~~~~~~~~~~-~li~~~L~~dP~~Rps~~e~l~  278 (285)
T 3is5_A          240 KEPNYAVECRPLTPQAV-DLLKQMLTKDPERRPSAAQVLH  278 (285)
T ss_dssp             CCCCCCC--CCCCHHHH-HHHHHHTCSCTTTSCCHHHHHT
T ss_pred             CCcccccccCcCCHHHH-HHHHHHccCChhhCcCHHHHhc
Confidence            00000000000011222 3777999999999999999975

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=6.7e-32  Score=296.26  Aligned_cols=229  Identities=23%  Similarity=0.257  Sum_probs=164.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||.||+|....              ..+.+.+|+.++++++||||+++++++...     ...++
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~l  101 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQEIIKEISIMQQCDSPHVVKYYGSYFKN-----TDLWI  101 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTSCCHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeC-----CEEEE
Confidence            35679999999999999999987651              246789999999999999999999998643     34899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ||||+++|+|.+++...         ..++.+++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus       102 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~  178 (314)
T 3com_A          102 VMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDT  178 (314)
T ss_dssp             EEECCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTT
T ss_pred             EeecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhh
Confidence            99999999999988621         13367899999999998   9999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .      .......||+.|+|||++.+..++.++||||+|++++++.....++...... .. . .....    ......
T Consensus       179 ~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-~~-~-~~~~~----~~~~~~  245 (314)
T 3com_A          179 M------AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM-RA-I-FMIPT----NPPPTF  245 (314)
T ss_dssp             B------SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-HH-H-HHHHH----SCCCCC
T ss_pred             c------cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH-HH-H-HHHhc----CCCccc
Confidence            1      1123357899999999999999999999999998777655444333222110 00 0 00000    000000


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .........+.+++.+||+.||++|||+.|+++
T Consensus       246 ~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~  278 (314)
T 3com_A          246 RKPELWSDNFTDFVKQCLVKSPEQRATATQLLQ  278 (314)
T ss_dssp             SSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence            001111222334777999999999999999975

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.7e-32  Score=301.07  Aligned_cols=242  Identities=22%  Similarity=0.290  Sum_probs=168.3

Q ss_pred             CCChHHHHHhhCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHcc-CCccccceeeeccc
Q 002376          650 KISYDELRRATGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNV-RHRNLVKLITSCSS  713 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~  713 (929)
                      .+++.++....++|+..+.||+|+||.||+|++.               ...+.+.+|+.+++++ +||||+++++++..
T Consensus        13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            3455566677889999999999999999998764               2346789999999999 89999999999876


Q ss_pred             CCCC-CcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceE
Q 002376          714 LDSK-NMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAK  782 (929)
Q Consensus       714 ~~~~-~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~k  782 (929)
                      .... .....++||||+++|+|.+++...+          .++.|++.||+|||+.   +|+||||||+||+++.++.+|
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~k  169 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVK  169 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEE
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEE
Confidence            4321 1346899999999999999986432          2357899999999998   999999999999999999999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      |+|||+++.....      ........||+.|+|||++.     +..++.++||||+|++++++.....++......  +
T Consensus       170 l~Dfg~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~--~  241 (326)
T 2x7f_A          170 LVDFGVSAQLDRT------VGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM--R  241 (326)
T ss_dssp             ECCCTTTC-------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH--H
T ss_pred             EeeCcCceecCcC------ccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH--H
Confidence            9999999865321      11123357999999999987     567899999999998777765544333222110  0


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          .... .......... .......+.+++.+||+.||++||+++|+++
T Consensus       242 ----~~~~-~~~~~~~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  286 (326)
T 2x7f_A          242 ----ALFL-IPRNPAPRLK-SKKWSKKFQSFIESCLVKNHSQRPATEQLMK  286 (326)
T ss_dssp             ----HHHH-HHHSCCCCCS-CSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ----HHHH-hhcCccccCC-ccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence                0000 0000000000 0011122333777999999999999999986

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.97  E-value=6.3e-32  Score=296.72  Aligned_cols=240  Identities=21%  Similarity=0.167  Sum_probs=161.4

Q ss_pred             CCCCC-ceeecccCceeEEecccc----------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceE
Q 002376          661 GNFSH-ENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~-~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +.|.. .+.||+|+||.||+|+..                ...+.+.+|++++.++ +||||+++++++.+.     ...
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~-----~~~   86 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE-----DRF   86 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC-----CEE
Confidence            46666 378999999999998754                1256789999999985 799999999998543     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc---eEEeccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT---AKVGDFGLARF  791 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~---~ki~DfGla~~  791 (929)
                      ++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.   +||+|||+++.
T Consensus        87 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~  163 (316)
T 2ac3_A           87 YLVFEKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSG  163 (316)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-
T ss_pred             EEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCccc
Confidence            99999999999999986432        3467899999999998   9999999999999998775   99999999986


Q ss_pred             cccccCCC-CCccccceeccccccccccccCC-----CCCCCCCCCCCCcCCCCCcchhHHhhhcCCch---hh-hccC-
Q 002376          792 LLERVDNQ-SSISSTHVFMGSIGYVPPEYGLG-----ERPSTAGDVPTSESFAGEFNIVKWVESNLPEN---VL-QVLD-  860 (929)
Q Consensus       792 ~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~---~~-~~~~-  860 (929)
                      ........ .........+||+.|+|||++.+     ..++.++||||+|++++++.....++......   +. .... 
T Consensus       164 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  243 (316)
T 2ac3_A          164 IKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACP  243 (316)
T ss_dssp             ------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCH
T ss_pred             cccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccch
Confidence            53211100 01111233569999999999875     45899999999998877765544443222110   00 0000 


Q ss_pred             ---hHHHHhhc-ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 ---PELRQLMT-SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ---~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         ..+..... ............+...+++++.+|++.||++|||++|+++
T Consensus       244 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~  295 (316)
T 2ac3_A          244 ACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQ  295 (316)
T ss_dssp             HHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             hHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence               00111100 0000000000112223344778999999999999999986

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=1.2e-31  Score=296.11  Aligned_cols=238  Identities=20%  Similarity=0.232  Sum_probs=170.0

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||.||+|++.                      ...+++.+|+.++++++||||+++++++...+  
T Consensus        29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~--  106 (327)
T 2yfx_A           29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSL--  106 (327)
T ss_dssp             GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS--
T ss_pred             hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCC--
Confidence            468899999999999999998732                      12457889999999999999999999986533  


Q ss_pred             CcceEEEEEEecCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CC
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EM  779 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~  779 (929)
                         ..++||||+++|+|.+++...+               .++.|++.||+|||+.   +|+||||||+||+++.   +.
T Consensus       107 ---~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~  180 (327)
T 2yfx_A          107 ---PRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR  180 (327)
T ss_dssp             ---SCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred             ---CcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcc
Confidence               3699999999999999987432               2356899999999998   9999999999999984   44


Q ss_pred             ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhc
Q 002376          780 TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQV  858 (929)
Q Consensus       780 ~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~  858 (929)
                      .+||+|||+++.......    ........||+.|+|||++.+..++.++||||+|++++++.. ...++.....  .  
T Consensus       181 ~~kl~Dfg~~~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--~--  252 (327)
T 2yfx_A          181 VAKIGDFGMARDIYRASY----YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--Q--  252 (327)
T ss_dssp             CEEECCCHHHHHHHC----------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH--H--
T ss_pred             eEEECccccccccccccc----cccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH--H--
Confidence            699999999986532211    111223468999999999999999999999999977666543 2222211111  1  


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                         .+..........  .........+.+++.+||+.||++||+++|+++.|+.+.....
T Consensus       253 ---~~~~~~~~~~~~--~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~~  307 (327)
T 2yfx_A          253 ---EVLEFVTSGGRM--DPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDPD  307 (327)
T ss_dssp             ---HHHHHHHTTCCC--CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCHH
T ss_pred             ---HHHHHHhcCCCC--CCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCHH
Confidence               111111110000  0000111222337779999999999999999999999877543

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=7.7e-32  Score=302.08  Aligned_cols=184  Identities=27%  Similarity=0.342  Sum_probs=144.5

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccCc--------------------------HHHHHHHHHHHHccCCccccc
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTGS--------------------------WKSFIAECETLRNVRHRNLVK  706 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~--------------------------~~~~~~E~~~l~~l~Hpniv~  706 (929)
                      .+++....++|+..+.||+|+||.||+|.....                          .+.+.+|++++++++||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            567888899999999999999999999865410                          267899999999999999999


Q ss_pred             eeeecccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC
Q 002376          707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE  777 (929)
Q Consensus       707 l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~  777 (929)
                      +++++...+.......|+||||++ |+|.+++...+         .++.|++.||+|||+.   +|+||||||+||+++.
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~  169 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNILLAD  169 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECT
T ss_pred             eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEEEcC
Confidence            999987655445567899999997 68888776432         2367899999999998   9999999999999999


Q ss_pred             CCceEEeccccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          778 EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       778 ~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ++.+||+|||+++.....       .......||+.|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       170 ~~~~kl~Dfg~~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p  233 (362)
T 3pg1_A          170 NNDITICDFNLAREDTAD-------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKAL  233 (362)
T ss_dssp             TCCEEECCTTC----------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCCEEEEecCcccccccc-------cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCC
Confidence            999999999999854221       11234578999999999887 6789999999999887776554433

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.97  E-value=1.3e-31  Score=299.99  Aligned_cols=234  Identities=21%  Similarity=0.286  Sum_probs=169.6

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC-------------c-----------HHHHHHHHHHHHcc-CCcccccee
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG-------------S-----------WKSFIAECETLRNV-RHRNLVKLI  708 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------~-----------~~~~~~E~~~l~~l-~Hpniv~l~  708 (929)
                      +......++|+..+.||+|+||.||+|+...             .           .+.+.+|+.+++++ +||||++++
T Consensus        87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  166 (365)
T 2y7j_A           87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI  166 (365)
T ss_dssp             HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            3344556789999999999999999987641             0           34678999999999 799999999


Q ss_pred             eecccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc
Q 002376          709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT  780 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~  780 (929)
                      +++..     ....++||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+||++++++.
T Consensus       167 ~~~~~-----~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~  238 (365)
T 2y7j_A          167 DSYES-----SSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQ  238 (365)
T ss_dssp             EEEEB-----SSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCC
T ss_pred             EEEee-----CCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCC
Confidence            99854     345899999999999999886432        3467899999999998   9999999999999999999


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCC------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCch
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG------ERPSTAGDVPTSESFAGEFNIVKWVESNLPEN  854 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~  854 (929)
                      +||+|||+++.+...       .......||+.|+|||++.+      ..++.++||||+|+++|++.....++..... 
T Consensus       239 ikl~DfG~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~-  310 (365)
T 2y7j_A          239 IRLSDFGFSCHLEPG-------EKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQ-  310 (365)
T ss_dssp             EEECCCTTCEECCTT-------CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH-
T ss_pred             EEEEecCcccccCCC-------cccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCH-
Confidence            999999999876422       11234579999999999863      3588999999999877766554433322111 


Q ss_pred             hhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 VLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       .+... .+..   .........+......+.+++.+|++.||++|||++|+++
T Consensus       311 -~~~~~-~i~~---~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  359 (365)
T 2y7j_A          311 -ILMLR-MIME---GQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQ  359 (365)
T ss_dssp             -HHHHH-HHHH---TCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             -HHHHH-HHHh---CCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence             01000 0110   0000000011111222334777999999999999999985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.2e-32  Score=305.28  Aligned_cols=229  Identities=20%  Similarity=0.245  Sum_probs=166.9

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLD  715 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~  715 (929)
                      .++|+..+.||+|+||.||+++..                       ...+.+.+|+++++++ +||||+++++++... 
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~-  131 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE-  131 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-
Confidence            468999999999999999988652                       1234577899999999 699999999998543 


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                          ...++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||
T Consensus       132 ----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG  204 (355)
T 1vzo_A          132 ----TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFG  204 (355)
T ss_dssp             ----TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSS
T ss_pred             ----ceEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCC
Confidence                34899999999999999986432        2356899999999998   99999999999999999999999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCC--CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccChHH
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE--RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLDPEL  863 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  863 (929)
                      +++......     .......+||+.|+|||++.+.  .++.++||||+|++++++.....++.....  ...++.    
T Consensus       205 ~a~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~----  275 (355)
T 1vzo_A          205 LSKEFVADE-----TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEIS----  275 (355)
T ss_dssp             EEEECCGGG-----GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHH----
T ss_pred             CCeecccCC-----CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHH----
Confidence            998653221     1122345799999999999863  478999999999887776554444322111  111111    


Q ss_pred             HHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHHH
Q 002376          864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALRR  909 (929)
Q Consensus       864 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~~  909 (929)
                      ...........    ..+...+++++.+||+.||++||     +++|+++.
T Consensus       276 ~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h  322 (355)
T 1vzo_A          276 RRILKSEPPYP----QEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH  322 (355)
T ss_dssp             HHHHHCCCCCC----TTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred             HHHhccCCCCC----cccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence            11111111111    11223334477799999999999     89998764

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=4.7e-32  Score=300.46  Aligned_cols=244  Identities=17%  Similarity=0.175  Sum_probs=159.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccC-CccccceeeecccCCC---CC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVR-HRNLVKLITSCSSLDS---KN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~---~~  718 (929)
                      ...+|+..+.||+|+||.||+|++..                ..+.+.+|+.+++++. ||||+++++++.....   ..
T Consensus        26 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           26 GELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             cCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            34578899999999999999998641                2457889999999996 9999999999853221   23


Q ss_pred             cceEEEEEEecCCCCcccccccc-----------ccccccHHHHHHHhhhCCCCC--EEecCCCCCCeeecCCCceEEec
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE-----------RKNELDITSALDYLHNDCEVP--VVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~-----------~~~~~~ia~aL~yLH~~~~~~--iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                      ....++||||++ |+|.+++...           ..++.|++.||+|||+.   +  |+||||||+||+++.++.+||+|
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~D  181 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCD  181 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCC
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEec
Confidence            456899999995 7998887531           13367899999999997   6  99999999999999999999999


Q ss_pred             cccccccccccCCCC------Cccccceecccccccccccc---CCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhh
Q 002376          786 FGLARFLLERVDNQS------SISSTHVFMGSIGYVPPEYG---LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVL  856 (929)
Q Consensus       786 fGla~~~~~~~~~~~------~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~  856 (929)
                      ||+++..........      .........||+.|+|||++   .+..++.++||||+|++++++.....++....  ..
T Consensus       182 fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~--~~  259 (337)
T 3ll6_A          182 FGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGA--KL  259 (337)
T ss_dssp             CTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC--------
T ss_pred             CccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchh--HH
Confidence            999987643211100      00111244699999999998   56678999999999977766544333322111  11


Q ss_pred             hccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          857 QVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       857 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      ++.....    ....  .......    +.+++.+||+.||++|||++|+++.|+++.+...
T Consensus       260 ~~~~~~~----~~~~--~~~~~~~----~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~~  311 (337)
T 3ll6_A          260 RIVNGKY----SIPP--HDTQYTV----FHSLIRAMLQVNPEERLSIAEVVHQLQEIAAARN  311 (337)
T ss_dssp             ------C----CCCT--TCCSSGG----GHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             HhhcCcc----cCCc--ccccchH----HHHHHHHHccCChhhCcCHHHHHHHHHHHHhccC
Confidence            1111100    0000  0011111    2236779999999999999999999999987644

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.96  E-value=2.7e-32  Score=300.74  Aligned_cols=172  Identities=26%  Similarity=0.352  Sum_probs=134.5

Q ss_pred             CCCCCceeecccCceeEEeccccCc-----------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-----------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-----------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|...+.||+|+||.||+|+....                 ...+.+|++++++++||||+++++++...     ...+
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~~   76 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTE-----KSLT   76 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECS-----SCEE
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeC-----CEEE
Confidence            5788999999999999999976511                 11345799999999999999999998643     3489


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||++ |+|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus        77 lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~  152 (324)
T 3mtl_A           77 LVFEYLD-KDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSI  152 (324)
T ss_dssp             EEEECCS-EEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC--
T ss_pred             EEecccc-cCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccC
Confidence            9999997 68888876432         2367899999999998   999999999999999999999999999985432


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      .      ........||+.|+|||++.+ ..++.++||||+|++++++.....+
T Consensus       153 ~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p  200 (324)
T 3mtl_A          153 P------TKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPL  200 (324)
T ss_dssp             ----------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             C------ccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence            1      112233478999999999877 5689999999999887776554433

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.96  E-value=5.1e-32  Score=305.98  Aligned_cols=227  Identities=23%  Similarity=0.316  Sum_probs=160.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC--CccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR--HRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~--Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      +.|+..+.||+|+||.||++....                 ..+.+.+|++++++++  |||||++++++...     ..
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~-----~~  130 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-----QY  130 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----SE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC-----CE
Confidence            358999999999999999986541                 2357889999999996  59999999998643     34


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+||| +.+|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++ ++.+||+|||+++.+.
T Consensus       131 ~~lv~E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~  205 (390)
T 2zmd_A          131 IYMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ  205 (390)
T ss_dssp             EEEEEE-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC-
T ss_pred             EEEEEe-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCcccccc
Confidence            899999 56889999986432        3367899999999998   999999999999996 5799999999998764


Q ss_pred             cccCCCCCccccceeccccccccccccCC-----------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChH
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-----------ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPE  862 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  862 (929)
                      ....    .......+||+.|||||++.+           ..++.++||||+|+++|++.....++........     .
T Consensus       206 ~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~-----~  276 (390)
T 2zmd_A          206 PDTT----SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQIS-----K  276 (390)
T ss_dssp             ------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHH-----H
T ss_pred             CCCc----cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHH-----H
Confidence            2211    111234579999999999875           4689999999999887776554444332221110     1


Q ss_pred             HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          863 LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       863 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +.........  ...+......+.+++.+||+.||++|||++|+++
T Consensus       277 ~~~~~~~~~~--~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~  320 (390)
T 2zmd_A          277 LHAIIDPNHE--IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  320 (390)
T ss_dssp             HHHHHCTTSC--CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHhCcccc--CCCCccchHHHHHHHHHHcccChhhCCCHHHHhh
Confidence            1111110000  0000011122333777999999999999999975

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.96  E-value=6.8e-32  Score=293.30  Aligned_cols=227  Identities=21%  Similarity=0.296  Sum_probs=162.9

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|....+||+|+||.||+|++.                ...+.+.+|+.+++.++||||+++++++...     ...++
T Consensus        22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~l   96 (295)
T 2clq_A           22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN-----GFIKI   96 (295)
T ss_dssp             CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC-----CcEEE
Confidence            34555679999999999998754                1246788999999999999999999998543     35899


Q ss_pred             EEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEecccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDFGLARFL  792 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~DfGla~~~  792 (929)
                      ||||+++|+|.+++....           .++.|++.||+|||+.   +|+||||||+||+++. ++.+||+|||+++..
T Consensus        97 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~  173 (295)
T 2clq_A           97 FMEQVPGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRL  173 (295)
T ss_dssp             EEECCSEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEES
T ss_pred             EEEeCCCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccccc
Confidence            999999999999886431           1356899999999998   9999999999999987 899999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      ...      ........||+.|+|||++.+..  ++.++||||+|++++++.....++................   ...
T Consensus       174 ~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~---~~~  244 (295)
T 2clq_A          174 AGI------NPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF---KVH  244 (295)
T ss_dssp             CC-----------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH---CCC
T ss_pred             CCC------CCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc---ccc
Confidence            321      11123357899999999987654  8999999999987777655444333222111000000000   000


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    ..+...+.+++.+||+.||++||+++|+++
T Consensus       245 ~~~~----~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  278 (295)
T 2clq_A          245 PEIP----ESMSAEAKAFILKCFEPDPDKRACANDLLV  278 (295)
T ss_dssp             CCCC----TTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred             cccc----ccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            1111    111222333777999999999999999975

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.96  E-value=1.8e-31  Score=308.04  Aligned_cols=246  Identities=17%  Similarity=0.171  Sum_probs=174.7

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..++||+|+||.||+|++.              ...+++.+|+++++.++|++.+..+.++..    .....++|
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~il~~L~~~~~i~~i~~~~~----~~~~~~lv   81 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKIYRILQGGTGIPNVRWFGV----EGDYNVLV   81 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSSCCHHHHHHHHHHTTTSTTCCCEEEEEE----ETTEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccccHHHHHHHHHHHHhcCCCCCCeEEEEEe----eCCEEEEE
Confidence            468999999999999999999754              123468899999999988665555544432    23357999


Q ss_pred             EEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEeccccccccc
Q 002376          726 YEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla~~~~  793 (929)
                      |||+ +|+|.+++...         ..++.||+.||+|||+.   +||||||||+|||+   +.++.+||+|||+++.+.
T Consensus        82 me~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~  157 (483)
T 3sv0_A           82 MDLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR  157 (483)
T ss_dssp             EECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred             EECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence            9999 99999998632         23467999999999998   99999999999999   688999999999998764


Q ss_pred             cccCCCC-CccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccc
Q 002376          794 ERVDNQS-SISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       794 ~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  871 (929)
                      ....... .........||+.|+|||++.+..++.++||||+|+++|++.....++..... ...+.+............
T Consensus       158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~  237 (483)
T 3sv0_A          158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSI  237 (483)
T ss_dssp             CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCH
T ss_pred             CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccH
Confidence            3221110 11122356899999999999999999999999999888776665555543322 111111111111000000


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                         ......+..-+.+++.+||+.||++||+++++++.|+++...
T Consensus       238 ---~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~  279 (483)
T 3sv0_A          238 ---EALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR  279 (483)
T ss_dssp             ---HHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred             ---HHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence               000001112223377799999999999999999999998664

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.96  E-value=5.6e-32  Score=298.85  Aligned_cols=175  Identities=26%  Similarity=0.394  Sum_probs=133.7

Q ss_pred             HhhCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ...++|+..+.||+|+||.||+|++..                  ..+.+.+|++++++++||||+++++++...     
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----  105 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN-----  105 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET-----
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC-----
Confidence            445689999999999999999986541                  134577999999999999999999998543     


Q ss_pred             ceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee-----cCCCceEEecc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL-----DEEMTAKVGDF  786 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl-----~~~~~~ki~Df  786 (929)
                      ...++||||++ |+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+     ++++.+||+||
T Consensus       106 ~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Df  181 (329)
T 3gbz_A          106 HRLHLIFEYAE-NDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDF  181 (329)
T ss_dssp             TEEEEEEECCS-EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCT
T ss_pred             CEEEEEEecCC-CCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcC
Confidence            35899999997 59998886432        3467999999999998   99999999999999     45556999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      |+++.....      ........||+.|+|||++.+.. ++.++||||+|++++++.....+
T Consensus       182 g~a~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~p  237 (329)
T 3gbz_A          182 GLARAFGIP------IRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPL  237 (329)
T ss_dssp             THHHHHC-----------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             CCccccCCc------ccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence            999875321      11223457899999999998754 89999999999887776554433

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.96  E-value=3.5e-32  Score=296.67  Aligned_cols=228  Identities=20%  Similarity=0.279  Sum_probs=164.2

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||.||+|+..                ...+.+.+|++++++++||||+++++++...     ...+
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   92 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHD-----GKLW   92 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC------CEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC-----CeEE
Confidence            467899999999999999998765                2346789999999999999999999998653     3489


Q ss_pred             EEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      +||||+++|+|.+++...         ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++.....
T Consensus        93 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~  169 (302)
T 2j7t_A           93 IMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLK  169 (302)
T ss_dssp             EEEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccc
Confidence            999999999999887532         13367899999999998   999999999999999999999999999864321


Q ss_pred             ccCCCCCccccceecccccccccccc-----CCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYG-----LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ..      .......||+.|+|||++     .+..++.++||||+|++++++.....++.....  .+.    .......
T Consensus       170 ~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~----~~~~~~~  237 (302)
T 2j7t_A          170 TL------QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNP--MRV----LLKIAKS  237 (302)
T ss_dssp             HH------HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHH----HHHHHHS
T ss_pred             cc------cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCH--HHH----HHHHhcc
Confidence            11      112234789999999998     467789999999999877765444333322211  010    0110000


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .... .......+..+.+++.+||+.||++|||++|+++
T Consensus       238 ~~~~-~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  275 (302)
T 2j7t_A          238 DPPT-LLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE  275 (302)
T ss_dssp             CCCC-CSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred             CCcc-cCCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            0000 0001111222333777999999999999999975

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=2.4e-31  Score=319.26  Aligned_cols=236  Identities=22%  Similarity=0.270  Sum_probs=171.8

Q ss_pred             hhCCCCCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..++|+..+.||+|+||.||+|.+..                    ..+.|.+|+.++++++|||||++++++.+.    
T Consensus       388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~----  463 (656)
T 2j0j_A          388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITEN----  463 (656)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecC----
Confidence            34678889999999999999986531                    136789999999999999999999998431    


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                        ..++||||+++|+|.++++...         .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||++
T Consensus       464 --~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a  538 (656)
T 2j0j_A          464 --PVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLS  538 (656)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCC
T ss_pred             --ceEEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCC
Confidence              2699999999999999987432         2367899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +......     ........||+.|||||++.+..++.++||||+|++++++.+ ...++.....  .+.+. .+..   
T Consensus       539 ~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~--~~~~~-~i~~---  607 (656)
T 2j0j_A          539 RYMEDST-----YYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIG-RIEN---  607 (656)
T ss_dssp             CSCCC---------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHHH-HHHH---
T ss_pred             eecCCCc-----ceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCH--HHHHH-HHHc---
Confidence            8753221     111223467889999999998999999999999987776543 2222221111  11110 1111   


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                       ..  +...+...+..+.+++.+||+.||++|||++|+++.|+++.+..
T Consensus       608 -~~--~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~~  653 (656)
T 2j0j_A          608 -GE--RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE  653 (656)
T ss_dssp             -TC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             -CC--CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence             00  00001111222334777999999999999999999999987653

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.96  E-value=4.9e-31  Score=307.86  Aligned_cols=235  Identities=22%  Similarity=0.224  Sum_probs=167.1

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .+.|+..+.||+|+||.||+|+..                  ...+.+.+|+.+++.++|||||+++++|..     ...
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~  110 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-----KRN  110 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CCE
Confidence            346888999999999999998764                  124578899999999999999999999954     335


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~  790 (929)
                      .|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.   ++.+||+|||+|+
T Consensus       111 ~~lv~e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~  187 (494)
T 3lij_A          111 YYLVMECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSA  187 (494)
T ss_dssp             EEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCE
T ss_pred             EEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCe
Confidence            899999999999988875332        3467999999999998   9999999999999976   4569999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....       ......+||+.|+|||++. +.++.++||||+|+++|++.....++.....  .+++...........
T Consensus       188 ~~~~~-------~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~~~  257 (494)
T 3lij_A          188 VFENQ-------KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD--QEILRKVEKGKYTFD  257 (494)
T ss_dssp             ECBTT-------BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCCCC
T ss_pred             ECCCC-------ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCCCC
Confidence            76321       1223457999999999986 5699999999999877765544433322211  111111111111101


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQEI  916 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~~~  916 (929)
                      .    ..+..++..+++++.+||+.||++|||+.|+++  .+++....
T Consensus       258 ~----~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~~~~~  301 (494)
T 3lij_A          258 S----PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKEMCSK  301 (494)
T ss_dssp             S----GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHHHHHH
T ss_pred             c----hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCcccccCccc
Confidence            1    111112223334777999999999999999984  35554433

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.96  E-value=1.1e-31  Score=293.05  Aligned_cols=227  Identities=24%  Similarity=0.268  Sum_probs=166.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|...+.||+|+||.||+++...                ..+.+.+|+.++++++||||+++++++...     ...+
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~   82 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYEST-----THYY   82 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECS-----SEEE
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccC-----CEEE
Confidence            3578889999999999999987541                235688999999999999999999998543     3589


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla~~~  792 (929)
                      +||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++   ++++.+||+|||+++..
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~  159 (304)
T 2jam_A           83 LVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKME  159 (304)
T ss_dssp             EEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCC
T ss_pred             EEEEcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceec
Confidence            9999999999999886332        2367899999999998   99999999999999   78899999999998754


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..        .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+... .+.....   .
T Consensus       160 ~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~-~i~~~~~---~  225 (304)
T 2jam_A          160 QN--------GIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE--SKLFE-KIKEGYY---E  225 (304)
T ss_dssp             CC--------BTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHH-HHHHCCC---C
T ss_pred             CC--------CccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH--HHHHH-HHHcCCC---C
Confidence            21        112334799999999999999999999999999877765544433322111  11111 1111000   0


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........++..+.+++.+|++.||++|||++|+++
T Consensus       226 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~  261 (304)
T 2jam_A          226 FESPFWDDISESAKDFICHLLEKDPNERYTCEKALS  261 (304)
T ss_dssp             CCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred             CCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence            000011112222334777999999999999999985

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.96  E-value=7.6e-31  Score=282.05  Aligned_cols=230  Identities=20%  Similarity=0.220  Sum_probs=168.1

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|...                 ...+.+.+|+.+++.++||||+++++++...     ...
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~   80 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-----NIQ   80 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC-----CEE
Confidence            357888999999999999998654                 1246788999999999999999999998543     347


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||.++....
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  157 (276)
T 2yex_A           81 YLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY  157 (276)
T ss_dssp             EEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             EEEEEecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCC
Confidence            99999999999999987432        3367899999999998   999999999999999999999999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...    ........||+.|+|||++.+..+ +.++||||+|++++++.....++......     ............. 
T Consensus       158 ~~~----~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~~~~~~~~-  227 (276)
T 2yex_A          158 NNR----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS-----CQEYSDWKEKKTY-  227 (276)
T ss_dssp             TTE----ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTT-----SHHHHHHHTTCTT-
T ss_pred             Ccc----hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchH-----HHHHHHhhhcccc-
Confidence            211    111234578999999999988775 78999999998777655444333222110     1111111110000 


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      . .....+...+.+++.+|++.||++|||++|+++
T Consensus       228 ~-~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  261 (276)
T 2yex_A          228 L-NPWKKIDSAPLALLHKILVENPSARITIPDIKK  261 (276)
T ss_dssp             S-TTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             c-CchhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence            0 000111222334777999999999999999875

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.96  E-value=6e-31  Score=306.59  Aligned_cols=227  Identities=23%  Similarity=0.276  Sum_probs=166.4

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|+..                  ...+.+.+|++++++++|||||++++++..     ...
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~   95 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SSS   95 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-----CCE
Confidence            357889999999999999998764                  234578899999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec---CCCceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~---~~~~~ki~DfGla~  790 (929)
                      .|+||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++   .++.+||+|||+|+
T Consensus        96 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~  172 (486)
T 3mwu_A           96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (486)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTT
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCe
Confidence            899999999999998875332        3467899999999998   999999999999995   45689999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....       ......+||+.|+|||++.+ .++.++||||+|+++|++.....++.....  .+++.........  
T Consensus       173 ~~~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~~--  240 (486)
T 3mwu_A          173 CFQQN-------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILKRVETGKYA--  240 (486)
T ss_dssp             TBCCC-----------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHTCCC--
T ss_pred             ECCCC-------CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhCCCC--
Confidence            65321       11234579999999999876 599999999999877765554433322211  1111111111111  


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ...+.+..++.-+++++.+||+.||++|||+.|+++
T Consensus       241 --~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~  276 (486)
T 3mwu_A          241 --FDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (486)
T ss_dssp             --SCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             --CCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence              111111122223334777999999999999999986

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.96  E-value=1.4e-31  Score=297.91  Aligned_cols=173  Identities=24%  Similarity=0.381  Sum_probs=136.3

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccCc---------------------HHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTGS---------------------WKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~---------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      ....++|+..+.||+|+||.||+|++..+                     .+.+.+|++++++++||||+++++++... 
T Consensus         6 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-   84 (346)
T 1ua2_A            6 KSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK-   84 (346)
T ss_dssp             -------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT-
T ss_pred             HHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC-
Confidence            34457899999999999999999876511                     13678999999999999999999998543 


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                          ...++||||+++ +|.+++....         .++.|++.||+|||+.   +|+||||||+||+++.++.+||+||
T Consensus        85 ----~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Df  156 (346)
T 1ua2_A           85 ----SNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADF  156 (346)
T ss_dssp             ----TCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC
T ss_pred             ----CceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEec
Confidence                347999999975 8888776432         2367899999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~  844 (929)
                      |+++.....      ........||+.|+|||++.+. .++.++||||+|++++++...
T Consensus       157 g~a~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g  209 (346)
T 1ua2_A          157 GLAKSFGSP------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR  209 (346)
T ss_dssp             GGGSTTTSC------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ccceeccCC------cccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHC
Confidence            999865321      1122345789999999998765 489999999999887776543

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.96  E-value=5.7e-32  Score=306.18  Aligned_cols=238  Identities=22%  Similarity=0.261  Sum_probs=163.3

Q ss_pred             CCCCCceeecccCceeEEeccccCc-----------HHHHHHHHHHHHccCCccccceeeecccCCC-CCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-----------WKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-----------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~~lV~e~  728 (929)
                      .+|+..+.||+|+||+||+|+....           .+...+|+++++.++|||||++++++..... ....+.++||||
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~  119 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNLVLEY  119 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEEEEEC
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcchHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEEEeec
Confidence            4688899999999999999987521           2234479999999999999999999876543 334557899999


Q ss_pred             cCCCCcccccc-----------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEecccccccccccc
Q 002376          729 LSNGSLGDWIH-----------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~-----------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~~~~~  796 (929)
                      ++++.+....+           ..+.++.|+++||+|||+.   +|+||||||+|||++ .++.+||+|||+|+......
T Consensus       120 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~  196 (394)
T 4e7w_A          120 VPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGE  196 (394)
T ss_dssp             CSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTC
T ss_pred             cCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCC
Confidence            98653332221           1123467999999999998   999999999999999 79999999999998753221


Q ss_pred             CCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC------h-HHHHh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD------P-ELRQL  866 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~------~-~l~~~  866 (929)
                             ......||+.|+|||++.+. .++.++||||+|++++++..+..++.....  ...+++.      . .+...
T Consensus       197 -------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~  269 (394)
T 4e7w_A          197 -------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTM  269 (394)
T ss_dssp             -------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             -------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence                   12235789999999998775 489999999999888776655444332221  0111100      0 00000


Q ss_pred             hc--------ccc--hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MT--------SNE--SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~--------~~~--~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..        ...  .............+.+++.+||+.||++|||+.|+++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (394)
T 4e7w_A          270 NPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC  321 (394)
T ss_dssp             CGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence            00        000  0000000001122334778999999999999999986

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.96  E-value=1.3e-31  Score=298.84  Aligned_cols=181  Identities=24%  Similarity=0.364  Sum_probs=141.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC---CC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS---KN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~---~~  718 (929)
                      .++|+..+.||+|+||.||+|+...                  ....+.+|++++++++||||+++++++.....   ..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            3578999999999999999987641                  23478899999999999999999999876432   11


Q ss_pred             cceEEEEEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ....++||||+++ ++.+.+...         ..++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|
T Consensus        96 ~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a  171 (351)
T 3mi9_A           96 KGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLA  171 (351)
T ss_dssp             -CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTC
T ss_pred             CceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccchhc
Confidence            3458999999974 676665432         23467899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      +.+......  .........||+.|+|||++.+. .++.++||||+|++++++.....
T Consensus       172 ~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~  227 (351)
T 3mi9_A          172 RAFSLAKNS--QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSP  227 (351)
T ss_dssp             EECCCCSSS--SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ccccccccc--cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCC
Confidence            876432111  11223345789999999998764 58999999999988777655433

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.96  E-value=1.2e-32  Score=300.38  Aligned_cols=240  Identities=25%  Similarity=0.290  Sum_probs=154.6

Q ss_pred             HhhCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ...++|+..+.||+|+||.||+|...                 ...+++.+|++++++++||||+++++++...+     
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-----   86 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKD-----   86 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSS-----
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecC-----
Confidence            34578999999999999999998763                 12356789999999999999999999986543     


Q ss_pred             eEEEEEEecCCCCcccccccc----------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          721 FLALVYEFLSNGSLGDWIHGE----------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~----------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      ..++||||+++|+|.+++...                ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~  163 (303)
T 2vwi_A           87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIA  163 (303)
T ss_dssp             CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred             CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEE
Confidence            389999999999999988621                12357899999999998   99999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPEL  863 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l  863 (929)
                      |||+++........ ..........||+.|+|||++.+ ..++.++||||+|++++++.....++...+..  +......
T Consensus       164 dfg~~~~~~~~~~~-~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~  240 (303)
T 2vwi_A          164 DFGVSAFLATGGDI-TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPM--KVLMLTL  240 (303)
T ss_dssp             CCHHHHHCC----------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGG--GHHHHHH
T ss_pred             eccchheeccCCCc-cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchh--hHHHHHh
Confidence            99999865432111 11112234579999999999876 56899999999998877766555444333221  0000000


Q ss_pred             HHhhcccch--hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          864 RQLMTSNES--QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       864 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .........  ............+.+++.+||+.||++||+++|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~  287 (303)
T 2vwi_A          241 QNDPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLR  287 (303)
T ss_dssp             TSSCCCTTC-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             ccCCCccccccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence            000000000  000000001122333777999999999999999986

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.96  E-value=1.2e-31  Score=288.85  Aligned_cols=230  Identities=23%  Similarity=0.303  Sum_probs=167.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+++...                  ..+.+.+|++++++++||||+++++++...   ....
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~~   81 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TNTT   81 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG---GGTE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCce
Confidence            4578899999999999999987641                  235688999999999999999999987542   2345


Q ss_pred             EEEEEEecCCCCccccccccc------------cccccHHHHHHHhhhCCCCC-----EEecCCCCCCeeecCCCceEEe
Q 002376          722 LALVYEFLSNGSLGDWIHGER------------KNELDITSALDYLHNDCEVP-----VVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~------------~~~~~ia~aL~yLH~~~~~~-----iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      .++||||+++|+|.+++....            .++.|++.||+|||+.   +     |+||||||+||+++.++.+||+
T Consensus        82 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~  158 (279)
T 2w5a_A           82 LYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLG  158 (279)
T ss_dssp             EEEEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEEC
T ss_pred             EEEEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEe
Confidence            899999999999999986321            2367899999999998   6     9999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      |||+++.....      ........||+.|+|||++.+..++.++||||+|++++++.....++.....  .++. ..+.
T Consensus       159 dfg~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~-~~i~  229 (279)
T 2w5a_A          159 DFGLARILNHD------TSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELA-GKIR  229 (279)
T ss_dssp             CCCHHHHC---------CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHH-HHHH
T ss_pred             cCchheeeccc------cccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH--HHHH-HHHh
Confidence            99999865321      1112335789999999999999999999999999877766544333322211  1111 1111


Q ss_pred             HhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHH
Q 002376          865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL  910 (929)
Q Consensus       865 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L  910 (929)
                      ....  .......++    .+.+++.+||+.||++||+++|+++.+
T Consensus       230 ~~~~--~~~~~~~~~----~l~~li~~~l~~~p~~Rps~~~ll~~~  269 (279)
T 2w5a_A          230 EGKF--RRIPYRYSD----ELNEIITRMLNLKDYHRPSVEEILENP  269 (279)
T ss_dssp             HTCC--CCCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred             hccc--ccCCcccCH----HHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence            1000  000111112    233377799999999999999998754

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.96  E-value=4.8e-31  Score=287.84  Aligned_cols=226  Identities=23%  Similarity=0.272  Sum_probs=168.9

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .+.|+..+.||+|+||.||+|...                 ...+.+.+|+.++++++||||+++++++...     ...
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~   95 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-----TKL   95 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----CeE
Confidence            356888999999999999998653                 1246789999999999999999999998643     348


Q ss_pred             EEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||+++++|.+++....       .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        96 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~  172 (303)
T 3a7i_A           96 WIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT  172 (303)
T ss_dssp             EEEEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred             EEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence            99999999999999886432       3467899999999998   9999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .      .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.. ..+.....  .....
T Consensus       173 ~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~--~~~~-~~~~~~~~--~~~~~  241 (303)
T 3a7i_A          173 Q------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHP--MKVL-FLIPKNNP--PTLEG  241 (303)
T ss_dssp             B------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHH-HHHHHSCC--CCCCS
T ss_pred             c------cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCH--HHHH-HHhhcCCC--CCCcc
Confidence            1      112345789999999999999999999999999877765544333322211  0000 00111000  00001


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    ....+.+++.+||+.||++|||++|+++
T Consensus       242 ~----~~~~l~~li~~~l~~dp~~Rps~~~ll~  270 (303)
T 3a7i_A          242 N----YSKPLKEFVEACLNKEPSFRPTAKELLK  270 (303)
T ss_dssp             S----CCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             c----cCHHHHHHHHHHcCCChhhCcCHHHHhh
Confidence            1    1122333777999999999999999975

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.96  E-value=8.3e-32  Score=301.50  Aligned_cols=236  Identities=20%  Similarity=0.271  Sum_probs=152.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||.||+|....                  ..+.+.+|+++++.++||||+++++++..... ....
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            4689999999999999999996531                  23577899999999999999999999865321 1224


Q ss_pred             eEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      ..|+||||+ +++|.++++..+       .++.|+++||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus       108 ~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~  183 (367)
T 2fst_X          108 DVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTA  183 (367)
T ss_dssp             CCEEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC--------
T ss_pred             eEEEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccccccc
Confidence            479999999 789999886432       3467999999999998   99999999999999999999999999998643


Q ss_pred             cccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhh-------------
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQ-------------  857 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~-------------  857 (929)
                      .         .....+||+.|+|||++.+ ..++.++||||+|++++++..+..++.....  .+..             
T Consensus       184 ~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~  254 (367)
T 2fst_X          184 D---------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELL  254 (367)
T ss_dssp             ----------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHH
T ss_pred             c---------cCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHH
Confidence            1         1234579999999999887 6789999999999888776655444322211  0000             


Q ss_pred             --ccChHHHHhhcccch-hhhhhh---HHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 --VLDPELRQLMTSNES-QTIQLH---DCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 --~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        +.............. ......   ......+.+++.+|++.||++|||++|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~  311 (367)
T 2fst_X          255 KKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA  311 (367)
T ss_dssp             TTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             HHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence              001111110000000 000000   001122334888999999999999999985

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=8e-30  Score=278.60  Aligned_cols=255  Identities=24%  Similarity=0.280  Sum_probs=181.6

Q ss_pred             CCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCC-
Q 002376           56 SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE-  134 (929)
Q Consensus        56 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-  134 (929)
                      ...|.|.+|.|+..+            ++ .+|..+.  ++|++|+|++|+++...+..|.++++|++|+|++|+++.. 
T Consensus         4 ~C~C~~~~l~c~~~~------------l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~   68 (306)
T 2z66_A            4 RCSCSGTEIRCNSKG------------LT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG   68 (306)
T ss_dssp             TCEEETTEEECCSSC------------CS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE
T ss_pred             CCeeCCCEEEcCCCC------------cc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc
Confidence            445899999887532            33 4555443  6899999999999855555689999999999999999843 


Q ss_pred             -cccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCC
Q 002376          135 -LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA  213 (929)
Q Consensus       135 -~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~  213 (929)
                       .|..+..+++|++|+|++|.++ .++.. +..+++|++|++++|++.+..+       ...|..+++|++|+|++|++.
T Consensus        69 ~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~L~l~~n~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~  139 (306)
T 2z66_A           69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSE-------FSVFLSLRNLIYLDISHTHTR  139 (306)
T ss_dssp             EEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCCEEECTTSEEESSTT-------TTTTTTCTTCCEEECTTSCCE
T ss_pred             CcccccccccccCEEECCCCccc-cChhh-cCCCCCCCEEECCCCccccccc-------chhhhhccCCCEEECCCCcCC
Confidence             3677778999999999999998 56665 8889999999999998754322       145778889999999999998


Q ss_pred             CccCCccccCCCCceEEeeecCCCC-cCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCC
Q 002376          214 GTVPSTIYNMTSLVHLRLASNQLGG-EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG  292 (929)
Q Consensus       214 ~~~p~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  292 (929)
                      +..+..|.++++|++|+|++|.+++ .+|..+. .+++|+.|++++|++++..|..+..+++|+.|+|++|.+++..+..
T Consensus       140 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  218 (306)
T 2z66_A          140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP  218 (306)
T ss_dssp             ECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGG
T ss_pred             ccchhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhh
Confidence            8888888889999999999888875 2443333 3666666666666666666666666666666666666666555545


Q ss_pred             CCCCCccceeccccccccCCCCCCCCccccccCCC-CCCCEEEccCCcccc
Q 002376          293 LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS-THLNYLALDGNQFEG  342 (929)
Q Consensus       293 ~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~  342 (929)
                      |..+++|+.|++++|++.....       ..+..+ ++|++|+|++|.+++
T Consensus       219 ~~~l~~L~~L~L~~N~l~~~~~-------~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          219 YKCLNSLQVLDYSLNHIMTSKK-------QELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             GTTCTTCCEEECTTSCCCBCSS-------SSCCCCCTTCCEEECTTCCEEC
T ss_pred             ccCcccCCEeECCCCCCcccCH-------HHHHhhhccCCEEEccCCCeec
Confidence            5555555555555555544322       223333 255555555555553

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.96  E-value=9.4e-32  Score=306.01  Aligned_cols=176  Identities=26%  Similarity=0.345  Sum_probs=128.0

Q ss_pred             CCC-ceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          663 FSH-ENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       663 ~~~-~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      |.. .++||+|+||.||+|++.                ...+.+.+|++++++++|||||++++++...   .....++|
T Consensus        22 y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~---~~~~~~lv   98 (405)
T 3rgf_A           22 FEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFLSH---ADRKVWLL   98 (405)
T ss_dssp             EECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSSCCHHHHHHHHHHHHCCCTTBCCCCEEEEET---TTTEEEEE
T ss_pred             hhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCCCHHHHHHHHHHHhcCCCCeeeEeeEEecC---CCCeEEEE
Confidence            444 468999999999999843                1235788999999999999999999998642   23458999


Q ss_pred             EEecCCCCccccccc-----------------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeee----cCCCceEEe
Q 002376          726 YEFLSNGSLGDWIHG-----------------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILL----DEEMTAKVG  784 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~-----------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl----~~~~~~ki~  784 (929)
                      |||++ |+|.+++..                 .+.++.|++.||+|||+.   +|+||||||+|||+    +.++.+||+
T Consensus        99 ~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~  174 (405)
T 3rgf_A           99 FDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKIA  174 (405)
T ss_dssp             EECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEEC
T ss_pred             EeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEEE
Confidence            99996 588777642                 123467999999999998   99999999999999    778899999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      |||+|+.......   ........+||+.|+|||++.+. .++.++||||+|++++++.....++
T Consensus       175 Dfg~a~~~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf  236 (405)
T 3rgf_A          175 DMGFARLFNSPLK---PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIF  236 (405)
T ss_dssp             CTTCCC-------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             ECCCceecCCCCc---ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCC
Confidence            9999987642211   11123346899999999999875 4899999999998888876655444

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.96  E-value=5.4e-32  Score=308.94  Aligned_cols=237  Identities=21%  Similarity=0.278  Sum_probs=162.8

Q ss_pred             CCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcceEEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFLALVYE  727 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~~lV~e  727 (929)
                      .+|+..+.||+|+||+||+|++..            ..+.+.+|++++++++|||||+++++|..... ....+.++|||
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~lv~e  133 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLD  133 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTTSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEeehh
Confidence            468889999999999999998752            12334579999999999999999999865432 23345789999


Q ss_pred             ecCCCCccccccc------------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-CceEEecccccccccc
Q 002376          728 FLSNGSLGDWIHG------------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLE  794 (929)
Q Consensus       728 ~~~~gsL~~~l~~------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-~~~ki~DfGla~~~~~  794 (929)
                      |+++ ++.+.+..            .+.++.||++||+|||+.   +|+||||||+|||++.+ +.+||+|||+|+.+..
T Consensus       134 ~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          134 YVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             CCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             cccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence            9975 56555431            123467999999999998   99999999999999965 5789999999986532


Q ss_pred             ccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC-------hHHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD-------PELR  864 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~l~  864 (929)
                      .       ......+||+.|+|||++.+. .++.++||||+|+++|++..+..++.....  .+.+++.       ..+.
T Consensus       210 ~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~  282 (420)
T 1j1b_A          210 G-------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIR  282 (420)
T ss_dssp             T-------CCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred             C-------CCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence            1       112235789999999998775 699999999999888777655444332211  1111110       0000


Q ss_pred             Hhhcccc----------hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNE----------SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~----------~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......          .........+...+.+++.+||+.||++|||+.|+++
T Consensus       283 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~  336 (420)
T 1j1b_A          283 EMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA  336 (420)
T ss_dssp             HHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             hhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence            0000000          0000000011122334788999999999999999985

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.96  E-value=3.4e-31  Score=284.87  Aligned_cols=224  Identities=26%  Similarity=0.322  Sum_probs=159.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|...+.||+|+||.||+|+...                   ..+.+.+|+++++.++||||+++++++...     .
T Consensus        10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~   84 (276)
T 2h6d_A           10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTP-----T   84 (276)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----S
T ss_pred             eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecC-----C
Confidence            4678899999999999999987641                   134688999999999999999999998543     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++..
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~  161 (276)
T 2h6d_A           85 DFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMM  161 (276)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCC
T ss_pred             eEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeeccccccc
Confidence            4899999999999999986432        3467899999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ...       .......||+.|+|||++.+..+ +.++||||+|++++++.....++....  ..+... .+...   ..
T Consensus       162 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~--~~~~~~-~~~~~---~~  228 (276)
T 2h6d_A          162 SDG-------EFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH--VPTLFK-KIRGG---VF  228 (276)
T ss_dssp             CC--------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHH-HHHHC---CC
T ss_pred             CCC-------cceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc--HHHHHH-HhhcC---cc
Confidence            321       11223478999999999988775 689999999977666544333222111  111111 11110   00


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ...    +.+...+.+++.+|++.||++|||++|+++
T Consensus       229 ~~~----~~~~~~l~~li~~~l~~~p~~Rps~~~~l~  261 (276)
T 2h6d_A          229 YIP----EYLNRSVATLLMHMLQVDPLKRATIKDIRE  261 (276)
T ss_dssp             CCC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCc----hhcCHHHHHHHHHHccCChhhCCCHHHHHh
Confidence            001    111122334777999999999999999986

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.96  E-value=7.6e-31  Score=288.93  Aligned_cols=228  Identities=21%  Similarity=0.222  Sum_probs=162.5

Q ss_pred             hCCCCCceeecccCceeEEeccccCc------------------------HHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS------------------------WKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~------------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      .++|...+.||+|+||.||+|.....                        ...+.+|++++++++||||+++++++... 
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-   87 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE-   87 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS-
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC-
Confidence            35788999999999999999865411                        12478999999999999999999998432 


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc---eEEe
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT---AKVG  784 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~---~ki~  784 (929)
                           ..++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.   +||+
T Consensus        88 -----~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~  159 (322)
T 2ycf_A           88 -----DYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKIT  159 (322)
T ss_dssp             -----SEEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEEC
T ss_pred             -----ceEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEc
Confidence                 2799999999999999886433        2367899999999998   9999999999999987654   9999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      |||+++.....       .......||+.|+|||++.   ...++.++||||+|++++++.....++......  ..+..
T Consensus       160 Dfg~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~  230 (322)
T 2ycf_A          160 DFGHSKILGET-------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQ--VSLKD  230 (322)
T ss_dssp             CCTTCEECCCC-------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCS--SCHHH
T ss_pred             cCccceecccc-------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchH--HHHHH
Confidence            99999865321       1123457999999999973   567899999999998777655443333221110  00001


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .+...   ...........+...+.+++.+||+.||++||+++|+++
T Consensus       231 ~~~~~---~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~  274 (322)
T 2ycf_A          231 QITSG---KYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALR  274 (322)
T ss_dssp             HHHHT---CCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             HHHhC---ccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence            11110   000000111111222334777999999999999999984

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.96  E-value=5.1e-31  Score=307.24  Aligned_cols=227  Identities=23%  Similarity=0.305  Sum_probs=168.1

Q ss_pred             hCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|+..                   ...+.+.+|++++++++|||||++++++..     ..
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~   99 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-----KG   99 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----CC
Confidence            347888999999999999988754                   235678999999999999999999999854     34


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee---cCCCceEEeccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL---DEEMTAKVGDFGLA  789 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl---~~~~~~ki~DfGla  789 (929)
                      ..++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+   +.++.+||+|||+|
T Consensus       100 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a  176 (484)
T 3nyv_A          100 YFYLVGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLS  176 (484)
T ss_dssp             EEEEEECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHH
T ss_pred             EEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeee
Confidence            5899999999999998886433        3467899999999998   99999999999999   56789999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      +.....       ......+||+.|+|||++.+ .++.++||||+|+++|++.....++.....  .+++........  
T Consensus       177 ~~~~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~~~~i~~~~~--  244 (484)
T 3nyv_A          177 THFEAS-------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE--YDILKKVEKGKY--  244 (484)
T ss_dssp             HHBCCC-------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHCCC--
T ss_pred             EEcccc-------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH--HHHHHHHHcCCC--
Confidence            865321       12234579999999999876 699999999999877765544433322211  111111111110  


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ....+.+..++..+++++.+|++.||++|||++|+++
T Consensus       245 --~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~  281 (484)
T 3nyv_A          245 --TFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALD  281 (484)
T ss_dssp             --CCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             --CCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhh
Confidence              0111111122233344777999999999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=3.5e-29  Score=275.79  Aligned_cols=227  Identities=21%  Similarity=0.291  Sum_probs=206.6

Q ss_pred             CCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEE
Q 002376          327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL  406 (929)
Q Consensus       327 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  406 (929)
                      .++++.|+|++|+++ .+|..++.+. +|++|+|++|.++ .+|..++++++|++|+|++|+++ .+|..++.+++|++|
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~-~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLS-HLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGT-TCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCC-CCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence            468899999999998 7888888876 7999999999999 78889999999999999999998 778899999999999


Q ss_pred             EecCCcCCCCCcccccC---------CCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhh
Q 002376          407 GLAGNEIPGGIPNSLAN---------LKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEI  477 (929)
Q Consensus       407 ~L~~N~l~~~~p~~~~~---------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~  477 (929)
                      +|++|++.+.+|..+..         +++|++|+|++|+++ .+|..|.++++|++|+|++|++++ +        |..+
T Consensus       156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l--------~~~l  225 (328)
T 4fcg_A          156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-L--------GPAI  225 (328)
T ss_dssp             EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-C--------CGGG
T ss_pred             ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-C--------chhh
Confidence            99999888888887664         999999999999998 788889999999999999999974 3        6678


Q ss_pred             hcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCe
Q 002376          478 SRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRS  557 (929)
Q Consensus       478 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  557 (929)
                      ..+++|++|+|++|++.+.+|..|+++++|++|+|++|++.+.+|..++.+++|++|+|++|++.+.+|..+.++++|+.
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~  305 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI  305 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCcCcc
Q 002376          558 LNLTFNNLEG  567 (929)
Q Consensus       558 L~Ls~N~l~~  567 (929)
                      +++..|.+..
T Consensus       306 l~l~~~~~~~  315 (328)
T 4fcg_A          306 ILVPPHLQAQ  315 (328)
T ss_dssp             EECCGGGSCC
T ss_pred             EeCCHHHHHH
Confidence            9998777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.4e-29  Score=299.94  Aligned_cols=294  Identities=25%  Similarity=0.328  Sum_probs=161.7

Q ss_pred             CCCCCCCCCCCCCCCCCcceeeC------CCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCC
Q 002376           45 PSSPLSYWNPSSSPCTWPGVICN------NFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNL  118 (929)
Q Consensus        45 ~~~~l~~w~~~~~~c~w~gv~c~------~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l  118 (929)
                      ....+++|..+.+||.|+|..|.      .....++.|++++++++ .+|..+.  ++|++|+|++|+|+ .+|.   .+
T Consensus         8 ~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l   80 (622)
T 3g06_A            8 YDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP   80 (622)
T ss_dssp             --CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred             HHHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence            45566788878889999775321      11123667777777777 6666665  67777777777776 4554   45


Q ss_pred             CCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCC
Q 002376          119 FRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSR  198 (929)
Q Consensus       119 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~  198 (929)
                      ++|++|+|++|+|++ +|.   .+++|++|+|++|+|+ .+|.    .+++|+.|++++|++++ +|.           .
T Consensus        81 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~-----------~  139 (622)
T 3g06_A           81 PELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV-----------L  139 (622)
T ss_dssp             TTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC-----------C
T ss_pred             CCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC-----------C
Confidence            677777777777763 443   5566677777777666 3443    34556666666665532 221           1


Q ss_pred             CCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEE
Q 002376          199 LENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQII  278 (929)
Q Consensus       199 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L  278 (929)
                      +++|++|+|++|+++++ |.   .+.+|+.|++++|+|+                         + +|   ..+++|+.|
T Consensus       140 l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-------------------------~-l~---~~~~~L~~L  186 (622)
T 3g06_A          140 PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-------------------------S-LP---MLPSGLQEL  186 (622)
T ss_dssp             CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-------------------------C-CC---CCCTTCCEE
T ss_pred             CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCC-------------------------C-Cc---ccCCCCcEE
Confidence            24455555555554432 21   1233444444444443                         2 12   123445555


Q ss_pred             eccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEE
Q 002376          279 RMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL  358 (929)
Q Consensus       279 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L  358 (929)
                      ++++|.|++ +|..                                  .++|+.|++++|.++ .+|..+    .+|+.|
T Consensus       187 ~Ls~N~l~~-l~~~----------------------------------~~~L~~L~L~~N~l~-~l~~~~----~~L~~L  226 (622)
T 3g06_A          187 SVSDNQLAS-LPTL----------------------------------PSELYKLWAYNNRLT-SLPALP----SGLKEL  226 (622)
T ss_dssp             ECCSSCCSC-CCCC----------------------------------CTTCCEEECCSSCCS-SCCCCC----TTCCEE
T ss_pred             ECCCCCCCC-CCCc----------------------------------cchhhEEECcCCccc-ccCCCC----CCCCEE
Confidence            555555543 2210                                  134555555555554 233211    246666


Q ss_pred             EecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc
Q 002376          359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT  438 (929)
Q Consensus       359 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  438 (929)
                      +|++|+|++ +|   ..+++|+.|+|++|+|+ .+|.   .+++|++|+|++|+|+ .+|..+.++++|+.|+|++|.++
T Consensus       227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          227 IVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             EccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            666666654 33   33456666666666666 3343   4556666666666666 45566666666666666666666


Q ss_pred             cccCcccccc
Q 002376          439 GEIPISFGNF  448 (929)
Q Consensus       439 ~~~p~~~~~l  448 (929)
                      +..|..|..+
T Consensus       298 ~~~~~~l~~L  307 (622)
T 3g06_A          298 ERTLQALREI  307 (622)
T ss_dssp             HHHHHHHHHH
T ss_pred             CcCHHHHHhc
Confidence            6655554443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.2e-29  Score=283.24  Aligned_cols=273  Identities=20%  Similarity=0.269  Sum_probs=170.3

Q ss_pred             EEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcccccc
Q 002376          277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS  356 (929)
Q Consensus       277 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~  356 (929)
                      ..++++|.++ .+|..+.  ++|++|++++|++..++.       ..+.++++|++|+|++|++++..|..+..+. +|+
T Consensus        35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~  103 (353)
T 2z80_A           35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISN-------SDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLE  103 (353)
T ss_dssp             EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECT-------TTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCC
T ss_pred             EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCH-------HHhccCCCCCEEECCCCccCccCHhhcCCCC-CCC
Confidence            3455555554 2333322  245555555555544322       2345555666666666666655555555554 566


Q ss_pred             EEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccC-ccccCCCCCCEEEecCC-cCCCCCcccccCCCCCceecccC
Q 002376          357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIP-IEIGQLQGLQVLGLAGN-EIPGGIPNSLANLKKLNQIDLSG  434 (929)
Q Consensus       357 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~  434 (929)
                      +|+|++|+|++..+..|+++++|++|+|++|++++..+ ..+..+++|++|++++| .+.+..+..|.++++|++|++++
T Consensus       104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~  183 (353)
T 2z80_A          104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA  183 (353)
T ss_dssp             EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence            66666666665444446666666666666666664333 35666666666666666 35555556666777777777777


Q ss_pred             cccccccCcccccccccceecccCCcCCCCCCCCcccCCch-hhhcccCccEEEecCCCCCCCCCcchh---cCcCccee
Q 002376          435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE-EISRLENVVTIDLSDNSLSGNLPNSLK---NCKSLEEL  510 (929)
Q Consensus       435 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~-~~~~l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L  510 (929)
                      |++++..|..|.++++|++|++++|+++. +        |. .+..+++|+.|+|++|++++..+..+.   ....++.+
T Consensus       184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l  254 (353)
T 2z80_A          184 SDLQSYEPKSLKSIQNVSHLILHMKQHIL-L--------LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF  254 (353)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSCSTT-H--------HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEE
T ss_pred             CCcCccCHHHHhccccCCeecCCCCcccc-c--------hhhhhhhcccccEEECCCCccccccccccccccccchhhcc
Confidence            77776667777777777777777777642 2        32 234466777777777777765544332   34566777


Q ss_pred             ecccccccc----cCCccccCCCCCCEEECCCCcCCCcCCcc-cccCCCCCeEeCCCCcCcccCC
Q 002376          511 LMAYNQFSG----PIPNIVAELKGLEVLDLSSNKLSGSIPSD-LQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       511 ~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      +|++|.+++    .+|..+..+++|+.|||++|+++. +|.. |.++++|++|+|++|++++..|
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            777777765    367778888888888888888884 5544 5888888888888888887655

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.96  E-value=5e-32  Score=299.62  Aligned_cols=175  Identities=27%  Similarity=0.390  Sum_probs=138.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|+...                  ..+.+.+|++++++++||||+++++++..     ...
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~   98 (331)
T 4aaa_A           24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKK-----KKR   98 (331)
T ss_dssp             GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred             hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeec-----CCE
Confidence            3578889999999999999987651                  13457899999999999999999999854     334


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+++++|.++.....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++...
T Consensus        99 ~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~  175 (331)
T 4aaa_A           99 WYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLA  175 (331)
T ss_dssp             EEEEEECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC----
T ss_pred             EEEEEecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeec
Confidence            899999999998888764322        3467999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ...      .......||+.|+|||++.+. .++.++||||+|++++++.....++
T Consensus       176 ~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf  225 (331)
T 4aaa_A          176 APG------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLF  225 (331)
T ss_dssp             --------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             CCc------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCC
Confidence            211      112334789999999999876 6899999999998877765554333

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.96  E-value=2.4e-31  Score=287.64  Aligned_cols=219  Identities=20%  Similarity=0.230  Sum_probs=160.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||.||+|+...                  ...++.+|+..+.++ +||||+++++++.+.     .
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~-----~   84 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED-----D   84 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET-----T
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC-----C
Confidence            4678899999999999999987641                  245788999999999 999999999998543     3


Q ss_pred             eEEEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-----------
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----------  777 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-----------  777 (929)
                      ..++||||+++|+|.+++...            ..++.|++.||+|||+.   +|+||||||+||+++.           
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~  161 (289)
T 1x8b_A           85 HMLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEG  161 (289)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC------------
T ss_pred             eEEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccc
Confidence            589999999999999998642            12367999999999998   9999999999999984           


Q ss_pred             --------CCceEEeccccccccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          778 --------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       778 --------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                              ...+||+|||.++....          .....||+.|+|||++.+. .++.++||||+|++++++..     
T Consensus       162 ~~~~~~~~~~~~kl~Dfg~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-----  226 (289)
T 1x8b_A          162 DEDDWASNKVMFKIGDLGHVTRISS----------PQVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAG-----  226 (289)
T ss_dssp             --------CCCEEECCCTTCEETTC----------SCCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTT-----
T ss_pred             ccccccCCceEEEEcccccccccCC----------ccccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhc-----
Confidence                    44799999999986532          1123589999999999876 56789999999977665432     


Q ss_pred             hcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          849 SNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       849 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +..+....+.. ..+.....  ......    +...+.+++.+||+.||++|||++|+++
T Consensus       227 ~~~~~~~~~~~-~~~~~~~~--~~~~~~----~~~~~~~li~~~l~~dp~~Rps~~~ll~  279 (289)
T 1x8b_A          227 AEPLPRNGDQW-HEIRQGRL--PRIPQV----LSQEFTELLKVMIHPDPERRPSAMALVK  279 (289)
T ss_dssp             CCCCCSSSHHH-HHHHTTCC--CCCSSC----CCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             CCCCCcchhHH-HHHHcCCC--CCCCcc----cCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence            22111000000 00111000  000111    1222333777999999999999999875

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.96  E-value=1.6e-30  Score=304.25  Aligned_cols=228  Identities=22%  Similarity=0.255  Sum_probs=165.5

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-----------------------------cHHHHHHHHHHHHccCCccccceee
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-----------------------------SWKSFIAECETLRNVRHRNLVKLIT  709 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------------------~~~~~~~E~~~l~~l~Hpniv~l~~  709 (929)
                      ..++|...+.||+|+||.||+|+...                             ..+.+.+|+.++++++|||||++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            35689999999999999999887541                             1346889999999999999999999


Q ss_pred             ecccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC--
Q 002376          710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM--  779 (929)
Q Consensus       710 ~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~--  779 (929)
                      +|.+     ....|+|||||++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++  
T Consensus       114 ~~~~-----~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~  185 (504)
T 3q5i_A          114 VFED-----KKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSL  185 (504)
T ss_dssp             EEEC-----SSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCC
T ss_pred             EEEc-----CCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCC
Confidence            9954     345899999999999998885332        3467999999999998   999999999999998776  


Q ss_pred             -ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc
Q 002376          780 -TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV  858 (929)
Q Consensus       780 -~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~  858 (929)
                       .+||+|||+|+.....       ......+||+.|+|||++. +.++.++||||+|+++|++..+..++.....  .++
T Consensus       186 ~~~kl~Dfg~a~~~~~~-------~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~--~~~  255 (504)
T 3q5i_A          186 LNIKIVDFGLSSFFSKD-------YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQND--QDI  255 (504)
T ss_dssp             SSEEECCCTTCEECCTT-------SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH
T ss_pred             ccEEEEECCCCEEcCCC-------CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH--HHH
Confidence             6999999999865321       1223457999999999986 4699999999999877765544333322211  111


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      +......    ........+..++..+++++.+|++.||++|||++|+++
T Consensus       256 ~~~i~~~----~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~  301 (504)
T 3q5i_A          256 IKKVEKG----KYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALN  301 (504)
T ss_dssp             HHHHHHC----CCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHHHcC----CCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence            1111111    000011111112223344777999999999999999974

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.96  E-value=3.4e-31  Score=295.73  Aligned_cols=245  Identities=22%  Similarity=0.279  Sum_probs=168.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||.||+|++..                 ....+.+|++++++++||||+++++++...........
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            4689999999999999999987651                 13467899999999999999999999876443344568


Q ss_pred             EEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++||||++ |+|.+++...       ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++.....
T Consensus        90 ~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~  165 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARIIDES  165 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC--
T ss_pred             EEEEeccC-ccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccccccc
Confidence            99999997 6898887642       23467999999999998   9999999999999999999999999999876432


Q ss_pred             cCCCCC----ccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCch----------------
Q 002376          796 VDNQSS----ISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPEN----------------  854 (929)
Q Consensus       796 ~~~~~~----~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~----------------  854 (929)
                      ......    .......+||+.|+|||++.+ ..++.++||||+|++++++.....++......                
T Consensus       166 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~  245 (353)
T 2b9h_A          166 AADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGTPHSD  245 (353)
T ss_dssp             --------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCST
T ss_pred             cccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCchh
Confidence            111110    011234578999999998764 67899999999998877765444333222110                


Q ss_pred             --hhhccChHHHHhhcccch---h-hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          855 --VLQVLDPELRQLMTSNES---Q-TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       855 --~~~~~~~~l~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ..................   . .......+...+.+++.+||+.||++|||++|+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (353)
T 2b9h_A          246 NDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE  305 (353)
T ss_dssp             TTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             ccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence              000011111111100000   0 00000011222334777999999999999999986

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.96  E-value=7.4e-31  Score=286.62  Aligned_cols=228  Identities=20%  Similarity=0.307  Sum_probs=162.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC--------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG--------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~--------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||.||++....                    ..+.+.+|++++++++||||+++++++...+   .
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~---~   80 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEE---K   80 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC-----
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCC---C
Confidence            4689999999999999999987641                    2356889999999999999999999985422   2


Q ss_pred             ceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ...++||||+++| +.+++...          ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        81 ~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~  156 (305)
T 2wtk_C           81 QKMYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVA  156 (305)
T ss_dssp             -CEEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTC
T ss_pred             CeEEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccc
Confidence            3589999999876 66665421          12367899999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhh
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      +......    .........||+.|+|||++.+..  ++.++||||+|++++++.....++....  ..+... .+..  
T Consensus       157 ~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~--~~~~~~-~i~~--  227 (305)
T 2wtk_C          157 EALHPFA----ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN--IYKLFE-NIGK--  227 (305)
T ss_dssp             EECCTTC----SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS--HHHHHH-HHHH--
T ss_pred             cccCccc----cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch--HHHHHH-HHhc--
Confidence            8653211    111223456999999999988654  3789999999977766554433322111  111111 1111  


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       .........++    .+.+++.+||+.||++|||++|+++
T Consensus       228 -~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~~ll~  263 (305)
T 2wtk_C          228 -GSYAIPGDCGP----PLSDLLKGMLEYEPAKRFSIRQIRQ  263 (305)
T ss_dssp             -CCCCCCSSSCH----HHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -CCCCCCCccCH----HHHHHHHHHccCChhhCCCHHHHhc
Confidence             00011111112    2233777999999999999999985

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.96  E-value=2.2e-31  Score=304.64  Aligned_cols=169  Identities=26%  Similarity=0.350  Sum_probs=139.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHcc------CCccccceeeecccCCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNV------RHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l------~Hpniv~l~~~~~~~~~~~  718 (929)
                      ..+|+..+.||+|+||.||+|....               ..+.+.+|+++++.+      +|+||+++++++...    
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~----  171 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR----  171 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET----
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC----
Confidence            4578999999999999999996652               135677899888887      577999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc--eEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT--AKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~--~ki~Df  786 (929)
                       ...++||||++ |+|.+++....          .++.||+.||+|||+.   +|+||||||+|||++.++.  +||+||
T Consensus       172 -~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DF  246 (429)
T 3kvw_A          172 -NHICMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDF  246 (429)
T ss_dssp             -TEEEEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCC
T ss_pred             -CeEEEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeec
Confidence             45899999996 68988876432          3467999999999998   9999999999999999887  999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      |+|+....         .....+||+.|||||++.+..++.++||||+|++++++.....
T Consensus       247 G~a~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~  297 (429)
T 3kvw_A          247 GSSCYEHQ---------RVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYP  297 (429)
T ss_dssp             TTCEETTC---------CCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ccceecCC---------cccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCC
Confidence            99975421         1223578999999999999999999999999988887665543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.96  E-value=2.7e-31  Score=292.03  Aligned_cols=242  Identities=24%  Similarity=0.292  Sum_probs=161.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCC-------
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-------  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-------  716 (929)
                      .++|+..+.||+|+||.||+|....                ..+++.+|++++++++||||+++++++.....       
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            3578899999999999999987652                24578899999999999999999998754321       


Q ss_pred             --CCcceEEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEecc
Q 002376          717 --KNMEFLALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDF  786 (929)
Q Consensus       717 --~~~~~~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~Df  786 (929)
                        ......++||||++ |+|.++++...       .++.|++.||+|||+.   +|+||||||+||+++ +++.+||+||
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~kl~Df  165 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLKIGDF  165 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEEECCC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEEEccC
Confidence              12356899999997 69999886432       3467999999999998   999999999999997 5679999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhhcc----
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQVL----  859 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~~~----  859 (929)
                      |+++........   ........||..|+|||++.+ ..++.++||||+|++++++.....++..... . ...+.    
T Consensus       166 g~~~~~~~~~~~---~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  242 (320)
T 2i6l_A          166 GLARIMDPHYSH---KGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIP  242 (320)
T ss_dssp             TTCBCC-----------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSC
T ss_pred             ccccccCCCccc---ccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcC
Confidence            999876322111   111233467999999998865 6789999999999887776554433322221 0 00000    


Q ss_pred             --ChH------------HHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          860 --DPE------------LRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       860 --~~~------------l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ...            +.................+...+++++.+|++.||++|||++|+++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  305 (320)
T 2i6l_A          243 VVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS  305 (320)
T ss_dssp             CCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence              000            0000000000000000112223344778999999999999999975

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.96  E-value=4.5e-31  Score=287.32  Aligned_cols=229  Identities=22%  Similarity=0.252  Sum_probs=167.0

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------------cHHHHHHHHHHHHccC-Cccccceeeecc
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------------SWKSFIAECETLRNVR-HRNLVKLITSCS  712 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~  712 (929)
                      ..++|+..+.||+|+||.||+|....                         ..+.+.+|+++++++. ||||+++++++.
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (298)
T 1phk_A           15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE   94 (298)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence            35689999999999999999987641                         1246779999999996 999999999985


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEe
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVG  784 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~  784 (929)
                      .     ....++||||+++|+|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.++.+||+
T Consensus        95 ~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~  166 (298)
T 1phk_A           95 T-----NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLT  166 (298)
T ss_dssp             C-----SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEEC
T ss_pred             c-----CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEe
Confidence            4     345899999999999999986432        3367899999999998   99999999999999999999999


Q ss_pred             ccccccccccccCCCCCccccceeccccccccccccC------CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhc
Q 002376          785 DFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL------GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQV  858 (929)
Q Consensus       785 DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~  858 (929)
                      |||+++.....       .......||+.|+|||++.      ...++.++||||+|++++++.....++.....  .+.
T Consensus       167 dfg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~  237 (298)
T 1phk_A          167 DFGFSCQLDPG-------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLM  237 (298)
T ss_dssp             CCTTCEECCTT-------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHH
T ss_pred             cccchhhcCCC-------cccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccH--HHH
Confidence            99999865321       1123357899999999885      45689999999999777665544333322111  111


Q ss_pred             cChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       859 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .. .+..   .............+..+.+++.+||+.||++|||++|+++
T Consensus       238 ~~-~~~~---~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  283 (298)
T 1phk_A          238 LR-MIMS---GNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  283 (298)
T ss_dssp             HH-HHHH---TCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HH-HHhc---CCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence            10 1111   0000000011112223334777999999999999999975

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.96  E-value=3.4e-31  Score=297.57  Aligned_cols=236  Identities=23%  Similarity=0.261  Sum_probs=164.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC-Ccc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~-~~~  720 (929)
                      .++|...+.||+|+||.||+|.+..                  ..+.+.+|+.++++++||||+++++++...+.. ...
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            4688899999999999999996541                  135788999999999999999999999764431 112


Q ss_pred             eEEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ..++||||++ |+|.+++...      ..++.|++.||+|||+.   +|+||||||+||+++.++.+||+|||+++....
T Consensus       121 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~  196 (371)
T 4exu_A          121 DFYLVMPFMQ-TDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA  196 (371)
T ss_dssp             CCEEEEECCC-EEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC-----
T ss_pred             eEEEEEcccc-ccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCccccccc
Confidence            3499999997 6888776532      23467999999999998   999999999999999999999999999986432


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc-------------
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV-------------  858 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~-------------  858 (929)
                      .         .....||+.|+|||++.+ ..++.++||||+|++++++.....++.....  ....+             
T Consensus       197 ~---------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  267 (371)
T 4exu_A          197 E---------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ  267 (371)
T ss_dssp             ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred             C---------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence            1         233578999999999887 6799999999999887776555444332211  00000             


Q ss_pred             -c-ChHHHHhh---cccchh-hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          859 -L-DPELRQLM---TSNESQ-TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       859 -~-~~~l~~~~---~~~~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       + +.......   ...... ...........+.+++.+|++.||++|||++|+++
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  323 (371)
T 4exu_A          268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  323 (371)
T ss_dssp             TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence             0 00000000   000000 00000011223334788999999999999999975

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.96  E-value=3.3e-31  Score=300.76  Aligned_cols=176  Identities=25%  Similarity=0.378  Sum_probs=140.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccC--------CccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVR--------HRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~--------Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..+.||+|+||+||+|+...               ..+.+.+|++++++++        ||||+++++++.... 
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~-  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG-  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE-
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC-
Confidence            3679999999999999999996541               2457889999999985        888999999986432 


Q ss_pred             CCcceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-------
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-------  779 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-------  779 (929)
                      ......++||||+ +|++.+++...          +.++.|++.||+|||+.+  +|+||||||+|||++.++       
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~~  191 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRLA  191 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHHH
T ss_pred             CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhhh
Confidence            1344689999999 56666655422          234679999999999853  799999999999999775       


Q ss_pred             ------------------------------------------ceEEeccccccccccccCCCCCccccceeccccccccc
Q 002376          780 ------------------------------------------TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP  817 (929)
Q Consensus       780 ------------------------------------------~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aP  817 (929)
                                                                .+||+|||+|+.....         ....+||+.||||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~---------~~~~~gt~~y~aP  262 (397)
T 1wak_A          192 AEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH---------FTEDIQTRQYRSL  262 (397)
T ss_dssp             HHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC---------SCSCCSCGGGCCH
T ss_pred             hhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc---------CccCCCCCcccCC
Confidence                                                      7999999999865321         2234789999999


Q ss_pred             cccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          818 EYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       818 E~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      |++.+..++.++||||+|++++++.....++
T Consensus       263 E~~~~~~~~~~~DiwslG~il~elltg~~pf  293 (397)
T 1wak_A          263 EVLIGSGYNTPADIWSTACMAFELATGDYLF  293 (397)
T ss_dssp             HHHHTSCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             hhhcCCCCCcHHHHHHHHHHHHHHhhCCCCC
Confidence            9999999999999999998888766655444

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.96  E-value=3.7e-31  Score=296.25  Aligned_cols=185  Identities=24%  Similarity=0.355  Sum_probs=134.0

Q ss_pred             hHHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCC-
Q 002376          653 YDELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-  716 (929)
Q Consensus       653 ~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-  716 (929)
                      -.+.....++|+..+.||+|+||.||+|++..               ..+.+.+|++.++.++||||+++++++...+. 
T Consensus        15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            35667778999999999999999999987651               13467788888999999999999999876432 


Q ss_pred             -CCcceEEEEEEecCCCCcccccc----cc--------ccccccHHHHHHHhh--hCCCCCEEecCCCCCCeeecC-CCc
Q 002376          717 -KNMEFLALVYEFLSNGSLGDWIH----GE--------RKNELDITSALDYLH--NDCEVPVVHSDLKPGNILLDE-EMT  780 (929)
Q Consensus       717 -~~~~~~~lV~e~~~~gsL~~~l~----~~--------~~~~~~ia~aL~yLH--~~~~~~iiHrDlk~~NILl~~-~~~  780 (929)
                       ....+.++||||+++ ++.+.+.    ..        ..++.|++.|++|||  +.   +|+||||||+|||++. ++.
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~~  170 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADGT  170 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTTE
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCCc
Confidence             223457899999986 4443332    11        134678999999999  66   9999999999999996 899


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhh
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      +||+|||+++.....       .......||+.|+|||++.+.. ++.++||||+|++++++.....++
T Consensus       171 ~kl~Dfg~a~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf  232 (360)
T 3e3p_A          171 LKLCDFGSAKKLSPS-------EPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIF  232 (360)
T ss_dssp             EEECCCTTCBCCCTT-------SCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             EEEeeCCCceecCCC-------CCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999865322       1122347899999999987655 899999999998877765554443

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.96  E-value=3.5e-31  Score=292.13  Aligned_cols=238  Identities=26%  Similarity=0.341  Sum_probs=168.8

Q ss_pred             HhhCCCCCceeecccCceeEEecccc-C------------------cHHHHHHHHHHHHcc---CCccccceeeecccCC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT-G------------------SWKSFIAECETLRNV---RHRNLVKLITSCSSLD  715 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~-~------------------~~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~  715 (929)
                      ++.++|+..+.||+|+||.||+|++. .                  ....+.+|+.+++.+   +||||+++++++....
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            45678999999999999999999762 0                  123577888887776   8999999999986433


Q ss_pred             CCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEec
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                      .......++||||++ |+|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.++.+||+|
T Consensus        88 ~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~D  163 (326)
T 1blx_A           88 TDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLAD  163 (326)
T ss_dssp             CSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECS
T ss_pred             cCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEec
Confidence            234456899999997 69999886432          2367899999999998   999999999999999999999999


Q ss_pred             cccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          786 FGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       786 fGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      ||+++.....       .......||+.|+|||++.+..++.++||||+|++++++.....++.....  .+.+...+..
T Consensus       164 fg~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~i~~~  234 (326)
T 1blx_A          164 FGLARIYSFQ-------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSD--VDQLGKILDV  234 (326)
T ss_dssp             CCSCCCCCGG-------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHH
T ss_pred             CcccccccCC-------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCH--HHHHHHHHHH
Confidence            9999865321       122345789999999999999999999999999877776544433322211  0000000000


Q ss_pred             h------------------hcc-cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 L------------------MTS-NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ~------------------~~~-~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .                  ... ...........+...+++++.+||+.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~  296 (326)
T 1blx_A          235 IGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  296 (326)
T ss_dssp             HCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             cCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence            0                  000 000000000112223344777999999999999999984

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=2.5e-29  Score=274.66  Aligned_cols=210  Identities=19%  Similarity=0.217  Sum_probs=104.8

Q ss_pred             cCCCCCCCEEEccCCcccc--ccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccC-ccccCC
Q 002376          324 LTNSTHLNYLALDGNQFEG--KIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIP-IEIGQL  400 (929)
Q Consensus       324 ~~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l  400 (929)
                      |.++++|++|+|++|+++.  ..|..+..+. +|++|+|++|.+.. +|..+..+++|++|++++|++++..+ ..+..+
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~-~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  125 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT-SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL  125 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCS-CCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred             hhccccCCEEECCCCccCcccCccccccccc-ccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhc
Confidence            3444555555555555441  1233333333 45555555555542 33334455555555555555543332 344555


Q ss_pred             CCCCEEEecCCcCCCCCcccccCCCCCceecccCccccc-ccCcccccccccceecccCCcCCCCCCCCcccCCchhhhc
Q 002376          401 QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG-EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR  479 (929)
Q Consensus       401 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~  479 (929)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+++ ..|..|..+++|++|++++|++++..        |..+..
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~  197 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--------PTAFNS  197 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------TTTTTT
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcC--------HHHhcC
Confidence            555555555555555555555555555555555555544 34555555555555555555554322        333444


Q ss_pred             ccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCC-CCCEEECCCCcCCC
Q 002376          480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK-GLEVLDLSSNKLSG  543 (929)
Q Consensus       480 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~  543 (929)
                      +++|+.|+|++|++++..+..+..+++|++|+|++|++++.+|..+..++ +|++|+|++|.+++
T Consensus       198 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            44555555555555544444455555555555555555555555555552 55555555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=282.94  Aligned_cols=250  Identities=24%  Similarity=0.275  Sum_probs=221.6

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      ....++.+++.++ .+|..+.   .+++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            3567888888887 6787654   47999999999999998999999999999999999999888889999999999999


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                      ++|+|++..+..|..+++|++|+|++|+++...+..|.++++|+.|+|++|+..+.++       +..+..+++|++|+|
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------~~~~~~l~~L~~L~L  192 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-------EGAFEGLSNLRYLNL  192 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------TTTTTTCSSCCEEEC
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-------cchhhcccccCeecC
Confidence            9999998888889999999999999999998888889999999999999966544554       345778889999999


Q ss_pred             cCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      ++|+++ .+| .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++.
T Consensus       193 ~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          193 AMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             TTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            999998 455 488999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCC-CCCCCCCcccccCCCCCcC
Q 002376          569 VPSE-GIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       569 ~p~~-~~~~~l~~l~l~~N~~~c~  591 (929)
                      .+.. ..+++++.+++++||+.|.
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCEECS
T ss_pred             ChhHhccccCCCEEEcCCCCccCC
Confidence            7654 4578899999999999994

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.5e-28  Score=283.82  Aligned_cols=250  Identities=24%  Similarity=0.260  Sum_probs=215.5

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      ....++.+++.++ .+|..+.   .+++.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3457788888887 6776554   47999999999999988999999999999999999999888889999999999999


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                      ++|+|++..+..|.++++|++|+|++|+++...+..|.++++|+.|++++|+..+.++       +..+..+++|++|+|
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------~~~~~~l~~L~~L~L  203 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-------EGAFEGLFNLKYLNL  203 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------TTTTTTCTTCCEEEC
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-------hhhccCCCCCCEEEC
Confidence            9999998888889999999999999999998777789999999999999855444554       335677889999999


Q ss_pred             cCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      ++|++++. | .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++.
T Consensus       204 ~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  281 (452)
T 3zyi_A          204 GMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL  281 (452)
T ss_dssp             TTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc
Confidence            99999854 4 488899999999999999999999999999999999999999998899999999999999999999977


Q ss_pred             CCCC-CCCCCCCcccccCCCCCcC
Q 002376          569 VPSE-GIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       569 ~p~~-~~~~~l~~l~l~~N~~~c~  591 (929)
                      .+.. ..+++++.+++++||+.|.
T Consensus       282 ~~~~~~~l~~L~~L~L~~Np~~Cd  305 (452)
T 3zyi_A          282 PHDLFTPLRYLVELHLHHNPWNCD  305 (452)
T ss_dssp             CTTSSTTCTTCCEEECCSSCEECS
T ss_pred             ChHHhccccCCCEEEccCCCcCCC
Confidence            6654 4478889999999999884

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.96  E-value=1.7e-31  Score=289.37  Aligned_cols=227  Identities=18%  Similarity=0.227  Sum_probs=151.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|+...                  ..+.+.++...++.++||||+++++++...+     .
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~-----~   80 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREG-----D   80 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----S
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccC-----C
Confidence            4678899999999999999988641                  1123344555688889999999999996533     3


Q ss_pred             EEEEEEecCCCCccccccc------------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          722 LALVYEFLSNGSLGDWIHG------------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      .++||||++ |+|.++++.            ...++.|++.||+|||+..  +|+||||||+||+++.++.+||+|||++
T Consensus        81 ~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~  157 (290)
T 3fme_A           81 VWICMELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGIS  157 (290)
T ss_dssp             EEEEEECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC---
T ss_pred             EEEEEehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCc
Confidence            899999997 588777642            1134679999999999842  7999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceecccccccccccc----CCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYG----LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      +.....       .......||+.|+|||++    .+..++.++||||+|++++++.+...++......... +......
T Consensus       158 ~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~-~~~~~~~  229 (290)
T 3fme_A          158 GYLVDD-------VAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQ-LKQVVEE  229 (290)
T ss_dssp             -------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHH-HHHHHHS
T ss_pred             cccccc-------ccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHH-HHHHhcc
Confidence            865322       112234699999999996    5667899999999998777765554444322211111 1111111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......  ...    .+..+.+++.+|++.||++|||++|+++
T Consensus       230 ~~~~~~--~~~----~~~~~~~li~~~l~~~p~~Rpt~~e~l~  266 (290)
T 3fme_A          230 PSPQLP--ADK----FSAEFVDFTSQCLKKNSKERPTYPELMQ  266 (290)
T ss_dssp             CCCCCC--TTT----SCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCcc--ccc----CCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence            000000  001    1122233777999999999999999986

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6e-32  Score=323.83  Aligned_cols=419  Identities=15%  Similarity=0.098  Sum_probs=216.3

Q ss_pred             CCcCCCCCCCCcEEeCCCCCC---CCCcccccc------------cccccceecccccccCCCCChhhhcc-C-CCCcEE
Q 002376          111 LPREIGNLFRLRVLNISFNNL---QGELPVNIS------------KLTELKMLDLMANKITGRVTDDQLRN-L-RSLQVL  173 (929)
Q Consensus       111 ~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~------------~l~~L~~L~Ls~N~l~~~i~~~~~~~-l-~~L~~L  173 (929)
                      .+..+..+++|++|+|+++..   .+.+|..++            .+++|++|+|++|.+++..+. .+.. + .+|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEE
Confidence            344456778899999877532   133443333            566677777777666532222 2333 2 236666


Q ss_pred             EccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCc----cCCccccCCCCceEEeeecCCCCcCCcccccCCC
Q 002376          174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT----VPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP  249 (929)
Q Consensus       174 ~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  249 (929)
                      +|++|.-  ..+..    ++....++++|++|+|++|.+++.    ++..+.++++|++|+|++|.+++.-+        
T Consensus       144 ~L~~~~~--~~~~~----l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~--------  209 (592)
T 3ogk_B          144 KLDKCSG--FTTDG----LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP--------  209 (592)
T ss_dssp             EEESCEE--EEHHH----HHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCH--------
T ss_pred             ECcCCCC--cCHHH----HHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCH--------
Confidence            6666541  00000    111123456666666666665544    22233455666666666666542111        


Q ss_pred             CcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCC
Q 002376          250 NLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTH  329 (929)
Q Consensus       250 ~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~  329 (929)
                                   +.++..+.++++|+.|++++|.+.+ +|..+.++++|+.|+++.+......    ......+..+++
T Consensus       210 -------------~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~~~~  271 (592)
T 3ogk_B          210 -------------KDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM----PEKYMNLVFPRK  271 (592)
T ss_dssp             -------------HHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC----TTSSSCCCCCTT
T ss_pred             -------------HHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch----HHHHHHhhcccc
Confidence                         1122223344445555555544443 3344444455555554431111000    011133445566


Q ss_pred             CCEEEccCCccccccCchhhhccccccEEEecCCccccccC-CCCCCCCcccEEEeeCCCCC-cccCccccCCCCCCEEE
Q 002376          330 LNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIP-ASIGRLRSLTLLDLSYNSIS-GEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       330 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~  407 (929)
                      |+.|+++++.. +.+|..+..++ +|++|+|++|.+++... ..+..+++|++|+|+ |.+. +.++..+..+++|++|+
T Consensus       272 L~~L~l~~~~~-~~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~  348 (592)
T 3ogk_B          272 LCRLGLSYMGP-NEMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLR  348 (592)
T ss_dssp             CCEEEETTCCT-TTGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEE
T ss_pred             ccccCccccch-hHHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEE
Confidence            66666665432 24555554444 56666666666554332 234566667777776 3332 22333335566677777


Q ss_pred             ec-----------CCcCCCC-CcccccCCCCCceecccCcccccccCccccc-ccccceeccc----CCcCCCCCCCCcc
Q 002376          408 LA-----------GNEIPGG-IPNSLANLKKLNQIDLSGNELTGEIPISFGN-FQSLLSIDLS----NNRINGNIPKGIL  470 (929)
Q Consensus       408 L~-----------~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~g~i~~~~~  470 (929)
                      ++           .|.+++. ++..+..+++|++|+++.|++++..+..+.. +++|+.|+++    .|.+++. |..  
T Consensus       349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~--  425 (592)
T 3ogk_B          349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD--  425 (592)
T ss_dssp             EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH--
T ss_pred             eecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH--
Confidence            76           2455432 2222344666777777666666655555544 6667777774    5555532 000  


Q ss_pred             cCCchhhhcccCccEEEecCC--CCCCCCCcchhc-CcCcceeecccccccc-cCCccccCCCCCCEEECCCCcCCCc-C
Q 002376          471 RPLPEEISRLENVVTIDLSDN--SLSGNLPNSLKN-CKSLEELLMAYNQFSG-PIPNIVAELKGLEVLDLSSNKLSGS-I  545 (929)
Q Consensus       471 ~~~p~~~~~l~~L~~LdLs~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~-~  545 (929)
                      ..++..+..+++|+.|+|+++  .+++..+..++. +++|++|+|++|++++ .++..+..+++|++|+|++|.+++. +
T Consensus       426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  505 (592)
T 3ogk_B          426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI  505 (592)
T ss_dssp             HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred             HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence            001333555667777777643  255444444433 6667777777777665 3444556667777777777776543 2


Q ss_pred             CcccccCCCCCeEeCCCCcCccc
Q 002376          546 PSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       546 p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      +..+..+++|++|+|++|+++..
T Consensus       506 ~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          506 AAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhcCccCeeECcCCcCCHH
Confidence            33345567777777777776543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=5.2e-30  Score=280.69  Aligned_cols=226  Identities=25%  Similarity=0.299  Sum_probs=187.6

Q ss_pred             CCEEEccCCcc-ccccCchhh-------hccccccEEEecCCccccccCCCC--CCCCcccEEEeeCCCCCcccCccccC
Q 002376          330 LNYLALDGNQF-EGKIPESIG-------NFSNELSKLYLGGNHIYGKIPASI--GRLRSLTLLDLSYNSISGEIPIEIGQ  399 (929)
Q Consensus       330 L~~L~Ls~N~l-~~~~p~~~~-------~~~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p~~~~~  399 (929)
                      |+.|+|++|++ .+.+|..+.       .+. +|++|+|++|++++.+|..+  +.+++|++|+|++|++++. |..++.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~  142 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAE  142 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHH
Confidence            66666777776 345666554       455 79999999999998888876  8999999999999999987 888888


Q ss_pred             C-----CCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccc--cCccc--ccccccceecccCCcCCCCCCCCcc
Q 002376          400 L-----QGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE--IPISF--GNFQSLLSIDLSNNRINGNIPKGIL  470 (929)
Q Consensus       400 l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~g~i~~~~~  470 (929)
                      +     ++|++|+|++|++++..|..|.++++|++|+|++|++.+.  .|..+  .++++|++|+|++|+|++. +    
T Consensus       143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~----  217 (312)
T 1wwl_A          143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-S----  217 (312)
T ss_dssp             HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-H----
T ss_pred             HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-H----
Confidence            7     8999999999999998889999999999999999998765  23333  8899999999999999731 0    


Q ss_pred             cCCc-hhhhcccCccEEEecCCCCCCCCC-cchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcc
Q 002376          471 RPLP-EEISRLENVVTIDLSDNSLSGNLP-NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD  548 (929)
Q Consensus       471 ~~~p-~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  548 (929)
                       .++ ..+..+++|++|||++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.  ++|++|||++|+|++. |. 
T Consensus       218 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-  291 (312)
T 1wwl_A          218 -GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-  291 (312)
T ss_dssp             -HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-
T ss_pred             -HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-
Confidence             112 234577899999999999998775 56677899999999999999 6777666  8999999999999976 66 


Q ss_pred             cccCCCCCeEeCCCCcCccc
Q 002376          549 LQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       549 ~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      +..+++|++|++++|++++.
T Consensus       292 ~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             TTTSCEEEEEECTTCTTTCC
T ss_pred             HhhCCCCCEEeccCCCCCCC
Confidence            89999999999999999863

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.96  E-value=4.2e-30  Score=286.30  Aligned_cols=227  Identities=17%  Similarity=0.255  Sum_probs=166.6

Q ss_pred             hCCCCCceeecccCceeEEeccccCc-------------------------------HHHHHHHHHHHHccCCcccccee
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTGS-------------------------------WKSFIAECETLRNVRHRNLVKLI  708 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------------------~~~~~~E~~~l~~l~Hpniv~l~  708 (929)
                      .++|...+.||+|+||.||+|+..+.                               .+.|.+|++++++++||||++++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             cCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            46899999999999999999876410                               07899999999999999999999


Q ss_pred             eecccCCCCCcceEEEEEEecCCCCcccc------cccc--c--------cccccHHHHHHHhhh-CCCCCEEecCCCCC
Q 002376          709 TSCSSLDSKNMEFLALVYEFLSNGSLGDW------IHGE--R--------KNELDITSALDYLHN-DCEVPVVHSDLKPG  771 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~~~~gsL~~~------l~~~--~--------~~~~~ia~aL~yLH~-~~~~~iiHrDlk~~  771 (929)
                      +++...     ...++||||+++|+|.++      +...  .        .++.|++.||+|||+ .   +|+||||||+
T Consensus       110 ~~~~~~-----~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~  181 (348)
T 2pml_X          110 GIITNY-----DEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPS  181 (348)
T ss_dssp             EEEESS-----SEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGG
T ss_pred             EEEeeC-----CeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChH
Confidence            998653     358999999999999998      5431  1        236789999999998 7   9999999999


Q ss_pred             CeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCC-CCCC-CCCCCCCcCCCCCcchhHHhhh
Q 002376          772 NILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPST-AGDVPTSESFAGEFNIVKWVES  849 (929)
Q Consensus       772 NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DV~s~g~~~~~~~~~~~~~~  849 (929)
                      ||+++.++.+||+|||.++.....        ......||+.|+|||++.+. .++. ++||||+|++++++.....++.
T Consensus       182 Nil~~~~~~~kl~dfg~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  253 (348)
T 2pml_X          182 NILMDKNGRVKLSDFGESEYMVDK--------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFS  253 (348)
T ss_dssp             GEEECTTSCEEECCCTTCEECBTT--------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             hEEEcCCCcEEEeccccccccccc--------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999999865321        22345789999999999887 5666 9999999987777655443332


Q ss_pred             cCCchhhhccChHHHHhhccc-chhh---------------hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          850 NLPENVLQVLDPELRQLMTSN-ESQT---------------IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~-~~~~---------------~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....      ..+....... ....               ......+...+.+++.+||+.||++|||++|+++
T Consensus       254 ~~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~  322 (348)
T 2pml_X          254 LKISL------VELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALK  322 (348)
T ss_dssp             CSSCS------HHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             CCCcH------HHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            22110      1111100000 0000               0000111222334777999999999999999986

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.96  E-value=6.8e-31  Score=290.92  Aligned_cols=234  Identities=17%  Similarity=0.152  Sum_probs=143.5

Q ss_pred             hCCCCCc-eeecccCceeEEeccccCc-----------HHHHHHHH-HHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHE-NLIGSGSFGSVLHNERTGS-----------WKSFIAEC-ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~-~~iG~G~~g~Vy~~~~~~~-----------~~~~~~E~-~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|... ++||+|+||.||+|++...           .....+|+ ..++.++||||+++++++.... .+....++||
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~~lv~  105 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPKARQEVDHHWQASGGPHIVCILDVYENMH-HGKRCLLIIM  105 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEEEEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHHHHHHHHHHHHhcCCCChHHHHHHHhhcc-CCCceEEEEE
Confidence            4678874 4699999999999976521           12333444 3466779999999999986532 2345589999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEeccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLL  793 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~  793 (929)
                      ||+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+++...
T Consensus       106 e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~  182 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT  182 (336)
T ss_dssp             ECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEeccccceecc
Confidence            9999999999986432          2367899999999998   9999999999999976   4569999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..        ......||+.|+|||++.+..++.++||||+|++++++.....++..... .........+...   ...
T Consensus       183 ~~--------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~---~~~  251 (336)
T 3fhr_A          183 QN--------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLG---QYG  251 (336)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC------------------------C
T ss_pred             cc--------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhcc---ccc
Confidence            21        12335789999999999888899999999999877765544433322211 1100001111100   000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........+...+.+++.+|++.||++|||++|+++
T Consensus       252 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~  287 (336)
T 3fhr_A          252 FPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMN  287 (336)
T ss_dssp             CCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             cCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence            000000111222334777999999999999999986

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.5e-29  Score=269.69  Aligned_cols=251  Identities=22%  Similarity=0.239  Sum_probs=178.5

Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      ..++.+++.++ .+|..+   +.+|++|+|++|.+++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            46667777776 455543   23677777777777777667777777777788877777776677777777778888877


Q ss_pred             Cc-CCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEec
Q 002376          411 NE-IPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS  489 (929)
Q Consensus       411 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs  489 (929)
                      |. ++...|..|..+++|++|++++|++++..|..|.++++|++|++++|++++..        +..+..+++|++|+|+
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP--------DDTFRDLGNLTHLFLH  161 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECC
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccC--------HhHhccCCCccEEECC
Confidence            76 66666777777777888888888777766777777777888888887776422        3346667778888888


Q ss_pred             CCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccC
Q 002376          490 DNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVV  569 (929)
Q Consensus       490 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  569 (929)
                      +|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++..
T Consensus       162 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~  241 (285)
T 1ozn_A          162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             CCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence            88777666666777888888888888888777777888888888888888887766666777888888888888877654


Q ss_pred             CCCCCCCCCCcccccCCCCCcCCC
Q 002376          570 PSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       570 p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      +.......++.+....|...|..|
T Consensus       242 ~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          242 RARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             GGHHHHHHHHHCCSEECCCBEEES
T ss_pred             CcHHHHHHHHhcccccCccccCCc
Confidence            432222233344445555555433

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.96  E-value=5.1e-30  Score=293.89  Aligned_cols=231  Identities=21%  Similarity=0.228  Sum_probs=154.7

Q ss_pred             CCCCceeecccCceeEEec-ccc-----------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEEEe
Q 002376          662 NFSHENLIGSGSFGSVLHN-ERT-----------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~-~~~-----------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      .|...+.||+|+||+||.+ ...           ...+.+.+|+++++++ +|||||++++++.+     ....|+||||
T Consensus        16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~~~~lv~E~   90 (434)
T 2rio_A           16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCDIALMEIKLLTESDDHPNVIRYYCSETT-----DRFLYIALEL   90 (434)
T ss_dssp             CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEEEECC
T ss_pred             eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCeEEEEEec
Confidence            3445688999999999643 222           1245678999999986 89999999999853     3458999999


Q ss_pred             cCCCCccccccccc---------------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC-------------Cc
Q 002376          729 LSNGSLGDWIHGER---------------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE-------------MT  780 (929)
Q Consensus       729 ~~~gsL~~~l~~~~---------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~-------------~~  780 (929)
                      |+ |+|.+++....               .++.||+.||+|||+.   +|+||||||+|||++.+             +.
T Consensus        91 ~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~  166 (434)
T 2rio_A           91 CN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLR  166 (434)
T ss_dssp             CS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCE
T ss_pred             CC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceE
Confidence            95 69999886321               2467999999999998   99999999999999754             48


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCC-------CCCCCCCCCCCCcCCCCCcch-hHHhhhcCC
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-------ERPSTAGDVPTSESFAGEFNI-VKWVESNLP  852 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~  852 (929)
                      +||+|||+++.+......  ........+||++|||||++.+       ..++.++||||+|++++++.. ...++....
T Consensus       167 ~kL~DFG~a~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~  244 (434)
T 2rio_A          167 ILISDFGLCKKLDSGQSS--FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKY  244 (434)
T ss_dssp             EEECCCTTCEECCC----------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTT
T ss_pred             EEEcccccceecCCCCcc--ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCch
Confidence            999999999876432111  0111234579999999999976       678999999999987777544 333322111


Q ss_pred             chhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          853 ENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       853 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....    ..+............. ...+...+.+++.+||+.||++|||+.||++
T Consensus       245 ~~~~----~i~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~Rps~~eil~  295 (434)
T 2rio_A          245 SRES----NIIRGIFSLDEMKCLH-DRSLIAEATDLISQMIDHDPLKRPTAMKVLR  295 (434)
T ss_dssp             THHH----HHHHTCCCCCCCTTCC-CHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhHH----HHhcCCCCcccccccc-cccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence            1100    0011110000000000 1122333344888999999999999999975

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.96  E-value=9.4e-31  Score=299.10  Aligned_cols=230  Identities=20%  Similarity=0.255  Sum_probs=155.5

Q ss_pred             hCCCCCceeecccCceeE-EeccccC-----------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHENLIGSGSFGSV-LHNERTG-----------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~V-y~~~~~~-----------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ..+|+..++||+|+||+| |++...+           ..+.+.+|+++++++ +|||||++++++.+     ....|+||
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-----~~~~~lv~   97 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYFCTEKD-----RQFQYIAI   97 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEEECHHHHHHHHHSCCCTTBCCEEEEEEE-----TTEEEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCEEEEEE
Confidence            346888899999999985 4443331           123467899999999 79999999999854     34589999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-----CCceEEecccccccc
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----EMTAKVGDFGLARFL  792 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-----~~~~ki~DfGla~~~  792 (929)
                      |||+ |+|.+++....         .++.||+.||+|||+.   +|+||||||+|||++.     ...+||+|||+|+..
T Consensus        98 E~~~-g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~  173 (432)
T 3p23_A           98 ELCA-ATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL  173 (432)
T ss_dssp             ECCS-EEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred             ECCC-CCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence            9996 69999886432         3467899999999998   9999999999999943     346889999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccC---CCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhc
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL---GERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      .....   ........+||++|||||++.   ...++.++||||+|++++++.. ...++.....       ........
T Consensus       174 ~~~~~---~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~-------~~~~~~~~  243 (432)
T 3p23_A          174 AVGRH---SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQ-------RQANILLG  243 (432)
T ss_dssp             ---------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTT-------HHHHHHTT
T ss_pred             cCCCc---ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhH-------HHHHHHhc
Confidence            43211   111234467999999999998   4567889999999987777544 3333321111       11111000


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ................+++++.+||+.||++|||++||++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~  283 (432)
T 3p23_A          244 ACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLK  283 (432)
T ss_dssp             CCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence            0000000011112233444888999999999999999983

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.96  E-value=1.2e-30  Score=291.38  Aligned_cols=236  Identities=22%  Similarity=0.247  Sum_probs=164.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCC-Ccc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSK-NME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~-~~~  720 (929)
                      .++|...+.||+|+||.||+|.+..                  ..+.+.+|+.++++++||||+++++++...+.. ...
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            3578889999999999999997541                  135688999999999999999999998654321 112


Q ss_pred             eEEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ..++||||++ |+|.+++...      ..++.|++.||+|||+.   +|+||||||+||++++++.+||+|||+++....
T Consensus       103 ~~~lv~e~~~-~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~  178 (353)
T 3coi_A          103 DFYLVMPFMQ-TDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLARHADA  178 (353)
T ss_dssp             CCEEEEECCS-EEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCTTC---
T ss_pred             eEEEEecccc-CCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccccCCCC
Confidence            3599999997 6898887532      23467999999999998   999999999999999999999999999986421


Q ss_pred             ccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhh--------------
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQ--------------  857 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~--------------  857 (929)
                               ......||+.|+|||++.+ ..++.++||||+|++++++.....++.....  ....              
T Consensus       179 ---------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~  249 (353)
T 3coi_A          179 ---------EMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ  249 (353)
T ss_dssp             --------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHT
T ss_pred             ---------CccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence                     1233578999999999887 6789999999999887776554443322111  0000              


Q ss_pred             -ccChHHHHhhc---ccchhh-hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 -VLDPELRQLMT---SNESQT-IQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 -~~~~~l~~~~~---~~~~~~-~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       +.+........   ...... ..........+.+++.+|++.||++|||++|+++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~  305 (353)
T 3coi_A          250 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT  305 (353)
T ss_dssp             TCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred             HHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence             00111110000   000000 0000111223334777999999999999999975

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=3.5e-28  Score=280.71  Aligned_cols=231  Identities=23%  Similarity=0.230  Sum_probs=203.2

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  407 (929)
                      +++++|+|++|++++..|..+..+. +|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            5678888888888877778888776 799999999999888888999999999999999999877777788899999999


Q ss_pred             ecCCcCCCCCcccccCCCCCceecccC-cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEE
Q 002376          408 LAGNEIPGGIPNSLANLKKLNQIDLSG-NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI  486 (929)
Q Consensus       408 L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~L  486 (929)
                      |++|+|++..+..|.++++|++|+|++ |.+....+..|.++++|+.|+|++|++++ +        | .+..+++|+.|
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~--------~-~~~~l~~L~~L  223 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M--------P-NLTPLVGLEEL  223 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C--------C-CCTTCTTCCEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c--------c-cccccccccEE
Confidence            999999877777899999999999998 55665555678999999999999999874 2        2 36678899999


Q ss_pred             EecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCc
Q 002376          487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       487 dLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      ||++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|||++|+|++..+..+..+++|+.|+|++|++.
T Consensus       224 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999888888999999999999999998


Q ss_pred             ccC
Q 002376          567 GVV  569 (929)
Q Consensus       567 ~~~  569 (929)
                      +..
T Consensus       304 CdC  306 (452)
T 3zyi_A          304 CDC  306 (452)
T ss_dssp             CST
T ss_pred             CCC
Confidence            753

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.96  E-value=1.5e-30  Score=288.56  Aligned_cols=170  Identities=25%  Similarity=0.359  Sum_probs=138.9

Q ss_pred             hCCCCCceeecccCceeEEecccc---C-------------cHHHHHHHHHHHHccCCcc------ccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT---G-------------SWKSFIAECETLRNVRHRN------LVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~---~-------------~~~~~~~E~~~l~~l~Hpn------iv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||.||+|.+.   +             ..+.+.+|+++++.++|++      ++++++++..    
T Consensus        13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~----   88 (339)
T 1z57_A           13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEH----   88 (339)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEE----
T ss_pred             cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeeccccc----
Confidence            358899999999999999998652   1             1356889999999987765      9999999854    


Q ss_pred             CcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC----------
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE----------  777 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~----------  777 (929)
                       ....++||||+ +++|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.          
T Consensus        89 -~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~  163 (339)
T 1z57_A           89 -HGHICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPK  163 (339)
T ss_dssp             -TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC--
T ss_pred             -CCcEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCc
Confidence             33589999999 889999886432          2367899999999998   9999999999999987          


Q ss_pred             ---------CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          778 ---------EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       778 ---------~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                               ++.+||+|||+++....         ......||+.|+|||++.+..++.++||||+|++++++.....+
T Consensus       164 ~~~~~~~~~~~~~kl~Dfg~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p  233 (339)
T 1z57_A          164 IKRDERTLINPDIKVVDFGSATYDDE---------HHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTV  233 (339)
T ss_dssp             --CEEEEESCCCEEECCCSSCEETTS---------CCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             cccccccccCCCceEeeCcccccCcc---------ccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence                     67899999999986421         12234789999999999999999999999999887776554433

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.96  E-value=7.5e-31  Score=295.25  Aligned_cols=176  Identities=22%  Similarity=0.318  Sum_probs=141.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccC-----------Cccccceeeeccc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVR-----------HRNLVKLITSCSS  713 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~-----------Hpniv~l~~~~~~  713 (929)
                      .++|...+.||+|+||.||+|++..               ..+.+.+|+.++++++           ||||+++++++..
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            3579999999999999999998541               2456889999999886           8999999999865


Q ss_pred             CCCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec------C
Q 002376          714 LDSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD------E  777 (929)
Q Consensus       714 ~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~------~  777 (929)
                      .+ ......++||||+ +++|.+++....          .++.||+.||+|||+.+  +|+||||||+|||++      .
T Consensus        98 ~~-~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~~  173 (373)
T 1q8y_A           98 KG-PNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPEN  173 (373)
T ss_dssp             EE-TTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTT
T ss_pred             cC-CCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCcC
Confidence            43 2234689999999 899999886422          23678999999999853  799999999999994      4


Q ss_pred             CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          778 EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       778 ~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .+.+||+|||+++.....         .....||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       174 ~~~~kl~Dfg~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf  235 (373)
T 1q8y_A          174 LIQIKIADLGNACWYDEH---------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLF  235 (373)
T ss_dssp             EEEEEECCCTTCEETTBC---------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cceEEEcccccccccCCC---------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCC
Confidence            458999999999865321         22347899999999999999999999999998887766554443

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.96  E-value=4.5e-31  Score=297.90  Aligned_cols=179  Identities=28%  Similarity=0.309  Sum_probs=141.6

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccC-Cc-----cccceeeecc
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVR-HR-----NLVKLITSCS  712 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~-Hp-----niv~l~~~~~  712 (929)
                      ++-....++|+..+.||+|+||+||+|+...               ..+++.+|+++++.++ |+     +|+++++++.
T Consensus        47 ~~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~  126 (382)
T 2vx3_A           47 KNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM  126 (382)
T ss_dssp             CTTCEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE
T ss_pred             ecCCEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec
Confidence            3344557899999999999999999997541               1356778888888885 44     4999999885


Q ss_pred             cCCCCCcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec--CCCc
Q 002376          713 SLDSKNMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD--EEMT  780 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~--~~~~  780 (929)
                      ..     ...++||||++ |+|.+++....          .++.|++.||+|||++ ..+|+||||||+|||++  .++.
T Consensus       127 ~~-----~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~  199 (382)
T 2vx3_A          127 FR-----NHLCLVFEMLS-YNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSA  199 (382)
T ss_dssp             ET-----TEEEEEEECCC-CBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCC
T ss_pred             cC-----CceEEEEecCC-CCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCc
Confidence            43     35899999996 59999886432          3467899999999953 23899999999999994  5788


Q ss_pred             eEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          781 AKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       781 ~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      +||+|||+|+.....         .....||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       200 ~kL~DFG~a~~~~~~---------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf  258 (382)
T 2vx3_A          200 IKIVDFGSSCQLGQR---------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF  258 (382)
T ss_dssp             EEECCCTTCEETTCC---------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             EEEEeccCceecccc---------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence            999999999865321         22357899999999999999999999999998888776655444

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=5.9e-28  Score=277.80  Aligned_cols=230  Identities=24%  Similarity=0.242  Sum_probs=190.6

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  407 (929)
                      +++++|+|++|++++..+..+..+. +|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            4566777777777766666666665 688888888888777777788888888888888888866666788888888888


Q ss_pred             ecCCcCCCCCcccccCCCCCceecccC-cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEE
Q 002376          408 LAGNEIPGGIPNSLANLKKLNQIDLSG-NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI  486 (929)
Q Consensus       408 L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~L  486 (929)
                      |++|+|++..+..|.++++|++|+|++ |.++...+..|.++++|+.|+|++|+++ .+        | .+..+++|+.|
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~--------~-~~~~l~~L~~L  212 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI--------P-NLTPLIKLDEL  212 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SC--------C-CCTTCSSCCEE
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cc--------c-ccCCCcccCEE
Confidence            888888877777888888888888888 4455455557888889999999999887 33        3 36678899999


Q ss_pred             EecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCc
Q 002376          487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       487 dLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      ||++|++++..|..|.++++|+.|+|++|+|++..+..|..+++|+.|||++|+|++..+..|..+++|+.|+|++|++.
T Consensus       213 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          213 DLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            99999999888999999999999999999999999999999999999999999999888888899999999999999998


Q ss_pred             cc
Q 002376          567 GV  568 (929)
Q Consensus       567 ~~  568 (929)
                      +.
T Consensus       293 Cd  294 (440)
T 3zyj_A          293 CN  294 (440)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.95  E-value=1.1e-29  Score=274.75  Aligned_cols=227  Identities=23%  Similarity=0.287  Sum_probs=164.1

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|+..                  ...+.+.+|++++++++||||+++++++...     ..
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~   95 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDS-----SS   95 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----SE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCC-----Ce
Confidence            457899999999999999998754                  1356789999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC---CceEEecccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE---MTAKVGDFGLAR  790 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~---~~~ki~DfGla~  790 (929)
                      .++||||+++++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++.+   +.+||+|||+++
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~  172 (287)
T 2wei_A           96 FYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST  172 (287)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred             EEEEEEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence            899999999999988875322        3467899999999998   99999999999999754   479999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .....       .......||+.|+|||++.+ .++.++||||+|++++++.....++.....  .++.. .+..   ..
T Consensus       173 ~~~~~-------~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~--~~~~~-~~~~---~~  238 (287)
T 2wei_A          173 CFQQN-------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE--YDILK-RVET---GK  238 (287)
T ss_dssp             TBCCC-------SSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHH-HHHH---CC
T ss_pred             eecCC-------CccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH--HHHHH-HHHc---CC
Confidence            65321       11223468999999999876 489999999999776665443333221111  11111 1111   00


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..........++..+.+++.+|++.||++|||++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~  276 (287)
T 2wei_A          239 YAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLE  276 (287)
T ss_dssp             CCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence            00000011111222333777999999999999999986

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.95  E-value=7.9e-31  Score=287.60  Aligned_cols=237  Identities=22%  Similarity=0.312  Sum_probs=162.5

Q ss_pred             CChHHHHHhhCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccC--Cccccceeeec
Q 002376          651 ISYDELRRATGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVR--HRNLVKLITSC  711 (929)
Q Consensus       651 ~~~~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~--Hpniv~l~~~~  711 (929)
                      +.++.+....++|+..+.||+|+||.||++....                 ..+.+.+|++++++++  ||||+++++++
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   97 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   97 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence            3444444556789999999999999999986541                 2357889999999997  59999999998


Q ss_pred             ccCCCCCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEE
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKV  783 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki  783 (929)
                      ...     ...++||| +.+|+|.+++....        .++.|++.||+|||+.   +|+||||||+||++++ +.+||
T Consensus        98 ~~~-----~~~~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL  167 (313)
T 3cek_A           98 ITD-----QYIYMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKL  167 (313)
T ss_dssp             ECS-----SEEEEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEE
T ss_pred             ecC-----CEEEEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEE
Confidence            543     35899999 55889999986433        2367899999999998   9999999999999975 89999


Q ss_pred             eccccccccccccCCCCCccccceeccccccccccccCC-----------CCCCCCCCCCCCcCCCCCcchhHHhhhcCC
Q 002376          784 GDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-----------ERPSTAGDVPTSESFAGEFNIVKWVESNLP  852 (929)
Q Consensus       784 ~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~  852 (929)
                      +|||+++.......    ........||+.|+|||++.+           ..++.++||||+|++++++.....++....
T Consensus       168 ~Dfg~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  243 (313)
T 3cek_A          168 IDFGIANQMQPDTT----SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  243 (313)
T ss_dssp             CCCSSSCC------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             eeccccccccCccc----cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH
Confidence            99999986632211    111234579999999999876           478999999999987777654444333221


Q ss_pred             chhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          853 ENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       853 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....     .+.........  ...+......+.+++.+||+.||++||+++|+++
T Consensus       244 ~~~~-----~~~~~~~~~~~--~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  292 (313)
T 3cek_A          244 NQIS-----KLHAIIDPNHE--IEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLA  292 (313)
T ss_dssp             SHHH-----HHHHHHCTTSC--CCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             HHHH-----HHHHHHhcccc--cCCcccchHHHHHHHHHHccCCcccCcCHHHHhc
Confidence            1110     11111110000  0000011122233777999999999999999985

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.95  E-value=5.7e-30  Score=301.38  Aligned_cols=238  Identities=21%  Similarity=0.216  Sum_probs=163.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|.+..                 ..+.+.+|++++++++||||+++++++..... .....
T Consensus        13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred             CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence            3689999999999999999987641                 24568899999999999999999999755221 12345


Q ss_pred             EEEEEEecCCCCccccccccc-----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCc---eEEeccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMT---AKVGDFG  787 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~---~ki~DfG  787 (929)
                      .++||||+++|+|.+++....           .++.+++.||+|||+.   +|+||||||+||+++.++.   +||+|||
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG  169 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG  169 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence            799999999999999986432           2367899999999998   9999999999999997664   9999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhc-------
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQV-------  858 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~-------  858 (929)
                      +++.....       .......||+.|+|||++.+..++.++||||+|++++++..+..++.....  .+...       
T Consensus       170 ~a~~~~~~-------~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~  242 (676)
T 3qa8_A          170 YAKELDQG-------ELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNE  242 (676)
T ss_dssp             CCCBTTSC-------CCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC-----
T ss_pred             cccccccc-------cccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccch
Confidence            99865321       112345799999999999999999999999999887776555444322110  00000       


Q ss_pred             ---cChHHHHhh--cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHH
Q 002376          859 ---LDPELRQLM--TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREAL  907 (929)
Q Consensus       859 ---~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~  907 (929)
                         ......+..  .............+...+.+++.+|++.||++|||++|++
T Consensus       243 ~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL  296 (676)
T 3qa8_A          243 HIVVYDDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNP  296 (676)
T ss_dssp             -CCSCCCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCC
T ss_pred             hhhhhhhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHh
Confidence               000000000  0000000011122333444588899999999999998843

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.95  E-value=4.7e-30  Score=286.53  Aligned_cols=171  Identities=22%  Similarity=0.315  Sum_probs=137.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCcc------ccceeeecccCCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRN------LVKLITSCSSLDSK  717 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpn------iv~l~~~~~~~~~~  717 (929)
                      .++|+..+.||+|+||+||+|....                ..+.+.+|+.++++++|++      ++.+.+++..    
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~----   93 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF----   93 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE----
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee----
Confidence            3689999999999999999986531                1356788999999998776      8888888744    


Q ss_pred             CcceEEEEEEecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeee------------
Q 002376          718 NMEFLALVYEFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILL------------  775 (929)
Q Consensus       718 ~~~~~~lV~e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl------------  775 (929)
                       ....++||||+ +|++.+++....          .++.|++.||+|||+.   +|+||||||+|||+            
T Consensus        94 -~~~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~  168 (355)
T 2eu9_A           94 -HGHMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEH  168 (355)
T ss_dssp             -TTEEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC
T ss_pred             -CCeEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeccccccccccc
Confidence             33589999999 667777665322          3467999999999998   99999999999999            


Q ss_pred             -------cCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          776 -------DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       776 -------~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                             +.++.+||+|||+++....         ......||+.|+|||++.+..++.++||||+|++++++.....++
T Consensus       169 ~~~~~~~~~~~~~kl~Dfg~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf  239 (355)
T 2eu9_A          169 KSCEEKSVKNTSIRVADFGSATFDHE---------HHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLF  239 (355)
T ss_dssp             -CCCEEEESCCCEEECCCTTCEETTS---------CCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ccccccccCCCcEEEeecCccccccc---------cccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCC
Confidence                   5678999999999986421         122347999999999999999999999999998877765544333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.95  E-value=9.5e-30  Score=278.63  Aligned_cols=250  Identities=21%  Similarity=0.247  Sum_probs=215.6

Q ss_pred             cCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCcc-ccccCCCCC-------CCCcccEEEeeCCCCCcccCc
Q 002376          324 LTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHI-YGKIPASIG-------RLRSLTLLDLSYNSISGEIPI  395 (929)
Q Consensus       324 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~  395 (929)
                      ++..++|++|++++|.+  .+|..+..   .|+.|+|++|++ .+.+|..+.       ++++|++|+|++|++++.+|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            45567889999999999  78887765   389999999999 455666655       789999999999999999998


Q ss_pred             cc--cCCCCCCEEEecCCcCCCCCcccccCC-----CCCceecccCcccccccCcccccccccceecccCCcCCCCCCCC
Q 002376          396 EI--GQLQGLQVLGLAGNEIPGGIPNSLANL-----KKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKG  468 (929)
Q Consensus       396 ~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~  468 (929)
                      .+  ..+++|++|+|++|++++. |..+..+     ++|++|+|++|++++..|..|+++++|++|+|++|++.|.++  
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--  190 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG--  190 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH--
T ss_pred             HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH--
Confidence            87  8999999999999999987 8888877     999999999999999888999999999999999999876431  


Q ss_pred             cccCCchhh--hcccCccEEEecCCCCCCC--CC-cchhcCcCcceeecccccccccCC-ccccCCCCCCEEECCCCcCC
Q 002376          469 ILRPLPEEI--SRLENVVTIDLSDNSLSGN--LP-NSLKNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       469 ~~~~~p~~~--~~l~~L~~LdLs~N~l~~~--~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~  542 (929)
                          +|..+  ..+++|++|+|++|++++.  ++ ..+.++++|++|+|++|+|++.+| ..+..+++|++|+|++|+|+
T Consensus       191 ----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          191 ----LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK  266 (312)
T ss_dssp             ----HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             ----HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence                13444  7889999999999999842  22 345688999999999999999875 56777999999999999999


Q ss_pred             CcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCC
Q 002376          543 GSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL  589 (929)
Q Consensus       543 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~  589 (929)
                       .+|..+.  ++|++|||++|++++. |....+++++.+++++|+..
T Consensus       267 -~ip~~~~--~~L~~L~Ls~N~l~~~-p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          267 -QVPKGLP--AKLSVLDLSYNRLDRN-PSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             -SCCSSCC--SEEEEEECCSSCCCSC-CCTTTSCEEEEEECTTCTTT
T ss_pred             -hhhhhcc--CCceEEECCCCCCCCC-hhHhhCCCCCEEeccCCCCC
Confidence             7888776  8999999999999998 65667889999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.95  E-value=7.7e-30  Score=309.27  Aligned_cols=227  Identities=22%  Similarity=0.266  Sum_probs=164.4

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|++..                  ..+.|.+|++++++++|||||++++++...+..+...
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            3689999999999999999986531                  1346789999999999999999999997655433444


Q ss_pred             EEEEEEecCCCCcccccccc------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGE------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      .|+||||+++++|.+++...      ..++.||+.||+|||+.   +||||||||+|||++++ .+||+|||+++.... 
T Consensus       159 ~~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~-  233 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS-  233 (681)
T ss_dssp             EEEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCEETTC-
T ss_pred             eEEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccchhccc-
Confidence            79999999999999987542      23467999999999998   99999999999999986 899999999986531 


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                               .....||++|||||++.++. +.++||||+|++++++..     +..+... ...+ .+    ... ....
T Consensus       234 ---------~~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~-----g~~~~~~-~~~~-~~----~~~-~~~~  291 (681)
T 2pzi_A          234 ---------FGYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTL-----DLPTRNG-RYVD-GL----PED-DPVL  291 (681)
T ss_dssp             ---------CSCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHS-----CCCEETT-EECS-SC----CTT-CHHH
T ss_pred             ---------CCccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHh-----CCCCCcc-cccc-cc----ccc-cccc
Confidence                     13357999999999987654 899999999987666432     2222110 0000 00    000 0000


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHhhHHHH
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRI-GIREALRRLKSSQEIL  917 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~ev~~~L~~~~~~~  917 (929)
                      .    ....+.+++.+||+.||++|| +++++...+..+.+..
T Consensus       292 ~----~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~~  330 (681)
T 2pzi_A          292 K----TYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLREV  330 (681)
T ss_dssp             H----HCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHHH
T ss_pred             c----cCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHHh
Confidence            0    112223377799999999999 5677777787776543

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.95  E-value=1.7e-30  Score=286.82  Aligned_cols=229  Identities=20%  Similarity=0.226  Sum_probs=141.1

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHH-HHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECE-TLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~-~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|....                 ..+++.+|+. +++.++||||+++++++...     ..
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~-----~~   95 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE-----GD   95 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS-----SE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC-----Cc
Confidence            4678889999999999999987651                 1234556666 67778999999999998653     34


Q ss_pred             EEEEEEecCCCCccccccc-------------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          722 LALVYEFLSNGSLGDWIHG-------------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~-------------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      .++||||+++ +|.+++..             ...++.+++.||+|||+.  .+|+||||||+||+++.++.+||+|||+
T Consensus        96 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~dlkp~NIll~~~~~~kl~Dfg~  172 (327)
T 3aln_A           96 CWICMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKEN--LKIIHRDIKPSNILLDRSGNIKLCDFGI  172 (327)
T ss_dssp             EEEEECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCSCCCGGGEEEETTTEEEECCCSS
T ss_pred             eEEEEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeECCCCHHHEEEcCCCCEEEccCCC
Confidence            8999999974 77766641             113367899999999985  2799999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceecccccccccccc----CCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHH
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYG----LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELR  864 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  864 (929)
                      ++.....       .......||+.|+|||++    .+..++.++||||+|++++++.....++...... .+.+.....
T Consensus       173 ~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~  244 (327)
T 3aln_A          173 SGQLVDS-------IAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSV-FDQLTQVVK  244 (327)
T ss_dssp             SCC-------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC--------CCCCC
T ss_pred             ceecccc-------cccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH-HHHHHHHhc
Confidence            9865321       112234799999999998    4667899999999998777765544433222110 011111000


Q ss_pred             Hhhcccc-hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          865 QLMTSNE-SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       865 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ....... ......++    .+.+++.+||+.||++||+++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~----~l~~li~~~l~~dp~~Rps~~ell~  285 (327)
T 3aln_A          245 GDPPQLSNSEEREFSP----SFINFVNLCLTKDESKRPKYKELLK  285 (327)
T ss_dssp             SCCCCCCCCSSCCCCH----HHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             CCCCCCCCcccccCCH----HHHHHHHHHhhCChhhCcCHHHHHh
Confidence            0000000 00001112    2233777999999999999999964

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.95  E-value=4.9e-28  Score=261.53  Aligned_cols=235  Identities=21%  Similarity=0.238  Sum_probs=191.6

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCC-CCcccCccccCCCCCCEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS-ISGEIPIEIGQLQGLQVL  406 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L  406 (929)
                      ++|++|+|++|++++..+..+..+. +|++|+|++|.+++..|..|.++++|++|+|++|. ++...|..|..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            5777888888888766666677766 78888888888888888888888888999998887 776668888888889999


Q ss_pred             EecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEE
Q 002376          407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI  486 (929)
Q Consensus       407 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~L  486 (929)
                      ++++|++++..|..|.++++|++|++++|++++..+..|.++++|++|+|++|++++ ++       +..+..+++|+.|
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~-------~~~~~~l~~L~~L  182 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP-------ERAFRGLHSLDRL  182 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC-------TTTTTTCTTCCEE
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC-------HHHhcCccccCEE
Confidence            999998888888888888899999999999887777778888899999999998874 22       3356778889999


Q ss_pred             EecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCc
Q 002376          487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       487 dLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      +|++|++++..|..|.++++|+.|++++|++++.++..+..+++|+.|+|++|.+....+.. .-...++.+..+.|.+.
T Consensus       183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~  261 (285)
T 1ozn_A          183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVP  261 (285)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCB
T ss_pred             ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccc
Confidence            99999999888899999999999999999999887788999999999999999998654321 11233555667788888


Q ss_pred             ccCCCC
Q 002376          567 GVVPSE  572 (929)
Q Consensus       567 ~~~p~~  572 (929)
                      +..|..
T Consensus       262 c~~p~~  267 (285)
T 1ozn_A          262 CSLPQR  267 (285)
T ss_dssp             EEESGG
T ss_pred             cCCchH
Confidence            888864

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.95  E-value=1.9e-30  Score=285.38  Aligned_cols=220  Identities=22%  Similarity=0.240  Sum_probs=162.9

Q ss_pred             HHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccC--Cccccceeeecc
Q 002376          657 RRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVR--HRNLVKLITSCS  712 (929)
Q Consensus       657 ~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~--Hpniv~l~~~~~  712 (929)
                      ....++|+..+.||+|+||.||+|+...                      ..+.+.+|+.++++++  ||||+++++++.
T Consensus        39 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~  118 (320)
T 3a99_A           39 EPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFE  118 (320)
T ss_dssp             -CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEE
T ss_pred             CCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEe
Confidence            3445689999999999999999987541                      1134668999999996  599999999995


Q ss_pred             cCCCCCcceEEEEEEecCC-CCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceE
Q 002376          713 SLDSKNMEFLALVYEFLSN-GSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAK  782 (929)
Q Consensus       713 ~~~~~~~~~~~lV~e~~~~-gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~k  782 (929)
                      ..     ...++||||+.+ ++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++ +++.+|
T Consensus       119 ~~-----~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~k  190 (320)
T 3a99_A          119 RP-----DSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELK  190 (320)
T ss_dssp             CS-----SEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEE
T ss_pred             cC-----CcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEE
Confidence            43     348999999976 89999886432        3467999999999998   999999999999999 789999


Q ss_pred             EeccccccccccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccCh
Q 002376          783 VGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDP  861 (929)
Q Consensus       783 i~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~  861 (929)
                      |+|||+++.....        ......||+.|+|||++.+..+ +.++||||+|++++++..     +..|.....   .
T Consensus       191 L~Dfg~~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~-----g~~pf~~~~---~  254 (320)
T 3a99_A          191 LIDFGSGALLKDT--------VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVC-----GDIPFEHDE---E  254 (320)
T ss_dssp             ECCCTTCEECCSS--------CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-----SSCSCCSHH---H
T ss_pred             EeeCccccccccc--------cccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHH-----CCCCCCChh---h
Confidence            9999999865321        1223479999999999887765 788999999977666543     433331100   0


Q ss_pred             HHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       862 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .....    .......++    .+.+++.+||+.||++|||++|+++
T Consensus       255 ~~~~~----~~~~~~~~~----~~~~li~~~l~~dp~~Rps~~~ll~  293 (320)
T 3a99_A          255 IIRGQ----VFFRQRVSS----ECQHLIRWCLALRPSDRPTFEEIQN  293 (320)
T ss_dssp             HHHCC----CCCSSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             hhccc----ccccccCCH----HHHHHHHHHccCChhhCcCHHHHhc
Confidence            01110    000111112    2233777999999999999999986

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.95  E-value=4.5e-30  Score=281.38  Aligned_cols=222  Identities=23%  Similarity=0.281  Sum_probs=157.6

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHcc----CCcccccee
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNV----RHRNLVKLI  708 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l----~Hpniv~l~  708 (929)
                      +.....++|+..+.||+|+||.||+|+...                      ....+.+|+.++.++    +||||++++
T Consensus        25 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~  104 (312)
T 2iwi_A           25 DREAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLL  104 (312)
T ss_dssp             --------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEE
T ss_pred             chhhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEE
Confidence            344456789999999999999999997641                      112355799999998    899999999


Q ss_pred             eecccCCCCCcceEEEEEEe-cCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CC
Q 002376          709 TSCSSLDSKNMEFLALVYEF-LSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EE  778 (929)
Q Consensus       709 ~~~~~~~~~~~~~~~lV~e~-~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~  778 (929)
                      +++...     ...++|||| +++++|.+++....        .++.|++.||+|||+.   +|+||||||+||+++ ++
T Consensus       105 ~~~~~~-----~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~  176 (312)
T 2iwi_A          105 DWFETQ-----EGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRR  176 (312)
T ss_dssp             EEC----------CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTT
T ss_pred             EEEecC-----CeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCC
Confidence            998543     347999999 78999999986432        3467899999999998   999999999999999 88


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhh
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQ  857 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~  857 (929)
                      +.+||+|||+++.....        ......||+.|+|||++.+..+ +.++||||+|++++++..     +..+....+
T Consensus       177 ~~~kl~dfg~~~~~~~~--------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~-----g~~pf~~~~  243 (312)
T 2iwi_A          177 GCAKLIDFGSGALLHDE--------PYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVC-----GDIPFERDQ  243 (312)
T ss_dssp             TEEEECCCSSCEECCSS--------CBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHH-----SSCSCCSHH
T ss_pred             CeEEEEEcchhhhcccC--------cccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHH-----CCCCCCChH
Confidence            99999999999865321        1233568999999999887766 458999999977666544     333331100


Q ss_pred             ccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       858 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          .....   ........    ...+.+++.+||+.||++|||++|+++
T Consensus       244 ----~~~~~---~~~~~~~~----~~~~~~li~~~l~~~p~~Rps~~e~l~  283 (312)
T 2iwi_A          244 ----EILEA---ELHFPAHV----SPDCCALIRRCLAPKPSSRPSLEEILL  283 (312)
T ss_dssp             ----HHHHT---CCCCCTTS----CHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ----HHhhh---ccCCcccC----CHHHHHHHHHHccCChhhCcCHHHHhc
Confidence                11110   00000111    122233777999999999999999987

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.95  E-value=2.4e-29  Score=276.25  Aligned_cols=228  Identities=20%  Similarity=0.215  Sum_probs=142.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------c-HHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------S-WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~-~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||.||+|+...                 . .+.+..+..+++.++||||+++++++...     ..
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~   98 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN-----TD   98 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----SE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC-----Cc
Confidence            4578889999999999999987641                 1 12334455578888999999999998643     34


Q ss_pred             EEEEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .++||||+ ++.+..+...         ...++.+++.||+|||+.+  +|+||||||+||+++.++.+||+|||+++..
T Consensus        99 ~~lv~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~  175 (318)
T 2dyl_A           99 VFIAMELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKH--GVIHRDVKPSNILLDERGQIKLCDFGISGRL  175 (318)
T ss_dssp             EEEEECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCGGGEEECTTSCEEECCCTTC---
T ss_pred             EEEEEecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhC--CEEeCCCCHHHEEECCCCCEEEEECCCchhc
Confidence            89999999 4444443321         1134678999999999831  8999999999999999999999999999765


Q ss_pred             ccccCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM  867 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  867 (929)
                      ...       .......||+.|+|||++.     +..++.++||||+|++++++.....++...... .+.+....... 
T Consensus       176 ~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~-  246 (318)
T 2dyl_A          176 VDD-------KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD-FEVLTKVLQEE-  246 (318)
T ss_dssp             ------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH-HHHHHHHHHSC-
T ss_pred             cCC-------ccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc-HHHHHHHhccC-
Confidence            321       1123347899999999984     556899999999998777765544443322111 11111111110 


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..........+..    +.+++.+||+.||++||+++|+++
T Consensus       247 ~~~~~~~~~~~~~----l~~li~~~l~~dp~~Rps~~~ll~  283 (318)
T 2dyl_A          247 PPLLPGHMGFSGD----FQSFVKDCLTKDHRKRPKYNKLLE  283 (318)
T ss_dssp             CCCCCSSSCCCHH----HHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred             CCCCCccCCCCHH----HHHHHHHHccCChhHCcCHHHHhh
Confidence            0000000011122    223777999999999999999975

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=7.5e-29  Score=272.13  Aligned_cols=270  Identities=18%  Similarity=0.154  Sum_probs=208.6

Q ss_pred             CcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecc
Q 002376           71 NRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL  150 (929)
Q Consensus        71 ~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  150 (929)
                      .+....+++.+.+...+...+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|  |..+++|++|+|
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L   87 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL   87 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence            356667788888776555566678899999999999998888899999999999999999997665  899999999999


Q ss_pred             cccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEE
Q 002376          151 MANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLR  230 (929)
Q Consensus       151 s~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  230 (929)
                      ++|++++      +...++|++|++++|++++..+           ..+++|+.|+|++|++++..+..|..+++|++|+
T Consensus        88 s~n~l~~------l~~~~~L~~L~l~~n~l~~~~~-----------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           88 NNNYVQE------LLVGPSIETLHAANNNISRVSC-----------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             CSSEEEE------EEECTTCCEEECCSSCCSEEEE-----------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred             cCCcccc------ccCCCCcCEEECCCCccCCcCc-----------cccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence            9999983      3455899999999998865322           2357899999999999998888999999999999


Q ss_pred             eeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecccccccc
Q 002376          231 LASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIV  310 (929)
Q Consensus       231 Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~  310 (929)
                      |++|++++..+..+...+++|++|++++|++++..+  ...+++|+.|+|++|+|++. |..|..+++|+.|++++|+|.
T Consensus       151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC
T ss_pred             CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc
Confidence            999999876666666568888888888888876622  23478888888888888854 444777777777777777776


Q ss_pred             CCCCCCCCccccccCCCCCCCEEEccCCccc-cccCchhhhccccccEEEec-CCccccccCC
Q 002376          311 SSGDDEGLSFITSLTNSTHLNYLALDGNQFE-GKIPESIGNFSNELSKLYLG-GNHIYGKIPA  371 (929)
Q Consensus       311 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~~~~~L~~L~Ls-~N~l~~~~p~  371 (929)
                      .++        ..+..+++|++|+|++|.+. +.+|..+..++ .|+.|+++ .+.++|..|.
T Consensus       228 ~l~--------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~-~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          228 LIE--------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ-RVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             EEC--------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH-HHHHHHHHHHHHHHSSSSC
T ss_pred             chh--------hHhhcCCCCCEEEccCCCccCcCHHHHHhccc-cceEEECCCchhccCCchh
Confidence            543        24556677777777777776 55666666655 57777776 3345554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.95  E-value=4.9e-29  Score=273.59  Aligned_cols=246  Identities=22%  Similarity=0.220  Sum_probs=129.8

Q ss_pred             CCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCC
Q 002376          248 LPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNS  327 (929)
Q Consensus       248 l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l  327 (929)
                      +++|++|++++|++++..|..|.++++|+.|+|++|.+++..+  |..+++|++|++++|++..++            ..
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~------------~~   98 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------------VG   98 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE------------EC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc------------CC
Confidence            3344444444444444444555555666666666666654433  444444555444444443211            12


Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  407 (929)
                      ++                         |++|++++|++++..+..   +++|++|+|++|++++..+..+..+++|++|+
T Consensus        99 ~~-------------------------L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           99 PS-------------------------IETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             TT-------------------------CCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred             CC-------------------------cCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence            34                         444444444444433332   34455555555555554455555555555555


Q ss_pred             ecCCcCCCCCccccc-CCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEE
Q 002376          408 LAGNEIPGGIPNSLA-NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI  486 (929)
Q Consensus       408 L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~L  486 (929)
                      |++|++++..+..+. .+++|++|+|++|++++..+  ...+++|++|+|++|+|++ +        |..+..+++|+.|
T Consensus       151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l--------~~~~~~l~~L~~L  219 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-M--------GPEFQSAAGVTWI  219 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-E--------CGGGGGGTTCSEE
T ss_pred             CCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-c--------hhhhcccCcccEE
Confidence            555555554444442 45555666666665554321  1235566666666666553 1        3345555666666


Q ss_pred             EecCCCCCCCCCcchhcCcCcceeeccccccc-ccCCccccCCCCCCEEECCC-CcCCCcCCc
Q 002376          487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFS-GPIPNIVAELKGLEVLDLSS-NKLSGSIPS  547 (929)
Q Consensus       487 dLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~  547 (929)
                      ||++|+++ .+|..+..+++|+.|++++|.++ +.+|..+..+++|+.|++++ +.++|..|.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            66666666 34555666666666666666666 55666666666666666663 345554443

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.95  E-value=4.6e-29  Score=276.45  Aligned_cols=161  Identities=19%  Similarity=0.195  Sum_probs=126.5

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccC-----------------
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVR-----------------  700 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~-----------------  700 (929)
                      .++|+..+.||+|+||+||+|++.+                      ..+.+.+|+++++.++                 
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             cccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            3568889999999999999987642                      1277899999999886                 


Q ss_pred             ---------CccccceeeecccCCC--------CCcceEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhh
Q 002376          701 ---------HRNLVKLITSCSSLDS--------KNMEFLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLH  756 (929)
Q Consensus       701 ---------Hpniv~l~~~~~~~~~--------~~~~~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH  756 (929)
                               |||||++++++.+...        ......|+||||+++|++.+.+.+.       +.++.||+.||+|||
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH  178 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAE  178 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                     5555555555543100        0144689999999999777666432       234679999999999


Q ss_pred             -hCCCCCEEecCCCCCCeeecCCC--------------------ceEEeccccccccccccCCCCCccccceeccccccc
Q 002376          757 -NDCEVPVVHSDLKPGNILLDEEM--------------------TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV  815 (929)
Q Consensus       757 -~~~~~~iiHrDlk~~NILl~~~~--------------------~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~  815 (929)
                       +.   +|+||||||+|||++.++                    .+||+|||+|+....           ...+||+.||
T Consensus       179 ~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~-----------~~~~gt~~y~  244 (336)
T 2vuw_A          179 ASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD-----------GIVVFCDVSM  244 (336)
T ss_dssp             HHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET-----------TEEECCCCTT
T ss_pred             HhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC-----------CcEEEeeccc
Confidence             77   999999999999999887                    899999999986531           1347999999


Q ss_pred             cccccCCCCCCCCCCCCCCc
Q 002376          816 PPEYGLGERPSTAGDVPTSE  835 (929)
Q Consensus       816 aPE~~~~~~~~~~~DV~s~g  835 (929)
                      |||++.+.. +.++||||++
T Consensus       245 aPE~~~g~~-~~~~Diwsl~  263 (336)
T 2vuw_A          245 DEDLFTGDG-DYQFDIYRLM  263 (336)
T ss_dssp             CSGGGCCCS-SHHHHHHHHH
T ss_pred             ChhhhcCCC-ccceehhhhh
Confidence            999998776 8999999974

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.95  E-value=2.5e-29  Score=271.36  Aligned_cols=213  Identities=11%  Similarity=0.089  Sum_probs=153.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||.||+|++..                   ..+.|.+|+..+++++||||+++++++...     ..
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-----~~  105 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR-----AG  105 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC-----Cc
Confidence            579999999999999999987651                   126789999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCccccccccc------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      .|+||||+++++|.++++...      .++.|++.||+|||+.   +|+||||||+|||+++++.+||+++|        
T Consensus       106 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~--------  174 (286)
T 3uqc_A          106 GLVVAEWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA--------  174 (286)
T ss_dssp             EEEEEECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred             EEEEEEecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence            899999999999999986432      3467899999999998   99999999999999999999987443        


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccchhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  874 (929)
                                        |++|       ++.++||||+|+++|++.....++..... .....................
T Consensus       175 ------------------~~~~-------~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (286)
T 3uqc_A          175 ------------------TMPD-------ANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADID  229 (286)
T ss_dssp             ------------------CCTT-------CCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHC
T ss_pred             ------------------ccCC-------CCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcc
Confidence                              4443       68899999999887776665554432221 000000011111000000001


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhh
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLK  919 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~  919 (929)
                      ..    +...+++++.+||+.||++| |++|+++.|+++......
T Consensus       230 ~~----~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~~  269 (286)
T 3uqc_A          230 RD----IPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVADR  269 (286)
T ss_dssp             TT----SCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC----
T ss_pred             cC----CCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCCc
Confidence            11    22223347779999999999 999999999998776543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.3e-26  Score=248.03  Aligned_cols=217  Identities=25%  Similarity=0.314  Sum_probs=155.8

Q ss_pred             CCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCc
Q 002376           56 SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL  135 (929)
Q Consensus        56 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  135 (929)
                      .++|.|.|+.|.... .++.+++++++++ .+|..+.  ++|++|+|++|++++..+..|.++++|++|+|++|+++...
T Consensus         2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            478999999986532 4567899999988 5777665  68899999999998777778899999999999999998766


Q ss_pred             ccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCc
Q 002376          136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT  215 (929)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~  215 (929)
                      +..|.++++|++|+|++|+++ .++...|.++++|++|+|++|++++.        .+..|..+++|++|+|++|+|++.
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL--------PPRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCee--------CHHHhCcCcCCCEEECCCCcCCcc
Confidence            667788889999999999887 56666678888888888888876442        334566777888888888888777


Q ss_pred             cCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCc
Q 002376          216 VPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE  286 (929)
Q Consensus       216 ~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  286 (929)
                      .+..|..+++|++|+|++|+++ .+|...+..+++|+.|++++|++++..+..|..+++|+.|+|++|.+.
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            6667777777777777777776 344333333455555555555554444444444444444444444443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=2.6e-26  Score=272.00  Aligned_cols=267  Identities=24%  Similarity=0.316  Sum_probs=133.0

Q ss_pred             cccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEec
Q 002376          201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRM  280 (929)
Q Consensus       201 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~L  280 (929)
                      +++.|++++|.|+ .+|..+.  ++|++|+|++|+|+ .+|.    .+++|++|++++|++++ +|.   .+++|++|+|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            5778888888887 5565554  67888888888776 4554    24455555555555543 222   3344445555


Q ss_pred             cCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEe
Q 002376          281 THNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL  360 (929)
Q Consensus       281 s~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  360 (929)
                      ++|.|++ +|.                                  .+++|++|+|++|++++ +|..+    ++|++|+|
T Consensus       109 s~N~l~~-l~~----------------------------------~l~~L~~L~L~~N~l~~-lp~~l----~~L~~L~L  148 (622)
T 3g06_A          109 FSNPLTH-LPA----------------------------------LPSGLCKLWIFGNQLTS-LPVLP----PGLQELSV  148 (622)
T ss_dssp             CSCCCCC-CCC----------------------------------CCTTCCEEECCSSCCSC-CCCCC----TTCCEEEC
T ss_pred             cCCcCCC-CCC----------------------------------CCCCcCEEECCCCCCCc-CCCCC----CCCCEEEC
Confidence            5544443 121                                  22344555555555542 33321    24555555


Q ss_pred             cCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccc
Q 002376          361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE  440 (929)
Q Consensus       361 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  440 (929)
                      ++|+|++. |.   .+++|+.|++++|.|++ +|   ..+++|+.|++++|+|++ +|..   +++|+.|++++|.++. 
T Consensus       149 s~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-  215 (622)
T 3g06_A          149 SDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-  215 (622)
T ss_dssp             CSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-
T ss_pred             cCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-
Confidence            55555432 22   12345555555555553 33   234455555555555543 2221   2445555555555542 


Q ss_pred             cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccccccccc
Q 002376          441 IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP  520 (929)
Q Consensus       441 ~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  520 (929)
                      +|..   +++|+.|+|++|+|++ +        |   ..+++|+.|+|++|+|++ +|.   .+++|+.|+|++|+|+ .
T Consensus       216 l~~~---~~~L~~L~Ls~N~L~~-l--------p---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~  275 (622)
T 3g06_A          216 LPAL---PSGLKELIVSGNRLTS-L--------P---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-R  275 (622)
T ss_dssp             CCCC---CTTCCEEECCSSCCSC-C--------C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-S
T ss_pred             cCCC---CCCCCEEEccCCccCc-C--------C---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-c
Confidence            2321   2445555555555543 2        1   122345555555555552 333   3445555555555555 3


Q ss_pred             CCccccCCCCCCEEECCCCcCCCcCCcccccC
Q 002376          521 IPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL  552 (929)
Q Consensus       521 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  552 (929)
                      +|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       276 lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L  307 (622)
T 3g06_A          276 LPESLIHLSSETTVNLEGNPLSERTLQALREI  307 (622)
T ss_dssp             CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred             CCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence            44455555555555555555555555444433

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=5.8e-28  Score=280.57  Aligned_cols=237  Identities=19%  Similarity=0.171  Sum_probs=142.0

Q ss_pred             ccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhh
Q 002376          271 NLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGN  350 (929)
Q Consensus       271 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  350 (929)
                      .+++|+.|+|++|.+++..|..|+.+++|++|+|++|.+....         .+..+++|++|+|++|.|++..+.    
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------~l~~l~~L~~L~Ls~N~l~~l~~~----   98 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---------DLESLSTLRTLDLNNNYVQELLVG----   98 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE---------ECTTCTTCCEEECCSSEEEEEEEC----
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc---------ccccCCCCCEEEecCCcCCCCCCC----
Confidence            3447788888888887766666666666666666666554321         244555666666666665532211    


Q ss_pred             ccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCcee
Q 002376          351 FSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQI  430 (929)
Q Consensus       351 ~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L  430 (929)
                        ++|++|++++|.|++..+..                           +++|++|+|++|.+++..|..+.++++|++|
T Consensus        99 --~~L~~L~L~~N~l~~~~~~~---------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  149 (487)
T 3oja_A           99 --PSIETLHAANNNISRVSCSR---------------------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYL  149 (487)
T ss_dssp             --TTCCEEECCSSCCCCEEECC---------------------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEE
T ss_pred             --CCcCEEECcCCcCCCCCccc---------------------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEE
Confidence              14555555555544433322                           3445555555555555445555555555555


Q ss_pred             cccCcccccccCcccc-cccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcce
Q 002376          431 DLSGNELTGEIPISFG-NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE  509 (929)
Q Consensus       431 ~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~  509 (929)
                      +|++|.+++..|..|. .+++|+.|+|++|.|++..          ....+++|+.|||++|++++.+| .+..+++|+.
T Consensus       150 ~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~----------~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~  218 (487)
T 3oja_A          150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK----------GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW  218 (487)
T ss_dssp             ECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE----------CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred             ECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc----------ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccE
Confidence            5555555555555543 4555666666666555321          11235566777777777765433 4777777788


Q ss_pred             eecccccccccCCccccCCCCCCEEECCCCcCC-CcCCcccccCCCCCeEeCC
Q 002376          510 LLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS-GSIPSDLQNLQALRSLNLT  561 (929)
Q Consensus       510 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls  561 (929)
                      |+|++|.|++ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus       219 L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          219 ISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             EEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            8888888775 5666777888888888888887 5667777777777777775

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.94  E-value=3.2e-29  Score=285.29  Aligned_cols=222  Identities=16%  Similarity=0.064  Sum_probs=149.9

Q ss_pred             hhCCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCC-ccccceeee--------
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRH-RNLVKLITS--------  710 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~H-pniv~l~~~--------  710 (929)
                      .+..|+..++||+|+||+||+|++.                   ...+.|.+|+.+++.++| +|......+        
T Consensus        76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~  155 (413)
T 3dzo_A           76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD  155 (413)
T ss_dssp             CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred             CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence            3445778899999999999999854                   124678899999999987 332221111        


Q ss_pred             -------------cccCCCCCcceEEEEEEecCCCCccccccc---------------cccccccHHHHHHHhhhCCCCC
Q 002376          711 -------------CSSLDSKNMEFLALVYEFLSNGSLGDWIHG---------------ERKNELDITSALDYLHNDCEVP  762 (929)
Q Consensus       711 -------------~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~---------------~~~~~~~ia~aL~yLH~~~~~~  762 (929)
                                   +...........+++|+++ +|+|.++++.               ...++.|++.||+|||+.   +
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~  231 (413)
T 3dzo_A          156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G  231 (413)
T ss_dssp             EEECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             hcccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence                         1100000012357777766 6899988841               112357999999999998   9


Q ss_pred             EEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceecccccccccccc----------CCCCCCCCCCCC
Q 002376          763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG----------LGERPSTAGDVP  832 (929)
Q Consensus       763 iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DV~  832 (929)
                      |+||||||+|||++.++.+||+|||+++.....         ....+| +.|||||++          .+..++.++|||
T Consensus       232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~---------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dvw  301 (413)
T 3dzo_A          232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS---------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTW  301 (413)
T ss_dssp             EECSCCCGGGEEECTTCCEEECCGGGCEETTEE---------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHH
T ss_pred             cccCCcccceEEEecCCeEEEEeccceeecCCc---------cccCCC-CceeCchhhhccccccccccCcCCCchhhHH
Confidence            999999999999999999999999999864321         233477 999999999          666689999999


Q ss_pred             CCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          833 TSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       833 s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      |+|+++|++.....++....  ..+.....+.    ..    ...++.    +++++.+||+.||++||++.|+++
T Consensus       302 SlGvil~elltg~~Pf~~~~--~~~~~~~~~~----~~----~~~~~~----~~~li~~~l~~dP~~Rpt~~~~l~  363 (413)
T 3dzo_A          302 TLGLAIYWIWCADLPNTDDA--ALGGSEWIFR----SC----KNIPQP----VRALLEGFLRYPKEDRLLPLQAME  363 (413)
T ss_dssp             HHHHHHHHHHHSSCCCCTTG--GGSCSGGGGS----SC----CCCCHH----HHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCCCcc--hhhhHHHHHh----hc----ccCCHH----HHHHHHHHccCChhhCcCHHHHHh
Confidence            99987777654443332111  1111111111    00    011122    333777999999999999888853

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=1.7e-30  Score=311.38  Aligned_cols=459  Identities=13%  Similarity=0.083  Sum_probs=227.2

Q ss_pred             CCCCCcceeeCCCCCcEEEEEcCCCCCccccC-CCCCCCCCCCEEEeecCCCC---CCCCcC------------CCCCCC
Q 002376           57 SPCTWPGVICNNFGNRVIGLNLSSFGLEGTIS-PHIGNLSFLRSIQLQNNKLS---GNLPRE------------IGNLFR  120 (929)
Q Consensus        57 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~-~~l~~L~~L~~L~Ls~N~l~---~~~p~~------------~~~l~~  120 (929)
                      -|++|.++...    ....+++++..  +..| ..+..+++|++|+|+++...   +..|..            +..+++
T Consensus        33 vck~W~~~~~~----~~~~l~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~  106 (594)
T 2p1m_B           33 VCKSWYEIERW----CRRKVFIGNCY--AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTW  106 (594)
T ss_dssp             SCHHHHHHHHH----HCCEEEESSTT--SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred             HHHHHHHhhhh----hceEEeecccc--ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCC
Confidence            45579888321    22345555432  2222 23567789999999997632   122322            235678


Q ss_pred             CcEEeCCCCCCCCCcccccc-cccccceeccccc-ccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCC
Q 002376          121 LRVLNISFNNLQGELPVNIS-KLTELKMLDLMAN-KITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSR  198 (929)
Q Consensus       121 L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~  198 (929)
                      |++|+|++|.+++..+..+. .+++|++|+|++| .++.......+.++++|++|+|++|.+++..+..+..    ....
T Consensus       107 L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~----~~~~  182 (594)
T 2p1m_B          107 LEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH----FPDT  182 (594)
T ss_dssp             CCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG----SCTT
T ss_pred             CCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH----Hhhc
Confidence            88888888888877666665 6788888888888 4542212233457888888888888876654443332    2345


Q ss_pred             CCcccEEEeeccc--CCCc-cCCccccCCCCceEEeeec-CCCCcCCcccccCCCCcceeeccCCcCCCCCCCccccccc
Q 002376          199 LENLKVLDLTINR--LAGT-VPSTIYNMTSLVHLRLASN-QLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN  274 (929)
Q Consensus       199 l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~L~Ls~N-~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~  274 (929)
                      +++|+.|+|++|.  ++.. ++..+.++++|++|+|++| .+. .+|..+. .+++|++|.++.+..             
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~-~~~~L~~L~l~~~~~-------------  247 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ-RAPQLEELGTGGYTA-------------  247 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH-HCTTCSEEECSBCCC-------------
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh-cCCcceEcccccccC-------------
Confidence            6778888888776  2211 1112234577777777776 222 2333222 255555555433211             


Q ss_pred             ccEEeccCccCcCCccCCCCCCCcccee-ccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCch-hhhcc
Q 002376          275 IQIIRMTHNLLEGTLPPGLGNLPFLRTY-NIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPES-IGNFS  352 (929)
Q Consensus       275 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  352 (929)
                          +++.|.+.+ ++..+.++++|+.+ .+.......        +...+..+++|++|+|++|.+++..... +..++
T Consensus       248 ----~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~~--------l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~  314 (594)
T 2p1m_B          248 ----EVRPDVYSG-LSVALSGCKELRCLSGFWDAVPAY--------LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCP  314 (594)
T ss_dssp             ----CCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGGG--------GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCT
T ss_pred             ----ccchhhHHH-HHHHHhcCCCcccccCCcccchhh--------HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCC
Confidence                011222222 11233344444443 111111000        0011123445555555555544322222 12222


Q ss_pred             ccccEEEecCCccccc-cCCCCCCCCcccEEEee---------CCCCCcccCcccc-CCCCCCEEEecCCcCCCCCcccc
Q 002376          353 NELSKLYLGGNHIYGK-IPASIGRLRSLTLLDLS---------YNSISGEIPIEIG-QLQGLQVLGLAGNEIPGGIPNSL  421 (929)
Q Consensus       353 ~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls---------~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~  421 (929)
                       +|++|++++| +... ++.....+++|++|+|+         .|.+++.....+. .+++|+.|+++.|.+++..+..+
T Consensus       315 -~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l  392 (594)
T 2p1m_B          315 -KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITI  392 (594)
T ss_dssp             -TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHH
T ss_pred             -CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHH
Confidence             4555555554 2211 11111234555555552         2334332222222 25556666555555554433333


Q ss_pred             c-CCCCCceeccc--C----ccccc-----ccCcccccccccceecccCCcCCCCCCCCcccCCchhhhc-ccCccEEEe
Q 002376          422 A-NLKKLNQIDLS--G----NELTG-----EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISR-LENVVTIDL  488 (929)
Q Consensus       422 ~-~l~~L~~L~Ls--~----N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~-l~~L~~LdL  488 (929)
                      . .+++|+.|+|+  +    |.+++     .++..+.++++|+.|+|++ .+++..        +..+.. +++|+.|+|
T Consensus       393 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~--------~~~l~~~~~~L~~L~L  463 (594)
T 2p1m_B          393 ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV--------FEYIGTYAKKMEMLSV  463 (594)
T ss_dssp             HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH--------HHHHHHHCTTCCEEEE
T ss_pred             HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH--------HHHHHHhchhccEeec
Confidence            3 35556666665  2    33431     1112244555666666654 343211        223333 556666666


Q ss_pred             cCCCCCCCCCcch-hcCcCcceeecccccccccCCc-cccCCCCCCEEECCCCcCCCcCCccc-ccCCCCCeEeCCCCc
Q 002376          489 SDNSLSGNLPNSL-KNCKSLEELLMAYNQFSGPIPN-IVAELKGLEVLDLSSNKLSGSIPSDL-QNLQALRSLNLTFNN  564 (929)
Q Consensus       489 s~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~  564 (929)
                      ++|.+++..+..+ ..+++|++|+|++|.+++.... .+..+++|+.|++++|+++......+ ..+++|+...+..+.
T Consensus       464 ~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             ESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             cCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            6666654433333 4566666666666666543332 33346666666666666643222222 344555544444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.94  E-value=3.3e-26  Score=245.93  Aligned_cols=228  Identities=23%  Similarity=0.243  Sum_probs=189.8

Q ss_pred             EEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCC
Q 002376          332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN  411 (929)
Q Consensus       332 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  411 (929)
                      ..+.++..++ .+|..+.   .+|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            3455555565 5666543   37899999999998888888999999999999999998777778889999999999999


Q ss_pred             cCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCC
Q 002376          412 EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN  491 (929)
Q Consensus       412 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N  491 (929)
                      ++++..+..|.++++|++|++++|++++..+..|.++++|++|++++|++++.       .+|..+..+++|++|+|++|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~l~~~~~~l~~L~~L~Ls~N  159 (276)
T 2z62_A           87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNLEHLDLSSN  159 (276)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-------CCCGGGGGCTTCCEEECCSS
T ss_pred             ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee-------cCchhhccCCCCCEEECCCC
Confidence            99888888899999999999999999887777888999999999999998742       13778888899999999999


Q ss_pred             CCCCCCCcchhcCcCcc----eeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          492 SLSGNLPNSLKNCKSLE----ELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       492 ~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      ++++..+..+..+.+|+    .|++++|++++..+..+.. .+|+.|+|++|++++..+..+..+++|+.|++++|++++
T Consensus       160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            99988888888888777    8899999999777666654 489999999999997777778889999999999999987


Q ss_pred             cCCC
Q 002376          568 VVPS  571 (929)
Q Consensus       568 ~~p~  571 (929)
                      ..|.
T Consensus       239 ~c~~  242 (276)
T 2z62_A          239 SCPR  242 (276)
T ss_dssp             CTTT
T ss_pred             cCCc
Confidence            6553

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.93  E-value=7e-28  Score=262.23  Aligned_cols=214  Identities=19%  Similarity=0.196  Sum_probs=148.3

Q ss_pred             hCCCCCc-eeecccCceeEEeccccC-----------cHHHHHHHHHHH-HccCCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHE-NLIGSGSFGSVLHNERTG-----------SWKSFIAECETL-RNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~-~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l-~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|... +.||+|+||.||++....           ....+.+|+.++ +..+||||+++++++.... ......++||
T Consensus        16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~-~~~~~~~lv~   94 (299)
T 3m2w_A           16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLY-AGRKCLLIVM   94 (299)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEEEEEEEE
T ss_pred             ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecccHHHHHHHHHHHHhccCCCchhHHhhhhhhc-CCCceEEEEE
Confidence            3466666 789999999999997642           245788999988 5669999999999985421 1245689999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEeccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLL  793 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~  793 (929)
                      ||+++|+|.+++....          .++.|++.||+|||+.   +|+||||||+||+++.   ++.+||+|||+++...
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           95 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             CCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             eecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence            9999999999986432          2367899999999998   9999999999999998   7899999999987431


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccch
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  872 (929)
                                                  +..++.++||||+|++++++.....++..... ............   ....
T Consensus       172 ----------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~---~~~~  220 (299)
T 3m2w_A          172 ----------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM---GQYE  220 (299)
T ss_dssp             ----------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCT---TCCS
T ss_pred             ----------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhh---cccc
Confidence                                        23467789999999877776554443322111 000000000000   0000


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........+..-+.+++.+||+.||++|||++|+++
T Consensus       221 ~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~  256 (299)
T 3m2w_A          221 FPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  256 (299)
T ss_dssp             SCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred             CCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence            000000111222334777999999999999999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=9.2e-29  Score=296.25  Aligned_cols=422  Identities=16%  Similarity=0.146  Sum_probs=257.6

Q ss_pred             CEEEeecCCCCCCCC-cCCCCCCCCcEEeCCCCCCCC---Cccc------------ccccccccceecccccccCCCCCh
Q 002376           98 RSIQLQNNKLSGNLP-REIGNLFRLRVLNISFNNLQG---ELPV------------NISKLTELKMLDLMANKITGRVTD  161 (929)
Q Consensus        98 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~---~~p~------------~~~~l~~L~~L~Ls~N~l~~~i~~  161 (929)
                      +.+++++...  ..| ..+..+++|++|+|+++....   ..|.            .+..+++|++|+|++|.+++..+.
T Consensus        46 ~~l~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~  123 (594)
T 2p1m_B           46 RKVFIGNCYA--VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE  123 (594)
T ss_dssp             CEEEESSTTS--SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred             eEEeeccccc--cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence            4566654332  222 235567788899988875321   1121            123566777777777776643333


Q ss_pred             hhhc-cCCCCcEEEcccc-ccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccc----cCCCCceEEeeecC
Q 002376          162 DQLR-NLRSLQVLNFGKN-LLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIY----NMTSLVHLRLASNQ  235 (929)
Q Consensus       162 ~~~~-~l~~L~~L~Ls~N-~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l~~L~~L~Ls~N~  235 (929)
                      . +. .+++|++|+|++| .++..       .++..+..+++|++|+|++|.+++..+..+.    .+++|++|+|++|.
T Consensus       124 ~-l~~~~~~L~~L~L~~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          124 L-IAKSFKNFKVLVLSSCEGFSTD-------GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             H-HHHHCTTCCEEEEESCEEEEHH-------HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             H-HHHhCCCCcEEeCCCcCCCCHH-------HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence            3 33 5677777777766 32110       0112233566777777777766654443333    44566666666664


Q ss_pred             CCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCc-cCcCCccCCCCCCCccceeccccc-------
Q 002376          236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHN-LLEGTLPPGLGNLPFLRTYNIGFN-------  307 (929)
Q Consensus       236 l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N-------  307 (929)
                        +.++...                    ++..+.++++|+.|++++| .+++ +|..+..+++|+.|+++.+       
T Consensus       196 --~~~~~~~--------------------l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~  252 (594)
T 2p1m_B          196 --SEVSFSA--------------------LERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPD  252 (594)
T ss_dssp             --SCCCHHH--------------------HHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred             --CcCCHHH--------------------HHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchh
Confidence              1121111                    1111223455555555555 2332 4445555556666654333       


Q ss_pred             cccCCCCCCCCccccccCCCCCCCEE-EccCCccccccCchhhhccccccEEEecCCcccccc-CCCCCCCCcccEEEee
Q 002376          308 KIVSSGDDEGLSFITSLTNSTHLNYL-ALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI-PASIGRLRSLTLLDLS  385 (929)
Q Consensus       308 ~i~~~~~~~~~~~~~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls  385 (929)
                      .+...        ...+.++++|+.| .+.+... +.+|..+..++ +|++|+|++|.+++.. +..+..+++|++|+++
T Consensus       253 ~~~~l--------~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~-~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~  322 (594)
T 2p1m_B          253 VYSGL--------SVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS-RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL  322 (594)
T ss_dssp             HHHHH--------HHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT-TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hHHHH--------HHHHhcCCCcccccCCcccch-hhHHHHHHhhC-CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCc
Confidence            22221        2356788899998 4554433 34555555555 7999999999977543 2335688999999999


Q ss_pred             CCCCCcc-cCccccCCCCCCEEEecC---------CcCCCCCccccc-CCCCCceecccCcccccccCcccc-cccccce
Q 002376          386 YNSISGE-IPIEIGQLQGLQVLGLAG---------NEIPGGIPNSLA-NLKKLNQIDLSGNELTGEIPISFG-NFQSLLS  453 (929)
Q Consensus       386 ~N~l~~~-~p~~~~~l~~L~~L~L~~---------N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~  453 (929)
                      +| +.+. ++.....+++|++|++++         |.+++.....+. ++++|+.|+++.|.+++..+..+. .+++|+.
T Consensus       323 ~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~  401 (594)
T 2p1m_B          323 DY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR  401 (594)
T ss_dssp             GG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred             Cc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence            88 4432 233334589999999943         555543333333 478999999999999876665554 5889999


Q ss_pred             eccc--C----CcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhc-CcCcceeecccccccccCCccc-
Q 002376          454 IDLS--N----NRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKN-CKSLEELLMAYNQFSGPIPNIV-  525 (929)
Q Consensus       454 L~Ls--~----N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-  525 (929)
                      |+++  +    |.+++. |..  ..++..+..+++|+.|+|++ .+++..+..++. +++|+.|+|++|.+++..+..+ 
T Consensus       402 L~L~~~~~~~~~~l~~~-~~~--~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~  477 (594)
T 2p1m_B          402 FRLCIIEPKAPDYLTLE-PLD--IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVL  477 (594)
T ss_dssp             EEEEESSTTCCCTTTCC-CTH--HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHH
T ss_pred             eEeecccCCCcccccCC-chh--hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHH
Confidence            9998  4    555421 100  01133366788999999977 666655555655 8889999999999876655554 


Q ss_pred             cCCCCCCEEECCCCcCCCcCCc-ccccCCCCCeEeCCCCcCcc
Q 002376          526 AELKGLEVLDLSSNKLSGSIPS-DLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       526 ~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      ..+++|++|+|++|.+++..+. ....+++|+.|++++|+++.
T Consensus       478 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             HHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             hcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            6688999999999998654433 44568899999999998743

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.92  E-value=2.1e-24  Score=230.98  Aligned_cols=202  Identities=23%  Similarity=0.276  Sum_probs=105.9

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      ..+.+++++|+++ .+|..+.   .+++.|+|++|++++..+..|.++++|++|+|++|+++...+..|..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            3556666666666 3554332   24666666666666555555666666666666666655444444455555555555


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                      ++|++++..+..|.++++|++|+|++|++++..+..|.++++|++                                |+|
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~--------------------------------L~L  140 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY--------------------------------LSL  140 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCE--------------------------------EEC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCE--------------------------------EEC
Confidence            555555444444455555555555555554444444444444444                                444


Q ss_pred             cCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCc
Q 002376          489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      ++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++.
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            444444333344455555555555555555544445555555555555555555444444555555555555544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=1e-24  Score=234.32  Aligned_cols=209  Identities=25%  Similarity=0.248  Sum_probs=165.5

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG  407 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  407 (929)
                      ++|++|+|++|++++..+..+..+. +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            3577777777777765555666666 688888888888877777788888888888888888877777788888888888


Q ss_pred             ecCCcCCCCCcccccCCCCCceecccCcccccc-cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCcc--
Q 002376          408 LAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE-IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV--  484 (929)
Q Consensus       408 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~--  484 (929)
                      +++|++++..+..+..+++|++|++++|++++. +|..|.++++|++|+|++|++++..        +..+..+.+|+  
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~l  178 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY--------CTDLRVLHQMPLL  178 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC--------GGGGHHHHTCTTC
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC--------HHHhhhhhhcccc
Confidence            888888877776788888888888888888763 5778888888888888888887532        44555555665  


Q ss_pred             --EEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCC
Q 002376          485 --TIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIP  546 (929)
Q Consensus       485 --~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  546 (929)
                        .|++++|++++..+..+.. .+|++|+|++|++++.++..|..+++|+.|+|++|++++..|
T Consensus       179 ~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          179 NLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence              8999999998766655544 489999999999998888888999999999999999997654

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=2.4e-26  Score=270.60  Aligned_cols=142  Identities=18%  Similarity=0.084  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc-----cccccHHHHHHHhhhCC
Q 002376          686 WKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER-----KNELDITSALDYLHNDC  759 (929)
Q Consensus       686 ~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~-----~~~~~ia~aL~yLH~~~  759 (929)
                      .++|.+|+++|+++ +|+||+++++++.+     ....||||||++||+|.+++....     .+..||+.||+|+|++ 
T Consensus       285 ~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-----~~~~yLVMEyv~G~~L~d~i~~~~~l~~~~I~~QIl~AL~ylH~~-  358 (569)
T 4azs_A          285 KYELHNEIKFLTQPPAGFDAPAVLAHGEN-----AQSGWLVMEKLPGRLLSDMLAAGEEIDREKILGSLLRSLAALEKQ-  358 (569)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCCEEEEEEC-----SSEEEEEEECCCSEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHhcCCCCCeeEEEEEEEE-----CCEEEEEEecCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHC-
Confidence            46799999999999 79999999999843     445899999999999999997433     3578999999999998 


Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCC
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAG  839 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~  839 (929)
                        +||||||||+|||++++|.+||+|||+|+.....      .......+||++|||||++.+ .+..++|+|+.|+..+
T Consensus       359 --GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~------~~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~  429 (569)
T 4azs_A          359 --GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD------CSWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPF  429 (569)
T ss_dssp             --TCEESCCCGGGEEECTTSCEEECCCTTEESCC---------CCSHHHHHHHHHHHHHHC------------------C
T ss_pred             --CceeccCchHhEEECCCCCEEEeecccCeeCCCC------CccccCceechhhccHHHhCC-CCCCcccccccccchh
Confidence              9999999999999999999999999999865321      122345689999999999875 5678899999998877


Q ss_pred             Ccc
Q 002376          840 EFN  842 (929)
Q Consensus       840 ~~~  842 (929)
                      ++.
T Consensus       430 ~l~  432 (569)
T 4azs_A          430 NLP  432 (569)
T ss_dssp             CCC
T ss_pred             hhc
Confidence            753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.92  E-value=1.8e-24  Score=233.68  Aligned_cols=205  Identities=24%  Similarity=0.283  Sum_probs=141.2

Q ss_pred             CCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccc
Q 002376          373 IGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLL  452 (929)
Q Consensus       373 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  452 (929)
                      ++++++++++++++|.++ .+|..+.  +++++|+|++|++++..+..|.++++|++|+|++|.+++..+.  ..+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence            344556666666666665 3444332  4566666666666666666666666677777777766654332  5667777


Q ss_pred             eecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCC
Q 002376          453 SIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLE  532 (929)
Q Consensus       453 ~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  532 (929)
                      +|+|++|+|+ .+        |..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++.++..|..+++|+
T Consensus        81 ~L~Ls~N~l~-~l--------~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           81 TLDLSHNQLQ-SL--------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             EEECCSSCCS-SC--------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             EEECCCCcCC-cC--------chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            7777777765 22        44556667777777777777776667777888888888888888877777777788888


Q ss_pred             EEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcC
Q 002376          533 VLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       533 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~  591 (929)
                      .|+|++|+|++..+..|..+++|+.|+|++|+++..++.......++.+++.+||+.|.
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence            88888888886656667778888888888888875544444456677888888888883

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.92  E-value=4e-25  Score=236.75  Aligned_cols=186  Identities=23%  Similarity=0.291  Sum_probs=87.1

Q ss_pred             CCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCC
Q 002376          325 TNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ  404 (929)
Q Consensus       325 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  404 (929)
                      ..+++|++|+|++|++++ + ..+..+. +|++|+|++|.+++..+..|+++++|++|+|++|++++..+..|..+++|+
T Consensus        60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           60 QYLPNVRYLALGGNKLHD-I-SALKELT-NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGCTTCCEEECTTSCCCC-C-GGGTTCT-TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccCCCCcEEECCCCCCCC-c-hhhcCCC-CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence            334444444555444442 1 2333333 344444444444444444444444444444444444444444444444444


Q ss_pred             EEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCcc
Q 002376          405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV  484 (929)
Q Consensus       405 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~  484 (929)
                      +|++++|++++..+..|..+++|++|++++|++++..+..|.++                                ++|+
T Consensus       137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------------------------~~L~  184 (272)
T 3rfs_A          137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL--------------------------------TQLK  184 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------------------------------TTCC
T ss_pred             EEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC--------------------------------ccCC
Confidence            44444444444444444444444444444444444333334444                                4444


Q ss_pred             EEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccC
Q 002376          485 TIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNL  552 (929)
Q Consensus       485 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  552 (929)
                      .|+|++|++++..|..+..+++|+.|+|++|.+.+.       +++|+.|+++.|+++|.+|.+++.+
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence            444444444444444445555555555555544432       2345555555555555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=3.3e-25  Score=237.44  Aligned_cols=200  Identities=21%  Similarity=0.268  Sum_probs=167.9

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      +|+.|++++|.++..  ..+..+++|++|+|++|.+++.  ..+..+++|++|++++|.+++..+..|.++++|++|+|+
T Consensus        42 ~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           42 SIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             TCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            577777777776632  3467778888888888888753  367788888888888888888777778888888888888


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecc
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA  513 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  513 (929)
                      +|++++..+..|.++++|++|++++|++++..        |..+..+++|+.|+|++|++++..|..|+.+++|+.|+|+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP--------KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccC--------HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            88888777777888889999999999887432        3456778899999999999998888889999999999999


Q ss_pred             cccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCC
Q 002376          514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSE  572 (929)
Q Consensus       514 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  572 (929)
                      +|++++.+|..+..+++|+.|+|++|.+.+..       +.|+.++++.|.++|.+|..
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGBBCT
T ss_pred             CCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcccCc
Confidence            99999999989999999999999999998654       46899999999999999975

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.91  E-value=3.3e-24  Score=234.36  Aligned_cols=228  Identities=24%  Similarity=0.298  Sum_probs=186.2

Q ss_pred             CCCCEEEccCCccccccCch---hhhccccccEEEecCCccccccCCCC--CCCCcccEEEeeCCCCCcccC----cccc
Q 002376          328 THLNYLALDGNQFEGKIPES---IGNFSNELSKLYLGGNHIYGKIPASI--GRLRSLTLLDLSYNSISGEIP----IEIG  398 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~---~~~~~~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~~~  398 (929)
                      ..++.|.+.++.++...-..   +.... +|++|+|++|++++..|..+  ..+++|++|+|++|.+++..+    ..+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            45778888888775321111   11233 69999999999999999998  999999999999999997655    4456


Q ss_pred             CCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccc---c-CcccccccccceecccCCcCCCCCCCCcccCCc
Q 002376          399 QLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE---I-PISFGNFQSLLSIDLSNNRINGNIPKGILRPLP  474 (929)
Q Consensus       399 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~-p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p  474 (929)
                      .+++|++|+|++|++++..|..|..+++|++|||++|++.+.   . +..+..+++|++|+|++|+++. ++     ..+
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~-----~~~  216 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PT-----GVC  216 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HH-----HHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hH-----HHH
Confidence            799999999999999999999999999999999999998753   2 3345789999999999999963 21     012


Q ss_pred             h-hhhcccCccEEEecCCCCCCCCCcchhcC---cCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccc
Q 002376          475 E-EISRLENVVTIDLSDNSLSGNLPNSLKNC---KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQ  550 (929)
Q Consensus       475 ~-~~~~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  550 (929)
                      . .+..+++|++|||++|++++..|..+..+   ++|++|+|++|+|+ .+|..+.  ++|++|||++|+|++. |. +.
T Consensus       217 ~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~  291 (310)
T 4glp_A          217 AALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD  291 (310)
T ss_dssp             HHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT
T ss_pred             HHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh
Confidence            2 25788999999999999999888888877   69999999999999 5676664  7999999999999964 43 67


Q ss_pred             cCCCCCeEeCCCCcCcc
Q 002376          551 NLQALRSLNLTFNNLEG  567 (929)
Q Consensus       551 ~l~~L~~L~Ls~N~l~~  567 (929)
                      .+++|+.|+|++|+++.
T Consensus       292 ~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          292 ELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSCEECSSTTTSC
T ss_pred             hCCCccEEECcCCCCCC
Confidence            88999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.91  E-value=3.7e-24  Score=224.65  Aligned_cols=186  Identities=15%  Similarity=0.193  Sum_probs=153.1

Q ss_pred             ccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCC-CCCCcccccccccccceecccc-cccCCCCChhh
Q 002376           86 TISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNN-LQGELPVNISKLTELKMLDLMA-NKITGRVTDDQ  163 (929)
Q Consensus        86 ~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~i~~~~  163 (929)
                      .+|. +.  ++|++|+|++|++++..+..|+++++|++|+|++|+ +++..+..|.++++|++|+|++ |+++ .+++..
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~  100 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDA  100 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTS
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHH
Confidence            5666 43  389999999999998888899999999999999997 8877777899999999999999 9998 677777


Q ss_pred             hccCCCCcEEEccccccCCCCCccccccCCCccCCCCccc---EEEeecc-cCCCccCCccccCCCCc-eEEeeecCCCC
Q 002376          164 LRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLK---VLDLTIN-RLAGTVPSTIYNMTSLV-HLRLASNQLGG  238 (929)
Q Consensus       164 ~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~---~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~  238 (929)
                      |.++++|++|++++|++++ +|        . |..+++|+   +|++++| +++++.+..|.++++|+ +|+|++|+++ 
T Consensus       101 f~~l~~L~~L~l~~n~l~~-lp--------~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-  169 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM-FP--------D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-  169 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS-CC--------C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-
T ss_pred             hCCCCCCCEEeCCCCCCcc-cc--------c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-
Confidence            9999999999999999865 33        2 55667777   9999999 99988888899999999 9999999998 


Q ss_pred             cCCcccccCCCCcceeeccCCc-CCCCCCCccccc-ccccEEeccCccCcC
Q 002376          239 EIPYDVRDTLPNLLDFIYCFNR-FTGKIPGSLHNL-TNIQIIRMTHNLLEG  287 (929)
Q Consensus       239 ~ip~~~~~~l~~L~~l~l~~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~  287 (929)
                      .+|...+.. ++|+.|++++|+ +++..+..|.++ ++|+.|++++|+|++
T Consensus       170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC
T ss_pred             ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc
Confidence            777776664 667777777773 666556666666 667777777666664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1e-23  Score=227.73  Aligned_cols=205  Identities=22%  Similarity=0.228  Sum_probs=128.7

Q ss_pred             ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCC
Q 002376          323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG  402 (929)
Q Consensus       323 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  402 (929)
                      .+.++++++++++++|.++ .+|..+.   ..++.|+|++|+|++..+..|.++++|++|+|++|.|++..+.  +.+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred             cccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence            3566788888888888887 5666553   3688888888888877777888888888888888888754332  56777


Q ss_pred             CCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccC
Q 002376          403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN  482 (929)
Q Consensus       403 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~  482 (929)
                      |++|+|++|+|+ .+|..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|+                    
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~--------------------  137 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK--------------------  137 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC--------------------
T ss_pred             CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC--------------------
Confidence            777777777776 45566666666777777776666555556666666666666666655                    


Q ss_pred             ccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCC
Q 002376          483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTF  562 (929)
Q Consensus       483 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  562 (929)
                                  +..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.++|++
T Consensus       138 ------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          138 ------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             ------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCS
T ss_pred             ------------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCC
Confidence                        333333444444444555555554444444444555555555555554 3444444445555555555


Q ss_pred             CcCcc
Q 002376          563 NNLEG  567 (929)
Q Consensus       563 N~l~~  567 (929)
                      |++.+
T Consensus       205 Np~~C  209 (290)
T 1p9a_G          205 NPWLC  209 (290)
T ss_dssp             CCBCC
T ss_pred             CCccC
Confidence            55543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=9.5e-24  Score=223.24  Aligned_cols=191  Identities=27%  Similarity=0.311  Sum_probs=150.3

Q ss_pred             CCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcc
Q 002376           57 SPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELP  136 (929)
Q Consensus        57 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  136 (929)
                      +||.|.|.+|...   ...+++++++++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+|++..|
T Consensus         3 ~Cp~~~gC~C~~~---~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNEG---KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEGG---GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCCC---CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            5889999999642   336889999988 6787776  689999999999998888899999999999999999999888


Q ss_pred             cccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCcc
Q 002376          137 VNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV  216 (929)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~  216 (929)
                      ..|.++++|++|+|++|+|+ .+++..|.++++|++|+|++|++++        +.+..|..+++|++|+|++|+|+++.
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~Ls~N~l~~~~  147 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS--------LPSGVFDRLTKLKELRLNTNQLQSIP  147 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             hHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCC--------cChhHhccCCcccEEECcCCcCCccC
Confidence            88999999999999999998 5677778889999999999998753        23345677888888888888888777


Q ss_pred             CCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCC
Q 002376          217 PSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTG  263 (929)
Q Consensus       217 p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~  263 (929)
                      +..|.++++|++|+|++|+|+ .+|...+..+++|+.+++++|.+++
T Consensus       148 ~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          148 AGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             HHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeC
Confidence            778888888888888888877 3333333334444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=3.2e-23  Score=217.53  Aligned_cols=196  Identities=16%  Similarity=0.227  Sum_probs=118.7

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCC-CCcccCccccCCCCCCEEEecC-CcCCCCCcccccCCCCCceec
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS-ISGEIPIEIGQLQGLQVLGLAG-NEIPGGIPNSLANLKKLNQID  431 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~  431 (929)
                      +|++|++++|+|++..+..|.++++|++|+|++|+ +++..+..|.++++|++|++++ |++++..+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67777777777777666677777777777777775 6655555677777777777776 777766666677777777777


Q ss_pred             ccCcccccccCcccccccccc---eecccCC-cCCCCCCCCcccCCchhhhcccCcc-EEEecCCCCCCCCCcchhcCcC
Q 002376          432 LSGNELTGEIPISFGNFQSLL---SIDLSNN-RINGNIPKGILRPLPEEISRLENVV-TIDLSDNSLSGNLPNSLKNCKS  506 (929)
Q Consensus       432 Ls~N~l~~~~p~~~~~l~~L~---~L~Ls~N-~l~g~i~~~~~~~~p~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~  506 (929)
                      +++|++++ +|. |..+++|+   +|++++| ++++ +|       +..+..+++|+ .|++++|+++...+..|.. ++
T Consensus       112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~-i~-------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~  180 (239)
T 2xwt_C          112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTS-IP-------VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK  180 (239)
T ss_dssp             EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCE-EC-------TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred             CCCCCCcc-ccc-cccccccccccEEECCCCcchhh-cC-------cccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence            77777765 444 55565555   6666666 5542 21       22344555555 6666666555222222333 55


Q ss_pred             cceeeccccc-ccccCCccccCC-CCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCC
Q 002376          507 LEELLMAYNQ-FSGPIPNIVAEL-KGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       507 L~~L~Ls~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      |+.|+|++|+ +++..+..|..+ ++|+.|||++|++++ +|..  .+++|+.|+++++
T Consensus       181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred             CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence            6666666663 555555555555 566666666666653 2322  3445555555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=7.2e-25  Score=245.14  Aligned_cols=234  Identities=22%  Similarity=0.292  Sum_probs=132.0

Q ss_pred             EEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCC-CCCEEEccCCccccccCchhhhc----
Q 002376          277 IIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNST-HLNYLALDGNQFEGKIPESIGNF----  351 (929)
Q Consensus       277 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~----  351 (929)
                      .+++++|.+++.+|..+...++|++|++++|.+...+..   .....+..++ +|++|+|++|++++..+..+...    
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV---ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH---HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH---HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            467888899988887777777788888888887654321   1113455666 77778888887776666666554    


Q ss_pred             cccccEEEecCCccccccCCCCC----CC-CcccEEEeeCCCCCcccCccccC-----CCCCCEEEecCCcCCCCCc---
Q 002376          352 SNELSKLYLGGNHIYGKIPASIG----RL-RSLTLLDLSYNSISGEIPIEIGQ-----LQGLQVLGLAGNEIPGGIP---  418 (929)
Q Consensus       352 ~~~L~~L~Ls~N~l~~~~p~~~~----~l-~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p---  418 (929)
                      ..+|++|+|++|.+++..+..+.    .+ ++|++|+|++|++++..+..+..     .++|++|+|++|++++..+   
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence            12577777777777655544332    22 66777777777766554433322     2466666666666664332   


Q ss_pred             -ccccCCC-CCceecccCcccccccCccccc----c-cccceecccCCcCCCCCCCCcccCCchhhhcc-cCccEEEecC
Q 002376          419 -NSLANLK-KLNQIDLSGNELTGEIPISFGN----F-QSLLSIDLSNNRINGNIPKGILRPLPEEISRL-ENVVTIDLSD  490 (929)
Q Consensus       419 -~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l-~~L~~LdLs~  490 (929)
                       ..+..++ +|++|+|++|++++..+..+..    + ++|+.|+|++|+|++.-    ...++..+..+ ++|++|||++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~----~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS----YAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHHSCTTCCEEECCS
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH----HHHHHHHHhcCCCCceEEECcC
Confidence             2233343 6666666666665544433322    2 35666666666654311    01123334332 3555666666


Q ss_pred             CCCCCCCCc----chhcCcCcceeecccccc
Q 002376          491 NSLSGNLPN----SLKNCKSLEELLMAYNQF  517 (929)
Q Consensus       491 N~l~~~~p~----~~~~l~~L~~L~Ls~N~l  517 (929)
                      |.+++..+.    .+..+++|+.|+|++|.+
T Consensus       235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             CCCCcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            655544332    223344555555555553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.3e-25  Score=249.19  Aligned_cols=37  Identities=32%  Similarity=0.489  Sum_probs=17.1

Q ss_pred             cccEEEeecccCCCccC----CccccCC-CCceEEeeecCCC
Q 002376          201 NLKVLDLTINRLAGTVP----STIYNMT-SLVHLRLASNQLG  237 (929)
Q Consensus       201 ~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~  237 (929)
                      +|++|||++|+|++..+    ..|.+++ +|++|+|++|+|+
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~   64 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG   64 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC
Confidence            35555555555444433    3344444 4444444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=4.2e-25  Score=249.51  Aligned_cols=240  Identities=22%  Similarity=0.275  Sum_probs=122.9

Q ss_pred             cCCCCCCCEEEccCCccccccCch----hhhccccccEEEecCC---ccccccCCCC-------CCCCcccEEEeeCCCC
Q 002376          324 LTNSTHLNYLALDGNQFEGKIPES----IGNFSNELSKLYLGGN---HIYGKIPASI-------GRLRSLTLLDLSYNSI  389 (929)
Q Consensus       324 ~~~l~~L~~L~Ls~N~l~~~~p~~----~~~~~~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls~N~l  389 (929)
                      +..+++|++|+|++|++++..+..    +..++ +|++|+|++|   ++++.+|..+       ..+++|++|+|++|.+
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            334445555555555554432222    22232 4555555443   2223333222       4556666666666666


Q ss_pred             Cc----ccCccccCCCCCCEEEecCCcCCCCCccccc----CC---------CCCceecccCcccc-cccC---cccccc
Q 002376          390 SG----EIPIEIGQLQGLQVLGLAGNEIPGGIPNSLA----NL---------KKLNQIDLSGNELT-GEIP---ISFGNF  448 (929)
Q Consensus       390 ~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~Ls~N~l~-~~~p---~~~~~l  448 (929)
                      ++    .+|..+..+++|++|+|++|.+++..+..+.    .+         ++|++|+|++|+++ +.+|   ..|..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            54    3455555566666666666665433222222    22         56666666666664 2233   244455


Q ss_pred             cccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCC----CCCCcchhcCcCcceeeccccccccc----
Q 002376          449 QSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS----GNLPNSLKNCKSLEELLMAYNQFSGP----  520 (929)
Q Consensus       449 ~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----  520 (929)
                      ++|++|+|++|+|+..   ++....|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|+|++|+|++.    
T Consensus       187 ~~L~~L~L~~n~l~~~---g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~  263 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  263 (386)
T ss_dssp             TTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             CCcCEEECcCCCCCHh---HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence            5666666666655410   000001224455556666666666654    34555566666666666666666544    


Q ss_pred             CCcccc--CCCCCCEEECCCCcCCC----cCCccc-ccCCCCCeEeCCCCcCcc
Q 002376          521 IPNIVA--ELKGLEVLDLSSNKLSG----SIPSDL-QNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       521 ~p~~~~--~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~  567 (929)
                      +|..+.  .+++|+.|+|++|++++    .+|..+ .++++|++|++++|++++
T Consensus       264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            344442  26666666666666665    355555 445666666666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.7e-22  Score=213.56  Aligned_cols=179  Identities=19%  Similarity=0.249  Sum_probs=100.3

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      ..++++++++.++ .+|..+.  ++|+.|+|++|.+++..+..|..+++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            4667777777776 3444443  466777777777776666666666666666666666666666666666666666666


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecc
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA  513 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  513 (929)
                      +|++++..+..|..+++|++|+|++|+|++. |       +..+..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  163 (251)
T 3m19_A           92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-P-------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS  163 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-C-------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcccccChhHhcccCCCCEEEcCCCcCCCc-C-------hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence            6666655555555566666666666655421 1       2223344445555555555444444444444444444444


Q ss_pred             cccccccCCccccCCCCCCEEECCCCcCCC
Q 002376          514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       514 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      +|+|++.++..|..+++|+.|+|++|++++
T Consensus       164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            444444444444444444444444444443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=7e-25  Score=242.70  Aligned_cols=271  Identities=16%  Similarity=0.199  Sum_probs=182.8

Q ss_pred             CCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCC--CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCC
Q 002376           56 SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNL--SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQG  133 (929)
Q Consensus        56 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  133 (929)
                      .-|.+|.++.|+..  .+..+|++++.+.   +..+..+  ++++.|++++|.+.+..+. +..+++|++|+|++|.+++
T Consensus        34 ~vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            45668999998743  4668899988776   3456666  8899999999999877665 5678999999999999886


Q ss_pred             C-cccccccccccceecccccccCCCCChhhhccCCCCcEEEcccc-ccCCCCCccccccCCCccCCCCcccEEEeecc-
Q 002376          134 E-LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKN-LLWGSIPPSIANLIPSDLSRLENLKVLDLTIN-  210 (929)
Q Consensus       134 ~-~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N-  210 (929)
                      . +|..+..+++|++|+|++|++++..+. .+..+++|++|+|++| .+++.       .++..+..+++|++|+|++| 
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~~  179 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEF-------ALQTLLSSCSRLDELNLSWCF  179 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHH-------HHHHHHHHCTTCCEEECCCCT
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHH-------HHHHHHhcCCCCCEEcCCCCC
Confidence            6 788888899999999999988754444 4778888888888888 45331       12334556778888888888 


Q ss_pred             cCCCc-cCCccccCC-CCceEEeeec--CCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCcc-C
Q 002376          211 RLAGT-VPSTIYNMT-SLVHLRLASN--QLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNL-L  285 (929)
Q Consensus       211 ~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l  285 (929)
                      .+++. ++..+..++ +|++|+|++|  .++.                        +.+|..+.++++|+.|++++|. +
T Consensus       180 ~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~------------------------~~l~~~~~~~~~L~~L~l~~~~~l  235 (336)
T 2ast_B          180 DFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------------------SDLSTLVRRCPNLVHLDLSDSVML  235 (336)
T ss_dssp             TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------------------HHHHHHHHHCTTCSEEECTTCTTC
T ss_pred             CcChHHHHHHHHhcccCCCEEEeCCCcccCCH------------------------HHHHHHHhhCCCCCEEeCCCCCcC
Confidence            77754 466677777 7777777777  3431                        1233344455556666666655 4


Q ss_pred             cCCccCCCCCCCccceecccccc-ccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCc
Q 002376          286 EGTLPPGLGNLPFLRTYNIGFNK-IVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNH  364 (929)
Q Consensus       286 ~~~~p~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~  364 (929)
                      ++..+..+..+++|++|++++|. +..    .   .+..+.++++|++|++++| ++   .+.+..+...+..|++++|+
T Consensus       236 ~~~~~~~l~~l~~L~~L~l~~~~~~~~----~---~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~  304 (336)
T 2ast_B          236 KNDCFQEFFQLNYLQHLSLSRCYDIIP----E---TLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSH  304 (336)
T ss_dssp             CGGGGGGGGGCTTCCEEECTTCTTCCG----G---GGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCC
T ss_pred             CHHHHHHHhCCCCCCEeeCCCCCCCCH----H---HHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEeccc
Confidence            44445555555555666555553 110    0   1124566778888888877 33   12344443357777778888


Q ss_pred             cccccCCCCCC
Q 002376          365 IYGKIPASIGR  375 (929)
Q Consensus       365 l~~~~p~~~~~  375 (929)
                      +++..|..++.
T Consensus       305 l~~~~~~~~~~  315 (336)
T 2ast_B          305 FTTIARPTIGN  315 (336)
T ss_dssp             SCCTTCSSCSS
T ss_pred             CccccCCcccc
Confidence            87777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.88  E-value=1.8e-22  Score=224.55  Aligned_cols=244  Identities=16%  Similarity=0.120  Sum_probs=184.3

Q ss_pred             CCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcc-
Q 002376           58 PCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELP-  136 (929)
Q Consensus        58 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-  136 (929)
                      .|+|..|.|+.            ++++ .||..+  .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| 
T Consensus         8 ~C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~   72 (350)
T 4ay9_X            8 HCSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA   72 (350)
T ss_dssp             EEETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT
T ss_pred             EeeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh
Confidence            37777777754            3455 677766  3689999999999996666789999999999999999987666 


Q ss_pred             cccccccccce-ecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeec-ccCCC
Q 002376          137 VNISKLTELKM-LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTI-NRLAG  214 (929)
Q Consensus       137 ~~~~~l~~L~~-L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~-N~l~~  214 (929)
                      ..|.++++|++ ++++.|+|+ .++++.|.++++|++|++++|++.+.        .+..+....++..|++.+ |++..
T Consensus        73 ~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~--------~~~~~~~~~~l~~l~l~~~~~i~~  143 (350)
T 4ay9_X           73 DVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHL--------PDVHKIHSLQKVLLDIQDNINIHT  143 (350)
T ss_dssp             TSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEEEEEEECCSSC--------CCCTTCCBSSCEEEEEESCTTCCE
T ss_pred             hHhhcchhhhhhhcccCCccc-ccCchhhhhccccccccccccccccC--------Cchhhcccchhhhhhhcccccccc
Confidence            56889988765 677789998 67777799999999999999988543        233455667788899875 67887


Q ss_pred             ccCCccccCC-CCceEEeeecCCCCcCCcccccCCCCcceeeccC-CcCCCCCCCcccccccccEEeccCccCcCCccCC
Q 002376          215 TVPSTIYNMT-SLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCF-NRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPG  292 (929)
Q Consensus       215 ~~p~~~~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  292 (929)
                      +.+..|..+. .++.|+|++|+|+ .+|..++. ..+|+.+++.+ |.++...++.|.++++|++|||++|+|+...+..
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~  221 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG  221 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS
T ss_pred             ccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh
Confidence            7777888775 6889999999998 78877776 56788888875 5555555567888899999999999998666666


Q ss_pred             CCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCC
Q 002376          293 LGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGN  338 (929)
Q Consensus       293 ~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N  338 (929)
                      |.+|++|+.+++.  .+..+         ..+.++++|+.++++++
T Consensus       222 ~~~L~~L~~l~~~--~l~~l---------P~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          222 LENLKKLRARSTY--NLKKL---------PTLEKLVALMEASLTYP  256 (350)
T ss_dssp             CTTCCEEECTTCT--TCCCC---------CCTTTCCSCCEEECSCH
T ss_pred             hccchHhhhccCC--CcCcC---------CCchhCcChhhCcCCCC
Confidence            7777777666552  23222         23556667777776544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.88  E-value=9.8e-25  Score=246.48  Aligned_cols=249  Identities=17%  Similarity=0.226  Sum_probs=152.7

Q ss_pred             CCCcccccccccEEeccCccCcCCcc----CCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCcc
Q 002376          265 IPGSLHNLTNIQIIRMTHNLLEGTLP----PGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQF  340 (929)
Q Consensus       265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  340 (929)
                      ++..+..+++|+.|+|++|.+++..+    ..|..+++|++|+|++|.+.                            ++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~----------------------------~l   75 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG----------------------------RV   75 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT----------------------------SC
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC----------------------------cc
Confidence            44555666777777777777765422    23444555555555444332                            22


Q ss_pred             ccccCchh-------hhccccccEEEecCCcccc----ccCCCCCCCCcccEEEeeCCCCCcccCcccc----CC-----
Q 002376          341 EGKIPESI-------GNFSNELSKLYLGGNHIYG----KIPASIGRLRSLTLLDLSYNSISGEIPIEIG----QL-----  400 (929)
Q Consensus       341 ~~~~p~~~-------~~~~~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~----~l-----  400 (929)
                      ++.+|..+       ..+. +|++|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+.    .+     
T Consensus        76 ~~~~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~  154 (386)
T 2ca6_A           76 KDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK  154 (386)
T ss_dssp             GGGSHHHHHHHHHHHTTCT-TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhhCC-cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhh
Confidence            23333332       2222 45555555555544    2444455555666666666665433332222    22     


Q ss_pred             ----CCCCEEEecCCcCC-CCCc---ccccCCCCCceecccCcccc--c---ccCcccccccccceecccCCcCCCCCCC
Q 002376          401 ----QGLQVLGLAGNEIP-GGIP---NSLANLKKLNQIDLSGNELT--G---EIPISFGNFQSLLSIDLSNNRINGNIPK  467 (929)
Q Consensus       401 ----~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~g~i~~  467 (929)
                          ++|++|+|++|+++ +.+|   ..+..+++|++|+|++|+++  |   ..|..+..+++|+.|+|++|.++..-  
T Consensus       155 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g--  232 (386)
T 2ca6_A          155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG--  232 (386)
T ss_dssp             HHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH--
T ss_pred             cccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH--
Confidence                66777777777765 3334   35566777777777777776  2   34446777777888888887774100  


Q ss_pred             CcccCCchhhhcccCccEEEecCCCCCCC----CCcchhc--CcCcceeecccccccc----cCCccc-cCCCCCCEEEC
Q 002376          468 GILRPLPEEISRLENVVTIDLSDNSLSGN----LPNSLKN--CKSLEELLMAYNQFSG----PIPNIV-AELKGLEVLDL  536 (929)
Q Consensus       468 ~~~~~~p~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L  536 (929)
                        ...+|..+..+++|+.|+|++|.+++.    +|..+..  +++|+.|+|++|.|++    .+|..+ .++++|++|+|
T Consensus       233 --~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l  310 (386)
T 2ca6_A          233 --SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL  310 (386)
T ss_dssp             --HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             --HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence              011266677778888888888888765    4566633  8889999999999987    477776 66899999999


Q ss_pred             CCCcCCCcCC
Q 002376          537 SSNKLSGSIP  546 (929)
Q Consensus       537 s~N~l~~~~p  546 (929)
                      ++|++++..|
T Consensus       311 ~~N~l~~~~~  320 (386)
T 2ca6_A          311 NGNRFSEEDD  320 (386)
T ss_dssp             TTSBSCTTSH
T ss_pred             cCCcCCcchh
Confidence            9999997664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.88  E-value=2e-22  Score=206.55  Aligned_cols=188  Identities=23%  Similarity=0.269  Sum_probs=150.4

Q ss_pred             CCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCC
Q 002376           55 SSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE  134 (929)
Q Consensus        55 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  134 (929)
                      ....|.|.+|.|+..+            ++ .+|..+  .++|++|+|++|++++..+..|+++++|++|+|++|++++.
T Consensus         3 ~~C~C~~~~v~c~~~~------------l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~   67 (208)
T 2o6s_A            3 SRCSCSGTTVECYSQG------------RT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL   67 (208)
T ss_dssp             TTCEEETTEEECCSSC------------CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC
T ss_pred             CCCEECCCEEEecCCC------------cc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc
Confidence            3456899999997643            22 345444  45899999999999977777899999999999999999987


Q ss_pred             cccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCC
Q 002376          135 LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG  214 (929)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~  214 (929)
                      .+..|.++++|++|+|++|+++ .+++..|.++++|++|+|++|++++        +.+..|..+++|++|+|++|++++
T Consensus        68 ~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~--------~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A           68 PNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQS--------LPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCC--------CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcCCCcCcc--------cCHhHhccCCcCCEEECCCCccce
Confidence            7778899999999999999998 5777778999999999999998754        233457788999999999999998


Q ss_pred             ccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCccccccc
Q 002376          215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTN  274 (929)
Q Consensus       215 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~  274 (929)
                      ..+..|..+++|++|+|++|.+.+.        +++|+.|++..|+++|.+|..++.+..
T Consensus       139 ~~~~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          139 VPDGVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCBCCC--------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             eCHHHhccCCCccEEEecCCCeecC--------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            8777888899999999999987643        456666677777777777766665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4.5e-23  Score=225.34  Aligned_cols=225  Identities=20%  Similarity=0.224  Sum_probs=186.5

Q ss_pred             cccEEEecCCccccccCC---CCCCCCcccEEEeeCCCCCcccCccc--cCCCCCCEEEecCCcCCCCCc----ccccCC
Q 002376          354 ELSKLYLGGNHIYGKIPA---SIGRLRSLTLLDLSYNSISGEIPIEI--GQLQGLQVLGLAGNEIPGGIP----NSLANL  424 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l  424 (929)
                      .++.+.+.++.++...-.   .+..+++|++|+|++|.+++..|..+  ..+++|++|+|++|.+++..+    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            478888888877532110   12234679999999999999999988  999999999999999998655    455689


Q ss_pred             CCCceecccCcccccccCcccccccccceecccCCcCCCC--CCCCcccCCchhhhcccCccEEEecCCCCCCCCCc---
Q 002376          425 KKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN--IPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPN---  499 (929)
Q Consensus       425 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~--i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~---  499 (929)
                      ++|++|+|++|++++..|..|.++++|++|+|++|++.+.  ++.      +..+..+++|++|+|++|+++. +|.   
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  217 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA------ALCPHKFPAIQNLALRNTGMET-PTGVCA  217 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT------TSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH------HHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence            9999999999999998889999999999999999998652  111      1224678899999999999973 333   


Q ss_pred             -chhcCcCcceeecccccccccCCccccCC---CCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCC
Q 002376          500 -SLKNCKSLEELLMAYNQFSGPIPNIVAEL---KGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIF  575 (929)
Q Consensus       500 -~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  575 (929)
                       .++++++|++|+|++|+|++.+|..+..+   ++|++|+|++|+|+ .+|..+.  ++|++|+|++|++++. |....+
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l  293 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDEL  293 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSC
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhC
Confidence             35788999999999999999888888777   69999999999999 6787775  8999999999999985 444567


Q ss_pred             CCCCcccccCCCCC
Q 002376          576 RNMSNVHLKGNPKL  589 (929)
Q Consensus       576 ~~l~~l~l~~N~~~  589 (929)
                      ++++.+++++|+..
T Consensus       294 ~~L~~L~L~~N~l~  307 (310)
T 4glp_A          294 PEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCSCEECSSTTTS
T ss_pred             CCccEEECcCCCCC
Confidence            89999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.88  E-value=2.5e-23  Score=243.34  Aligned_cols=207  Identities=25%  Similarity=0.321  Sum_probs=168.7

Q ss_pred             CCCCCCCCCCC-----CCcce-eeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCc
Q 002376           49 LSYWNPSSSPC-----TWPGV-ICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLR  122 (929)
Q Consensus        49 l~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  122 (929)
                      +.+|..+.++|     .|.|+ .|..  .+++.|+|++|++++ +|+.+.  ++|++|+|++|+|+ .+|   ..+++|+
T Consensus        33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE  103 (571)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred             HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence            45676666778     79999 6864  479999999999997 888774  89999999999999 777   5579999


Q ss_pred             EEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcc
Q 002376          123 VLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL  202 (929)
Q Consensus       123 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L  202 (929)
                      +|+|++|+|++ +|. |.+  +|++|+|++|+|++ +|.    .+++|++|+|++|++++ +|.           .+++|
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~-----------~l~~L  162 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE-----------LPTSL  162 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC-----------CCTTC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC-----------cCCCc
Confidence            99999999997 777 766  99999999999996 776    68999999999999865 442           36799


Q ss_pred             cEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCc-------ceeeccCCcCCCCCCCcccccccc
Q 002376          203 KVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL-------LDFIYCFNRFTGKIPGSLHNLTNI  275 (929)
Q Consensus       203 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L-------~~l~l~~N~l~~~~p~~~~~l~~L  275 (929)
                      ++|+|++|+|++ +|. |.  ++|++|+|++|+|+ .+|. +..   +|       +.|++++|+++. +|..+..+++|
T Consensus       163 ~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L  232 (571)
T 3cvr_A          163 EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRITH-IPENILSLDPT  232 (571)
T ss_dssp             CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEEECCSSCCCC-CCGGGGGSCTT
T ss_pred             CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEEecCCCccee-cCHHHhcCCCC
Confidence            999999999997 666 65  89999999999998 7777 433   55       888888888874 67777778888


Q ss_pred             cEEeccCccCcCCccCCCCC
Q 002376          276 QIIRMTHNLLEGTLPPGLGN  295 (929)
Q Consensus       276 ~~L~Ls~N~l~~~~p~~~~~  295 (929)
                      +.|+|++|.|++.+|..|..
T Consensus       233 ~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          233 CTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EEEECCSSSCCHHHHHHHHH
T ss_pred             CEEEeeCCcCCCcCHHHHHH
Confidence            88888888888777755443

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=3.1e-24  Score=251.32  Aligned_cols=161  Identities=19%  Similarity=0.162  Sum_probs=119.9

Q ss_pred             CCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          664 SHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ...++||+|+||+||+|...+                      ..++|.+|++++++++||||+++..++...+     .
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~-----~  413 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLD-----N  413 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETT-----T
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCC-----c
Confidence            446789999999999775431                      1345889999999999999996655554322     2


Q ss_pred             EEEEEEecCCCCccccccccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCC
Q 002376          722 LALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSS  801 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~  801 (929)
                      .|+||||+++|+|.++++....++.|++.||+|||+.   +|+||||||+|||+++  .+||+|||+|+...........
T Consensus       414 ~~lVmE~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~  488 (540)
T 3en9_A          414 KRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVD  488 (540)
T ss_dssp             TEEEEECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCCccccccc
Confidence            5999999999999999988777789999999999998   9999999999999999  9999999999976432110000


Q ss_pred             -ccccceeccccccccccccCC--CCCCCCCCCCCC
Q 002376          802 -ISSTHVFMGSIGYVPPEYGLG--ERPSTAGDVPTS  834 (929)
Q Consensus       802 -~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DV~s~  834 (929)
                       .......+||+.|||||++..  ..|+..+|+|+.
T Consensus       489 ~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~  524 (540)
T 3en9_A          489 LIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEI  524 (540)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHH
T ss_pred             hhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHH
Confidence             001235689999999999876  557778888874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=7.6e-24  Score=234.37  Aligned_cols=232  Identities=17%  Similarity=0.210  Sum_probs=141.1

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccc-cCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK-IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL  406 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  406 (929)
                      ++++.|++++|.+.+..+. ++.+. +|++|+|++|.+++. +|..+..+++|++|+|++|.+++..|..++.+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~-~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCB-CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCC-CCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence            4555555555555544433 33333 566666666666544 55556666666666666666666666666666667777


Q ss_pred             EecCC-cCCC-CCcccccCCCCCceecccCc-ccccc-cCccccccc-ccceecccCC--cCCCCCCCCcccCCchhhhc
Q 002376          407 GLAGN-EIPG-GIPNSLANLKKLNQIDLSGN-ELTGE-IPISFGNFQ-SLLSIDLSNN--RINGNIPKGILRPLPEEISR  479 (929)
Q Consensus       407 ~L~~N-~l~~-~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~g~i~~~~~~~~p~~~~~  479 (929)
                      ++++| .+++ .++..+.++++|++|++++| .+++. ++..+..++ +|++|++++|  .++.       ..+|..+..
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-------~~l~~~~~~  220 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK-------SDLSTLVRR  220 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-------HHHHHHHHH
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH-------HHHHHHHhh
Confidence            77666 4554 24555666677777777777 66643 455566666 7777777777  3331       112555666


Q ss_pred             ccCccEEEecCCC-CCCCCCcchhcCcCcceeeccccc-ccccCCccccCCCCCCEEECCCCcCCCcCCcccccCC-CCC
Q 002376          480 LENVVTIDLSDNS-LSGNLPNSLKNCKSLEELLMAYNQ-FSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ-ALR  556 (929)
Q Consensus       480 l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~  556 (929)
                      +++|+.|+|++|. +++..+..+..+++|++|++++|. ++......++.+++|+.|++++| ++   ...+..+. .|+
T Consensus       221 ~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~  296 (336)
T 2ast_B          221 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALP  296 (336)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHST
T ss_pred             CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCc
Confidence            7777777777777 665666677777777777777774 22221224666777777777777 32   22334442 366


Q ss_pred             eEeCCCCcCcccCCCC
Q 002376          557 SLNLTFNNLEGVVPSE  572 (929)
Q Consensus       557 ~L~Ls~N~l~~~~p~~  572 (929)
                      .|++++|++++..|..
T Consensus       297 ~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          297 HLQINCSHFTTIARPT  312 (336)
T ss_dssp             TSEESCCCSCCTTCSS
T ss_pred             ceEEecccCccccCCc
Confidence            6667777777776643

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=2e-22  Score=219.74  Aligned_cols=189  Identities=25%  Similarity=0.352  Sum_probs=88.4

Q ss_pred             ccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccC
Q 002376          355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG  434 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  434 (929)
                      |++|++++|.++. +| .+..+++|++|+|++|++++..+  +..+++|++|+|++|++++. + .+..+++|++|+|++
T Consensus        43 L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~  116 (308)
T 1h6u_A           43 ITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTS  116 (308)
T ss_dssp             CCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTT
T ss_pred             cCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCC
Confidence            4444444444432 12 23444444444444444443222  44444444444444444432 1 344444455555555


Q ss_pred             cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccc
Q 002376          435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY  514 (929)
Q Consensus       435 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~  514 (929)
                      |++++. +. +..+++|+.|++++|++++.         +. +..+++|+.|+|++|++++..+  +..+++|+.|++++
T Consensus       117 n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~  182 (308)
T 1h6u_A          117 TQITDV-TP-LAGLSNLQVLYLDLNQITNI---------SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADD  182 (308)
T ss_dssp             SCCCCC-GG-GTTCTTCCEEECCSSCCCCC---------GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             CCCCCc-hh-hcCCCCCCEEECCCCccCcC---------cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCC
Confidence            544432 11 44445555555555554421         11 4444555555555555553222  55555555555555


Q ss_pred             ccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          515 NQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       515 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      |++++..+  +..+++|+.|+|++|++++..|  +..+++|+.|++++|++++
T Consensus       183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             CccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            55554332  4555555555555555554332  4555555555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=7.2e-22  Score=215.37  Aligned_cols=199  Identities=24%  Similarity=0.350  Sum_probs=171.6

Q ss_pred             ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCC
Q 002376          323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG  402 (929)
Q Consensus       323 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  402 (929)
                      .+..+++|++|++++|.++ .+| .+..+. +|++|+|++|++++..+  +..+++|++|+|++|++++.  ..+..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~-~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~  108 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVT-TIE-GVQYLN-NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQS  108 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCC-CCT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTT
T ss_pred             cHHHcCCcCEEEeeCCCcc-Cch-hhhccC-CCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCC
Confidence            3456789999999999998 455 577776 79999999999997655  99999999999999999864  36899999


Q ss_pred             CCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccC
Q 002376          403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN  482 (929)
Q Consensus       403 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~  482 (929)
                      |++|++++|++++. +. +..+++|++|++++|++++..+  +..+++|+.|++++|++++.         +. +..+++
T Consensus       109 L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~-l~~l~~  174 (308)
T 1h6u_A          109 IKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL---------TP-LANLSK  174 (308)
T ss_dssp             CCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---------GG-GTTCTT
T ss_pred             CCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC---------hh-hcCCCC
Confidence            99999999999874 43 8999999999999999987554  88999999999999999752         33 788899


Q ss_pred             ccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCc
Q 002376          483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS  547 (929)
Q Consensus       483 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  547 (929)
                      |+.|+|++|++++..+  +..+++|++|+|++|++++..|  +..+++|+.|+|++|++++ .|.
T Consensus       175 L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~-~~~  234 (308)
T 1h6u_A          175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-QPV  234 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC-CCE
T ss_pred             CCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec-CCe
Confidence            9999999999996544  8899999999999999997664  8999999999999999985 443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=2.3e-21  Score=215.49  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=66.2

Q ss_pred             CcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcce-eeccCCcCCCCCCCcccccccccEE
Q 002376          200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD-FIYCFNRFTGKIPGSLHNLTNIQII  278 (929)
Q Consensus       200 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-l~l~~N~l~~~~p~~~~~l~~L~~L  278 (929)
                      ++++.|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+|...+..++++.+ +.+..|++++..|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            356677777777776555667777777777777777766666666665666544 3444566666666667777777777


Q ss_pred             eccCccCcCCccCCCCCCCccceecc
Q 002376          279 RMTHNLLEGTLPPGLGNLPFLRTYNI  304 (929)
Q Consensus       279 ~Ls~N~l~~~~p~~~~~l~~L~~L~L  304 (929)
                      ++++|+|++..+..+.....+..+++
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l  135 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDI  135 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred             cccccccccCCchhhcccchhhhhhh
Confidence            77777776555444444444444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=4.1e-21  Score=196.74  Aligned_cols=181  Identities=21%  Similarity=0.217  Sum_probs=126.4

Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      +.++.+++.++ .+|..+.   .+|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++
T Consensus        10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            45666777766 4554432   3678888888888776666777888888888888888766666677778888888888


Q ss_pred             CcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecC
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD  490 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~  490 (929)
                      |++++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..        +..+..+++|+.|+|++
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP--------DGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--------TTTTTTCTTCCEEECCS
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC--------HHHhccCCCccEEEecC
Confidence            8887766666777777888888888777666666777777777777777776422        23355666777777777


Q ss_pred             CCCCCCCCcchhcCcCcceeecccccccccCCccccCCCC
Q 002376          491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKG  530 (929)
Q Consensus       491 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  530 (929)
                      |.+.+.       +++|++|+++.|+++|.+|..++.++.
T Consensus       158 N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          158 NPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CCBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CCeecC-------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            766543       345677777777777777766665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.84  E-value=1.1e-20  Score=196.66  Aligned_cols=165  Identities=25%  Similarity=0.294  Sum_probs=140.9

Q ss_pred             CCCCCCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCC
Q 002376           51 YWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNN  130 (929)
Q Consensus        51 ~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  130 (929)
                      -|..+.+.|+|.+|.|+...            + +.+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~~------------l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSKR------------H-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTTSC------------C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccCCC------------c-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            35557788999999997532            2 25666554  899999999999999999999999999999999999


Q ss_pred             CCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecc
Q 002376          131 LQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN  210 (929)
Q Consensus       131 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N  210 (929)
                      |++..+..|..+++|++|+|++|+|+ .+++..|..+++|++|+|++|+++ .+        |..+..+++|++|+|++|
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~l--------p~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-EL--------PRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SC--------CTTGGGCTTCSEEECCSS
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-cc--------CcccccCCCCCEEECCCC
Confidence            99777788899999999999999998 577777899999999999999885 33        445677899999999999


Q ss_pred             cCCCccCCccccCCCCceEEeeecCCCCcC
Q 002376          211 RLAGTVPSTIYNMTSLVHLRLASNQLGGEI  240 (929)
Q Consensus       211 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i  240 (929)
                      +|++..+..|..+++|++|+|++|.+.+..
T Consensus       146 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          146 QLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999888888999999999999999887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=1.1e-20  Score=221.14  Aligned_cols=188  Identities=24%  Similarity=0.344  Sum_probs=135.5

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      +|+.|+|++|++++ +|..++   ++|++|+|++|+|+ .+|   ..+++|++|+|++|+|++ +|. +..  +|++|+|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            78888888888885 776553   36888888888888 455   446788888888888886 666 554  7888888


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                      ++|+|++ +|.   .+++|++|+|++|+|++ +|.   .+++|+.|+|++|+|++ +|        . +.  ++|+.|||
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp--------~-l~--~~L~~L~L  187 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP--------E-LP--ESLEALDV  187 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC--------C-CC--TTCCEEEC
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc--------h-hh--CCCCEEEC
Confidence            8888876 554   56788888888888875 554   46778888888888775 43        2 22  67888888


Q ss_pred             cCCCCCCCCCcchhcCcCc-------ceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCC
Q 002376          489 SDNSLSGNLPNSLKNCKSL-------EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQ  553 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  553 (929)
                      ++|+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..+..+.
T Consensus       188 s~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          188 STNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             CSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             cCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            888887 5555 543  56       77777777777 4566666677777777777777777777666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.83  E-value=1.3e-21  Score=237.50  Aligned_cols=231  Identities=20%  Similarity=0.203  Sum_probs=129.1

Q ss_pred             CChhhHHHHHHHHhhcCCCCCCCCCCCCC-CCCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEee
Q 002376           25 GINTDKEALMSFKSQISQESPSSPLSYWN-PSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQ  103 (929)
Q Consensus        25 ~~~~~~~aLl~~k~~~~~~~~~~~l~~w~-~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls  103 (929)
                      ..+.+++||+++..+.... ....-..|. .....+.|.++.++.  .+++.++|.++++.+ ++..+     |+.++|+
T Consensus       129 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls  199 (727)
T 4b8c_D          129 LVDCTKQALMEMADTLTDS-KTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDE-ANQAL-----LQHKKLS  199 (727)
T ss_dssp             ---CCCHHHHHHHHHHHHH-HTTC--------------------------------------------------------
T ss_pred             ccccchhhhhhhhhhcccc-cCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCc-chhhH-----hhcCccC
Confidence            3468899999999887443 223334564 334567899988875  579999999998886 34443     3444444


Q ss_pred             cCCCCC---------CCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEE
Q 002376          104 NNKLSG---------NLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLN  174 (929)
Q Consensus       104 ~N~l~~---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~  174 (929)
                      .|.|.+         ..|..|..+++|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+|.. |++|++|++|+
T Consensus       200 ~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~-~~~l~~L~~L~  276 (727)
T 4b8c_D          200 QYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAE-IKNLSNLRVLD  276 (727)
T ss_dssp             ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGG-GGGGTTCCEEE
T ss_pred             cccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChh-hhCCCCCCEEe
Confidence            444433         45788999999999999999998 67777889999999999999998 78866 89999999999


Q ss_pred             ccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCccee
Q 002376          175 FGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDF  254 (929)
Q Consensus       175 Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l  254 (929)
                      |++|+|+ .+        |..|+.|++|++|+|++|.|+ .+|..|.++++|++|+|++|.|++.+|..+......+..+
T Consensus       277 Ls~N~l~-~l--------p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l  346 (727)
T 4b8c_D          277 LSHNRLT-SL--------PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF  346 (727)
T ss_dssp             CTTSCCS-SC--------CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred             CcCCcCC-cc--------ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence            9999885 33        455677899999999999997 6677899999999999999999988777665422223446


Q ss_pred             eccCCcCCCCCCCcccccccccEEeccCc
Q 002376          255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHN  283 (929)
Q Consensus       255 ~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N  283 (929)
                      ++.+|.+++.+|..      |+.|++++|
T Consensus       347 ~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          347 YLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             HHHHCCCCCCCCCC---------------
T ss_pred             hhccCcccCcCccc------cceeEeecc
Confidence            77888888877754      445566665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=7.3e-20  Score=188.95  Aligned_cols=159  Identities=25%  Similarity=0.323  Sum_probs=137.4

Q ss_pred             CCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCC
Q 002376           55 SSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE  134 (929)
Q Consensus        55 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  134 (929)
                      ....|.|..|.|..            ++++ .+|..+.  ++|++|+|++|+|++..+..|..+++|++|+|++|+|++.
T Consensus         7 ~~C~C~~~~v~c~~------------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~   71 (220)
T 2v9t_B            7 AACTCSNNIVDCRG------------KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL   71 (220)
T ss_dssp             TTSEEETTEEECTT------------SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE
T ss_pred             CCCEECCCEEEcCC------------CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc
Confidence            33446777666654            4454 5676665  7899999999999988888999999999999999999988


Q ss_pred             cccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCC
Q 002376          135 LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG  214 (929)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~  214 (929)
                      .|..|.++++|++|+|++|+|+ .+|+..|.++++|++|+|++|++++.        .|..|..+++|++|+|++|+|++
T Consensus        72 ~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~--------~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           72 APDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCL--------RVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC--------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEe--------CHHHcCCCCCCCEEECCCCcCCE
Confidence            8999999999999999999998 68888899999999999999988553        45567889999999999999999


Q ss_pred             ccCCccccCCCCceEEeeecCCC
Q 002376          215 TVPSTIYNMTSLVHLRLASNQLG  237 (929)
Q Consensus       215 ~~p~~~~~l~~L~~L~Ls~N~l~  237 (929)
                      ..+..|..+++|++|+|++|.+.
T Consensus       143 ~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          143 IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ECHHHHhCCCCCCEEEeCCCCcC
Confidence            88888999999999999999886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.80  E-value=4.6e-20  Score=190.48  Aligned_cols=136  Identities=24%  Similarity=0.277  Sum_probs=81.4

Q ss_pred             CceecccCcccccccC-cccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCc
Q 002376          427 LNQIDLSGNELTGEIP-ISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK  505 (929)
Q Consensus       427 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~  505 (929)
                      +++|+|++|++++..| ..|.++++|+.|+|++|+|++..        +..|..+++|++|+|++|++++..|..|.+++
T Consensus        34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  105 (220)
T 2v70_A           34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE--------EGAFEGASGVNEILLTSNRLENVQHKMFKGLE  105 (220)
T ss_dssp             CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC--------TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred             CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC--------HHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence            3444555555544322 23445555555555555554321        23444555556666666666655556666666


Q ss_pred             CcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          506 SLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       506 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      +|++|+|++|+|++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..+
T Consensus       106 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          106 SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            67777777777766666667777777777777777776666677777777777777777765443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.80  E-value=9.3e-20  Score=203.40  Aligned_cols=74  Identities=31%  Similarity=0.351  Sum_probs=35.1

Q ss_pred             ccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccc---cCCCCCCEEECCCCcCCCcCCcccccCC
Q 002376          480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIV---AELKGLEVLDLSSNKLSGSIPSDLQNLQ  553 (929)
Q Consensus       480 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  553 (929)
                      +++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..+..|   ..+++|+.|||++|+|++..+..+..++
T Consensus       111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~  187 (361)
T 2xot_A          111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP  187 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSC
T ss_pred             CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhcc
Confidence            3344444444444443444445555555555555555554333333   3455666666666666543334444443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.9e-19  Score=192.97  Aligned_cols=168  Identities=26%  Similarity=0.342  Sum_probs=86.9

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      +|+.|++++|.+... + .+..+++|++|+|++|++++..+  +..+++|++|++++|++++ +| .+.           
T Consensus        47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~-----------  109 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLK-----------  109 (291)
T ss_dssp             TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGT-----------
T ss_pred             cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhc-----------
Confidence            455555555555433 2 24555555555555555554332  4455555555555555543 11 244           


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecc
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA  513 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  513 (929)
                                   .+++|+.|++++|++++          ...+..+++|+.|++++|++++.  ..+..+++|+.|+|+
T Consensus       110 -------------~l~~L~~L~L~~n~i~~----------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A          110 -------------DLKKLKSLSLEHNGISD----------INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             -------------TCTTCCEEECTTSCCCC----------CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             -------------cCCCCCEEECCCCcCCC----------ChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence                         44455555555554442          11344445555555555555543  345555566666666


Q ss_pred             cccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       514 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      +|++++..|  +..+++|+.|+|++|++++ +| .+..+++|+.|++++|+++.
T Consensus       165 ~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          165 DNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            666654443  5556666666666666654 23 25556666666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.79  E-value=3.5e-19  Score=183.85  Aligned_cols=153  Identities=24%  Similarity=0.336  Sum_probs=79.2

Q ss_pred             cEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCC
Q 002376          380 TLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNN  459 (929)
Q Consensus       380 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  459 (929)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|+|++..+..|..+++|++|+|++|++++..|..|.++           
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-----------   79 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-----------   79 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC-----------
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC-----------
Confidence            34555555555 3343332  344555555555444444444444444444444444444444444444           


Q ss_pred             cCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCC
Q 002376          460 RINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN  539 (929)
Q Consensus       460 ~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  539 (929)
                                           ++|++|+|++|++++..+..|.++++|++|+|++|+|++..|..|..+++|++|+|++|
T Consensus        80 ---------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  138 (220)
T 2v9t_B           80 ---------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN  138 (220)
T ss_dssp             ---------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ---------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC
Confidence                                 44444444444444443444555555555555555555555555666666666666666


Q ss_pred             cCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          540 KLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       540 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      +|++..+..|..+++|+.|+|++|++.+
T Consensus       139 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          139 KLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            6665555555555566666655555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.4e-19  Score=193.64  Aligned_cols=145  Identities=21%  Similarity=0.358  Sum_probs=111.0

Q ss_pred             ccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC
Q 002376          298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR  377 (929)
Q Consensus       298 ~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~  377 (929)
                      .+..+.++.+.+...         ..+..+++|++|++++|.++. +| .+..+. +|++|+|++|++++..+  +.+++
T Consensus        25 ~~~~~~l~~~~~~~~---------~~~~~l~~L~~L~l~~~~i~~-~~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~   90 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDA---------VTQNELNSIDQIIANNSDIKS-VQ-GIQYLP-NVTKLFLNGNKLTDIKP--LANLK   90 (291)
T ss_dssp             HHHHHHTTCSCTTSE---------ECHHHHHTCCEEECTTSCCCC-CT-TGGGCT-TCCEEECCSSCCCCCGG--GTTCT
T ss_pred             HHHHHHhcCCCcccc---------cchhhcCcccEEEccCCCccc-Ch-hHhcCC-CCCEEEccCCccCCCcc--cccCC
Confidence            344556666655432         335567899999999999984 44 467766 89999999999998665  99999


Q ss_pred             cccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceeccc
Q 002376          378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLS  457 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  457 (929)
                      +|++|+|++|++++ +| .+..+++|++|++++|++++.  ..+..+++|++|++++|++++.  ..+..+++|+.|+++
T Consensus        91 ~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~  164 (291)
T 1h6t_A           91 NLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  164 (291)
T ss_dssp             TCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             CCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEcc
Confidence            99999999999986 33 489999999999999999864  4577778888888888877753  345566666666666


Q ss_pred             CCcCC
Q 002376          458 NNRIN  462 (929)
Q Consensus       458 ~N~l~  462 (929)
                      +|+++
T Consensus       165 ~N~l~  169 (291)
T 1h6t_A          165 DNQIS  169 (291)
T ss_dssp             SSCCC
T ss_pred             CCccc
Confidence            66655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.79  E-value=3.4e-19  Score=183.96  Aligned_cols=155  Identities=24%  Similarity=0.244  Sum_probs=105.4

Q ss_pred             EEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCc-ccccCCCCCceecccCcccccccCcccccccccceecccCC
Q 002376          381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP-NSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNN  459 (929)
Q Consensus       381 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  459 (929)
                      .+++++|.++ .+|..+.  ..+++|+|++|+|++..| ..|..+++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            4444444444 2333321  234455555555554433 34566666666666666666666666777777777777777


Q ss_pred             cCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCC
Q 002376          460 RINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN  539 (929)
Q Consensus       460 ~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  539 (929)
                      +|++..        |..+..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus        92 ~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A           92 RLENVQ--------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             CCCCCC--------GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             ccCccC--------HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            776432        445666777778888888888777888888888888889888888888888888999999999999


Q ss_pred             cCCCcCC
Q 002376          540 KLSGSIP  546 (929)
Q Consensus       540 ~l~~~~p  546 (929)
                      .+++..+
T Consensus       164 ~l~c~c~  170 (220)
T 2v70_A          164 PFNCNCY  170 (220)
T ss_dssp             CEECSGG
T ss_pred             CCcCCCc
Confidence            8886544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.79  E-value=2.6e-19  Score=199.76  Aligned_cols=179  Identities=22%  Similarity=0.242  Sum_probs=128.4

Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCC-CCCcccEEEeeCCCCCcccCccccCCCCCCEEEec
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG-RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA  409 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  409 (929)
                      +.+++++|+++ .+|..+.   ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            57888888887 5776543   3688888888888888788787 88888888888888887777778888888888888


Q ss_pred             CCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEec
Q 002376          410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS  489 (929)
Q Consensus       410 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs  489 (929)
                      +|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++ +|...+.    .+..+++|+.|||+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~----~~~~l~~L~~L~L~  171 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIK----DGNKLPKLMLLDLS  171 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC--------CTTCCEEECC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhc----CcccCCcCCEEECC
Confidence            888887777778888888888888888887777788888888888888888763 3211110    01345666666666


Q ss_pred             CCCCCCCCCcchhcCcCc--ceeeccccccc
Q 002376          490 DNSLSGNLPNSLKNCKSL--EELLMAYNQFS  518 (929)
Q Consensus       490 ~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l~  518 (929)
                      +|+|++..+..|..++.+  +.|+|++|.+.
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            666665444555555542  45555555543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=1.7e-19  Score=213.40  Aligned_cols=190  Identities=23%  Similarity=0.320  Sum_probs=109.3

Q ss_pred             ccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcccc
Q 002376          275 IQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNE  354 (929)
Q Consensus       275 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~  354 (929)
                      +..+++..+.+....+  +..|++|+.|++++|.|..+         ..+..+++|+.|+|++|++++..|  +..+. +
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l---------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~   88 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV---------QGIQYLPNVTKLFLNGNKLTDIKP--LTNLK-N   88 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC---------TTGGGCTTCCEEECTTSCCCCCGG--GGGCT-T
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC---------hHHccCCCCCEEEeeCCCCCCChh--hccCC-C
Confidence            3444444444443322  34455555555555555433         234556666666666666664333  55554 5


Q ss_pred             ccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccC
Q 002376          355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG  434 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  434 (929)
                      |+.|+|++|.|.+.  ..+..+++|++|+|++|+|++.  ..+..+++|+.|+|++|+|++.  ..+..+++|+.|+|++
T Consensus        89 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~  162 (605)
T 1m9s_A           89 LGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED  162 (605)
T ss_dssp             CCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred             CCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence            66666666666642  2566666777777777766642  3466666666666666666654  4566666666666666


Q ss_pred             cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCC
Q 002376          435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN  496 (929)
Q Consensus       435 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~  496 (929)
                      |+|++..|  +..+++|+.|+|++|+|++ +         ..+..+++|+.|+|++|.+++.
T Consensus       163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l---------~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          163 NQISDIVP--LAGLTKLQNLYLSKNHISD-L---------RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SCCCCCGG--GTTCTTCCEEECCSSCCCB-C---------GGGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCCchh--hccCCCCCEEECcCCCCCC-C---------hHHccCCCCCEEEccCCcCcCC
Confidence            66665544  5666666666666666653 1         1345555666666666665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.78  E-value=7.7e-22  Score=232.17  Aligned_cols=206  Identities=20%  Similarity=0.135  Sum_probs=139.1

Q ss_pred             cCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCC
Q 002376          324 LTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL  403 (929)
Q Consensus       324 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  403 (929)
                      +...++|+.|+|++|+++ .+|+.++.+. +|+.|++++|......|.           .+..+.+.+..|..++.+++|
T Consensus       345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L  411 (567)
T 1dce_A          345 SATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTL  411 (567)
T ss_dssp             CSTTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHH
T ss_pred             cccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhc
Confidence            355678888888888887 7888888887 688888877652111111           011223445666667777777


Q ss_pred             CEEE-ecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccC
Q 002376          404 QVLG-LAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLEN  482 (929)
Q Consensus       404 ~~L~-L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~  482 (929)
                      +.|+ ++.|.+           ..|+.+.+++|.++...+.      .|+.|+|++|+|++ +        |. ++.+++
T Consensus       412 ~~L~~l~~n~~-----------~~L~~l~l~~n~i~~l~~~------~L~~L~Ls~n~l~~-l--------p~-~~~l~~  464 (567)
T 1dce_A          412 KAVDPMRAAYL-----------DDLRSKFLLENSVLKMEYA------DVRVLHLAHKDLTV-L--------CH-LEQLLL  464 (567)
T ss_dssp             HHHCGGGHHHH-----------HHHHHHHHHHHHHHHHHHT------TCSEEECTTSCCSS-C--------CC-GGGGTT
T ss_pred             ccCcchhhccc-----------chhhhhhhhcccccccCcc------CceEEEecCCCCCC-C--------cC-cccccc
Confidence            7776 555544           2455566666666643221      36777777777764 2        43 667777


Q ss_pred             ccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcC-CcccccCCCCCeEeCC
Q 002376          483 VVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSI-PSDLQNLQALRSLNLT  561 (929)
Q Consensus       483 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls  561 (929)
                      |+.|+|++|+|+ .+|..|+++++|+.|+|++|+|++ +| .++.+++|++|+|++|+|++.+ |..+..+++|+.|+|+
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            777777777777 667777777777777777777775 45 6777777777777777777665 7777777777777777


Q ss_pred             CCcCcccCCCC
Q 002376          562 FNNLEGVVPSE  572 (929)
Q Consensus       562 ~N~l~~~~p~~  572 (929)
                      +|++++.+|..
T Consensus       542 ~N~l~~~~~~~  552 (567)
T 1dce_A          542 GNSLCQEEGIQ  552 (567)
T ss_dssp             TSGGGGSSSCT
T ss_pred             CCcCCCCccHH
Confidence            77777776644

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.78  E-value=6.6e-19  Score=208.38  Aligned_cols=169  Identities=30%  Similarity=0.385  Sum_probs=98.8

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      .|+.|++++|.|... | .+..+++|+.|+|++|+|++..|  +..+++|+.|+|++|.|++ +| .+..+++|+.|+|+
T Consensus        44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE  117 (605)
T ss_dssp             TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred             CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence            466666666665532 2 35566666666666666665433  5566666666666666654 22 45666666666666


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecc
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA  513 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  513 (929)
                      +|++++.  ..+..+++|+.|+|++|+|++.          ..+..+++|+.|+|++|++++..|  +..+++|+.|+|+
T Consensus       118 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l----------~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls  183 (605)
T 1m9s_A          118 HNGISDI--NGLVHLPQLESLYLGNNKITDI----------TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS  183 (605)
T ss_dssp             TSCCCCC--GGGGGCTTCSEEECCSSCCCCC----------GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCCCCC--ccccCCCccCEEECCCCccCCc----------hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECc
Confidence            6666542  2355566666666666666531          234555666666666666665444  5666666666666


Q ss_pred             cccccccCCccccCCCCCCEEECCCCcCCCc
Q 002376          514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSGS  544 (929)
Q Consensus       514 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  544 (929)
                      +|+|++. | .+..+++|+.|+|++|++++.
T Consensus       184 ~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          184 KNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             SSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             CCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence            6666643 2 456666666666666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.77  E-value=9.1e-20  Score=221.27  Aligned_cols=191  Identities=23%  Similarity=0.234  Sum_probs=109.8

Q ss_pred             EecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccc
Q 002376          359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELT  438 (929)
Q Consensus       359 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  438 (929)
                      +++.|.+. ..|..|..+++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++|||++|+|+
T Consensus       207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  283 (727)
T 4b8c_D          207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT  283 (727)
T ss_dssp             ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred             ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence            44445554 55777788888888888888887 56766778888888888888887 67777888888888888888888


Q ss_pred             cccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcC-cceeecccccc
Q 002376          439 GEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS-LEELLMAYNQF  517 (929)
Q Consensus       439 ~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l  517 (929)
                       .+|..|+++++|++|+|++|.|+ .|        |..|+.+++|+.|+|++|.|++.+|..+..+.. +..|+|++|.+
T Consensus       284 -~lp~~~~~l~~L~~L~L~~N~l~-~l--------p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          284 -SLPAELGSCFQLKYFYFFDNMVT-TL--------PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             -SCCSSGGGGTTCSEEECCSSCCC-CC--------CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             -ccChhhcCCCCCCEEECCCCCCC-cc--------ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence             66888888888888888888875 33        556777888888888888888888877765532 23477888888


Q ss_pred             cccCCccccCCCCCCEEECCCC--------cCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          518 SGPIPNIVAELKGLEVLDLSSN--------KLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       518 ~~~~p~~~~~l~~L~~L~Ls~N--------~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      +|.+|.      .|+.|++++|        .|.+..+..+.++..+....+++|-+.+.
T Consensus       354 ~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          354 EIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             CCCCCC------C-----------------------------------------CCCGG
T ss_pred             cCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence            887775      3455667666        34444444555566666667777766544

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.77  E-value=1.3e-19  Score=194.21  Aligned_cols=136  Identities=18%  Similarity=0.088  Sum_probs=108.3

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC---------------------------------cHHHHHHHHHHHHccC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG---------------------------------SWKSFIAECETLRNVR  700 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~---------------------------------~~~~~~~E~~~l~~l~  700 (929)
                      ..+......|+..+.||+|+||.||+|.+..                                 ....+.+|++++++++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            3445555667778999999999999987530                                 1345889999999999


Q ss_pred             CccccceeeecccCCCCCcceEEEEEEecCCCCcccccc--ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC
Q 002376          701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIH--GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE  778 (929)
Q Consensus       701 Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~--~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~  778 (929)
                        | +++.+++..      ...|+||||+++|+|.+ +.  ....++.|++.||+|||+.   +|+||||||+|||++ +
T Consensus       163 --~-~~v~~~~~~------~~~~lvmE~~~g~~L~~-l~~~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl~-~  228 (282)
T 1zar_A          163 --G-LAVPKVYAW------EGNAVLMELIDAKELYR-VRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVS-E  228 (282)
T ss_dssp             --T-SSSCCEEEE------ETTEEEEECCCCEEGGG-CCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE-T
T ss_pred             --C-CCcCeEEec------cceEEEEEecCCCcHHH-cchhhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEEE-C
Confidence              4 666665522      23599999999999999 43  2234578999999999998   999999999999999 9


Q ss_pred             CceEEeccccccccccccCCCCCccccceeccccccccccccCC
Q 002376          779 MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG  822 (929)
Q Consensus       779 ~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  822 (929)
                      +.+||+|||+|+.                   +..|+|||++.+
T Consensus       229 ~~vkl~DFG~a~~-------------------~~~~~a~e~l~r  253 (282)
T 1zar_A          229 EGIWIIDFPQSVE-------------------VGEEGWREILER  253 (282)
T ss_dssp             TEEEECCCTTCEE-------------------TTSTTHHHHHHH
T ss_pred             CcEEEEECCCCeE-------------------CCCCCHHHHHHH
Confidence            9999999999863                   345889998743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=3.2e-18  Score=177.85  Aligned_cols=153  Identities=22%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             ccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccC
Q 002376          355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG  434 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  434 (929)
                      .+.++.+++.++ .+|..+.  ++|++|+|++|+|++..|..|..+++|++|+|++|+|+...+..|..+++|++|+|++
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence            445555555554 2333222  4455555555555544444444444444444444444433333444444444444444


Q ss_pred             cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccc
Q 002376          435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY  514 (929)
Q Consensus       435 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~  514 (929)
                      |+|++..+..|..+++                                |++|+|++|+++ .+|..+..+++|+.|+|++
T Consensus        98 N~l~~l~~~~~~~l~~--------------------------------L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~  144 (229)
T 3e6j_A           98 NQLTVLPSAVFDRLVH--------------------------------LKELFMCCNKLT-ELPRGIERLTHLTHLALDQ  144 (229)
T ss_dssp             SCCCCCCTTTTTTCTT--------------------------------CCEEECCSSCCC-SCCTTGGGCTTCSEEECCS
T ss_pred             CcCCccChhHhCcchh--------------------------------hCeEeccCCccc-ccCcccccCCCCCEEECCC
Confidence            4444333333333333                                333333333333 3344444444455555555


Q ss_pred             ccccccCCccccCCCCCCEEECCCCcCCC
Q 002376          515 NQFSGPIPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       515 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      |+|++..+..|..+++|+.|+|++|.+.+
T Consensus       145 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          145 NQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            55544444445555555555555555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.76  E-value=5.7e-21  Score=224.76  Aligned_cols=170  Identities=19%  Similarity=0.206  Sum_probs=100.4

Q ss_pred             CCCcccccccccEEeccCcc-------------CcCCccCCCCCCCccceec-cccccccCCCCCCCCccccccCCCCCC
Q 002376          265 IPGSLHNLTNIQIIRMTHNL-------------LEGTLPPGLGNLPFLRTYN-IGFNKIVSSGDDEGLSFITSLTNSTHL  330 (929)
Q Consensus       265 ~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~i~~~~~~~~~~~~~~~~~l~~L  330 (929)
                      +|..++++++|+.|++++|.             +.+..|..++++++|+.|+ ++.|.+.                  +|
T Consensus       364 Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~------------------~L  425 (567)
T 1dce_A          364 LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD------------------DL  425 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH------------------HH
T ss_pred             hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc------------------hh
Confidence            34444445555555554443             4445555666666666666 4555431                  23


Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecC
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG  410 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  410 (929)
                      ..+.+++|.++.. |.      ..|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .+|..++.+++|++|+|++
T Consensus       426 ~~l~l~~n~i~~l-~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~  495 (567)
T 1dce_A          426 RSKFLLENSVLKM-EY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD  495 (567)
T ss_dssp             HHHHHHHHHHHHH-HH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred             hhhhhhccccccc-Cc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence            3344555555421 11      136666666666665 344 666667777777777766 5566666667777777777


Q ss_pred             CcCCCCCcccccCCCCCceecccCccccccc-CcccccccccceecccCCcCCCC
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEI-PISFGNFQSLLSIDLSNNRINGN  464 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~  464 (929)
                      |+|++ +| .+.++++|+.|+|++|+|++.. |..|+.+++|+.|+|++|+|++.
T Consensus       496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~  548 (567)
T 1dce_A          496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  548 (567)
T ss_dssp             SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence            76665 45 5666666667777666666654 66666666666666666666643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=7.6e-19  Score=186.60  Aligned_cols=167  Identities=22%  Similarity=0.273  Sum_probs=92.3

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      ++..+++++|.+++..  .+..+++|++|++++|.++. +| .+..+++|++|+|++|+|++..+  +.++++|++|+|+
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4555666666665433  45566666666666666653 33 45666666666666666665433  6666666666666


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecc
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA  513 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls  513 (929)
                      +|++++. |.. .. ++|+.|+|++|++++ +         +.+..+++|+.|||++|++++. | .+..+++|+.|+|+
T Consensus        94 ~N~l~~l-~~~-~~-~~L~~L~L~~N~l~~-~---------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~  158 (263)
T 1xeu_A           94 RNRLKNL-NGI-PS-ACLSRLFLDNNELRD-T---------DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLH  158 (263)
T ss_dssp             SSCCSCC-TTC-CC-SSCCEEECCSSCCSB-S---------GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECT
T ss_pred             CCccCCc-Ccc-cc-CcccEEEccCCccCC-C---------hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECC
Confidence            6666542 221 11 556666666666553 1         1344555555555555555543 2 45555555555555


Q ss_pred             cccccccCCccccCCCCCCEEECCCCcCCC
Q 002376          514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       514 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      +|+|++.  ..+..+++|+.|++++|++++
T Consensus       159 ~N~i~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          159 GNEITNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence            5555544  345555555555555555553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=8e-18  Score=170.54  Aligned_cols=154  Identities=20%  Similarity=0.312  Sum_probs=91.2

Q ss_pred             CCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccce
Q 002376          374 GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLS  453 (929)
Q Consensus       374 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  453 (929)
                      +.+++|++|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..|..|..+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            44556666666666665 334 46666666666666665542  235666677777777777776666666666777777


Q ss_pred             ecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCE
Q 002376          454 IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV  533 (929)
Q Consensus       454 L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  533 (929)
                      |++++|++++..        |..+..+++|++|+|++|++.+.+| .+..+++|+.|++++|++++. + .+..+++|+.
T Consensus       117 L~Ls~n~i~~~~--------~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~  185 (197)
T 4ezg_A          117 LDISHSAHDDSI--------LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ  185 (197)
T ss_dssp             EECCSSBCBGGG--------HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred             EEecCCccCcHh--------HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence            777777665432        4556666666666666665222344 455666666666666666542 2 4555566666


Q ss_pred             EECCCCcCC
Q 002376          534 LDLSSNKLS  542 (929)
Q Consensus       534 L~Ls~N~l~  542 (929)
                      |++++|++.
T Consensus       186 L~l~~N~i~  194 (197)
T 4ezg_A          186 LYAFSQTIG  194 (197)
T ss_dssp             EEECBC---
T ss_pred             EEeeCcccC
Confidence            666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=1.2e-18  Score=185.07  Aligned_cols=182  Identities=25%  Similarity=0.430  Sum_probs=91.6

Q ss_pred             CccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCC
Q 002376          185 PPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGK  264 (929)
Q Consensus       185 p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~  264 (929)
                      |..|..+.|..  .+.++..+++++|.+++..  .+..+++|++|++++|+++ .+|                       
T Consensus         6 p~~i~~~~pd~--~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-----------------------   57 (263)
T 1xeu_A            6 PTPINQVFPDP--GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-----------------------   57 (263)
T ss_dssp             CEEHHHHCCSH--HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-----------------------
T ss_pred             CCCHHHhCCCH--HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-----------------------
Confidence            33444444443  4566666777777776543  4666777777777777665 233                       


Q ss_pred             CCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCcccccc
Q 002376          265 IPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI  344 (929)
Q Consensus       265 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  344 (929)
                         .+..+++|+.|+|++|+|++..+  +..+++|+.|++++|++..++.         +.. ++               
T Consensus        58 ---~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~---------~~~-~~---------------  107 (263)
T 1xeu_A           58 ---GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG---------IPS-AC---------------  107 (263)
T ss_dssp             ---TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT---------CCC-SS---------------
T ss_pred             ---HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc---------ccc-Cc---------------
Confidence               23344455555555555553322  4444444444444444332211         111 33               


Q ss_pred             CchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCC
Q 002376          345 PESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANL  424 (929)
Q Consensus       345 p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l  424 (929)
                                |+.|+|++|+|++.  ..+..+++|++|+|++|++++. + .+..+++|++|+|++|++++.  ..+..+
T Consensus       108 ----------L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l  171 (263)
T 1xeu_A          108 ----------LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRL  171 (263)
T ss_dssp             ----------CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTC
T ss_pred             ----------ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccC
Confidence                      44444444444332  1244455555555555555533 2 355555555555555555543  445555


Q ss_pred             CCCceecccCcccccc
Q 002376          425 KKLNQIDLSGNELTGE  440 (929)
Q Consensus       425 ~~L~~L~Ls~N~l~~~  440 (929)
                      ++|+.|++++|.+++.
T Consensus       172 ~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          172 KKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CCCCEEEEEEEEEECC
T ss_pred             CCCCEEeCCCCcccCC
Confidence            5566666666655543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=1e-17  Score=168.93  Aligned_cols=155  Identities=21%  Similarity=0.271  Sum_probs=87.5

Q ss_pred             CCceecccCcccccccCc-ccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcC
Q 002376          426 KLNQIDLSGNELTGEIPI-SFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC  504 (929)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  504 (929)
                      +|++|+|++|++++..+. .|..+++|++|+|++|+|++..        |..+..+++|++|+|++|++++..|..|.++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  101 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--------PNAFEGASHIQELQLGENKIKEISNKMFLGL  101 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--------TTTTTTCTTCCEEECCSCCCCEECSSSSTTC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC--------HhHcCCcccCCEEECCCCcCCccCHHHhcCC
Confidence            455555555555544332 2555555555555555555432        3445555566666666666666666666777


Q ss_pred             cCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCc-ccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccc
Q 002376          505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS-DLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHL  583 (929)
Q Consensus       505 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l  583 (929)
                      ++|++|+|++|+|++.+|..|..+++|++|+|++|.+++..+- ++.  ..++...+..+...+..|..  ++.....++
T Consensus       102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l  177 (192)
T 1w8a_A          102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSK--VRDVQIKDL  177 (192)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTT--TTTSBGGGS
T ss_pred             CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChH--HcCCChhhC
Confidence            7777777777777777777777777777777777777765442 111  11222234444444444432  344444556


Q ss_pred             cCCCCCcCC
Q 002376          584 KGNPKLCLQ  592 (929)
Q Consensus       584 ~~N~~~c~~  592 (929)
                      ..+...|..
T Consensus       178 ~~~~~~C~~  186 (192)
T 1w8a_A          178 PHSEFKCSS  186 (192)
T ss_dssp             CTTTCCCCC
T ss_pred             cHhhcCcCC
Confidence            666666643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=4e-18  Score=171.90  Aligned_cols=156  Identities=24%  Similarity=0.351  Sum_probs=127.3

Q ss_pred             ceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCc
Q 002376          428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL  507 (929)
Q Consensus       428 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L  507 (929)
                      +.+++++|+++ .+|..+..  +|+.|+|++|+|++..+.       ..+..+++|++|+|++|++++..|..|.++++|
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   80 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSD-------GLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCS-------CSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCc-------cccccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence            78899999996 56765543  899999999999854311       237888999999999999999999999999999


Q ss_pred             ceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCC
Q 002376          508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNP  587 (929)
Q Consensus       508 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~  587 (929)
                      ++|+|++|+|++..|..|..+++|++|+|++|+|++.+|..+..+++|++|+|++|++++..+.......+....+.++.
T Consensus        81 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~  160 (192)
T 1w8a_A           81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGA  160 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGG
T ss_pred             CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999876532211112223344554


Q ss_pred             CCcCCC
Q 002376          588 KLCLQL  593 (929)
Q Consensus       588 ~~c~~~  593 (929)
                      ..|..|
T Consensus       161 ~~C~~P  166 (192)
T 1w8a_A          161 ARCGAP  166 (192)
T ss_dssp             CBBCSS
T ss_pred             CCCCCC
Confidence            455443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2.9e-17  Score=166.38  Aligned_cols=150  Identities=18%  Similarity=0.281  Sum_probs=100.2

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      +|+.|++++|.++ .+| .+..+++|++|++++|.++.  +..+..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            5666777776666 334 46666777777777775542  3356667777777777777776666667777777777777


Q ss_pred             CcccccccCcccccccccceecccCCc-CCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeec
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNR-INGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLM  512 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L  512 (929)
                      +|++++..|..|..+++|+.|++++|+ ++ .+        | .+..+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~--------~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAIT-DI--------M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CC--------G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCcc-cc--------H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence            777776666667777777777777776 43 22        3 46667777777777777775 33 6777788888888


Q ss_pred             ccccccc
Q 002376          513 AYNQFSG  519 (929)
Q Consensus       513 s~N~l~~  519 (929)
                      ++|+|.+
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            8887753

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.70  E-value=1.5e-17  Score=183.01  Aligned_cols=125  Identities=15%  Similarity=0.108  Sum_probs=86.1

Q ss_pred             CCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCC-EE
Q 002376          328 THLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ-VL  406 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L  406 (929)
                      .+++.+.+.++-.. .....+.....+|+.++|++|+++...+.+|.++++|+.|+|++| ++...+..|.++++|+ .+
T Consensus       202 ~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l  279 (329)
T 3sb4_A          202 RDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL  279 (329)
T ss_dssp             GGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred             cccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence            44555555554222 111222222236888888888887777777888888888888877 6666667778888887 88


Q ss_pred             EecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceec
Q 002376          407 GLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSID  455 (929)
Q Consensus       407 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  455 (929)
                      ++.+ .++...+.+|.++++|+.|++++|+++.+.+.+|.++++|+.|+
T Consensus       280 ~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          280 ELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            8877 66666667788888888888877887776677777777777765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=5.2e-18  Score=186.76  Aligned_cols=294  Identities=15%  Similarity=0.122  Sum_probs=168.8

Q ss_pred             cccCCCCCC--CCCCCEEEeecCCCCCCCCcCCCC-CCCCcEEeCCCCCCC--CCcccccccccccceecccccccCCCC
Q 002376           85 GTISPHIGN--LSFLRSIQLQNNKLSGNLPREIGN-LFRLRVLNISFNNLQ--GELPVNISKLTELKMLDLMANKITGRV  159 (929)
Q Consensus        85 g~i~~~l~~--L~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~~~i  159 (929)
                      |.++..+..  +.+++.|.++++ +.+..-..+.. +++|++|||++|+|.  ...+.   .++.++.+++..|.    |
T Consensus        13 g~l~~~l~~~~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~----I   84 (329)
T 3sb4_A           13 GTLISMMTEEEANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF----V   84 (329)
T ss_dssp             TCGGGGSCHHHHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE----E
T ss_pred             CcHHhhccchhhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc----c
Confidence            344444443  667777777754 11111112222 677788888888777  22222   22224555555553    4


Q ss_pred             Chhhhcc--------CCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEe
Q 002376          160 TDDQLRN--------LRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRL  231 (929)
Q Consensus       160 ~~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  231 (929)
                      |+.+|.+        +++|+.|+|.+ .+        ..+.+.+|.++++|+.|+|++|.+..+.+.+|.++.++..+.+
T Consensus        85 ~~~aF~~~~~~~~~g~~~L~~l~L~~-~i--------~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~  155 (329)
T 3sb4_A           85 PAYAFSNVVNGVTKGKQTLEKVILSE-KI--------KNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL  155 (329)
T ss_dssp             CTTTTEEEETTEEEECTTCCC-CBCT-TC--------CEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred             CHHHhcccccccccccCCCcEEECCc-cc--------cchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence            5566777        77777777766 33        3344566777777777777777777777777777776666665


Q ss_pred             eecCC---CCcCCcccccCCCCcc-eeeccCCcCCCCCCCcc----cccccccEEeccCccCcCCccCCCCCCCccceec
Q 002376          232 ASNQL---GGEIPYDVRDTLPNLL-DFIYCFNRFTGKIPGSL----HNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYN  303 (929)
Q Consensus       232 s~N~l---~~~ip~~~~~~l~~L~-~l~l~~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  303 (929)
                      ..+..   ...+....+..+..|+ .+.+...   +.++..+    ....+++.+.+.++-...........+++|+.++
T Consensus       156 ~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~  232 (329)
T 3sb4_A          156 GSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLD  232 (329)
T ss_dssp             TCTHHHHTSTTTTTSCEEESCCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEE
T ss_pred             cchhhhhccccccccccccccccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEE
Confidence            55221   0112222233344444 2222211   1111111    1234455555544322111111111256666666


Q ss_pred             cccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhcccccc-EEEecCCccccccCCCCCCCCcccEE
Q 002376          304 IGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS-KLYLGGNHIYGKIPASIGRLRSLTLL  382 (929)
Q Consensus       304 L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L  382 (929)
                      +++|++..++.       .+|.++++|+.|+|.+| ++..-+..|..+. +|+ .+++.+ .++...+.+|.++++|+.+
T Consensus       233 L~~n~i~~I~~-------~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          233 ISKTNATTIPD-------FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTBCCCEECT-------TTTTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             CCCCCcceecH-------hhhhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            66666666554       35677777777777776 6533334455554 688 888887 6776777888889999999


Q ss_pred             EeeCCCCCcccCccccCCCCCCEEEe
Q 002376          383 DLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       383 ~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      +++.|+++...+..|.++++|+.++.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EeCCCccCccchhhhcCCcchhhhcc
Confidence            99888888777778888888888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=2.8e-16  Score=154.66  Aligned_cols=85  Identities=20%  Similarity=0.185  Sum_probs=33.7

Q ss_pred             CccEEEecCCCCCCCCCcchhcCcCcceeecccccccccC-CccccCCCCCCEEECCCCcCCCcCC---cccccCCCCCe
Q 002376          482 NVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPI-PNIVAELKGLEVLDLSSNKLSGSIP---SDLQNLQALRS  557 (929)
Q Consensus       482 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~  557 (929)
                      +|++|+|++|++++.+|..+.++++|++|+|++|+|++.. +..+..+++|+.|++++|++++..+   ..+..+++|++
T Consensus        72 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~  151 (168)
T 2ell_A           72 KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTY  151 (168)
T ss_dssp             SCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCE
T ss_pred             CCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcE
Confidence            3333333333333333333333444444444444443321 1334444444444444444443222   23444444444


Q ss_pred             EeCCCCcCc
Q 002376          558 LNLTFNNLE  566 (929)
Q Consensus       558 L~Ls~N~l~  566 (929)
                      |++++|.+.
T Consensus       152 L~l~~n~~~  160 (168)
T 2ell_A          152 LDGYDREDQ  160 (168)
T ss_dssp             ETTEETTSC
T ss_pred             ecCCCCChh
Confidence            444444443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=6.9e-16  Score=151.86  Aligned_cols=132  Identities=26%  Similarity=0.284  Sum_probs=80.5

Q ss_pred             CCCCEEEccCCccc-cccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEE
Q 002376          328 THLNYLALDGNQFE-GKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVL  406 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~-~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  406 (929)
                      ++|++|+|++|+++ +.+|..+..+. +|++|+|++|.|++.  ..+..+++|++|+|++|++++.+|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            56666666666665 55666555554 566666666666654  556666666666666666665556555556666666


Q ss_pred             EecCCcCCCCCc-ccccCCCCCceecccCcccccccC---cccccccccceecccCCcCC
Q 002376          407 GLAGNEIPGGIP-NSLANLKKLNQIDLSGNELTGEIP---ISFGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       407 ~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~  462 (929)
                      +|++|++++..+ ..+..+++|++|++++|.+++..+   ..|..+++|+.|++++|.+.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            666666664322 556666666666666666664333   24555666666666666553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1e-15  Score=152.07  Aligned_cols=109  Identities=28%  Similarity=0.372  Sum_probs=74.8

Q ss_pred             CCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCc
Q 002376           56 SSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL  135 (929)
Q Consensus        56 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  135 (929)
                      ...|+|.++.|+..            +++ .+|..+.  ++|++|+|++|++++..+..|+.+++|++|+|++|+|++..
T Consensus         4 ~C~C~~~~l~~~~~------------~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~   68 (177)
T 2o6r_A            4 RCSCSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP   68 (177)
T ss_dssp             TCEEETTEEECCSS------------CCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCEeCCCEEEecCC------------CCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC
Confidence            34578888888653            233 3454433  67888888888888666667788888888888888888666


Q ss_pred             ccccccccccceecccccccCCCCChhhhccCCCCcEEEcccccc
Q 002376          136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL  180 (929)
Q Consensus       136 p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l  180 (929)
                      +..|..+++|++|+|++|+|+ .+++..|.++++|++|+|++|++
T Consensus        69 ~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           69 DGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             hhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcc
Confidence            666777777777777777777 35554456666666666666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=154.14  Aligned_cols=128  Identities=27%  Similarity=0.381  Sum_probs=79.9

Q ss_pred             ceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCc
Q 002376          428 NQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSL  507 (929)
Q Consensus       428 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L  507 (929)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|+|+ .+        |..+..+++|+.|||++|++++..|..|.++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~i--------p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L   80 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LV--------PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL   80 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SC--------CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hh--------HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence            45566666665 3444332  35666666666664 22        4455666666666666666666666666667777


Q ss_pred             ceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcc
Q 002376          508 EELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       508 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  567 (929)
                      ++|+|++|+|++..|..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++.+
T Consensus        81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            777777777776666666677777777777777765555556666666666666666553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=4.3e-16  Score=149.99  Aligned_cols=81  Identities=23%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             cCccEEEecCCCCCCCCCcchhcCcCcceeeccccccccc-CCccccCCCCCCEEECCCCcCCCcCC---cccccCCCCC
Q 002376          481 ENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP-IPNIVAELKGLEVLDLSSNKLSGSIP---SDLQNLQALR  556 (929)
Q Consensus       481 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~  556 (929)
                      ++|++|+|++|.+++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|++++..+   ..+..+++|+
T Consensus        64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  143 (149)
T 2je0_A           64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLT  143 (149)
T ss_dssp             TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcc
Confidence            3344444444444433444444444444444444444432 22444555555555555555554333   3445555555


Q ss_pred             eEeCC
Q 002376          557 SLNLT  561 (929)
Q Consensus       557 ~L~Ls  561 (929)
                      .||++
T Consensus       144 ~L~l~  148 (149)
T 2je0_A          144 YLDGY  148 (149)
T ss_dssp             EETTB
T ss_pred             cccCC
Confidence            55544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=4.7e-16  Score=149.72  Aligned_cols=130  Identities=19%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             CCCCCCEEEecCCcCC-CCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhh
Q 002376          399 QLQGLQVLGLAGNEIP-GGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEI  477 (929)
Q Consensus       399 ~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~  477 (929)
                      ..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++.  ..|.++++|++|++++|++++.+        |..+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~--------~~~~   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGL--------EVLA   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCT--------HHHH
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchH--------HHHh
Confidence            3478999999999998 78888889999999999999999876  77889999999999999998644        7778


Q ss_pred             hcccCccEEEecCCCCCCC-CCcchhcCcCcceeecccccccccCC---ccccCCCCCCEEECCC
Q 002376          478 SRLENVVTIDLSDNSLSGN-LPNSLKNCKSLEELLMAYNQFSGPIP---NIVAELKGLEVLDLSS  538 (929)
Q Consensus       478 ~~l~~L~~LdLs~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~  538 (929)
                      ..+++|++|++++|++++. .|..++.+++|++|++++|++++..+   ..+..+++|+.||+++
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8899999999999999874 34789999999999999999998776   6789999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.62  E-value=2e-15  Score=152.00  Aligned_cols=125  Identities=22%  Similarity=0.346  Sum_probs=67.0

Q ss_pred             EEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccccccc
Q 002376           76 LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKI  155 (929)
Q Consensus        76 l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  155 (929)
                      +++++++++ .+|..+.  ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|
T Consensus        15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            344444444 4454432  35556666666555 4555555555555555555555555555555555555555555555


Q ss_pred             CCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       156 ~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      + .+++..|                                .++++|++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus        91 ~-~i~~~~f--------------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 R-CIPPRTF--------------------------------DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             C-BCCTTTT--------------------------------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             C-EeCHHHh--------------------------------CCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            4 2333334                                445555555555555554444555566666666666665


Q ss_pred             CC
Q 002376          236 LG  237 (929)
Q Consensus       236 l~  237 (929)
                      +.
T Consensus       138 ~~  139 (193)
T 2wfh_A          138 LY  139 (193)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=1.4e-14  Score=162.93  Aligned_cols=129  Identities=12%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCC-----cccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSIS-----GEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN  428 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  428 (929)
                      +|+.+.+ .|.++...+.+|.++++|+.+++.+|.+.     ...+..|.++++|+.+++. |.++.....+|.++++|+
T Consensus       249 ~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~  326 (401)
T 4fdw_A          249 GITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVT  326 (401)
T ss_dssp             CCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCC
T ss_pred             CccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCcc
Confidence            4555555 33344444556666666666666665543     2344556666666666666 335545555666666666


Q ss_pred             eecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCC
Q 002376          429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL  493 (929)
Q Consensus       429 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l  493 (929)
                      .++|..| ++.+.+.+|.++ +|+.+++++|.+. .++.+.+..+|      .+++.|++..|.+
T Consensus       327 ~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~~~F~~~~------~~l~~l~vp~~~~  382 (401)
T 4fdw_A          327 QLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFEKVWYGFP------DDITVIRVPAESV  382 (401)
T ss_dssp             EEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCCSSCCCSC------TTCCEEEECGGGH
T ss_pred             EEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-ccccccccCCC------CCccEEEeCHHHH
Confidence            6666443 554555566666 6666666666554 23332222222      2455666655543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.59  E-value=2.5e-14  Score=160.88  Aligned_cols=266  Identities=12%  Similarity=0.120  Sum_probs=202.1

Q ss_pred             CCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEE
Q 002376           94 LSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVL  173 (929)
Q Consensus        94 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L  173 (929)
                      ...++.+.+.+ .++..-..+|.+. +|+.++|..| ++.+-...|.+. +|+.++|.. .++ .|+..+|.++++|+.+
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence            36677777754 4555566777775 7888888766 665666677774 688888875 665 6777788888888888


Q ss_pred             EccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcce
Q 002376          174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLD  253 (929)
Q Consensus       174 ~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~  253 (929)
                      +|++|+++        .+....|. ..+|+.+.|.. .++.+...+|.++++|+.+++..| ++ .|+...|.. .+|+.
T Consensus       186 ~l~~n~l~--------~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~  252 (401)
T 4fdw_A          186 DLSKTKIT--------KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITT  252 (401)
T ss_dssp             ECTTSCCS--------EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSE
T ss_pred             ecCCCcce--------EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccE
Confidence            88888653        33344565 47888888874 477778888888888999988875 54 677777775 78888


Q ss_pred             eeccCCcCCCCCCCcccccccccEEeccCccCc-----CCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCC
Q 002376          254 FIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE-----GTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNST  328 (929)
Q Consensus       254 l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~  328 (929)
                      +.+ .|+++..-+..|.++++|+.+++.+|.+.     .+.+.+|.++++|+.+++. +.+..++.       .+|.+++
T Consensus       253 i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-------~aF~~c~  323 (401)
T 4fdw_A          253 VKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-------GLLGGNR  323 (401)
T ss_dssp             EEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-------TTTTTCC
T ss_pred             EEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-------hhhcCCC
Confidence            888 56677777788899999999999888775     4556789999999999998 45766655       4788899


Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCC-cccEEEeeCCCCC
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLR-SLTLLDLSYNSIS  390 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~  390 (929)
                      +|+.++|..| ++..-+..|..+  +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus       324 ~L~~l~lp~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SCCEEEECTT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CccEEEECcc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            9999999655 663444455554  699999999999888888888884 7899999887754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=3.9e-15  Score=147.80  Aligned_cols=131  Identities=22%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             CCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEec
Q 002376          330 LNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA  409 (929)
Q Consensus       330 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  409 (929)
                      .+.+++++|+++ .+|..+.   .+|+.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            356666777666 4554332   357777777777776666666777777777777777776555556667777777777


Q ss_pred             CCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCC
Q 002376          410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGN  464 (929)
Q Consensus       410 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  464 (929)
                      +|+|++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            7777666666666666777777777776655555556666666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.56  E-value=5e-17  Score=164.82  Aligned_cols=132  Identities=23%  Similarity=0.308  Sum_probs=84.8

Q ss_pred             cccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCc
Q 002376          420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPN  499 (929)
Q Consensus       420 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~  499 (929)
                      .+..+++|++|+|++|++++ +| .+.++++|+.|++++|+++ .+        |..+..+++|++|+|++|++++ +| 
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l--------~~~~~~~~~L~~L~L~~N~l~~-l~-  109 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KI--------ENLDAVADTLEELWISYNQIAS-LS-  109 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SC--------SSHHHHHHHCSEEEEEEEECCC-HH-
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cc--------cchhhcCCcCCEEECcCCcCCc-CC-
Confidence            56666666666666666664 44 5666666666666666665 22        4455555667777777777765 34 


Q ss_pred             chhcCcCcceeecccccccccCC-ccccCCCCCCEEECCCCcCCCcCCcc----------cccCCCCCeEeCCCCcCc
Q 002376          500 SLKNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLSGSIPSD----------LQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       500 ~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~  566 (929)
                      .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++.+|..          +..+++|+.||  +|.++
T Consensus       110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            56667777777777777765332 45677777777777777776655542          66777777776  45544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.54  E-value=2.1e-13  Score=153.76  Aligned_cols=311  Identities=13%  Similarity=0.056  Sum_probs=159.3

Q ss_pred             CCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCC
Q 002376           90 HIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRS  169 (929)
Q Consensus        90 ~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~  169 (929)
                      +|.++++|+.+.|.. .++..-..+|.++++|+.++|..+ ++.+-...|.++++|+.+.+..+ ++ .+...+|.++..
T Consensus        66 AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~~  141 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCDF  141 (394)
T ss_dssp             TTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCCC
T ss_pred             HhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecccc
Confidence            455666666666653 355444556666666666666543 44344455666666666665543 22 344455555543


Q ss_pred             CcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCC
Q 002376          170 LQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLP  249 (929)
Q Consensus       170 L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~  249 (929)
                      ++......          +..+....|.++++|+.+.+..+ +..+....|.++++|+.+++..| ++ .++...+....
T Consensus       142 ~~~~~~~~----------~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~  208 (394)
T 4fs7_A          142 KEITIPEG----------VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECI  208 (394)
T ss_dssp             SEEECCTT----------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCT
T ss_pred             cccccCcc----------ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhcccc
Confidence            33322221          12223345666666666666543 33355556666666666666554 32 34444444444


Q ss_pred             CcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCC
Q 002376          250 NLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTH  329 (929)
Q Consensus       250 ~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~  329 (929)
                      .|+.+.+..+...  +...+...++|+.+.+..+ ++..-..                               .+.++..
T Consensus       209 ~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~-------------------------------~f~~~~~  254 (394)
T 4fs7_A          209 LLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKS-------------------------------VFYGCTD  254 (394)
T ss_dssp             TCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSS-------------------------------TTTTCSS
T ss_pred             ccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccc-------------------------------ccccccc
Confidence            5544444333211  1222222334444443322 1112222                               3444555


Q ss_pred             CCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEec
Q 002376          330 LNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA  409 (929)
Q Consensus       330 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  409 (929)
                      |+.+.+..+... .....+.... .++.+....+.+   ....|..+.+|+.+.+..+ ++..-..+|.++.+|+.+++.
T Consensus       255 l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          255 LESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             CCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred             ceeEEcCCCcce-eecccccccc-ccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence            555555544332 2222333332 455555555432   2345666666666666544 444445566666667666665


Q ss_pred             CCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCC
Q 002376          410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNN  459 (929)
Q Consensus       410 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  459 (929)
                      .+ ++..-..+|.++++|+.+++..| ++.+-..+|.++.+|+.+++..+
T Consensus       329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            43 54444566677777777777655 55455566777777777766544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.54  E-value=3.3e-15  Score=148.26  Aligned_cols=136  Identities=21%  Similarity=0.254  Sum_probs=99.9

Q ss_pred             CCCCCCCCCCEEEeecCCCCCCCCcCCCCCC-CCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccC
Q 002376           89 PHIGNLSFLRSIQLQNNKLSGNLPREIGNLF-RLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNL  167 (929)
Q Consensus        89 ~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l  167 (929)
                      +.+.++++|++|+|++|+++. +|. +..+. +|++|+|++|+|++.  ..|..+++|++|+|++|+|+ .+|+..|..+
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l   87 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL   87 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred             HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence            345677788888888888874 454 44444 888888888888864  57888888888888888887 5666656888


Q ss_pred             CCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCC----ccccCCCCceEEeeecCCC
Q 002376          168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPS----TIYNMTSLVHLRLASNQLG  237 (929)
Q Consensus       168 ~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~  237 (929)
                      ++|++|+|++|++.. +|.      ...+..+++|++|+|++|+++. .|.    .+..+++|++||+++|.+.
T Consensus        88 ~~L~~L~L~~N~i~~-~~~------~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           88 PDLTELILTNNSLVE-LGD------LDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCCEEECCSCCCCC-GGG------GGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCEEECCCCcCCc-chh------hHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            888888888887732 221      0246677888888888888874 454    3778888888888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.54  E-value=7.5e-17  Score=163.47  Aligned_cols=157  Identities=24%  Similarity=0.304  Sum_probs=94.1

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      .++.++++.|.++|..|.                 ++ .+|..+..+++|++|++++|++++ +| .+.++++|++|+++
T Consensus        19 ~l~~l~l~~~~l~~~~~~-----------------l~-~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~   78 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPP-----------------IE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLG   78 (198)
T ss_dssp             CCCCTTCSEEECCBCCTT-----------------CC-CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEE
T ss_pred             cccCcchheeEeccccCc-----------------Hh-hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECC
Confidence            566666666666655554                 00 112245555555555555555554 34 55555566666666


Q ss_pred             CcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCC-cchhcCcCcceeec
Q 002376          434 GNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLP-NSLKNCKSLEELLM  512 (929)
Q Consensus       434 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~L  512 (929)
                      +|+++ .+|..+..+++|+.|++++|++++ +        | .+..+++|++|+|++|++++..+ ..+..+++|++|++
T Consensus        79 ~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l--------~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l  147 (198)
T 1ds9_A           79 RNLIK-KIENLDAVADTLEELWISYNQIAS-L--------S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL  147 (198)
T ss_dssp             EEEEC-SCSSHHHHHHHCSEEEEEEEECCC-H--------H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred             CCCcc-cccchhhcCCcCCEEECcCCcCCc-C--------C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence            66665 345555555666666666666653 1        3 45666667777777777664322 35677777777777


Q ss_pred             ccccccccCCc----------cccCCCCCCEEECCCCcCCC
Q 002376          513 AYNQFSGPIPN----------IVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       513 s~N~l~~~~p~----------~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      ++|.+++.+|.          .+..+++|+.||  +|.++.
T Consensus       148 ~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             CSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             cCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            77777766554          277788888886  666653

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.53  E-value=3.6e-15  Score=157.67  Aligned_cols=116  Identities=20%  Similarity=0.169  Sum_probs=88.7

Q ss_pred             CCCceeecccCceeEEeccc--cCcH----------------------------------------HHHHHHHHHHHccC
Q 002376          663 FSHENLIGSGSFGSVLHNER--TGSW----------------------------------------KSFIAECETLRNVR  700 (929)
Q Consensus       663 ~~~~~~iG~G~~g~Vy~~~~--~~~~----------------------------------------~~~~~E~~~l~~l~  700 (929)
                      |+..+.||+|+||.||+|..  .+..                                        ..+.+|+..+.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999876  1110                                        15778999999998


Q ss_pred             Cccc--cceeeecccCCCCCcceEEEEEEecCC-C----Cccccccc-----cccccccHHHHHHHhh-hCCCCCEEecC
Q 002376          701 HRNL--VKLITSCSSLDSKNMEFLALVYEFLSN-G----SLGDWIHG-----ERKNELDITSALDYLH-NDCEVPVVHSD  767 (929)
Q Consensus       701 Hpni--v~l~~~~~~~~~~~~~~~~lV~e~~~~-g----sL~~~l~~-----~~~~~~~ia~aL~yLH-~~~~~~iiHrD  767 (929)
                      |+++  ...+++.         ..++||||+.+ |    +|.++...     ...++.|++.||+||| +.   +|+|||
T Consensus       129 ~~~i~~p~~~~~~---------~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~---givHrD  196 (258)
T 1zth_A          129 EAGVSVPQPYTYM---------KNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEA---ELVHAD  196 (258)
T ss_dssp             HTTCCCCCEEEEE---------TTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTS---CEECSS
T ss_pred             hCCCCCCeEEEcC---------CCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHC---CEEeCC
Confidence            8864  3333321         25899999942 4    55554432     2344679999999999 77   999999


Q ss_pred             CCCCCeeecCCCceEEecccccccc
Q 002376          768 LKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       768 lk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |||+|||+++  .+||+|||+|...
T Consensus       197 lkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          197 LSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             CSTTSEEESS--SEEECCCTTCEET
T ss_pred             CCHHHEEEcC--cEEEEECcccccC
Confidence            9999999998  9999999999754

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.52  E-value=1.6e-14  Score=143.22  Aligned_cols=134  Identities=21%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCC
Q 002376          323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG  402 (929)
Q Consensus       323 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  402 (929)
                      .+.++.+|++|+|++|+++ .+|. +..+.++|+.|+|++|+|++.  ..|..+++|++|+|++|+|++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            4566788888999999888 4554 455544799999999999875  67888999999999999998665555688899


Q ss_pred             CCEEEecCCcCCCCCcc--cccCCCCCceecccCcccccccCcc----cccccccceecccCCcCC
Q 002376          403 LQVLGLAGNEIPGGIPN--SLANLKKLNQIDLSGNELTGEIPIS----FGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       403 L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~  462 (929)
                      |++|+|++|+|+ .+|.  .+..+++|+.|++++|.++. +|..    +..+++|+.||+++|.+.
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999999986 4555  78888888888888888874 4553    777888888888888754

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.50  E-value=3.6e-13  Score=151.90  Aligned_cols=315  Identities=9%  Similarity=0.008  Sum_probs=163.4

Q ss_pred             ccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcc
Q 002376          190 NLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSL  269 (929)
Q Consensus       190 ~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~  269 (929)
                      .+-..+|.++++|+.+.|.. .++.+...+|.++++|+.++|.++ ++ .|+...+..+.+|+.+.+..+ +...-...|
T Consensus        61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence            34556788888899888864 477777888888889998888755 44 566666666666666554432 333333444


Q ss_pred             cccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhh
Q 002376          270 HNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIG  349 (929)
Q Consensus       270 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  349 (929)
                      .++..++.......  ...-..+|.++++|+.+.+..+. ..++.       ..|.++.+                    
T Consensus       137 ~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-------~~F~~c~~--------------------  186 (394)
T 4fs7_A          137 KGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHN-------GLFSGCGK--------------------  186 (394)
T ss_dssp             TTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECT-------TTTTTCTT--------------------
T ss_pred             ecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceecc-------ccccCCCC--------------------
Confidence            44433322222211  11222344444444444443221 11111       23334444                    


Q ss_pred             hccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCce
Q 002376          350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ  429 (929)
Q Consensus       350 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  429 (929)
                           |+.+.+..| ++.....+|.++..|+.+.+..+...  +...+....+|+.+.+..+ ++......|.++..|+.
T Consensus       187 -----L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~  257 (394)
T 4fs7_A          187 -----LKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLES  257 (394)
T ss_dssp             -----CCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCE
T ss_pred             -----ceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccccccccee
Confidence                 555555443 33333445555555555555444322  2222333345555555432 22223344555555666


Q ss_pred             ecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcce
Q 002376          430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE  509 (929)
Q Consensus       430 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~  509 (929)
                      +.+..+... .....|.++..++.+....+.+.           ...+....+|+.+.+.++ ++..-..+|.++.+|+.
T Consensus       258 ~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-----------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~  324 (394)
T 4fs7_A          258 ISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-----------EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS  324 (394)
T ss_dssp             EEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-----------TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred             EEcCCCcce-eeccccccccccceeccCceeec-----------cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence            555555433 44445555555555555444321           123344555666665543 44334455666666666


Q ss_pred             eecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCC
Q 002376          510 LLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTF  562 (929)
Q Consensus       510 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  562 (929)
                      ++|..+ ++.+-..+|.++.+|+.+++..| ++..-..+|.++.+|+.+++..
T Consensus       325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            666533 55455566666666666666655 5544455666666666666643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=2e-13  Score=134.40  Aligned_cols=104  Identities=22%  Similarity=0.229  Sum_probs=81.6

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccc
Q 002376           75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANK  154 (929)
Q Consensus        75 ~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (929)
                      .+++++++++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus        13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            3555666666 4676664  788888888888888888888888888888888888887777778888888888888888


Q ss_pred             cCCCCChhhhccCCCCcEEEccccccCC
Q 002376          155 ITGRVTDDQLRNLRSLQVLNFGKNLLWG  182 (929)
Q Consensus       155 l~~~i~~~~~~~l~~L~~L~Ls~N~l~~  182 (929)
                      |+ .+++..|.++++|++|+|++|.+..
T Consensus        90 l~-~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           90 LK-SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             cC-EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            87 4666667788888888888887654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=1.3e-13  Score=135.74  Aligned_cols=109  Identities=21%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             cceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCC
Q 002376          451 LLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKG  530 (929)
Q Consensus       451 L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  530 (929)
                      .+.+++++|.++. +|.        .+  .++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++
T Consensus        11 ~~~l~~s~n~l~~-ip~--------~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~   79 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPT--------GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ   79 (170)
T ss_dssp             TTEEECTTSCCSS-CCS--------CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCEEEeCCCCcCc-cCc--------cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence            4566666666652 332        22  146777777777777777777778888888888888888777777778888


Q ss_pred             CCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          531 LEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       531 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      |++|+|++|+|++..+..|..+++|++|+|++|++++..+
T Consensus        80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            8888888888887666677778888888888887776543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=3.1e-13  Score=133.45  Aligned_cols=103  Identities=24%  Similarity=0.269  Sum_probs=80.3

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccc
Q 002376           75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANK  154 (929)
Q Consensus        75 ~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (929)
                      .+++++++++ .+|..+.  ++|++|+|++|+|++..|..|+++++|++|+|++|+|++..+..|.++++|++|+|++|+
T Consensus        16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            5778888874 6777665  788888888888887778888888888888888888887666667788888888888888


Q ss_pred             cCCCCChhhhccCCCCcEEEccccccC
Q 002376          155 ITGRVTDDQLRNLRSLQVLNFGKNLLW  181 (929)
Q Consensus       155 l~~~i~~~~~~~l~~L~~L~Ls~N~l~  181 (929)
                      |+ .+++..|..+++|++|+|++|.+.
T Consensus        93 l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           93 LK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             cc-eeCHHHhccccCCCEEEeCCCCcc
Confidence            87 466666777777777777777664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.43  E-value=2.6e-13  Score=134.05  Aligned_cols=106  Identities=21%  Similarity=0.309  Sum_probs=74.6

Q ss_pred             ceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCC
Q 002376          452 LSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGL  531 (929)
Q Consensus       452 ~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  531 (929)
                      +.+++++|+++ .+|.        .+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++.++..|..+++|
T Consensus        15 ~~l~~~~n~l~-~iP~--------~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPA--------GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             SEEECCSSCCS-SCCS--------CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cEEEeCCCCCC-ccCC--------CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            45666666664 3432        221  467777777777777777777777778888888887777666667777888


Q ss_pred             CEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          532 EVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       532 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      ++|||++|+|++..+..|..+++|++|+|++|++.+.
T Consensus        84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             hEEECCCCccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            8888888888765555677777777777777777654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.39  E-value=1.1e-13  Score=151.75  Aligned_cols=134  Identities=13%  Similarity=0.073  Sum_probs=90.4

Q ss_pred             HHHHhhCCCCCceeecccCceeEEeccccCc-----------------------------HHHHHHHHHHHHccCCcccc
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERTGS-----------------------------WKSFIAECETLRNVRHRNLV  705 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~-----------------------------~~~~~~E~~~l~~l~Hpniv  705 (929)
                      .+.+...-|+..+.||+|+||.||+|.....                             ......++++.+...|+|++
T Consensus        89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~  168 (397)
T 4gyi_A           89 THAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMK  168 (397)
T ss_dssp             HHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence            3333333488899999999999999865410                             11222333444444455655


Q ss_pred             ceeeecccCCCC-CcceEEEEEEecCCCCcccccc--ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC---
Q 002376          706 KLITSCSSLDSK-NMEFLALVYEFLSNGSLGDWIH--GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM---  779 (929)
Q Consensus       706 ~l~~~~~~~~~~-~~~~~~lV~e~~~~gsL~~~l~--~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~---  779 (929)
                      +++......... .....++||||++++.|.++..  ..+....|++.||.|||+.   +||||||||.|||+++++   
T Consensus       169 rL~~~gv~vp~p~~~~~~~LVME~i~G~~L~~l~~~~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~~dgd~~  245 (397)
T 4gyi_A          169 ALYEEGFPVPEPIAQSRHTIVMSLVDALPMRQVSSVPDPASLYADLIALILRLAKH---GLIHGDFNEFNILIREEKDAE  245 (397)
T ss_dssp             HHHHTTCSCCCEEEEETTEEEEECCSCEEGGGCCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEEEEECSS
T ss_pred             HHHhcCCCCCeeeeccCceEEEEecCCccHhhhcccHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeCCCCcc
Confidence            554332211000 0011379999999998887654  2334567999999999998   999999999999998776   


Q ss_pred             -------ceEEeccccccc
Q 002376          780 -------TAKVGDFGLARF  791 (929)
Q Consensus       780 -------~~ki~DfGla~~  791 (929)
                             .+.|+||+-+..
T Consensus       246 d~~~~~~~~~iID~~Q~V~  264 (397)
T 4gyi_A          246 DPSSITLTPIIIXFPQMVS  264 (397)
T ss_dssp             CTTSEEEEEEECCCTTCEE
T ss_pred             cccccccceEEEEeCCccc
Confidence                   389999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.34  E-value=1.9e-12  Score=143.40  Aligned_cols=109  Identities=23%  Similarity=0.248  Sum_probs=91.3

Q ss_pred             CCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeec-CCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcc
Q 002376           58 PCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQN-NKLSGNLPREIGNLFRLRVLNISFNNLQGELP  136 (929)
Q Consensus        58 ~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  136 (929)
                      .|.|.+|.|++.           |+|+ .||. |..+++|++|+|++ |.|++..|..|++|++|++|+|++|+|++..|
T Consensus         7 ~C~~~~v~~~~~-----------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            7 PHGSSGLRCTRD-----------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CSSSSCEECCSS-----------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             cccCCEEEcCCC-----------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence            388877777542           1566 4888 99999999999996 99998888899999999999999999999889


Q ss_pred             cccccccccceecccccccCCCCChhhhccCCCCcEEEccccccC
Q 002376          137 VNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW  181 (929)
Q Consensus       137 ~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~  181 (929)
                      ..|.++++|++|||++|+|+ .+|+..|..++ |+.|+|++|.+.
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             HHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            89999999999999999998 57777676666 888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=2.3e-14  Score=159.53  Aligned_cols=13  Identities=31%  Similarity=0.468  Sum_probs=6.8

Q ss_pred             cccEEEecCCccc
Q 002376          354 ELSKLYLGGNHIY  366 (929)
Q Consensus       354 ~L~~L~Ls~N~l~  366 (929)
                      .|+.|+|++|.|+
T Consensus        73 ~L~~L~Ls~n~l~   85 (372)
T 3un9_A           73 SLRQLNLAGVRMT   85 (372)
T ss_dssp             TCCEEECTTSCCC
T ss_pred             hCCEEEecCCCCC
Confidence            4555555555554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.30  E-value=3.5e-10  Score=127.29  Aligned_cols=329  Identities=12%  Similarity=0.106  Sum_probs=167.2

Q ss_pred             CCCCCC-CCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCC---CCCCcccccccccccceecccccccCCCCChhhhc
Q 002376           90 HIGNLS-FLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNN---LQGELPVNISKLTELKMLDLMANKITGRVTDDQLR  165 (929)
Q Consensus        90 ~l~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~  165 (929)
                      .|.+.. .|+.+.+..+ ++.+-..+|.++++|+.+.++.|.   ++.+-...|.++.+|+.+.+..+ ++ .++..+|.
T Consensus        58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF~  134 (394)
T 4gt6_A           58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAFH  134 (394)
T ss_dssp             TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTTT
T ss_pred             hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhhh
Confidence            455553 5788887643 665666778888888888887664   55444566777777877777654 43 56667777


Q ss_pred             cCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccc
Q 002376          166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVR  245 (929)
Q Consensus       166 ~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  245 (929)
                      ++.+|+.+.+..+         +..+....|..+.+|+.+.+..+ ++.+...+|.+ .+|+.+.+..+-.  .+....+
T Consensus       135 ~c~~L~~i~lp~~---------~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~--~i~~~af  201 (394)
T 4gt6_A          135 HCEELDTVTIPEG---------VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT--RIGTNAF  201 (394)
T ss_dssp             TCTTCCEEECCTT---------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC--EECTTTT
T ss_pred             hhcccccccccce---------eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc--ccccchh
Confidence            7777877777543         22334456677777777777544 55455555543 5677776654432  2333333


Q ss_pred             cCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccC
Q 002376          246 DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLT  325 (929)
Q Consensus       246 ~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~  325 (929)
                      ....++.......+.........+..........           ..+.....+..+.+. +.+..++.       .+|.
T Consensus       202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip-~~v~~i~~-------~aF~  262 (394)
T 4gt6_A          202 SECFALSTITSDSESYPAIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIP-NGVARIET-------HAFD  262 (394)
T ss_dssp             TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECC-TTEEEECT-------TTTT
T ss_pred             hhccccceecccccccccccceeecccccccccc-----------cccccccccceEEcC-CcceEccc-------ceee
Confidence            3344444443333322211000000000000000           000011111111111 11111111       2455


Q ss_pred             CCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCE
Q 002376          326 NSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV  405 (929)
Q Consensus       326 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  405 (929)
                      ++..|+.+.+..+..+ .-...+.++. .|+.+.+. +.++.....+|.++.+|+.++|..+ ++..-..+|.++.+|+.
T Consensus       263 ~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred             ecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence            6666666666544332 2223333333 56666664 3445455566667777777777643 44444556666677777


Q ss_pred             EEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcC
Q 002376          406 LGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRI  461 (929)
Q Consensus       406 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  461 (929)
                      +.+..+ ++..-..+|.++++|+.+++.+|....   ..|....+|+.+.+..|.+
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            766543 554555666677777777766665432   2445555666666555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=1.2e-10  Score=131.19  Aligned_cols=334  Identities=14%  Similarity=0.115  Sum_probs=180.6

Q ss_pred             CCCcCCCCCC-CCcEEeCCCCCCCCCcccccccccccceecccccc---cCCCCChhhhccCCCCcEEEccccccCCCCC
Q 002376          110 NLPREIGNLF-RLRVLNISFNNLQGELPVNISKLTELKMLDLMANK---ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIP  185 (929)
Q Consensus       110 ~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p  185 (929)
                      +-..+|.+++ .|+.+.+..+ ++.+-..+|.++++|+.+.++.|.   ++ .|...+|.++.+|+.+.+..+       
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-------  124 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-------  124 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-------
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-------
Confidence            3455677764 5888888644 665566778888888888887764   44 566677777777776655433       


Q ss_pred             ccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCC
Q 002376          186 PSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKI  265 (929)
Q Consensus       186 ~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~  265 (929)
                        +..+....|..+.+|+.+.+.. .+..+....|.++.+|+.+.+..+ +. .|....+. -.                
T Consensus       125 --~~~I~~~aF~~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~----------------  182 (394)
T 4gt6_A          125 --VTEIDSEAFHHCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GT----------------  182 (394)
T ss_dssp             --CSEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TC----------------
T ss_pred             --cceehhhhhhhhcccccccccc-eeeeecccceecccccccccccce-ee-Eecccccc-cc----------------
Confidence              3344455677777777777753 344456667777777777776544 22 33333333 12                


Q ss_pred             CCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccC
Q 002376          266 PGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP  345 (929)
Q Consensus       266 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p  345 (929)
                              +|+.+.+..+... .-..+|.++..++......+........       .+........-...       .|
T Consensus       183 --------~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-------~~  239 (394)
T 4gt6_A          183 --------ALTQIHIPAKVTR-IGTNAFSECFALSTITSDSESYPAIDNV-------LYEKSANGDYALIR-------YP  239 (394)
T ss_dssp             --------CCSEEEECTTCCE-ECTTTTTTCTTCCEEEECCSSSCBSSSC-------EEEECTTSCEEEEE-------CC
T ss_pred             --------ceeEEEECCcccc-cccchhhhccccceecccccccccccce-------eecccccccccccc-------cc
Confidence                    3444444332211 2233444444444444333322211100       00000000000000       00


Q ss_pred             chhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCC
Q 002376          346 ESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK  425 (929)
Q Consensus       346 ~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~  425 (929)
                          .. ..+..+.+. +.++.....+|.++++|+.+.+..+..+ .....|.++++|+.+.+. +.++.....+|.++.
T Consensus       240 ----~~-~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~  311 (394)
T 4gt6_A          240 ----SQ-REDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCI  311 (394)
T ss_dssp             ----TT-CCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCT
T ss_pred             ----cc-cccceEEcC-CcceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCC
Confidence                00 022233322 2233344566777777777777655433 455667777777777775 445545556777788


Q ss_pred             CCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCc
Q 002376          426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCK  505 (929)
Q Consensus       426 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~  505 (929)
                      +|+.++|..+ ++.+-..+|.++.+|+.+.+..+ ++ .|+       ...|.++++|+.+++.+|....   ..+..+.
T Consensus       312 ~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~-------~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~  378 (394)
T 4gt6_A          312 SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIP-------ESAFSNCTALNNIEYSGSRSQW---NAISTDS  378 (394)
T ss_dssp             TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCC-------GGGGTTCTTCCEEEESSCHHHH---HTCBCCC
T ss_pred             CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEh-------HhHhhCCCCCCEEEECCceeeh---hhhhccC
Confidence            8888887654 55555667888888888877654 33 232       3456777788888888775431   4566777


Q ss_pred             Ccceeeccccccc
Q 002376          506 SLEELLMAYNQFS  518 (929)
Q Consensus       506 ~L~~L~Ls~N~l~  518 (929)
                      +|+.+.+..|.+.
T Consensus       379 ~L~~i~i~~~~~~  391 (394)
T 4gt6_A          379 GLQNLPVAPGSID  391 (394)
T ss_dssp             CC-----------
T ss_pred             CCCEEEeCCCCEE
Confidence            8888877766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.27  E-value=2.6e-13  Score=151.01  Aligned_cols=87  Identities=21%  Similarity=0.305  Sum_probs=50.5

Q ss_pred             cCccEEEecCCCCCC----CCCcchhcCcCcceeeccccccccc----CCccccCCCCCCEEECCCCcCCCc----CCcc
Q 002376          481 ENVVTIDLSDNSLSG----NLPNSLKNCKSLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNKLSGS----IPSD  548 (929)
Q Consensus       481 ~~L~~LdLs~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~  548 (929)
                      ++|++|+|++|.++.    .++..+..+++|++|+|++|.|+..    ++..+...++|+.|||++|.|+..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            445555555555542    1233345556666666666666532    244555666777777777777642    2334


Q ss_pred             cccCCCCCeEeCCCCcCcc
Q 002376          549 LQNLQALRSLNLTFNNLEG  567 (929)
Q Consensus       549 ~~~l~~L~~L~Ls~N~l~~  567 (929)
                      +...+.|++|||++|.++.
T Consensus       235 L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCH
T ss_pred             HHhCCCCCEEeccCCCCCH
Confidence            4455677777777777754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.20  E-value=2.4e-11  Score=134.44  Aligned_cols=106  Identities=19%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             ceecccCC-cCCCCCCCCcccCCchhhhcccCccEEEecC-CCCCCCCCcchhcCcCcceeecccccccccCCccccCCC
Q 002376          452 LSIDLSNN-RINGNIPKGILRPLPEEISRLENVVTIDLSD-NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK  529 (929)
Q Consensus       452 ~~L~Ls~N-~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  529 (929)
                      ..++++++ +|++ |        |. +..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|..++
T Consensus        11 ~~v~~~~~n~l~~-i--------p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~   80 (347)
T 2ifg_A           11 SGLRCTRDGALDS-L--------HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP   80 (347)
T ss_dssp             SCEECCSSCCCTT-T--------TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred             CEEEcCCCCCCCc-c--------CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence            35677777 7763 3        55 77778888888885 888887778888888888888888888888888888888


Q ss_pred             CCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCccc
Q 002376          530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       530 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  568 (929)
                      +|+.|||++|+|++..+..|..++ |+.|+|++|+|.+.
T Consensus        81 ~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           81 RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             CCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            888888888888876666666665 88888888888764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.01  E-value=1.9e-08  Score=112.40  Aligned_cols=128  Identities=8%  Similarity=0.109  Sum_probs=72.5

Q ss_pred             CCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCC
Q 002376           91 IGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL  170 (929)
Q Consensus        91 l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L  170 (929)
                      +..-.+|+.+.+.. .++.+-..+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++ .|...+|.+. +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence            33445666666643 355444566777777777777643 554445566665 5666666543 43 4666666553 67


Q ss_pred             cEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       171 ~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      +.+.+..+.         ..+....|.+. +|+.+.+.. .++.+....|.++.+++...+..+.
T Consensus       116 ~~i~lp~~~---------~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~  169 (379)
T 4h09_A          116 DDFEFPGAT---------TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNN  169 (379)
T ss_dssp             SEEECCTTC---------CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTC
T ss_pred             ccccCCCcc---------ccccccccccc-eeeeeeccc-eeeccccchhccccccccccccccc
Confidence            777765442         22223344443 455554433 3455566667777777777666544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=1.5e-08  Score=113.25  Aligned_cols=132  Identities=12%  Similarity=0.196  Sum_probs=59.1

Q ss_pred             ccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCc
Q 002376          395 IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLP  474 (929)
Q Consensus       395 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p  474 (929)
                      ..+....+|+.+.+..+ +.......|.++..|+.+.+..+ ++.+-..+|.++.+|+.+.+..+ ++ .++       .
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~-------~  279 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVP-------Y  279 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EEC-------T
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecc-------c
Confidence            33444444555544433 22233344555555555555443 33334445555555555555332 21 111       1


Q ss_pred             hhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCC
Q 002376          475 EEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSS  538 (929)
Q Consensus       475 ~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  538 (929)
                      ..|..+++|+.+++.++.++..-+.+|.+|.+|+.+.|..+ ++.+-..+|.++++|+.+.+..
T Consensus       280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            22334444444554444444333444555555555555432 4433344555555555555443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=2.4e-10  Score=125.96  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             cEEEEEcCCCCCcc-c-------cCCCCCCCCCCCEEEeecCCCC---------CCCCcCCCCCCCCcEEeCCCCCCCCC
Q 002376           72 RVIGLNLSSFGLEG-T-------ISPHIGNLSFLRSIQLQNNKLS---------GNLPREIGNLFRLRVLNISFNNLQGE  134 (929)
Q Consensus        72 ~v~~l~l~~~~l~g-~-------i~~~l~~L~~L~~L~Ls~N~l~---------~~~p~~~~~l~~L~~L~Ls~N~l~~~  134 (929)
                      +|+.|.+...+..| .       +..++..+++|+.|.+..+...         +.++..+..+++|+.|+|++|.-. .
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~  186 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-S  186 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-B
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-e
Confidence            67788877666553 2       2455677899999999776432         123344567788999999887311 2


Q ss_pred             cccccccccccceecccccccCCCCChhhhc--cCCCCcEEEccc--cccCCCC-CccccccCCCccCCCCcccEEEeec
Q 002376          135 LPVNISKLTELKMLDLMANKITGRVTDDQLR--NLRSLQVLNFGK--NLLWGSI-PPSIANLIPSDLSRLENLKVLDLTI  209 (929)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~--~l~~L~~L~Ls~--N~l~~~~-p~~i~~l~p~~~~~l~~L~~L~Ls~  209 (929)
                      ++. + .+++|++|+|..|.++... ...+.  .+++|+.|+|+.  |...+.. ...+..++..  ..+++|++|+|++
T Consensus       187 l~~-~-~~~~L~~L~L~~~~l~~~~-l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~--~~~p~Lr~L~L~~  261 (362)
T 2ra8_A          187 IGK-K-PRPNLKSLEIISGGLPDSV-VEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK--DRFPNLKWLGIVD  261 (362)
T ss_dssp             CCS-C-BCTTCSEEEEECSBCCHHH-HHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT--TTCTTCCEEEEES
T ss_pred             ecc-c-cCCCCcEEEEecCCCChHH-HHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc--CCCCCcCEEeCCC
Confidence            333 3 3788899998888765211 11233  678888888863  2221110 0111111110  2467777777777


Q ss_pred             ccCCCccCCccc---cCCCCceEEeeecCCCC
Q 002376          210 NRLAGTVPSTIY---NMTSLVHLRLASNQLGG  238 (929)
Q Consensus       210 N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~  238 (929)
                      |.+....+..+.   .+++|++|+|+.|.|++
T Consensus       262 ~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          262 AEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             CTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             CCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            777643333332   35667777777776653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.84  E-value=4.9e-10  Score=123.47  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=32.8

Q ss_pred             ccCccEEEecCCCCCCCCCcchh---cCcCcceeeccccccccc----CCccccCCCCCCEEECCCCcCCC
Q 002376          480 LENVVTIDLSDNSLSGNLPNSLK---NCKSLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       480 l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~  543 (929)
                      +++|+.|+|++|.+.+..+..+.   .+++|+.|+|+.|.|++.    ++..+..+++|+.|+|++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44566666666655432222222   345566666666666542    22223345566666666665553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.82  E-value=3.4e-11  Score=125.86  Aligned_cols=162  Identities=18%  Similarity=0.192  Sum_probs=91.7

Q ss_pred             CCCCcceeeCCCCCcEEEEEcCC---CCCccccCC-CCCCCCCCCEEEeecCCCCCCCCc-CCCCCCCCcE--EeCCCCC
Q 002376           58 PCTWPGVICNNFGNRVIGLNLSS---FGLEGTISP-HIGNLSFLRSIQLQNNKLSGNLPR-EIGNLFRLRV--LNISFNN  130 (929)
Q Consensus        58 ~c~w~gv~c~~~~~~v~~l~l~~---~~l~g~i~~-~l~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~--L~Ls~N~  130 (929)
                      .|.|.|++|+..+.+|+.+-..+   ..+.|.+++ .+..|+.  .|...+|.-++.++- .|...+.|+.  ++++.|.
T Consensus        77 l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~  154 (267)
T 3rw6_A           77 LKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR  154 (267)
T ss_dssp             HHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred             HHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence            58999999997666776655544   233444432 1222221  122222322222221 2444455555  6667664


Q ss_pred             CC---CCcccccccccccceecccccccCC--CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEE
Q 002376          131 LQ---GELPVNISKLTELKMLDLMANKITG--RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL  205 (929)
Q Consensus       131 l~---~~~p~~~~~l~~L~~L~Ls~N~l~~--~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L  205 (929)
                      ..   +.++....++++|++|+|++|+|++  .++. .+..+++|+.|+|++|++.+.  ..+     ..+..+ +|+.|
T Consensus       155 ~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l-----~~l~~l-~L~~L  225 (267)
T 3rw6_A          155 RSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--REL-----DKIKGL-KLEEL  225 (267)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGG-----GGGTTS-CCSEE
T ss_pred             HHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhh-----hhcccC-CcceE
Confidence            33   1122222456778888888888875  2222 366788888888888877542  111     122334 78888


Q ss_pred             EeecccCCCccCC-------ccccCCCCceEE
Q 002376          206 DLTINRLAGTVPS-------TIYNMTSLVHLR  230 (929)
Q Consensus       206 ~Ls~N~l~~~~p~-------~~~~l~~L~~L~  230 (929)
                      +|++|.+.+..|.       .+..+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8888888765552       366778888775

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.78  E-value=4.7e-09  Score=110.86  Aligned_cols=132  Identities=14%  Similarity=0.059  Sum_probs=99.0

Q ss_pred             HHHHhhCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCc
Q 002376          655 ELRRATGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       655 ~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~  719 (929)
                      .+....++|+.....|.|+.+.||+....              .....+.+|+++++.+. |..+.++++++..     .
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~-----~   82 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-----D   82 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-----T
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEECCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec-----C
Confidence            34555677888888888888999986532              12235889999999985 6677888888743     2


Q ss_pred             ceEEEEEEecCCCCcccccc---ccccccccHHHHHHHhhhCC-------------------------------------
Q 002376          720 EFLALVYEFLSNGSLGDWIH---GERKNELDITSALDYLHNDC-------------------------------------  759 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~---~~~~~~~~ia~aL~yLH~~~-------------------------------------  759 (929)
                      +..|+||||++|.++.+...   .......+++++++.||+..                                     
T Consensus        83 ~~~~lv~e~i~G~~l~~~~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (263)
T 3tm0_A           83 GWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEEDT  162 (263)
T ss_dssp             TEEEEEEECCSSEEHHHHCCTTTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGSTTC
T ss_pred             CceEEEEEecCCeehhhccCCcccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccccc
Confidence            34799999999999887532   22234678889999999810                                     


Q ss_pred             -------------------CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 -------------------EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 -------------------~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                                         .+.++|+|++|.||+++++..+.|.||+.+..
T Consensus       163 ~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          163 PFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             SSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             cCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence                               13589999999999998766677999998753

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.61  E-value=2e-08  Score=105.77  Aligned_cols=127  Identities=14%  Similarity=0.057  Sum_probs=86.2

Q ss_pred             hhCCCCCceeecccCceeEEecccc------------CcHHHHHHHHHHHHccCCcc--ccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT------------GSWKSFIAECETLRNVRHRN--LVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~------------~~~~~~~~E~~~l~~l~Hpn--iv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ...+|......+.|..+.||+....            .....+.+|+++++.+.+.+  +.+++++....     +..++
T Consensus        18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~-----~~~~~   92 (264)
T 1nd4_A           18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEA-----GRDWL   92 (264)
T ss_dssp             TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCTTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS-----SCEEE
T ss_pred             hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcccchhhhHHHHHHHHHHhCCCCCCeEEEeccCC-----CCCEE
Confidence            3444554333345556888876532            11245789999999996544  44577776432     33799


Q ss_pred             EEEecCCCCccccccc-cccccccHHHHHHHhhhCC--------------------------------------------
Q 002376          725 VYEFLSNGSLGDWIHG-ERKNELDITSALDYLHNDC--------------------------------------------  759 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~-~~~~~~~ia~aL~yLH~~~--------------------------------------------  759 (929)
                      ||||++|.++. +-.. ......+++++++.||+..                                            
T Consensus        93 v~e~i~G~~l~-~~~~~~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (264)
T 1nd4_A           93 LLGEVPGQDLL-SSHLAPAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELF  171 (264)
T ss_dssp             EEECCSSEETT-TSCCCHHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHH
T ss_pred             EEEecCCcccC-cCcCCHhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHH
Confidence            99999998885 2111 1234567788888888742                                            


Q ss_pred             -----------CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 -----------EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 -----------~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                                 .+.++|+|++|.||++++++.++|.|||.+..
T Consensus       172 ~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          172 ARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             HHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             HHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence                       12399999999999998876778999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.51  E-value=2.5e-08  Score=104.17  Aligned_cols=108  Identities=20%  Similarity=0.282  Sum_probs=68.4

Q ss_pred             cccccccce--ecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCC--CCCcchhcCcCcceeeccccccccc
Q 002376          445 FGNFQSLLS--IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG--NLPNSLKNCKSLEELLMAYNQFSGP  520 (929)
Q Consensus       445 ~~~l~~L~~--L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~  520 (929)
                      |...+.|..  ++++.|+.. .++    ..++....++++|+.|+||+|+|++  .+|..+..+++|+.|+|++|+|++.
T Consensus       137 l~~dp~L~~~~l~l~~N~~~-~~~----~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~  211 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRS-CMA----ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE  211 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHH-HHH----HHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG
T ss_pred             cCCCcchhhcCccccCCHHH-HHH----HHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc
Confidence            444455555  666766432 110    0001122456778888888888877  4456677788888888888888765


Q ss_pred             CCccccCCC--CCCEEECCCCcCCCcCCc-------ccccCCCCCeEe
Q 002376          521 IPNIVAELK--GLEVLDLSSNKLSGSIPS-------DLQNLQALRSLN  559 (929)
Q Consensus       521 ~p~~~~~l~--~L~~L~Ls~N~l~~~~p~-------~~~~l~~L~~L~  559 (929)
                        ..+..++  +|+.|+|++|.+++.+|.       .+..+++|+.||
T Consensus       212 --~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          212 --RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             --GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             --hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence              2333344  788888888888876652       356677777776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.37  E-value=3.6e-08  Score=97.92  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=19.2

Q ss_pred             ccCCCCCCEEEC--CCCcCCCc----CCcccccCCCCCeEeCCCCcCc
Q 002376          525 VAELKGLEVLDL--SSNKLSGS----IPSDLQNLQALRSLNLTFNNLE  566 (929)
Q Consensus       525 ~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  566 (929)
                      +...+.|++|+|  ++|.+...    +...+...+.|++|+|++|.+.
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            333444555555  44544432    1223333455555555555543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.34  E-value=5.2e-08  Score=96.75  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=89.8

Q ss_pred             CcccccCCCCCceecccCc-ccccc----cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCC
Q 002376          417 IPNSLANLKKLNQIDLSGN-ELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN  491 (929)
Q Consensus       417 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N  491 (929)
                      +...+...+.|++|+|++| .+...    +...+...++|++|+|++|+|...-    ...+...+...++|++|||++|
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g----~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPV----AFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHH----HHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHH----HHHHHHHHHhCCCcCEEECcCC
Confidence            3445677889999999999 88643    3344566788999999999986311    1112344556688999999999


Q ss_pred             CCCCC----CCcchhcCcCcceeec--cccccccc----CCccccCCCCCCEEECCCCcCC
Q 002376          492 SLSGN----LPNSLKNCKSLEELLM--AYNQFSGP----IPNIVAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       492 ~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~  542 (929)
                      .++..    +...+...++|++|+|  ++|.|+..    +...+...++|+.|+|++|.+.
T Consensus       104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            98753    3556777788999999  88998754    3455666789999999999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.23  E-value=9.7e-07  Score=97.66  Aligned_cols=124  Identities=15%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             ceeecccCceeEEecccc---------C--------cHHHHHHHHHHHHccC--CccccceeeecccCCCCCcceEEEEE
Q 002376          666 ENLIGSGSFGSVLHNERT---------G--------SWKSFIAECETLRNVR--HRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~---------~--------~~~~~~~E~~~l~~l~--Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .+.++.|.++.||+....         .        ....+.+|+++++.+.  +..+.++++++.+.+.  .+..|+||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~--~g~~~~vm  120 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV--IGRAFYIM  120 (359)
T ss_dssp             EEECCC-CCSCEEEEECSSCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT--TSSCEEEE
T ss_pred             EEEcCCcccceEEEEEECCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc--cCCeEEEE
Confidence            467888888888875432         1        1246788999999997  4557888888754321  13468999


Q ss_pred             EecCCCCcccc-ccc-----cccccccHHHHHHHhhhCC-----------------------------------------
Q 002376          727 EFLSNGSLGDW-IHG-----ERKNELDITSALDYLHNDC-----------------------------------------  759 (929)
Q Consensus       727 e~~~~gsL~~~-l~~-----~~~~~~~ia~aL~yLH~~~-----------------------------------------  759 (929)
                      ||++|..+.+. +..     ......+++++|+.||+..                                         
T Consensus       121 e~v~G~~l~~~~~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (359)
T 3dxp_A          121 EFVSGRVLWDQSLPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIPAMDSL  200 (359)
T ss_dssp             ECCCCBCCCCTTCTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             EecCCeecCCCccccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCChHHHHH
Confidence            99999888542 211     1233567888899999731                                         


Q ss_pred             --------------CCCEEecCCCCCCeeecCCCc--eEEeccccccc
Q 002376          760 --------------EVPVVHSDLKPGNILLDEEMT--AKVGDFGLARF  791 (929)
Q Consensus       760 --------------~~~iiHrDlk~~NILl~~~~~--~ki~DfGla~~  791 (929)
                                    .+.++|+|+++.||++++++.  +.|.||+.+..
T Consensus       201 ~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          201 MDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             HHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             HHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence                          246999999999999997753  68999999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.79  E-value=2.4e-05  Score=84.09  Aligned_cols=124  Identities=15%  Similarity=0.216  Sum_probs=81.4

Q ss_pred             ceeecccCceeEEecccc---------CcHHHHHHHHHHHHccC-Ccc--ccceeeecccCCCCCcceEEEEEEecCCCC
Q 002376          666 ENLIGSGSFGSVLHNERT---------GSWKSFIAECETLRNVR-HRN--LVKLITSCSSLDSKNMEFLALVYEFLSNGS  733 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~---------~~~~~~~~E~~~l~~l~-Hpn--iv~l~~~~~~~~~~~~~~~~lV~e~~~~gs  733 (929)
                      .+.++.|....||+....         .....+.+|+++++.+. +..  +.+.+.+....  ......|+||||++|.+
T Consensus        25 i~~~~~G~~n~v~~v~~~~vlR~~~~~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~vm~~i~G~~  102 (304)
T 3sg8_A           25 IEISGEGNDCIAYEINRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAGFTKIKGVP  102 (304)
T ss_dssp             CCEEEECSSEEEEESTTSEEEEEESSHHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEEEECCCCEE
T ss_pred             eEecCCCCcceEEEECCEEEEEecCCcchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEEEcccCCeE
Confidence            456899999999986532         12457889999999884 332  33444443221  11223589999999988


Q ss_pred             ccccccc------cccccccHHHHHHHhhhC-------------------------------------------------
Q 002376          734 LGDWIHG------ERKNELDITSALDYLHND-------------------------------------------------  758 (929)
Q Consensus       734 L~~~l~~------~~~~~~~ia~aL~yLH~~-------------------------------------------------  758 (929)
                      +.+....      ....+.++++.++.||+.                                                 
T Consensus       103 l~~~~~~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~  182 (304)
T 3sg8_A          103 LTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILE  182 (304)
T ss_dssp             CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHT
T ss_pred             CCccccccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHh
Confidence            8653211      122344556666666641                                                 


Q ss_pred             ------CCCCEEecCCCCCCeeecC--CCceEEeccccccc
Q 002376          759 ------CEVPVVHSDLKPGNILLDE--EMTAKVGDFGLARF  791 (929)
Q Consensus       759 ------~~~~iiHrDlk~~NILl~~--~~~~ki~DfGla~~  791 (929)
                            ..+.++|+|++|.||++++  ...+.|.||+.+..
T Consensus       183 ~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          183 NEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             CGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             ccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence                  1246899999999999998  45688999998864

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.42  E-value=5.9e-05  Score=72.89  Aligned_cols=34  Identities=15%  Similarity=0.050  Sum_probs=17.5

Q ss_pred             cccEEEeeCCCCCcccCccccCCCCCCEEEecCC
Q 002376          378 SLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN  411 (929)
Q Consensus       378 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  411 (929)
                      .|+.|||+++.|+..--..+.++++|+.|+|+++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4555555555555443334445555555555555

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.36  E-value=4.9e-05  Score=73.46  Aligned_cols=83  Identities=12%  Similarity=0.079  Sum_probs=56.3

Q ss_pred             cccEEEecCCccccccCCCCCCCCcccEEEeeCCC-CCcccCccccCC----CCCCEEEecCCc-CCCCCcccccCCCCC
Q 002376          354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS-ISGEIPIEIGQL----QGLQVLGLAGNE-IPGGIPNSLANLKKL  427 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~L~~N~-l~~~~p~~~~~l~~L  427 (929)
                      .|+.||++++.|+..--..+.++++|++|+|++|. |++.--..+..+    ++|++|+|+++. |+..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            58888888888776555667788999999999985 775544445553    357777777764 654333445566666


Q ss_pred             ceecccCcc
Q 002376          428 NQIDLSGNE  436 (929)
Q Consensus       428 ~~L~Ls~N~  436 (929)
                      ++|+|+++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.23  E-value=0.00038  Score=74.72  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=75.7

Q ss_pred             ceeecccCceeEEecccc---------CcHHHHHHHHHHHHccCCc---cccceeeecccCCCCCcceEEEEEEecCCCC
Q 002376          666 ENLIGSGSFGSVLHNERT---------GSWKSFIAECETLRNVRHR---NLVKLITSCSSLDSKNMEFLALVYEFLSNGS  733 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~---------~~~~~~~~E~~~l~~l~Hp---niv~l~~~~~~~~~~~~~~~~lV~e~~~~gs  733 (929)
                      .+.++.|....||+....         .....+.+|+++++.+.+.   .+.+.+.++..    ..+..++||||++|..
T Consensus        24 v~~l~~G~~n~v~~vg~~~VlR~~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~----~~g~~~~v~e~i~G~~   99 (306)
T 3tdw_A           24 VESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKR----SDGNPFVGYRKVQGQI   99 (306)
T ss_dssp             EEEEEECSSEEEEEETTTEEEEEESSHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEEC----TTSCEEEEEECCCSEE
T ss_pred             eeecCCCcceeEEEECCEEEEEecCCchHHHHHHHHHHHHHHHHhcCCCCCCCeEeeccc----CCCceEEEEeccCCeE
Confidence            356777877788765211         1245788999999999753   24455555431    1233689999999987


Q ss_pred             cccccc------ccccccccHHHHHHHhhhC-------------------------------------------------
Q 002376          734 LGDWIH------GERKNELDITSALDYLHND-------------------------------------------------  758 (929)
Q Consensus       734 L~~~l~------~~~~~~~~ia~aL~yLH~~-------------------------------------------------  758 (929)
                      +.+..-      .......++++.|+.||+.                                                 
T Consensus       100 l~~~~~~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~  179 (306)
T 3tdw_A          100 LGEDGMAVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSY  179 (306)
T ss_dssp             CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHH
T ss_pred             CchhhhhhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            765210      0011122222333333221                                                 


Q ss_pred             --------CCCCEEecCCCCCCeeecC---CCc-eEEeccccccc
Q 002376          759 --------CEVPVVHSDLKPGNILLDE---EMT-AKVGDFGLARF  791 (929)
Q Consensus       759 --------~~~~iiHrDlk~~NILl~~---~~~-~ki~DfGla~~  791 (929)
                              ..+.++|+|+++.||++++   ++. +.|.||+.+..
T Consensus       180 l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          180 MTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             HHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             HhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence                    2346899999999999987   455 58999998764

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=96.88  E-value=0.00086  Score=70.39  Aligned_cols=101  Identities=13%  Similarity=0.061  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEEEecCCCCccccccc----cccccccHH-----------
Q 002376          686 WKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG----ERKNELDIT-----------  749 (929)
Q Consensus       686 ~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~----~~~~~~~ia-----------  749 (929)
                      ...+.+|...|+.+. +--|-++++++.+.     +..++|||++++.++.+....    ......+++           
T Consensus        63 ~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~-----~~~~lvme~l~G~~~~~~~~~~~~~~~~~~~~l~~~L~~Lh~~~~  137 (272)
T 4gkh_A           63 ANDVTDEMVRLNWLTAFMPLPTIKHFIRTP-----DDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPV  137 (272)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCCEEEEEEET-----TEEEEEEECCCSEEHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCG
T ss_pred             HhHHHHHHHHHHHhccCCCcCeEEEEEEEC-----CeEEEEEEeeCCccccccccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            456889999998885 22355677776443     347999999998766543210    001111222           


Q ss_pred             ----------------------------------------HHHHHhhhCC----CCCEEecCCCCCCeeecCCCceEEec
Q 002376          750 ----------------------------------------SALDYLHNDC----EVPVVHSDLKPGNILLDEEMTAKVGD  785 (929)
Q Consensus       750 ----------------------------------------~aL~yLH~~~----~~~iiHrDlk~~NILl~~~~~~ki~D  785 (929)
                                                              ...+.+....    .+.++|+|+.+.||++++++.+-|.|
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viD  217 (272)
T 4gkh_A          138 CNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCID  217 (272)
T ss_dssp             GGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECC
T ss_pred             ccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEE
Confidence                                                    2233333221    23479999999999999887778999


Q ss_pred             cccccc
Q 002376          786 FGLARF  791 (929)
Q Consensus       786 fGla~~  791 (929)
                      |+.+..
T Consensus       218 we~a~~  223 (272)
T 4gkh_A          218 VGRVGI  223 (272)
T ss_dssp             CTTCEE
T ss_pred             Cccccc
Confidence            998864

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.72  E-value=0.00033  Score=68.98  Aligned_cols=62  Identities=11%  Similarity=0.198  Sum_probs=29.7

Q ss_pred             CcCcceeeccccccccc----CCccccCCCCCCEEECCCCc---CCC----cCCcccccCCCCCeEeCCCCcC
Q 002376          504 CKSLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNK---LSG----SIPSDLQNLQALRSLNLTFNNL  565 (929)
Q Consensus       504 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~---l~~----~~p~~~~~l~~L~~L~Ls~N~l  565 (929)
                      -+.|+.|+|++|+|+..    +-..+..-+.|+.|+|++|.   +..    .+-..+..-+.|+.|+++.|..
T Consensus        97 N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           97 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             CCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            34444444444444321    22334444556666666542   221    1223344456677777766553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.68  E-value=0.00041  Score=68.30  Aligned_cols=16  Identities=38%  Similarity=0.455  Sum_probs=8.0

Q ss_pred             CCCCCCEEECCCCcCC
Q 002376          527 ELKGLEVLDLSSNKLS  542 (929)
Q Consensus       527 ~l~~L~~L~Ls~N~l~  542 (929)
                      .-+.|+.|+|++|.|.
T Consensus        96 ~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HCSSCCEEECCSSBCC
T ss_pred             cCCccCeEecCCCcCC
Confidence            3344555555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.0029  Score=58.12  Aligned_cols=34  Identities=29%  Similarity=0.239  Sum_probs=13.1

Q ss_pred             CcEEeCCCCCCCCCcccccccccccceecccccc
Q 002376          121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANK  154 (929)
Q Consensus       121 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (929)
                      |++|+|++|+|+...+..|..+++|++|+|++|.
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3344444444433333333333333444443333

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.003  Score=58.00  Aligned_cols=35  Identities=34%  Similarity=0.365  Sum_probs=19.1

Q ss_pred             CCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCc
Q 002376          530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       530 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      +|+.|||++|+|+...+..|..+++|+.|+|++|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            45666666666665444455555555555444333

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.53  E-value=0.0026  Score=69.10  Aligned_cols=32  Identities=31%  Similarity=0.383  Sum_probs=28.5

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .+.++|+|+++.||+++.++.+.|.||+.+..
T Consensus       221 ~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          221 SPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             SCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             cCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            45899999999999998888999999998763

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=96.38  E-value=0.002  Score=70.64  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=27.1

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      .+.++|+|+.+.||+++++..+.|.||+.+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            34789999999999999654578999998874

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=96.29  E-value=0.0087  Score=63.97  Aligned_cols=64  Identities=17%  Similarity=0.112  Sum_probs=45.6

Q ss_pred             ceeecccCceeEEecccc-----------CcHHHHHHHHHHHHccC---CccccceeeecccCCCCCcceEEEEEEecCC
Q 002376          666 ENLIGSGSFGSVLHNERT-----------GSWKSFIAECETLRNVR---HRNLVKLITSCSSLDSKNMEFLALVYEFLSN  731 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~-----------~~~~~~~~E~~~l~~l~---Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~  731 (929)
                      .+.|+.|....+|+....           .....|.+|.+.|+.+.   ...+.++++++...     +..++||||+++
T Consensus        41 ~~~l~gG~~n~~y~v~~~~~~~vlK~~~~~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~-----g~~~lvme~l~G  115 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLINDEVQTVFVKINERSYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ-----GHSFLLLEALNK  115 (312)
T ss_dssp             EEEECCSSSSEEEEEESSSCEEEEEEEEGGGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS-----SEEEEEEECCCC
T ss_pred             eEEeCCccceeeeEEEECCCeEEEEeCCcccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC-----CceEEEEEeccC
Confidence            456788888888775432           23457889999998884   25577777776432     347999999998


Q ss_pred             CCc
Q 002376          732 GSL  734 (929)
Q Consensus       732 gsL  734 (929)
                      ..+
T Consensus       116 ~~~  118 (312)
T 3jr1_A          116 SKN  118 (312)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            765

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=96.12  E-value=0.0088  Score=66.55  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=26.4

Q ss_pred             CCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      +.++|+|+.+.||+++++ .+++.||..+...
T Consensus       227 ~~L~HGDl~~~Nil~~~~-~~~lID~e~a~~G  257 (397)
T 2olc_A          227 ETLIHGDLHTGSIFASEH-ETKVIDPEFAFYG  257 (397)
T ss_dssp             CEEECSCCSGGGEEECSS-CEEECCCTTCEEE
T ss_pred             CceeeCCCCcCcEEEeCC-CeEEEeCcccccC
Confidence            478999999999999876 4899999887743

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=95.80  E-value=0.018  Score=61.92  Aligned_cols=141  Identities=20%  Similarity=0.145  Sum_probs=78.0

Q ss_pred             CCChHHHHHhhCCCCC-----ceeecccCceeEEecccc----------C--cHHHHHHHHHHHHccCCcc--ccceeee
Q 002376          650 KISYDELRRATGNFSH-----ENLIGSGSFGSVLHNERT----------G--SWKSFIAECETLRNVRHRN--LVKLITS  710 (929)
Q Consensus       650 ~~~~~~l~~~~~~~~~-----~~~iG~G~~g~Vy~~~~~----------~--~~~~~~~E~~~l~~l~Hpn--iv~l~~~  710 (929)
                      .++.+++......|..     .+.|+.|....||+....          .  ..+.+..|+.+++.+....  +.+++..
T Consensus         6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g~~vlk~~~~~~~~~~l~~e~~~l~~L~~~g~~vP~~~~~   85 (322)
T 2ppq_A            6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKDPLILTLYEKRVEKNDLPFFLGLMQHLAAKGLSCPLPLPR   85 (322)
T ss_dssp             CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSCCEEEEEECC---CCHHHHHHHHHHHHHHTTCCCCCBCCB
T ss_pred             cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCCCCcccCC
Confidence            4566666666666654     234666777777765421          1  2346778888888774322  2333322


Q ss_pred             cccCCC--CCcceEEEEEEecCCCCcccc--------------ccc-------cc----c-----------------cc-
Q 002376          711 CSSLDS--KNMEFLALVYEFLSNGSLGDW--------------IHG-------ER----K-----------------NE-  745 (929)
Q Consensus       711 ~~~~~~--~~~~~~~lV~e~~~~gsL~~~--------------l~~-------~~----~-----------------~~-  745 (929)
                      . +...  ...+..++||||++|..+...              +|.       ..    .                 .. 
T Consensus        86 ~-~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  164 (322)
T 2ppq_A           86 K-DGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK  164 (322)
T ss_dssp             T-TCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred             C-CCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence            1 0000  011346899999998654321              110       00    0                 00 


Q ss_pred             ---ccHHHHHHHhhhC----CCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          746 ---LDITSALDYLHND----CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       746 ---~~ia~aL~yLH~~----~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                         ..+...+++++..    .+..++|+|+.+.||+++++..+.|.||+.+..
T Consensus       165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence               0133445555532    234789999999999999876668999998763

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=95.17  E-value=0.032  Score=58.82  Aligned_cols=63  Identities=14%  Similarity=0.004  Sum_probs=41.8

Q ss_pred             CCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCc---cccceeeecccCCCCCcceEEEE
Q 002376          664 SHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHR---NLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hp---niv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      ...+.+|.|..+.||+.+..               .....|.+|++.|+.+.-.   -+.+++++.   +      -++|
T Consensus        18 ~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---~------~~lv   88 (288)
T 3f7w_A           18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---D------RTLA   88 (288)
T ss_dssp             EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---T------TEEE
T ss_pred             EEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---C------ceEE
Confidence            34567899999999986543               1124688999999988532   244444442   1      2889


Q ss_pred             EEecCCCCcc
Q 002376          726 YEFLSNGSLG  735 (929)
Q Consensus       726 ~e~~~~gsL~  735 (929)
                      |||++++...
T Consensus        89 ~e~l~~~~~~   98 (288)
T 3f7w_A           89 MEWVDERPPT   98 (288)
T ss_dssp             EECCCCCCCC
T ss_pred             EEeecccCCC
Confidence            9999876543

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.89  E-value=0.034  Score=62.28  Aligned_cols=32  Identities=19%  Similarity=0.412  Sum_probs=28.0

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      .+.++|+|++|.||++++++ ++|.||+.+..-
T Consensus       231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             CCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            34799999999999999876 999999998754

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=94.79  E-value=0.028  Score=59.79  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=68.3

Q ss_pred             ceeecccCceeEEecccc-----C-cH---HHHHHHHHHHHccCCccc-cceeeecccCCCCCcceEEEEEEec-CCCCc
Q 002376          666 ENLIGSGSFGSVLHNERT-----G-SW---KSFIAECETLRNVRHRNL-VKLITSCSSLDSKNMEFLALVYEFL-SNGSL  734 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~-----~-~~---~~~~~E~~~l~~l~Hpni-v~l~~~~~~~~~~~~~~~~lV~e~~-~~gsL  734 (929)
                      .+.|+.|....+|+...-     + ..   ....+|+.+++.+....+ .++++++.+  .     -++|+||+ ++.++
T Consensus        23 i~~l~gG~tN~~~~~~~~vlR~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~~~~~~~--~-----~~~v~e~i~~g~~l   95 (301)
T 3dxq_A           23 PLERLGGLTNLVFRAGDLCLRIPGKGTEEYINRANEAVAAREAAKAGVSPEVLHVDPA--T-----GVMVTRYIAGAQTM   95 (301)
T ss_dssp             CEEEESCSSEEEEEETTEEEEEECC----CCCHHHHHHHHHHHHHTTSSCCEEEECTT--T-----CCEEEECCTTCEEC
T ss_pred             eeEcCCccccccceeeeEEEECCCCCccceeCHHHHHHHHHHHHHcCCCCceEEEECC--C-----CEEEEeecCCCccC
Confidence            567888888888876110     1 11   123568888877743333 355554321  1     27899999 65455


Q ss_pred             cccc-cccccccccHHHHHHHhhhC--------------------------------------------------CCCCE
Q 002376          735 GDWI-HGERKNELDITSALDYLHND--------------------------------------------------CEVPV  763 (929)
Q Consensus       735 ~~~l-~~~~~~~~~ia~aL~yLH~~--------------------------------------------------~~~~i  763 (929)
                      ...- ........++++.|+-+|+.                                                  .++.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~l  175 (301)
T 3dxq_A           96 SPEKFKTRPGSPARAGEAFRKLHGSGAVFPFRFELFAMIDDYLKVLSTKNVTLPAGYHDVVREAGGVRSALAAHPLPLAA  175 (301)
T ss_dssp             CHHHHHHSTTHHHHHHHHHHHHHTSCCCCSSBCCHHHHHHHHHHHHC--CCCCCTTHHHHHHHHHHHHHHHHSSCCCCEE
T ss_pred             CHhhHhhhHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHHhcCCCcee
Confidence            3210 00011223333344444431                                                  12348


Q ss_pred             EecCCCCCCeeecCCCceEEeccccccc
Q 002376          764 VHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       764 iHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      +|+|+.+.||+ .+++.+.+.||..+..
T Consensus       176 ~HgDl~~~Nil-~~~~~~~lID~e~a~~  202 (301)
T 3dxq_A          176 CHCDPLCENFL-DTGERMWIVDWEYSGM  202 (301)
T ss_dssp             ECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             eccCCCcCCEE-ECCCCEEEEecccccC
Confidence            99999999999 5566789999998864

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=93.96  E-value=0.11  Score=55.75  Aligned_cols=30  Identities=33%  Similarity=0.366  Sum_probs=25.6

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ...++|+|+++.||+++ + .+.|.||+.+..
T Consensus       194 ~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~  223 (328)
T 1zyl_A          194 TVLRLHGDCHAGNILWR-D-GPMFVDLDDARN  223 (328)
T ss_dssp             CCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred             CeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence            34689999999999999 4 899999998763

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=93.86  E-value=0.047  Score=61.25  Aligned_cols=39  Identities=23%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHccCCccc-cceeeecccCCCCCcceEEEEEEecCCCCc
Q 002376          687 KSFIAECETLRNVRHRNL-VKLITSCSSLDSKNMEFLALVYEFLSNGSL  734 (929)
Q Consensus       687 ~~~~~E~~~l~~l~Hpni-v~l~~~~~~~~~~~~~~~~lV~e~~~~gsL  734 (929)
                      ..+.+|..+++.+...++ .++++++.    .     .+||||++|.++
T Consensus       120 ~~li~E~~~l~~L~~~g~~P~l~~~~~----~-----g~v~e~l~G~~l  159 (429)
T 1nw1_A          120 SHLVAESVIFTLLSERHLGPKLYGIFS----G-----GRLEEYIPSRPL  159 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCEEEEET----T-----EEEECCCCEEEC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeC----C-----CEEEEEeCCccc
Confidence            567789999988853333 55666542    1     389999986444

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=93.39  E-value=0.11  Score=56.97  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=27.3

Q ss_pred             CCEEecCCCCCCeeecCC----CceEEeccccccc
Q 002376          761 VPVVHSDLKPGNILLDEE----MTAKVGDFGLARF  791 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~----~~~ki~DfGla~~  791 (929)
                      ..++|+|+.+.||+++++    +.+.+.||..|..
T Consensus       220 ~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~  254 (379)
T 3feg_A          220 VVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY  254 (379)
T ss_dssp             EEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred             cEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence            468999999999999876    7899999998874

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=92.37  E-value=0.17  Score=54.47  Aligned_cols=32  Identities=31%  Similarity=0.399  Sum_probs=27.7

Q ss_pred             CCCEEecCCCCCCeeecCC----CceEEeccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEE----MTAKVGDFGLARF  791 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~----~~~ki~DfGla~~  791 (929)
                      .+.++|||+.+.||+++++    +.+.|.||+.+..
T Consensus       182 ~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~  217 (333)
T 3csv_A          182 DMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL  217 (333)
T ss_dssp             CCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred             CCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence            3479999999999999874    6899999998874

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=91.83  E-value=0.21  Score=56.28  Aligned_cols=36  Identities=17%  Similarity=0.168  Sum_probs=24.8

Q ss_pred             HHHHHHHHccCCccc-cceeeecccCCCCCcceEEEEEEecCCCCc
Q 002376          690 IAECETLRNVRHRNL-VKLITSCSSLDSKNMEFLALVYEFLSNGSL  734 (929)
Q Consensus       690 ~~E~~~l~~l~Hpni-v~l~~~~~~~~~~~~~~~~lV~e~~~~gsL  734 (929)
                      .+|..+++.+...++ .++++++.    .     .+||||+++.++
T Consensus       152 ~~E~~vl~~L~~~gl~P~ll~~~~----~-----G~v~e~I~G~~l  188 (458)
T 2qg7_A          152 EREKKISCILYNKNIAKKIYVFFT----N-----GRIEEFMDGYAL  188 (458)
T ss_dssp             HHHHHHHHHHTTSSSBCCEEEEET----T-----EEEEECCCSEEC
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeC----C-----eEEEEeeCCccC
Confidence            589999999865444 45666651    1     359999987554

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=91.49  E-value=0.13  Score=56.30  Aligned_cols=30  Identities=27%  Similarity=0.490  Sum_probs=25.1

Q ss_pred             CCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++|+|+++.|||++++. +.+.||..+..
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~~  241 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSGF  241 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCEE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCCC
Confidence            4689999999999998665 89999998764

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=89.17  E-value=0.52  Score=33.30  Aligned_cols=29  Identities=7%  Similarity=0.044  Sum_probs=11.7

Q ss_pred             ehhhHHHHHHHHHHHHhhhhhhhhccccc
Q 002376          608 LSIIVTIMAVIAGCFLIVWPIIVRKRKAK  636 (929)
Q Consensus       608 i~i~~~~~~~l~~~~~~~~~~~~rrr~~~  636 (929)
                      ++..+++..++++++...+++++|+|+.+
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~   41 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRHIV   41 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence            33333333333333334444445554443

>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}

Probab=82.60  E-value=0.65  Score=51.55  Aligned_cols=30  Identities=20%  Similarity=0.424  Sum_probs=26.6

Q ss_pred             CCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++|+|+.+.||+ ++++.+.+.||..|..
T Consensus       262 ~~~~H~D~~~~N~l-~~~~~~~~IDwe~a~~  291 (424)
T 3mes_A          262 LVFAHNDLQENNLL-QTQNNIRMIDYEYSAI  291 (424)
T ss_dssp             EEEECSCCCGGGEE-ECSSCEEECCCTTCEE
T ss_pred             ceEECCCCCcccee-cCCCcEEEEecccCCc
Confidence            46899999999999 8888999999998874

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=80.71  E-value=1.2  Score=31.35  Aligned_cols=13  Identities=23%  Similarity=0.644  Sum_probs=5.6

Q ss_pred             hhhhhhhhccccc
Q 002376          624 IVWPIIVRKRKAK  636 (929)
Q Consensus       624 ~~~~~~~rrr~~~  636 (929)
                      ..+++++|+|+.+
T Consensus        28 ~~~~~~~RRRr~~   40 (44)
T 2l2t_A           28 LTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHTTCSS
T ss_pred             HHHHHHhhhhhhh
Confidence            3444444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	929
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	4e-34
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	6e-34
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	8e-32
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-31
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	3e-31
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	4e-31
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	5e-31
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	5e-31
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	9e-31
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-30
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	9e-30
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-29
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	3e-29
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-28
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-28
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-28
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	8e-28
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	2e-27
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-27
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	2e-27
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-27
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	6e-27
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-27
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-26
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-26
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-25
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	1e-25
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-25
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-25
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-24
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-22
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-24
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-05
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-24
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-23
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-22
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-22
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	4e-22
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	8e-22
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	1e-21
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-21
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-20
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-20
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-20
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-20
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	7e-20
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-19
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	1e-19
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	2e-19
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-19
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-19
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-18
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	8e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	5e-17
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	5e-16
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-16
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-15
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	3e-15
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	1e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	1e-14
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-14
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	9e-14
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-08
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-06
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	6e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-06
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	1e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.003

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  130 bits (328), Expect = 4e-34
 Identities = 56/300 (18%), Positives = 104/300 (34%), Gaps = 59/300 (19%)

Query: 652 SYDELRRATGNFSHE---------NLIGSGSFGSVL--HNERTG---------------- 684
           ++++   A   F+ E          +IG+G FG V   H +  G                
Sbjct: 8   TFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYT 67

Query: 685 --SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
               + F++E   +    H N++ L    +         + ++ EF+ NGSL  ++    
Sbjct: 68  EKQRRDFLSEASIMGQFDHPNVIHLEGVVTK-----STPVMIITEFMENGSLDSFLRQND 122

Query: 743 KNE---------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL 793
                         I + + YL +      VH DL   NIL++  +  KV DFGL+RF L
Sbjct: 123 GQFTVIQLVGMLRGIAAGMKYLADMN---YVHRDLAARNILVNSNLVCKVSDFGLSRF-L 178

Query: 794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV--ESNL 851
           E   +  + +S       I +  PE     + ++A DV +      E             
Sbjct: 179 EDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT 238

Query: 852 PENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK 911
            ++V+  ++ + R     +    +            + L C  +    R    + +  L 
Sbjct: 239 NQDVINAIEQDYRLPPPMDCPSALH----------QLMLDCWQKDRNHRPKFGQIVNTLD 288

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (326), Expect = 6e-34
 Identities = 62/297 (20%), Positives = 96/297 (32%), Gaps = 80/297 (26%)

Query: 661 GNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLV 705
           G  +    IGSGSFG+V   +  G                 ++F  E   LR  RH N++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITSALDYLH 756
             +   ++        LA+V ++    SL   +H                     +DYLH
Sbjct: 68  LFMGYSTA------PQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLH 121

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 ++H DLK  NI L E++T K+GDFGLA          S         GSI ++ 
Sbjct: 122 AK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVK----SRWSGSHQFEQLSGSILWMA 174

Query: 817 PEYGLGERP---STAGDV---------------PTSESFAGEFNIVKWVESNLPENVLQV 858
           PE    +     S   DV               P S     +  I       L  ++ +V
Sbjct: 175 PEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKV 234

Query: 859 ---LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
                  +++LM                        C  +    R    + L  ++ 
Sbjct: 235 RSNCPKAMKRLM----------------------AECLKKKRDERPLFPQILASIEL 269

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 8e-32
 Identities = 55/295 (18%), Positives = 99/295 (33%), Gaps = 56/295 (18%)

Query: 666 ENLIGSGSFGSVLHNERTG-----------SWKSFIAECE--TLRNVRHRNLVKLITSCS 712
           +  IG G FG V   +  G             +S+  E E      +RH N++  I + +
Sbjct: 8   QESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADN 67

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLHNDC-----E 760
             D+     L LV ++  +GSL D+++             L   S L +LH +      +
Sbjct: 68  K-DNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGK 126

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             + H DLK  NIL+ +  T  + D GLA       D      +    +G+  Y+ PE  
Sbjct: 127 PAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNH--RVGTKRYMAPEVL 184

Query: 821 LGERPSTAGDV-----------------------PTSESFAGEFNIVKWVESNLPENVLQ 857
                    +                           E +   +  +   + ++ E    
Sbjct: 185 DDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKV 244

Query: 858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
           V + +LR  +  N  Q+ +    +  I+      C   +   R+      + L  
Sbjct: 245 VCEQKLRPNI-PNRWQSCEALRVMAKIM----RECWYANGAARLTALRIKKTLSQ 294

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (305), Expect = 2e-31
 Identities = 49/202 (24%), Positives = 75/202 (37%), Gaps = 41/202 (20%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG----------------SWKSFIAECETLRNVRHRN 703
           ++     IG+GS+G       +  G                  +  ++E   LR ++H N
Sbjct: 5   DYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN 64

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------LDITSA 751
           +V+          +    L +V E+   G L   I    K                +T A
Sbjct: 65  IVRYYDRIID---RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA 121

Query: 752 LDYLH--NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFM 809
           L   H  +D    V+H DLKP N+ LD +   K+GDFGLAR L          S    F+
Sbjct: 122 LKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARIL------NHDTSFAKAFV 175

Query: 810 GSIGYVPPEYGLGERPSTAGDV 831
           G+  Y+ PE       +   D+
Sbjct: 176 GTPYYMSPEQMNRMSYNEKSDI 197

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 3e-31
 Identities = 57/286 (19%), Positives = 99/286 (34%), Gaps = 74/286 (25%)

Query: 662 NFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLIT 709
                  IG G FG V+  +  G            + ++F+AE   +  +RH NLV+L+ 
Sbjct: 8   ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG 67

Query: 710 SCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL----------DITSALDYLHNDC 759
                  +    L +V E+++ GSL D++    ++ L          D+  A++YL  + 
Sbjct: 68  VIV----EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN- 122

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
               VH DL   N+L+ E+  AKV DFGL +            S+       + +  PE 
Sbjct: 123 --NFVHRDLAARNVLVSEDNVAKVSDFGLTKEA---------SSTQDTGKLPVKWTAPEA 171

Query: 820 GLGERPSTAGDV--------------PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ 865
              ++ ST  DV                        ++V  VE     +      P + +
Sbjct: 172 LREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYE 231

Query: 866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK 911
           +M                       +C       R    +   +L+
Sbjct: 232 VM----------------------KNCWHLDAAMRPSFLQLREQLE 255

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 4e-31
 Identities = 51/288 (17%), Positives = 93/288 (32%), Gaps = 74/288 (25%)

Query: 662 NFSHENLIGSGSFGSVLH--------------NERTGSWKSFIAECETLRNVRHRNLVKL 707
                  +G+G FG V                 + + S  +F+AE   ++ ++H+ LV+L
Sbjct: 14  TLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRL 73

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHN 757
               +       E + ++ E++ NGSL D++      +L           I   + ++  
Sbjct: 74  YAVVTQ------EPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEE 127

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                 +H DL+  NIL+ + ++ K+ DFGLAR +       +  ++       I +  P
Sbjct: 128 RN---YIHRDLRAANILVSDTLSCKIADFGLARLI-----EDNEYTAREGAKFPIKWTAP 179

Query: 818 EYGLGERPSTAGDV--------------PTSESFAGEFNIVKWVESNLPENVLQVLDPEL 863
           E       +   DV                         +++ +E             EL
Sbjct: 180 EAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEEL 239

Query: 864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK 911
            QLM                        C  E P  R         L+
Sbjct: 240 YQLM----------------------RLCWKERPEDRPTFDYLRSVLE 265

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-31
 Identities = 38/195 (19%), Positives = 70/195 (35%), Gaps = 40/195 (20%)

Query: 662 NFSHENLIGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVRHRNL 704
           +F   + +G+G+ G V                     +       I E + L       +
Sbjct: 7   DFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 66

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLH 756
           V    +  S        +++  E +  GSL   +    +          + +   L YL 
Sbjct: 67  VGFYGAFYS-----DGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR 121

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 ++H D+KP NIL++     K+ DFG++  L++        S  + F+G+  Y+ 
Sbjct: 122 EKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID--------SMANSFVGTRSYMS 171

Query: 817 PEYGLGERPSTAGDV 831
           PE   G   S   D+
Sbjct: 172 PERLQGTHYSVQSDI 186

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (303), Expect = 5e-31
 Identities = 57/285 (20%), Positives = 102/285 (35%), Gaps = 75/285 (26%)

Query: 666 ENLIGSGSFGSV----------------LHNERT--GSWKSFIAECETLRNVRHRNLVKL 707
           +  IG GSF +V                L + +      + F  E E L+ ++H N+V+ 
Sbjct: 14  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 73

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDC 759
             S  S   K  + + LV E +++G+L  ++   +  ++         I   L +LH   
Sbjct: 74  YDSWES-TVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRT 132

Query: 760 EVPVVHSDLKPGNILL-DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
             P++H DLK  NI +     + K+GD GLA             S     +G+  ++ PE
Sbjct: 133 P-PIIHRDLKCDNIFITGPTGSVKIGDLGLATLK--------RASFAKAVIGTPEFMAPE 183

Query: 819 YGLGERPSTAGDV---------------PTSESFAGEFNIVKWVESNLPENVLQVLDPEL 863
               E+   + DV               P SE         +      P +  +V  PE+
Sbjct: 184 M-YEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEV 242

Query: 864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
           ++++                        C  ++   R  I++ L 
Sbjct: 243 KEII----------------------EGCIRQNKDERYSIKDLLN 265

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 9e-31
 Identities = 62/302 (20%), Positives = 95/302 (31%), Gaps = 74/302 (24%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSVLH--------------NERTGSWKSFIAECE 694
             ++ D       +   E  +G G FG V                   T S ++F+ E +
Sbjct: 5   QGLAKDAWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQ 64

Query: 695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
            ++ +RH  LV+L    S       E + +V E++S GSL D++ GE             
Sbjct: 65  VMKKLRHEKLVQLYAVVS------EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDM 118

Query: 746 -LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
              I S + Y+        VH DL+  NIL+ E +  KV DFGLAR +       +  ++
Sbjct: 119 AAQIASGMAYVERMN---YVHRDLRAANILVGENLVCKVADFGLARLI-----EDNEYTA 170

Query: 805 THVFMGSIGYVPPEYGLGERPSTAGDV--------------PTSESFAGEFNIVKWVESN 850
                  I +  PE  L  R +   DV                         ++  VE  
Sbjct: 171 RQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG 230

Query: 851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL 910
                       L  LM                        C  + P  R         L
Sbjct: 231 YRMPCPPECPESLHDLM----------------------CQCWRKEPEERPTFEYLQAFL 268

Query: 911 KS 912
           + 
Sbjct: 269 ED 270

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (295), Expect = 5e-30
 Identities = 59/288 (20%), Positives = 91/288 (31%), Gaps = 66/288 (22%)

Query: 662 NFSHENLIGSGSFGSVLH--------------NERTGSWKSFIAECETLRNVRHRNLVKL 707
             +    IGSG FG V                 E   S + FI E E +  + H  LV+L
Sbjct: 6   ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQL 65

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD------ITSALDYLHNDCEV 761
              C          + LV+EF+ +G L D++  +R                + +    E 
Sbjct: 66  YGVCL-----EQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA 120

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
            V+H DL   N L+ E    KV DFG+ RF+          +S+      + +  PE   
Sbjct: 121 CVIHRDLAARNCLVGENQVIKVSDFGMTRFV-----LDDQYTSSTGTKFPVKWASPEVFS 175

Query: 822 GERPSTAGDV--------------PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM 867
             R S+  DV                         +V+ + +       ++    + Q+M
Sbjct: 176 FSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIM 235

Query: 868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE 915
                                   C  E P  R      LR+L    E
Sbjct: 236 ----------------------NHCWKERPEDRPAFSRLLRQLAEIAE 261

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 9e-30
 Identities = 54/309 (17%), Positives = 96/309 (31%), Gaps = 77/309 (24%)

Query: 655 ELRRATGNFSHENL-IGSGSFGSVL-------------------HNERTGSWKSFIAECE 694
           +L     N    ++ +G G+FGSV                            +  + E +
Sbjct: 2   KLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQ 61

Query: 695 TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------- 745
            +  + +  +V+LI  C +        L LV E    G L  ++ G+R+           
Sbjct: 62  IMHQLDNPYIVRLIGVCQAEA------LMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL 115

Query: 746 LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISST 805
             ++  + YL        VH DL   N+LL     AK+ DFGL++ L     + S  ++ 
Sbjct: 116 HQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKAL---GADDSYYTAR 169

Query: 806 HVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEF--------------NIVKWVESNL 851
                 + +  PE     + S+  DV +      E                ++ ++E   
Sbjct: 170 SAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK 229

Query: 852 PENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK 911
                    PEL  LM                        C       R       +R++
Sbjct: 230 RMECPPECPPELYALM----------------------SDCWIYKWEDRPDFLTVEQRMR 267

Query: 912 SSQEILLKQ 920
           +    L  +
Sbjct: 268 ACYYSLASK 276

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 1e-29
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 66/284 (23%)

Query: 666 ENLIGSGSFGSV----LHNERTG----------------SWKSFIAECETLRNVRHRNLV 705
           +  +GSG+FG+V       ++                       +AE   ++ + +  +V
Sbjct: 12  DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIV 71

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYLHN 757
           ++I  C        E   LV E    G L  ++   R  +          ++  + YL  
Sbjct: 72  RMIGIC------EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEE 125

Query: 758 DCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPP 817
                 VH DL   N+LL  +  AK+ DFGL++ L     +++   +       + +  P
Sbjct: 126 SN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR---ADENYYKAQTHGKWPVKWYAP 179

Query: 818 EYGLGERPSTAGDVPTSESFAGEFNIVKW---------VESNLPENVLQVLDPELRQLMT 868
           E     + S+  DV         F ++ W                 V  +L+   R    
Sbjct: 180 ECINYYKFSSKSDV-------WSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCP 232

Query: 869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
           +   + +            +   C T     R G      RL++
Sbjct: 233 AGCPREMY----------DLMNLCWTYDVENRPGFAAVELRLRN 266

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-29
 Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 48/275 (17%)

Query: 662 NFSHENLIGSGSFGSVLH--------------NERTGSWKSFIAECETLRNVRHRNLVKL 707
           + +    +G+G FG V +               E + S   FI E + + N+ H  LV+L
Sbjct: 5   DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQL 64

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHND 758
              C+         + ++ E+++NG L +++   R             D+  A++YL + 
Sbjct: 65  YGVCTK-----QRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK 119

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
                +H DL   N L++++   KV DFGL+R++          +S+      + + PPE
Sbjct: 120 Q---FLHRDLAARNCLVNDQGVVKVSDFGLSRYV-----LDDEYTSSVGSKFPVRWSPPE 171

Query: 819 YGLGERPSTAGDVPTSESFAGEFNIVKWV--ESNLPENVLQVLDPELRQLMTSNESQTIQ 876
             +  + S+  D+        E   +  +  E        + +   LR       S+ + 
Sbjct: 172 VLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVY 231

Query: 877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK 911
                     ++  SC  E    R   +  L  + 
Sbjct: 232 ----------TIMYSCWHEKADERPTFKILLSNIL 256

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (288), Expect = 1e-28
 Identities = 58/304 (19%), Positives = 95/304 (31%), Gaps = 76/304 (25%)

Query: 640 VSALFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVL--HNERTG------------- 684
           V+ LF    P+  + +LR           IG GSFG+V    + R               
Sbjct: 4   VAELFFKDDPEKLFSDLRE----------IGHGSFGAVYFARDVRNSEVVAIKKMSYSGK 53

Query: 685 ----SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG 740
                W+  I E   L+ +RH N ++                 LV E+    +       
Sbjct: 54  QSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL-----REHTAWLVMEYCLGSASDLLEVH 108

Query: 741 ERKNE--------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
           ++  +              L YLH      ++H D+K GNILL E    K+GDFG A   
Sbjct: 109 KKPLQEVEIAAVTHGALQGLAYLH---SHNMIHRDVKAGNILLSEPGLVKLGDFGSASI- 164

Query: 793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGD--------VPTSESFAGEFNIV 844
                    ++  + F+G+  ++ PE  L                 +   E    +  + 
Sbjct: 165 ---------MAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLF 215

Query: 845 KWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIR 904
                +   ++ Q   P L+    S               +     SC  + P  R    
Sbjct: 216 NMNAMSALYHIAQNESPALQSGHWSEY---------FRNFV----DSCLQKIPQDRPTSE 262

Query: 905 EALR 908
             L+
Sbjct: 263 VLLK 266

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 2e-28
 Identities = 51/281 (18%), Positives = 94/281 (33%), Gaps = 49/281 (17%)

Query: 662 NFSHENLIGSGSFGSV--------------------LHNERT-GSWKSFIAECETLRNVR 700
             + + +IG+G FG V                    L    T      F+ E   +    
Sbjct: 8   CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFS 67

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYL----- 755
           H N+++L    S         + ++ E++ NG+L  ++  E+  E  +   +  L     
Sbjct: 68  HHNIIRLEGVISKYKP-----MMIITEYMENGALDKFLR-EKDGEFSVLQLVGMLRGIAA 121

Query: 756 --HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
                  +  VH DL   NIL++  +  KV DFGL+R L    D+  +  +T      I 
Sbjct: 122 GMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLE---DDPEATYTTSGGKIPIR 178

Query: 814 YVPPEYGLGERPSTAGDVPTSESFAGEFNIVK--WVESNLPENVLQVLDPELRQLMTSNE 871
           +  PE     + ++A DV +      E                V++ ++   R     + 
Sbjct: 179 WTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDC 238

Query: 872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
              I            + + C  +    R    + +  L  
Sbjct: 239 PSAIY----------QLMMQCWQQERARRPKFADIVSILDK 269

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 3e-28
 Identities = 54/290 (18%), Positives = 93/290 (32%), Gaps = 85/290 (29%)

Query: 662 NFSHENLIGSGSFGSVL-------------------HNERTGSWKSFIAECETLRNVRHR 702
           +F     +G G FG+V                      E+ G       E E   ++RH 
Sbjct: 7   DFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHP 66

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDY 754
           N+++L          +   + L+ E+   G++   +    K +         ++ +AL Y
Sbjct: 67  NILRLYGYFH-----DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY 121

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
            H      V+H D+KP N+LL      K+ DFG +             S      G++ Y
Sbjct: 122 CH---SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS--------SRRTTLCGTLDY 170

Query: 815 VPPEYGLGERPSTAGDV---------------P-TSESFAGEFNIVKWVESNLPENVLQV 858
           +PPE   G       D+               P  + ++   +  +  VE   P+ V   
Sbjct: 171 LPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV--- 227

Query: 859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
                R L++                           +P  R  +RE L 
Sbjct: 228 -TEGARDLIS----------------------RLLKHNPSQRPMLREVLE 254

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 8e-28
 Identities = 47/267 (17%), Positives = 99/267 (37%), Gaps = 41/267 (15%)

Query: 667 NLIGSGSFGSV----------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITS 710
             +G G+FG V                +  +     + ++ E + L +  H N+VKL+ +
Sbjct: 18  GELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDA 77

Query: 711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHNDCEV 761
               ++     L ++ EF + G++   +    +                AL+YLH   + 
Sbjct: 78  FYYENN-----LWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLH---DN 129

Query: 762 PVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
            ++H DLK GNIL   +   K+ DFG++           +I     F+G+  ++ PE  +
Sbjct: 130 KIIHRDLKAGNILFTLDGDIKLADFGVSAKN------TRTIQRRDSFIGTPYWMAPEVVM 183

Query: 822 GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCL 881
            E          ++ ++    +++  E   P + L      +   +  +E  T+      
Sbjct: 184 CETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELN--PMRVLLKIAKSEPPTLAQPSRW 241

Query: 882 ITIIGSVGLSCTTESPGGRIGIREALR 908
            +        C  ++   R    + L+
Sbjct: 242 SSNFKDFLKKCLEKNVDARWTTSQLLQ 268

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-27
 Identities = 55/287 (19%), Positives = 89/287 (31%), Gaps = 56/287 (19%)

Query: 662 NFSHENLIGSGSFGSV---LHNERTG-------------------SWKSFIAECETLRNV 699
           +      +G GSFG V     +  +G                   +   FI E   + ++
Sbjct: 9   DLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL 68

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN---------ELDITS 750
            HRNL++L     +        + +V E    GSL D +   + +          + +  
Sbjct: 69  DHRNLIRLYGVVLT------PPMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAE 122

Query: 751 ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMG 810
            + YL +      +H DL   N+LL      K+GDFGL R L     N            
Sbjct: 123 GMGYLESKR---FIHRDLAARNLLLATRDLVKIGDFGLMRAL---PQNDDHYVMQEHRKV 176

Query: 811 SIGYVPPEYGLGERPSTAGDVPTSESFAGE---FNIVKWVESNLPENVLQVLDPELRQLM 867
              +  PE       S A D         E   +    W+  N  + + ++     R   
Sbjct: 177 PFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPR 236

Query: 868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ 914
             +  Q I           +V + C    P  R         L  +Q
Sbjct: 237 PEDCPQDIY----------NVMVQCWAHKPEDRPTFVALRDFLLEAQ 273

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-27
 Identities = 56/289 (19%), Positives = 91/289 (31%), Gaps = 75/289 (25%)

Query: 661 GNFSHENLIGSGSFGSVL--HNERTG---------------SWKSFIAECETLRNVRHRN 703
            ++     +G G++G V    N  T                  ++   E    + + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDYL 755
           +VK          +      L  E+ S G L D I  +              + + + YL
Sbjct: 65  VVKFYGHR-----REGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYL 119

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H      + H D+KP N+LLDE    K+ DFGLA     R +N+  + +     G++ YV
Sbjct: 120 HGIG---ITHRDIKPENLLLDERDNLKISDFGLATVF--RYNNRERLLNK--MCGTLPYV 172

Query: 816 PPEYGLGERPST----------------AGDVPTSESFAGEFNIVKWVESNLPENVLQVL 859
            PE                         AG++P  +          W E     N  + +
Sbjct: 173 APELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKI 232

Query: 860 DPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
           D     L+                           E+P  RI I +  +
Sbjct: 233 DSAPLALLH----------------------KILVENPSARITIPDIKK 259

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (277), Expect = 2e-27
 Identities = 50/291 (17%), Positives = 100/291 (34%), Gaps = 50/291 (17%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSVLH---------------NERTGSWKSFIAEC 693
              +YD+      + + ++ +G G +G V                  E T   + F+ E 
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEA 64

Query: 694 ETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALD 753
             ++ ++H NLV+L+  C+           ++ EF++ G+L D++    + E+     L 
Sbjct: 65  AVMKEIKHPNLVQLLGVCTREPP-----FYIITEFMTYGNLLDYLRECNRQEVSAVVLLY 119

Query: 754 YL-------HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
                        +   +H DL   N L+ E    KV DFGL+R +        + ++  
Sbjct: 120 MATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLM-----TGDTYTAHA 174

Query: 807 VFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEF-----NIVKWVESNLPENVLQVLDP 861
                I +  PE     + S   DV    +F           +          V ++L+ 
Sbjct: 175 GAKFPIKWTAPESLAYNKFSIKSDV---WAFGVLLWEIATYGMSPYPGIDLSQVYELLEK 231

Query: 862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
           + R        + +            +  +C   +P  R    E  +  ++
Sbjct: 232 DYRMERPEGCPEKVY----------ELMRACWQWNPSDRPSFAEIHQAFET 272

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 3e-27
 Identities = 56/320 (17%), Positives = 101/320 (31%), Gaps = 75/320 (23%)

Query: 643 LFKVCHPKISYDELRRATGNFSHENLIGSGSFGSVLH--------------------NER 682
           +  V H  I    L     +F    +IG G FG V H                       
Sbjct: 14  VQAVQHVVIGPSSLIV---HF--NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITD 68

Query: 683 TGSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER 742
            G    F+ E   +++  H N++ L+  C   +   +    +V  ++ +G L ++I  E 
Sbjct: 69  IGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL----VVLPYMKHGDLRNFIRNET 124

Query: 743 KNELDITSALDY-------LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
            N   +   + +       +        VH DL   N +LDE+ T KV DFGLAR + + 
Sbjct: 125 HN-PTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYD- 182

Query: 796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV--------------PTSESFAGEF 841
                S+ +       + ++  E    ++ +T  DV                       F
Sbjct: 183 -KEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF 241

Query: 842 NIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRI 901
           +I  ++         +     L ++M                      L C       R 
Sbjct: 242 DITVYLLQGRRLLQPEYCPDPLYEVM----------------------LKCWHPKAEMRP 279

Query: 902 GIREALRRLKSSQEILLKQQ 921
              E + R+ +     + + 
Sbjct: 280 SFSELVSRISAIFSTFIGEH 299

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (274), Expect = 6e-27
 Identities = 43/199 (21%), Positives = 76/199 (38%), Gaps = 33/199 (16%)

Query: 657 RRATGNFSHENLIGSGSFGSVL-------------------HNERTGSWKSFIAECETLR 697
           ++   +F    ++G GSF +V+                   H  +         E + + 
Sbjct: 4   KKRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMS 63

Query: 698 NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITSAL 752
            + H   VKL  +      ++ E L     +  NG L  +I       E          +
Sbjct: 64  RLDHPFFVKLYFTF-----QDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIV 118

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
             L       ++H DLKP NILL+E+M  ++ DFG A+     +  +S  +  + F+G+ 
Sbjct: 119 SALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKV----LSPESKQARANSFVGTA 174

Query: 813 GYVPPEYGLGERPSTAGDV 831
            YV PE    +    + D+
Sbjct: 175 QYVSPELLTEKSACKSSDL 193

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 8e-27
 Identities = 41/195 (21%), Positives = 76/195 (38%), Gaps = 37/195 (18%)

Query: 660 TGNFSHENLIGSGSFGSV----------------LHNERTGSWKSFIAECETLRNVRHRN 703
              ++    IG G+ G+V                ++ ++    +  I E   +R  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLH 756
           +V  + S         + L +V E+L+ GSL D +     +E        +   AL++LH
Sbjct: 79  IVNYLDSYLV-----GDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLH 133

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 V+H D+K  NILL  + + K+ DFG    +          S     +G+  ++ 
Sbjct: 134 ---SNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI------TPEQSKRSTMVGTPYWMA 184

Query: 817 PEYGLGERPSTAGDV 831
           PE    +      D+
Sbjct: 185 PEVVTRKAYGPKVDI 199

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (269), Expect = 3e-26
 Identities = 61/326 (18%), Positives = 105/326 (32%), Gaps = 86/326 (26%)

Query: 649 PKISYDELRRATGNFSHENLIGSGSFGSV-------LHNERTGS---------------W 686
           PK+   E  R   N  +   IG G+FG V       L      +                
Sbjct: 3   PKLLSLEYPR--NNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQ 60

Query: 687 KSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE- 745
             F  E   +    + N+VKL+  C        + + L++E+++ G L +++     +  
Sbjct: 61  ADFQREAALMAEFDNPNIVKLLGVC-----AVGKPMCLLFEYMAYGDLNEFLRSMSPHTV 115

Query: 746 -------------------------------LDITSALDYLHNDCEVPVVHSDLKPGNIL 774
                                            + + + YL    E   VH DL   N L
Sbjct: 116 CSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLS---ERKFVHRDLATRNCL 172

Query: 775 LDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDV--- 831
           + E M  K+ DFGL+R +     +     +       I ++PPE     R +T  DV   
Sbjct: 173 VGENMVVKIADFGLSRNI----YSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAY 228

Query: 832 --PTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVG 889
                E F+       +      E +  V D  +       E+  ++L++        + 
Sbjct: 229 GVVLWEIFSYGLQP--YYGMAHEEVIYYVRDGNILAC---PENCPLELYN--------LM 275

Query: 890 LSCTTESPGGRIGIREALRRLKSSQE 915
             C ++ P  R       R L+   E
Sbjct: 276 RLCWSKLPADRPSFCSIHRILQRMCE 301

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 4e-26
 Identities = 64/300 (21%), Positives = 108/300 (36%), Gaps = 51/300 (17%)

Query: 658 RATGNFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNV 699
                +     IG G+FG V                  + NE+ G   + + E + L+ +
Sbjct: 7   DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 66

Query: 700 RHRNLVKLITSCSSLDSKNMEF---LALVYEFLSNGSLGDWIHGERKNELD-----ITSA 751
           +H N+V LI  C +  S        + LV++F  +   G   +   K  L      +   
Sbjct: 67  KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 126

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L+ L+      ++H D+K  N+L+  +   K+ DFGLAR     +   S  +     + +
Sbjct: 127 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAF--SLAKNSQPNRYTNRVVT 184

Query: 812 IGYVPPEYGLGERP-STAGDVPT-----SESFAGE------------FNIVKWVESNLPE 853
           + Y PPE  LGER      D+       +E +                 I +   S  PE
Sbjct: 185 LWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPE 244

Query: 854 NVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGL-----SCTTESPGGRIGIREALR 908
               V + EL + +   + Q  ++ D L   +                P  RI   +AL 
Sbjct: 245 VWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 304

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score =  107 bits (268), Expect = 1e-25
 Identities = 54/313 (17%), Positives = 98/313 (31%), Gaps = 82/313 (26%)

Query: 662 NFSHENLIGSGSFGSV----------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
           ++     +G+G+FG V                +        ++   E +T+  +RH  LV
Sbjct: 27  HYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLV 86

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLH 756
            L  +      ++   + ++YEF+S G L + +  E               +   L ++H
Sbjct: 87  NLHDAF-----EDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMH 141

Query: 757 NDCEVPVVHSDLKPGNILL--DEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
            +     VH DLKP NI+         K+ DFGL   L           S  V  G+  +
Sbjct: 142 ENN---YVHLDLKPENIMFTTKRSNELKLIDFGLTAHL-------DPKQSVKVTTGTAEF 191

Query: 815 VPPEYGLGERPSTAGDVP----------------TSESFAGEFNIVKWVESNLPENVLQV 858
             PE   G+      D+                   E+       VK  + N+ ++    
Sbjct: 192 AAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSG 251

Query: 859 LDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSSQEI 916
           +  + +  +                             P  R+ I +AL    L      
Sbjct: 252 ISEDGKDFIR----------------------KLLLADPNTRMTIHQALEHPWLTPGNAP 289

Query: 917 LLKQQVPNGKTKS 929
               Q+P+ +   
Sbjct: 290 GRDSQIPSSRYTK 302

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 57/323 (17%), Positives = 100/323 (30%), Gaps = 96/323 (29%)

Query: 648 HPKISYDELRRATGNFSHENLIGSGSFGSVL--HNERTG-----------------SWKS 688
           +P + ++       +   +++IG G+FG VL    ++ G                   + 
Sbjct: 4   YPVLDWN-------DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRD 56

Query: 689 FIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD 747
           F  E E L  +  H N++ L+ +C     ++  +L L  E+  +G+L D++   R  E D
Sbjct: 57  FAGELEVLCKLGHHPNIINLLGAC-----EHRGYLYLAIEYAPHGNLLDFLRKSRVLETD 111

Query: 748 ---------------------ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF 786
                                       +    +   +H DL   NIL+ E   AK+ DF
Sbjct: 112 PAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADF 171

Query: 787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPT------------S 834
           GL+R        Q       +    + ++  E       +T  DV +             
Sbjct: 172 GLSRG-------QEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGG 224

Query: 835 ESFAGE--FNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSC 892
             + G     + + +            D E+  LM                        C
Sbjct: 225 TPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLM----------------------RQC 262

Query: 893 TTESPGGRIGIREALRRLKSSQE 915
             E P  R    + L  L    E
Sbjct: 263 WREKPYERPSFAQILVSLNRMLE 285

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 45/315 (14%), Positives = 93/315 (29%), Gaps = 93/315 (29%)

Query: 662 NFSHENLIGSGSFGSV----------------------LHNERTGSWKSFIAECETLRNV 699
           N     ++GSG+FG V                           +   ++ ++E + +  +
Sbjct: 38  NLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQL 97

Query: 700 -RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------- 745
             H N+V L+ +C+         + L++E+   G L +++  +R+               
Sbjct: 98  GSHENIVNLLGACTLSG-----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRL 152

Query: 746 ------------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG 787
                               +   +++L        VH DL   N+L+      K+ DFG
Sbjct: 153 EEEEDLNVLTFEDLLCFAYQVAKGMEFLE---FKSCVHRDLAARNVLVTHGKVVKICDFG 209

Query: 788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV 847
           LAR +     + S+          + ++ PE       +   DV         + I+ W 
Sbjct: 210 LARDI----MSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDV-------WSYGILLWE 258

Query: 848 ----------ESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESP 897
                        +  N  +++    +       ++ I            +  SC     
Sbjct: 259 IFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIY----------IIMQSCWAFDS 308

Query: 898 GGRIGIREALRRLKS 912
             R         L  
Sbjct: 309 RKRPSFPNLTSFLGC 323

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 1e-25
 Identities = 45/289 (15%), Positives = 90/289 (31%), Gaps = 69/289 (23%)

Query: 663 FSHENLIGSGSFGSV---------------------LHNERTGSWKSFIAECETLRNVRH 701
           F    ++GSG+FG+V                            + K  + E   + +V +
Sbjct: 11  FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 70

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSAL 752
            ++ +L+  C +        + L+ + +  G L D++   + N          + I   +
Sbjct: 71  PHVCRLLGICLT------STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGM 124

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
           +YL +     +VH DL   N+L+      K+ DFGLA+ L      +            I
Sbjct: 125 NYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL----GAEEKEYHAEGGKVPI 177

Query: 813 GYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV---------ESNLPENVLQVLDPEL 863
            ++  E  L           T +S    + +  W          +      +  +L+   
Sbjct: 178 KWMALESILHRI-------YTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGE 230

Query: 864 RQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
           R       +  +            + + C       R   RE +     
Sbjct: 231 RLPQPPICTIDVY----------MIMVKCWMIDADSRPKFRELIIEFSK 269

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 1e-24
 Identities = 56/297 (18%), Positives = 95/297 (31%), Gaps = 79/297 (26%)

Query: 666 ENLIGSGSFGSVL--------------------HNERTGSWKSFIAECETLRNVRHRNLV 705
              IG G FG V                     +       + F+ E  T+R   H ++V
Sbjct: 12  GRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIV 71

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDY-------LHND 758
           KLI   +         + ++ E  + G L  ++   RK  LD+ S + Y       L   
Sbjct: 72  KLIGVITE------NPVWIIMELCTLGELRSFLQ-VRKYSLDLASLILYAYQLSTALAYL 124

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPE 818
                VH D+   N+L+      K+GDFGL+R++       S+          I ++ PE
Sbjct: 125 ESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM-----EDSTYYKASKGKLPIKWMAPE 179

Query: 819 YGLGERPSTAGDVP--------------TSESFAGEFNIVKWVESNLPENVLQVLDPELR 864
                R ++A DV                        +++  +E+     +     P L 
Sbjct: 180 SINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLY 239

Query: 865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ 921
            LM                        C    P  R    E   +L +    +L+++
Sbjct: 240 SLM----------------------TKCWAYDPSRRPRFTELKAQLST----ILEEE 270

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  104 bits (259), Expect = 2e-24
 Identities = 82/388 (21%), Positives = 142/388 (36%), Gaps = 29/388 (7%)

Query: 73  VIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQ 132
            +   L    +  T+S    +L  + ++Q     +  ++   +  L  L  +N S N L 
Sbjct: 24  KMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLT 79

Query: 133 GELPV-NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANL 191
              P+ N++KL ++ M +     IT       L  L          + L      +   L
Sbjct: 80  DITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 139

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
             + +S +  L  L        G   + +  + +L  L              V   L NL
Sbjct: 140 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNL 199

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
              I   N+ +   P     LTN+  + +  N L+      L +L  L   ++  N+I  
Sbjct: 200 ESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQI-- 253

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
                  S +  L+  T L  L L  NQ     P      +   +   L  N    +  +
Sbjct: 254 -------SNLAPLSGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDIS 301

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID 431
            I  L++LT L L +N+IS   P+    L  LQ L  A N++     +SLANL  +N + 
Sbjct: 302 PISNLKNLTYLTLYFNNISDISPV--SSLTKLQRLFFANNKVSD--VSSLANLTNINWLS 357

Query: 432 LSGNELTGEIPISFGNFQSLLSIDLSNN 459
              N+++   P    N   +  + L++ 
Sbjct: 358 AGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score =  103 bits (258), Expect = 2e-24
 Identities = 92/414 (22%), Positives = 150/414 (36%), Gaps = 63/414 (15%)

Query: 140 SKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRL 199
           + L E     L    +T  V+   L  + +LQ    G           I ++    +  L
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-----------IKSI--DGVEYL 65

Query: 200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFN 259
            NL  ++ + N+L    P  + N+T LV + + +NQ+    P      L  L  F     
Sbjct: 66  NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123

Query: 260 RFTGKIPGS--------------LHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG 305
                   +              +  L+ +  ++      + T    L NL  L   +I 
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHI 365
            NK+        L+ + SL  +          NQ     P         L +L L GN +
Sbjct: 184 SNKVSDISVLAKLTNLESLIAT---------NNQISDITPL---GILTNLDELSLNGNQL 231

Query: 366 YGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLK 425
                 ++  L +LT LDL+ N IS   P+    L  L  L L  N+I    P  LA L 
Sbjct: 232 KD--IGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISNISP--LAGLT 285

Query: 426 KLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVT 485
            L  ++L+ N    E      N ++L  + L  N I+   P          +S L  +  
Sbjct: 286 ALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDISP----------VSSLTKLQR 333

Query: 486 IDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
           +  ++N +S    +SL N  ++  L   +NQ S   P  +A L  +  L L+  
Sbjct: 334 LFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 96.6 bits (239), Expect = 7e-22
 Identities = 79/421 (18%), Positives = 149/421 (35%), Gaps = 57/421 (13%)

Query: 166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTS 225
            L        GK  +  ++  +       DL ++  L+   L I  + G     +  + +
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT-------DLDQVTTLQADRLGIKSIDG-----VEYLNN 67

Query: 226 LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLL 285
           L  +  ++NQL    P      L  L+D +   N+     P +         +       
Sbjct: 68  LTQINFSNNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 124

Query: 286 EGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIP 345
              L           + N                   ++++ + L+ L        G   
Sbjct: 125 IDPLKNLTNLNRLELSSN-------------------TISDISALSGLTSLQQLSFGNQV 165

Query: 346 ESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV 405
             +   +N  +   L  +       + + +L +L  L  + N IS   P+ I     L  
Sbjct: 166 TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDE 223

Query: 406 LGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNI 465
           L L GN++      +LA+L  L  +DL+ N+++   P        L  + L  N+I+   
Sbjct: 224 LSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 279

Query: 466 PKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIV 525
           P          ++ L  +  ++L++N L    P    N K+L  L + +N  S   P  V
Sbjct: 280 P----------LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP--V 325

Query: 526 AELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKG 585
           + L  L+ L  ++NK+S    S L NL  +  L+   N +  + P       ++ + L  
Sbjct: 326 SSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTPLAN-LTRITQLGLND 382

Query: 586 N 586
            
Sbjct: 383 Q 383

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  102 bits (254), Expect = 2e-24
 Identities = 78/320 (24%), Positives = 123/320 (38%), Gaps = 29/320 (9%)

Query: 28  TDKEALMSFKSQISQESPSSPLSYWNPSSSPC--TWPGVICNNFGN--RVIGLNLSSFGL 83
            DK+AL+  K  +      + LS W P++  C  TW GV+C+      RV  L+LS   L
Sbjct: 6   QDKQALLQIKKDLG---NPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 84  EG--TISPHIGNLSFLRSIQLQNN-KLSGNLPREIGNLFRLRVLNISFNNLQGELPVNIS 140
                I   + NL +L  + +     L G +P  I  L +L  L I+  N+ G +P  +S
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 141 KLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLE 200
           ++  L  LD   N ++       + +L +L  + F  N + G+IP S  +      S   
Sbjct: 123 QIKTLVTLDFSYNALS-GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181

Query: 201 NLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNR 260
           +        NRL G +P T  N+         +   G        D     +        
Sbjct: 182 S-------RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 261 FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSF 320
           F            N+  + + +N + GTLP GL  L FL + N+ FN +           
Sbjct: 235 FDLGKV---GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-------- 283

Query: 321 ITSLTNSTHLNYLALDGNQF 340
           I    N    +  A   N+ 
Sbjct: 284 IPQGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.8 bits (221), Expect = 4e-20
 Identities = 73/269 (27%), Positives = 119/269 (44%), Gaps = 13/269 (4%)

Query: 325 TNSTHLNYLALDGNQFEGK--IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLL 382
           T +  +N L L G        IP S+ N          G N++ G IP +I +L  L  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 383 DLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIP 442
            +++ ++SG IP  + Q++ L  L  + N + G +P S+++L  L  I   GN ++G IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 443 ISFGNFQSLLS-IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSL 501
            S+G+F  L + + +S NR+ G IP           +     +       ++     + L
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIP----------PTFANLNLAFVDLSRNMLEGDASVL 216

Query: 502 KNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT 561
                  + +             V   K L  LDL +N++ G++P  L  L+ L SLN++
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 562 FNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
           FNNL G +P  G  +         N  LC
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 73.2 bits (178), Expect = 2e-14
 Identities = 60/287 (20%), Positives = 107/287 (37%), Gaps = 18/287 (6%)

Query: 159 VTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTIN-RLAGTVP 217
           V  D       +  L+     L    P      IPS L+ L  L  L +     L G +P
Sbjct: 41  VLCDTDTQTYRVNNLDLSGLNLPKPYP------IPSSLANLPYLNFLYIGGINNLVGPIP 94

Query: 218 STIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQI 277
             I  +T L +L +           D    +  L+   + +N  +G +P S+ +L N+  
Sbjct: 95  PAIAKLTQLHYLYITHTN-VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 278 IRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDG 337
           I    N + G +P   G+   L T        +                  +LN   +D 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL---------TGKIPPTFANLNLAFVDL 204

Query: 338 NQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI 397
           ++   +   S+   S++ ++      +        +G  ++L  LDL  N I G +P  +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264

Query: 398 GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPIS 444
            QL+ L  L ++ N + G IP    NL++ +    + N+     P+ 
Sbjct: 265 TQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 72.1 bits (175), Expect = 4e-14
 Identities = 63/269 (23%), Positives = 101/269 (37%), Gaps = 12/269 (4%)

Query: 194 SDLSRLENLKVLDLTINRLAG--TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
              ++   +  LDL+   L     +PS++ N+  L  L +                L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                     +G IP  L  +  +  +  ++N L GTLPP + +LP L       N+I  
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
           +  D   SF    T+ T         N+  GKIP +  N +           ++     +
Sbjct: 164 AIPDSYGSFSKLFTSMTISR------NRLTGKIPPTFANLNL---AFVDLSRNMLEGDAS 214

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQID 431
            +      T       +       ++G  + L  L L  N I G +P  L  LK L+ ++
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 432 LSGNELTGEIPISFGNFQSLLSIDLSNNR 460
           +S N L GEIP   GN Q       +NN+
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 56/288 (19%), Positives = 95/288 (32%), Gaps = 33/288 (11%)

Query: 257 CFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG--TLPPGLGNLPFLRTYNIGFNKIVSSGD 314
           C   + G +  +      +  + ++   L     +P  L NLP+L    IG    +    
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 315 DEGLSFITSLTNST------------------HLNYLALDGNQFEGKIPESIGNFSNELS 356
              ++ +T L                       L  L    N   G +P SI +  N + 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGG 416
                GN I G IP S G    L        +      I                 +  G
Sbjct: 154 I-TFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 417 IPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEE 476
             + L    K  Q                G  ++L  +DL NNRI G +        P+ 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTL--------PQG 263

Query: 477 ISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQF--SGPIP 522
           +++L+ + ++++S N+L G +P    N +  +    A N+     P+P
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 3e-05
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 419 NSLANLKKLNQIDLSGNELTG--EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEE 476
           ++     ++N +DLSG  L     IP S  N   L  + +            ++ P+P  
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-------NLVGPIPPA 96

Query: 477 ISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDL 536
           I++L  +  + ++  ++SG +P+ L   K+L  L  +YN  SG +P  ++ L  L  +  
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156

Query: 537 SSNKLSGSIPSDLQNLQALRSLNLTFNN 564
             N++SG+IP    +   L +      N
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRN 184

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 7e-24
 Identities = 45/303 (14%), Positives = 96/303 (31%), Gaps = 74/303 (24%)

Query: 662 NFSHENLIGSGSFGSVL----------------------HNERTGSWKSFIAECETLRNV 699
             S    +G+G+FG V+                       +      ++ ++E + L  +
Sbjct: 24  RLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYL 83

Query: 700 -RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE------------- 745
             H N+V L+ +C+           ++ E+   G L +++  +R +              
Sbjct: 84  GNHMNIVNLLGACTIGGP-----TLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDD 138

Query: 746 -------------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                          +   + +L +      +H DL   NILL      K+ DFGLAR +
Sbjct: 139 ELALDLEDLLSFSYQVAKGMAFLASKN---CIHRDLAARNILLTHGRITKICDFGLARDI 195

Query: 793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGE---FNIVKWVES 849
                N S+          + ++ PE       +   DV +   F  E        +   
Sbjct: 196 ----KNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGM 251

Query: 850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR 909
            +     +++    R L   +    +            +  +C    P  R   ++ ++ 
Sbjct: 252 PVDSKFYKMIKEGFRMLSPEHAPAEMY----------DIMKTCWDADPLKRPTFKQIVQL 301

Query: 910 LKS 912
           ++ 
Sbjct: 302 IEK 304

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 99.0 bits (246), Expect = 2e-23
 Identities = 40/196 (20%), Positives = 76/196 (38%), Gaps = 28/196 (14%)

Query: 660 TGNFSHENLIGSGSFGSVL--HNERTG-----------------SWKSFIAECETLRNVR 700
           +  +    ++G G    V    + R                    +  F  E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-----ITSALDYL 755
           H  +V +  +  + ++       +V E++   +L D +H E           I  A   L
Sbjct: 66  HPAIVAVYDTGEA-ETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQAL 124

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           +   +  ++H D+KP NI++      KV DFG+AR +    D+ +S++ T   +G+  Y+
Sbjct: 125 NFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAI---ADSGNSVTQTAAVIGTAQYL 181

Query: 816 PPEYGLGERPSTAGDV 831
            PE   G+      DV
Sbjct: 182 SPEQARGDSVDARSDV 197

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.2 bits (241), Expect = 2e-22
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 32/197 (16%)

Query: 660 TGNFSHENLIGSGSFGSVL-----------------HNERTGSWKSFIAECETLRNVRHR 702
              +++ + IG G++G V                    E     +  + E + L   RH 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYL 755
           N++ +     +   + M+ + LV   +    L   +  +  +          I   L Y+
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLM-GADLYKLLKTQHLSNDHICYFLYQILRGLKYI 125

Query: 756 HNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYV 815
           H      V+H DLKP N+LL+     K+ DFGLAR       +         ++ +  Y 
Sbjct: 126 H---SANVLHRDLKPSNLLLNTTCDLKICDFGLARVA---DPDHDHTGFLTEYVATRWYR 179

Query: 816 PPEYGLGERPST-AGDV 831
            PE  L  +  T + D+
Sbjct: 180 APEIMLNSKGYTKSIDI 196

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.1 bits (241), Expect = 3e-22
 Identities = 49/252 (19%), Positives = 81/252 (32%), Gaps = 62/252 (24%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG--------------------SWKSFIAECETLRNV 699
           +FS   +IG G FG V       TG                       +       +   
Sbjct: 5   DFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG 64

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSA 751
               +V +  +  + D      L+ + + ++ G L   +                 I   
Sbjct: 65  DCPFIVCMSYAFHTPDK-----LSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILG 119

Query: 752 LDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
           L+++HN     VV+ DLKP NILLDE    ++ D GLA           S    H  +G+
Sbjct: 120 LEHMHNRF---VVYRDLKPANILLDEHGHVRISDLGLACDF--------SKKKPHASVGT 168

Query: 812 IGYVPPEYGLGERPSTA----------------GDVPTSESFAGEFNIVKWVESNLPENV 855
            GY+ PE         +                G  P  +    + + +  +   +   +
Sbjct: 169 HGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL 228

Query: 856 LQVLDPELRQLM 867
                PELR L+
Sbjct: 229 PDSFSPELRSLL 240

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 96.7 bits (240), Expect = 4e-22
 Identities = 52/284 (18%), Positives = 88/284 (30%), Gaps = 80/284 (28%)

Query: 668 LIGSGSFGSV----------------LHNERTGSWKSFIAECETLRNVRHRNLVKLITSC 711
            +GSG+FG V                ++        +   E   +  + H  L+ L  + 
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95

Query: 712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDYLHNDCEVP 762
                ++   + L+ EFLS G L D I  E                   L ++H   E  
Sbjct: 96  -----EDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMH---EHS 147

Query: 763 VVHSDLKPGNILLD--EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           +VH D+KP NI+ +  +  + K+ DFGLA  L       +      V   +  +  PE  
Sbjct: 148 IVHLDIKPENIMCETKKASSVKIIDFGLATKL-------NPDEIVKVTTATAEFAAPEIV 200

Query: 821 LGERPSTAGDVP----------------TSESFAGEFNIVKWVESNLPENVLQVLDPELR 864
             E      D+                   E        VK  +    E+    + PE +
Sbjct: 201 DREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAK 260

Query: 865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
             +                       +   + P  R+ + +AL 
Sbjct: 261 DFIK----------------------NLLQKEPRKRLTVHDALE 282

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (237), Expect = 8e-22
 Identities = 53/273 (19%), Positives = 95/273 (34%), Gaps = 48/273 (17%)

Query: 666 ENLIGSGSFGSVL--HNERTG---------SWKSFIAECETL-RNVRHRNLVKLITSCSS 713
             ++G G  G VL   N+RT                 E E   R  +  ++V+++    +
Sbjct: 17  SQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYEN 76

Query: 714 LDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDCEVPV 763
           L +   + L +V E L  G L   I                   I  A+ YLH    + +
Sbjct: 77  LYAGR-KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLH---SINI 132

Query: 764 VHSDLKPGNILLDEEM---TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
            H D+KP N+L   +      K+ DFG A+         +S +S      +  YV PE  
Sbjct: 133 AHRDVKPENLLYTSKRPNAILKLTDFGFAKET-------TSHNSLTTPCYTPYYVAPEVL 185

Query: 821 LGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE-----SQTI 875
             E+   + D+    S      I+         N    + P ++  +   +      +  
Sbjct: 186 GPEKYDKSCDM---WSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWS 242

Query: 876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
           ++ + +  +I     +     P  R+ I E + 
Sbjct: 243 EVSEEVKMLI----RNLLKTEPTQRMTITEFMN 271

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 46/299 (15%), Positives = 90/299 (30%), Gaps = 60/299 (20%)

Query: 662 NFSHENLIGSGSFGSVLHNERTGSWKS----------------------FIAECETLRNV 699
             +    +G GSFG V      G  K                       F+ E   ++  
Sbjct: 21  KITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEF 80

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITS--------- 750
              ++V+L+   S       +   ++ E ++ G L  ++   R    +            
Sbjct: 81  NCHHVVRLLGVVS-----QGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKM 135

Query: 751 ------ALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISS 804
                   D +        VH DL   N ++ E+ T K+GDFG+ R +            
Sbjct: 136 IQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI----YETDYYRK 191

Query: 805 THVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVK---WVESNLPENVLQVLDP 861
               +  + ++ PE       +T  DV +      E   +    +   +  + +  V++ 
Sbjct: 192 GGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEG 251

Query: 862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ 920
            L     +      +L              C   +P  R    E +  +K   E   ++
Sbjct: 252 GLLDKPDNCPDMLFEL-----------MRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE 299

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.9 bits (233), Expect = 2e-21
 Identities = 52/271 (19%), Positives = 90/271 (33%), Gaps = 49/271 (18%)

Query: 666 ENLIGSGSFGSVL--HNERTG---------------SWKSFIAECETLRNVRHRNLVKLI 708
            +++G+G+F  V+   ++RT                   S   E   L  ++H N+V L 
Sbjct: 14  RDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALD 73

Query: 709 TSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHNDCE 760
                   ++   L L+ + +S G L D I  +              +  A+ YLH+   
Sbjct: 74  DIY-----ESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGI 128

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           V             LDE+    + DFGL++            S      G+ GYV PE  
Sbjct: 129 VHRDLKPENLLYYSLDEDSKIMISDFGLSKME-------DPGSVLSTACGTPGYVAPEVL 181

Query: 821 LGERPSTAGDVPTSESFAGEFNIVKWVESNLP---ENVLQVLDPELRQLMTSNESQTIQL 877
             +  S A D      ++        +    P   EN  ++ +  L+     +      +
Sbjct: 182 AQKPYSKAVDC-----WSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDI 236

Query: 878 HDCLITIIGSVGLSCTTESPGGRIGIREALR 908
            D     I         + P  R    +AL+
Sbjct: 237 SDSAKDFI----RHLMEKDPEKRFTCEQALQ 263

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (230), Expect = 4e-21
 Identities = 35/190 (18%), Positives = 64/190 (33%), Gaps = 28/190 (14%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGSW-----------------KSFIAECETLRNVRHR 702
           +F     +G+GSFG V    +   G +                 +    E   L  V H 
Sbjct: 5   DFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHP 64

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVP 762
            ++++  +        M    +    L +             +         L       
Sbjct: 65  FIIRMWGTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKD 124

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           +++ DLKP NILLD+    K+ DFG A+++ +          T+   G+  Y+ PE    
Sbjct: 125 IIYRDLKPENILLDKNGHIKITDFGFAKYVPDV---------TYTLCGTPDYIAPEVVST 175

Query: 823 ERPSTAGDVP 832
           +  + + D  
Sbjct: 176 KPYNKSIDWW 185

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.5 bits (226), Expect = 1e-20
 Identities = 47/302 (15%), Positives = 86/302 (28%), Gaps = 73/302 (24%)

Query: 662 NFSHENLIGSGSFGSV-------LHNERTG---------------SWKSFIAECETLRNV 699
                  +G G+FG V       +    T                  ++ ++E + L ++
Sbjct: 14  RLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHI 73

Query: 700 RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------------- 745
            H   V  +    +        L ++ EF   G+L  ++  +R                 
Sbjct: 74  GHHLNVVNLLGACTKPG---GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDF 130

Query: 746 ----------LDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER 795
                       +   +++L        +H DL   NILL E+   K+ DFGLAR +   
Sbjct: 131 LTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDI--- 184

Query: 796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGD-----VPTSESFAGEFNIVKWVESN 850
                           + ++ PE       +   D     V   E F+   +   +    
Sbjct: 185 -YKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP--YPGVK 241

Query: 851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL 910
           + E   + L    R       +  +              L C    P  R    E +  L
Sbjct: 242 IDEEFCRRLKEGTRMRAPDYTTPEMY----------QTMLDCWHGEPSQRPTFSELVEHL 291

Query: 911 KS 912
            +
Sbjct: 292 GN 293

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 2e-20
 Identities = 53/284 (18%), Positives = 89/284 (31%), Gaps = 81/284 (28%)

Query: 668 LIGSGSFGSVL--HNERTG-------------SWKSFIAECETLRNVRHRNLVKLITSCS 712
            +G G FG V       +                     E   L   RHRN++ L  S  
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESF- 70

Query: 713 SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD----------ITSALDYLHNDCEVP 762
               ++ME L +++EF+S   + + I+     EL+          +  AL +LH      
Sbjct: 71  ----ESMEELVMIFEFISGLDIFERIN-TSAFELNEREIVSYVHQVCEALQFLH---SHN 122

Query: 763 VVHSDLKPGNILLD--EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
           + H D++P NI+       T K+ +FG AR L           +  +   +  Y  PE  
Sbjct: 123 IGHFDIRPENIIYQTRRSSTIKIIEFGQARQL-------KPGDNFRLLFTAPEYYAPEVH 175

Query: 821 LGERPSTAGDV----------------PTSESFAGEFNIVKWVESNLPENVLQVLDPELR 864
             +  STA D+                  +E+       +   E    E   + +  E  
Sbjct: 176 QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAM 235

Query: 865 QLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
             +                           +    R+   EAL+
Sbjct: 236 DFVD----------------------RLLVKERKSRMTASEALQ 257

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.2 bits (223), Expect = 3e-20
 Identities = 60/310 (19%), Positives = 105/310 (33%), Gaps = 72/310 (23%)

Query: 663 FSHENL---------IGSGSFGSV----------------------LHNERTGSWKSFIA 691
           F  EN+         +GSG F  V                        + R  S +    
Sbjct: 3   FRQENVDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIER 62

Query: 692 ECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD---- 747
           E   L+ ++H N++ L         +N   + L+ E ++ G L D++  +     +    
Sbjct: 63  EVSILKEIQHPNVITLHEVY-----ENKTDVILILELVAGGELFDFLAEKESLTEEEATE 117

Query: 748 -ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTA----KVGDFGLARFLLERVDNQSSI 802
            +   L+ ++    + + H DLKP NI+L +        K+ DFGLA  +          
Sbjct: 118 FLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI-------DFG 170

Query: 803 SSTHVFMGSIGYVPPEYGLGERPSTAGD-----VPTSESFAGEFNIVKWVESNLPENVLQ 857
           +      G+  +V PE    E      D     V T    +G    +   +     NV  
Sbjct: 171 NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSA 230

Query: 858 VLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR----RLKSS 913
           V + E      SN S      D +             + P  R+ I+++L+    + K +
Sbjct: 231 V-NYEFEDEYFSNTSA--LAKDFI--------RRLLVKDPKKRMTIQDSLQHPWIKPKDT 279

Query: 914 QEILLKQQVP 923
           Q+ L      
Sbjct: 280 QQALSSAWSH 289

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 89.4 bits (221), Expect = 3e-20
 Identities = 41/197 (20%), Positives = 71/197 (36%), Gaps = 49/197 (24%)

Query: 662 NFSHENLIGSGSFGSV-------------------------LHNERTGSWKSFIAECETL 696
           N+  + ++G G    V                            E     ++ + E + L
Sbjct: 4   NYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDIL 63

Query: 697 RNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------- 747
           R V  H N+++L  +      +   F  LV++ +  G L D++  +              
Sbjct: 64  RKVSGHPNIIQLKDTY-----ETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRA 118

Query: 748 ITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHV 807
           +   +  LH   ++ +VH DLKP NILLD++M  K+ DFG +  L               
Sbjct: 119 LLEVICALH---KLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL-------DPGEKLRE 168

Query: 808 FMGSIGYVPPEYGLGER 824
             G+  Y+ PE      
Sbjct: 169 VCGTPSYLAPEIIECSM 185

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 7e-20
 Identities = 61/299 (20%), Positives = 95/299 (31%), Gaps = 58/299 (19%)

Query: 658 RATGNFSHENLIGSGSFGSV-------------------LHNERTGSWKSFIAECETLR- 697
           RA   +     IG G++G V                   +     G   S I E   LR 
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 698 --NVRHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------L 746
                H N+V+L   C+   +     L LV+E +                          
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTH 806
            +   LD+LH+     VVH DLKP NIL+      K+ DFGLAR         S   +  
Sbjct: 124 QLLRGLDFLHSHR---VVHRDLKPQNILVTSSGQIKLADFGLARIY-------SFQMALT 173

Query: 807 VFMGSIGYVPPEYGLGERPSTAGDV-----------------PTSESFAGEFNIVKWVES 849
             + ++ Y  PE  L    +T  D+                   S        I+  +  
Sbjct: 174 SVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGL 233

Query: 850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
              E+  + +    +   + +     +    +  +   + L C T +P  RI    AL 
Sbjct: 234 PGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 292

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 1e-19
 Identities = 47/243 (19%), Positives = 79/243 (32%), Gaps = 45/243 (18%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG-----------------SWKSFIAECETLRNVRHR 702
           +F +  L+G G+FG V+    + TG                      + E   L+N RH 
Sbjct: 6   DFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHP 65

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVP 762
            L  L  +  + D             L      + +  E +        +  L       
Sbjct: 66  FLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRD 125

Query: 763 VVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG 822
           VV+ D+K  N++LD++   K+ DFGL +         S  ++   F G+  Y+ PE    
Sbjct: 126 VVYRDIKLENLMLDKDGHIKITDFGLCKEG------ISDGATMKTFCGTPEYLAPEVLED 179

Query: 823 ERPSTAGDVP----------------TSESFAGEFNIVKWVESNLPENVLQVLDPELRQL 866
                A D                   ++     F ++   E   P      L PE + L
Sbjct: 180 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRT----LSPEAKSL 235

Query: 867 MTS 869
           +  
Sbjct: 236 LAG 238

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (219), Expect = 1e-19
 Identities = 46/198 (23%), Positives = 76/198 (38%), Gaps = 42/198 (21%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG-----------------SWKSFIAECETL-RNVRH 701
           +F    ++G GSFG V     ++T                    +  + E   L     H
Sbjct: 3   DFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEH 62

Query: 702 RNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALD 753
             L  +  +  +      E L  V E+L+ G L   I    K +L         I   L 
Sbjct: 63  PFLTHMFCTFQT-----KENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQ 117

Query: 754 YLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
           +L       +V+ DLK  NILLD++   K+ DFG+ +  +      ++      F G+  
Sbjct: 118 FL---HSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNT------FCGTPD 168

Query: 814 YVPPEYGLGERPSTAGDV 831
           Y+ PE  LG++ + + D 
Sbjct: 169 YIAPEILLGQKYNHSVDW 186

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 1e-19
 Identities = 51/301 (16%), Positives = 98/301 (32%), Gaps = 73/301 (24%)

Query: 662 NFSHENLIGSGSFGSV-----------------------LHNERT-GSWKSFIAECETLR 697
                  +G G+FG V                       L ++ T       I+E E ++
Sbjct: 14  RLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMK 73

Query: 698 NV-RHRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL---------- 746
            + +H+N++ L+ +C+         L ++ E+ S G+L +++   R   L          
Sbjct: 74  MIGKHKNIINLLGACT-----QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNP 128

Query: 747 --------------DITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
                          +   ++YL        +H DL   N+L+ E+   K+ DFGLAR +
Sbjct: 129 EEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 185

Query: 793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV--ESN 850
                +      T      + ++ PE       +   DV +      E   +        
Sbjct: 186 ----HHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV 241

Query: 851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRL 910
             E + ++L    R    SN +  +            +   C    P  R   ++ +  L
Sbjct: 242 PVEELFKLLKEGHRMDKPSNCTNELY----------MMMRDCWHAVPSQRPTFKQLVEDL 291

Query: 911 K 911
            
Sbjct: 292 D 292

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 2e-19
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 36/201 (17%)

Query: 657 RRATGNFSHENLIGSGSFGSVL--HNERTGSW----------KSFIAECETLRNVRHRNL 704
           R    +++   +IG+GSFG V       +G            +    E + +R + H N+
Sbjct: 16  RPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNI 75

Query: 705 VKLITSC-SSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-----------LDITSAL 752
           V+L     SS + K+  +L LV +++         H  R  +             +  +L
Sbjct: 76  VRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL 135

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGS 811
            Y+H      + H D+KP N+LLD +    K+ DFG A+ L+    N S I S +     
Sbjct: 136 AYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRY----- 187

Query: 812 IGYVPPEYGLGERP-STAGDV 831
             Y  PE   G    +++ DV
Sbjct: 188 --YRAPELIFGATDYTSSIDV 206

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 2e-19
 Identities = 38/192 (19%), Positives = 69/192 (35%), Gaps = 38/192 (19%)

Query: 667 NLIGSGSFGSV---------------------LHNERTGSWKSFIAECETLRNVRHRNLV 705
           + +G G F +V                         + G  ++ + E + L+ + H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 706 KLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-----ITSALDYLHNDCE 760
            L+ +       +   ++LV++F+                       +   L  L    +
Sbjct: 64  GLLDAF-----GHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQ 118

Query: 761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYG 820
             ++H DLKP N+LLDE    K+ DFGLA+         S   +    + +  Y  PE  
Sbjct: 119 HWILHRDLKPNNLLLDENGVLKLADFGLAKSF------GSPNRAYTHQVVTRWYRAPELL 172

Query: 821 LGERP-STAGDV 831
            G R      D+
Sbjct: 173 FGARMYGVGVDM 184

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 87.4 bits (215), Expect = 3e-19
 Identities = 54/289 (18%), Positives = 95/289 (32%), Gaps = 45/289 (15%)

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSY 386
                 L L  N+          N  N L  L L  N I    P +   L  L  L LS 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKN-LHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 387 NSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFG 446
           N +          LQ L+V      ++   + N L  +  +        + +G    +F 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQ 147

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKS 506
             + L  I +++  I   IP+G+            ++  + L  N ++     SLK   +
Sbjct: 148 GMKKLSYIRIADTNIT-TIPQGLPP----------SLTELHLDGNKITKVDAASLKGLNN 196

Query: 507 LEELLMAYNQFSGPI-----------------------PNIVAELKGLEVLDLSSNKLSG 543
           L +L +++N  S                          P  +A+ K ++V+ L +N +S 
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 544 ------SIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFR---NMSNVHL 583
                   P       +   ++L  N ++        FR     + V L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.9 bits (206), Expect = 4e-18
 Identities = 55/262 (20%), Positives = 95/262 (36%), Gaps = 12/262 (4%)

Query: 350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA 409
           +   + + L L  N I          L++L  L L  N IS   P     L  L+ L L+
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGI 469
            N++          L++L       NE+T      F     ++ ++L  N +        
Sbjct: 88  KNQLKELPEKMPKTLQELRV---HENEITKVRKSVFNGLNQMIVVELGTNPLK------S 138

Query: 470 LRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELK 529
                     ++ +  I ++D +++  +P  L    SL EL +  N+ +      +  L 
Sbjct: 139 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLN 195

Query: 530 GLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
            L  L LS N +S      L N   LR L+L  N L  V       + +  V+L  N   
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 590 CLQLGCENPRSHGSRLIILSII 611
            +      P  + ++    S +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGV 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 83.5 bits (205), Expect = 5e-18
 Identities = 60/297 (20%), Positives = 98/297 (32%), Gaps = 30/297 (10%)

Query: 168 RSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLV 227
               +L+   N         I  +   D   L+NL  L L  N+++   P     +  L 
Sbjct: 31  PDTALLDLQNN--------KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 228 HLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG 287
            L L+ NQL  E+P  +  TL  L        +    +   L+ +  +++         G
Sbjct: 83  RLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-G 140

Query: 288 TLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPES 347
                   +  L    I    I +                  L  L LDGN+       S
Sbjct: 141 IENGAFQGMKKLSYIRIADTNITTIPQG----------LPPSLTELHLDGNKITKVDAAS 190

Query: 348 IGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLG 407
           +    N L+KL L  N I      S+     L  L L+ N +  ++P  +   + +QV+ 
Sbjct: 191 LKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVY 248

Query: 408 LAGNEIPG------GIPNSLANLKKLNQIDLSGNELT-GEI-PISFGNFQSLLSIDL 456
           L  N I          P         + + L  N +   EI P +F       ++ L
Sbjct: 249 LHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.5 bits (192), Expect = 3e-16
 Identities = 62/338 (18%), Positives = 113/338 (33%), Gaps = 44/338 (13%)

Query: 54  PSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPR 113
           P    C    V C++ G   +  +L                     + LQNNK++     
Sbjct: 5   PFRCQCHLRVVQCSDLGLEKVPKDLPPD---------------TALLDLQNNKITEIKDG 49

Query: 114 EIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVL 173
           +  NL  L  L +  N +    P   + L +L+ L L  N++   + +   + L+ L+V 
Sbjct: 50  DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVH 108

Query: 174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLAS 233
                 +  S+          +      +  L     + +G        M  L ++R+A 
Sbjct: 109 ENEITKVRKSVF---------NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 159

Query: 234 NQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL 293
             +   IP   +   P+L +     N+ T     SL  L N+  + ++ N +       L
Sbjct: 160 TNI-TTIP---QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215

Query: 294 GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFS- 352
            N P LR  ++  NK+V             L +  ++  + L  N               
Sbjct: 216 ANTPHLRELHLNNNKLV--------KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGY 267

Query: 353 ----NELSKLYLGGNHI-YGKIPASIGR-LRSLTLLDL 384
                  S + L  N + Y +I  S  R +     + L
Sbjct: 268 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.5 bits (213), Expect = 4e-19
 Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 34/193 (17%)

Query: 662 NFSHENLIGSGSFGSV-----------------LHNERTGSWKSFIAECETLRNVRHRNL 704
            +     IG G++G V                 L  E  G   + I E   L+ ++H N+
Sbjct: 3   KYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNI 62

Query: 705 VKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-----ITSALDYLHNDC 759
           VKL            + L LV+E L           E   E       +   L+ +    
Sbjct: 63  VKLYDVI-----HTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCH 117

Query: 760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEY 819
           +  V+H DLKP N+L++ E   K+ DFGLAR           +      + ++ Y  P+ 
Sbjct: 118 DRRVLHRDLKPQNLLINREGELKIADFGLARAF------GIPVRKYTHEIVTLWYRAPDV 171

Query: 820 GLGERP-STAGDV 831
            +G +  ST  D+
Sbjct: 172 LMGSKKYSTTIDI 184

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.9 bits (209), Expect = 2e-18
 Identities = 44/286 (15%), Positives = 82/286 (28%), Gaps = 45/286 (15%)

Query: 658 RATGNFSHENLIGSGSFGSVL--HNERTG------------SWKSFIAECETLRNVRHRN 703
           R    +     IGSGSFG +    +   G                   E +  + ++   
Sbjct: 4   RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGV 63

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL--------DITSALDYL 755
            +  I  C +      ++  +V E L       +    RK  L         + S ++Y+
Sbjct: 64  GIPTIRWCGA----EGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYI 119

Query: 756 HNDCEVPVVHSDLKPGNIL---LDEEMTAKVGDFGLARFLLERVDNQSSIS-STHVFMGS 811
           H       +H D+KP N L     +     + DFGLA+   +   +Q           G+
Sbjct: 120 H---SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGT 176

Query: 812 IGYVPPEYGLGERPSTAGD-----VPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL 866
             Y      LG   S   D             G         +   +   ++ + ++   
Sbjct: 177 ARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMS-- 234

Query: 867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKS 912
            T  E           T +      C +     +       +  ++
Sbjct: 235 -TPIEVLCKGYPSEFATYL----NFCRSLRFDDKPDYSYLRQLFRN 275

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 82.9 bits (204), Expect = 8e-18
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 35/199 (17%)

Query: 661 GNFSHENLIGSGSFGSVL--HNERTG------------SWKSFIAECETLRNVRHRNLVK 706
            ++     IG GSFG +    N                       E  T + +     + 
Sbjct: 5   VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIP 64

Query: 707 LITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD--------ITSALDYLHND 758
            +         N+    LV + L            RK  +         + + +  +H  
Sbjct: 65  NVYYFGQEGLHNV----LVIDLLGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIH-- 118

Query: 759 CEVPVVHSDLKPGNILLDEEM-----TAKVGDFGLARFLLERVDNQSSIS-STHVFMGSI 812
            E  +V+ D+KP N L+            V DFG+ +F  + V  Q           G+ 
Sbjct: 119 -EKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA 177

Query: 813 GYVPPEYGLGERPSTAGDV 831
            Y+     LG   S   D+
Sbjct: 178 RYMSINTHLGREQSRRDDL 196

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 5e-17
 Identities = 51/195 (26%), Positives = 72/195 (36%), Gaps = 36/195 (18%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
           NF     IG G++G V                  L  E  G   + I E   L+ + H N
Sbjct: 3   NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN 62

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-------ITSALDYLH 756
           +VKL+             L LV+EFL +  L  ++       +        +   L  L 
Sbjct: 63  IVKLLDVI-----HTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQLLQGLA 116

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 V+H DLKP N+L++ E   K+ DFGLAR     V        TH  +      P
Sbjct: 117 FCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTY-----THEVVTLWYRAP 171

Query: 817 PEYGLGERPSTAGDV 831
                 +  STA D+
Sbjct: 172 EILLGCKYYSTAVDI 186

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 79.1 bits (194), Expect = 2e-16
 Identities = 40/201 (19%), Positives = 73/201 (36%), Gaps = 34/201 (16%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG-----------SWKSFIAECETLRNVR-HRNLVKL 707
           ++     +G G +  V    N                 K    E + L N+R   N++ L
Sbjct: 36  DYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITL 95

Query: 708 ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNEL-----DITSALDYLHNDCEVP 762
                   S+     ALV+E ++N             ++     +I  ALDY H+     
Sbjct: 96  ADIVKDPVSRT---PALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMG--- 149

Query: 763 VVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGL 821
           ++H D+KP N+++D E    ++ D+GLA F              +V + S  +  PE  +
Sbjct: 150 IMHRDVKPHNVMIDHEHRKLRLIDWGLAEFY-------HPGQEYNVRVASRYFKGPELLV 202

Query: 822 GERP-STAGDVPTSESFAGEF 841
             +    + D+ +        
Sbjct: 203 DYQMYDYSLDMWSLGCMLASM 223

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-16
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 21/289 (7%)

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
             C  +    +P  +      Q I +  N +             L    +  N +     
Sbjct: 16  TSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI-- 71

Query: 315 DEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG 374
                   + T    L  L L  N     +  +  +    L  L+L    +    P    
Sbjct: 72  -----DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG 434
            L +L  L L  N++          L  L  L L GN I      +   L  L+++ L  
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           N +    P +F +   L+++ L  N +             E ++ L  +  + L+DN   
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNL--------SALPTEALAPLRALQYLRLNDNPWV 238

Query: 495 GNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSG 543
            +   +      L++   + ++    +P     L G ++  L++N L G
Sbjct: 239 CD-CRARPLWAWLQKFRGSSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 5e-16
 Identities = 63/334 (18%), Positives = 100/334 (29%), Gaps = 51/334 (15%)

Query: 58  PCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGN 117
           PC  PG  C  +    +  +    GL+  +   I      + I L  N++S         
Sbjct: 1   PC--PGA-CVCYNEPKVTTSCPQQGLQ-AVPVGIPAA--SQRIFLHGNRISHVPAASFRA 54

Query: 118 LFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGK 177
              L +L +  N L        + L  L+ LDL  N     V       L  L  L+  +
Sbjct: 55  CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 178 NLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG 237
             L          L P     L  L+ L L  N L      T  ++ +L HL L  N++ 
Sbjct: 115 CGLQ--------ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLP 297
             +P      L +L   +   NR     P +  +L  +  + +  N              
Sbjct: 167 S-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-------------- 211

Query: 298 FLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSK 357
                            +       +L     L YL L+ N +              L K
Sbjct: 212 -----------------NLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQK 252

Query: 358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISG 391
                + +   +P     L    L  L+ N + G
Sbjct: 253 FRGSSSEVPCSLPQR---LAGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 3e-12
 Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 17/264 (6%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
           +P  I        +++L GN I     AS    R+LT+L L  N ++         L  L
Sbjct: 26  VPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 404 QVLGLAGNEIPGGI-PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
           + L L+ N     + P +   L +L+ + L    L    P  F    +L  + L +N + 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
                       +    L N+  + L  N +S     + +   SL+ LL+  N+ +   P
Sbjct: 143 ALPD--------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194

Query: 523 NIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVH 582
           +   +L  L  L L +N LS      L  L+AL+ L L  N       +  ++  +    
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254

Query: 583 LKGNPKLCLQLGCENPRSHGSRLI 606
              +     ++ C  P+    R +
Sbjct: 255 GSSS-----EVPCSLPQRLAGRDL 273

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 48/237 (20%), Positives = 71/237 (29%), Gaps = 14/237 (5%)

Query: 51  YWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGN 110
            W  S+                       +  L          L  L ++ L    L   
Sbjct: 61  LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL 120

Query: 111 LPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSL 170
            P     L  L+ L +  N LQ         L  L  L L  N+I+  V +   R L SL
Sbjct: 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSL 179

Query: 171 QVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLR 230
             L   +N +          + P     L  L  L L  N L+      +  + +L +LR
Sbjct: 180 DRLLLHQNRVAH--------VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231

Query: 231 LASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEG 287
           L  N    +     R     L  F    +     +P  L       + R+  N L+G
Sbjct: 232 LNDNPWVCDC--RARPLWAWLQKFRGSSSEVPCSLPQRLAGR---DLKRLAANDLQG 283

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 3e-16
 Identities = 36/184 (19%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 662 NFSHENLIGSGSFGSV------------------LHNERTGSWKSFIAECETLRNVRHRN 703
            +     IG G++G+V                  L ++  G   S + E   L+ ++H+N
Sbjct: 3   KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN 62

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELDITSALDYLHNDCEVPV 763
           +V+L     S     + F     +        +        +  +   L  L       V
Sbjct: 63  IVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNV 122

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
           +H DLKP N+L++     K+ +FGLAR           +      + ++ Y PP+   G 
Sbjct: 123 LHRDLKPQNLLINRNGELKLANFGLARAF------GIPVRCYSAEVVTLWYRPPDVLFGA 176

Query: 824 RPST 827
           +  +
Sbjct: 177 KLYS 180

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.8 bits (188), Expect = 2e-15
 Identities = 49/255 (19%), Positives = 92/255 (36%), Gaps = 60/255 (23%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTGS-----------------WKSFIAECETLRNVRHR 702
            F     +G+GSFG V+   ++ +G+                  +  + E   L+ V   
Sbjct: 42  QFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFP 101

Query: 703 NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE--------LDITSALDY 754
            LVKL  S      K+   L +V E+++ G +   +    +            I    +Y
Sbjct: 102 FLVKLEFSF-----KDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEY 156

Query: 755 LHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGY 814
           LH    + +++ DLKP N+L+D++   +V DFG A+              T    G+   
Sbjct: 157 LH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKR---------VKGRTWTLCGTPEA 204

Query: 815 VPPEYGLGERPSTAGDVP----------------TSESFAGEFNIVKWVESNLPENVLQV 858
           + PE  L +  + A D                   ++     +  +   +   P +    
Sbjct: 205 LAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSD 264

Query: 859 LDPELRQLMTSNESQ 873
           L   LR L+  + ++
Sbjct: 265 LKDLLRNLLQVDLTK 279

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 3e-15
 Identities = 42/229 (18%), Positives = 77/229 (33%), Gaps = 39/229 (17%)

Query: 668 LIGSGSFGSVL--HNERTG----------------SWKSFIAECETLRNVRHRNLVKLIT 709
            IGSG+ G V   ++                      K    E   ++ V H+N++ L+ 
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 710 SCSSLDS-KNMEFLALVYEFLSNGSLGDWIHGERKNEL-----DITSALDYLHNDCEVPV 763
             +   + +  + + LV E +                +      +   + +LH+     +
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAG---I 140

Query: 764 VHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE 823
           +H DLKP NI++  + T K+ DFGLAR          +      ++ +  Y  PE  LG 
Sbjct: 141 IHRDLKPSNIVVKSDCTLKILDFGLART-------AGTSFMMTPYVVTRYYRAPEVILGM 193

Query: 824 RPSTAGD-----VPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLM 867
                 D         E    +         +    V++ L     + M
Sbjct: 194 GYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFM 242

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 1e-14
 Identities = 38/195 (19%), Positives = 71/195 (36%), Gaps = 36/195 (18%)

Query: 662 NFSHENLIGSGSFGSVL--HNERTG----------------SWKSFIAECETLRNVRHRN 703
            + + + +GSG++GSV    + +TG                  K    E   L++++H N
Sbjct: 19  RYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN 78

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLH 756
           ++ L+   +   S        +   L    L + +  ++  +         I   L Y+H
Sbjct: 79  VIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIH 138

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
           +     ++H DLKP N+ ++E+   K+ DFGLAR              T          P
Sbjct: 139 SAD---IIHRDLKPSNLAVNEDCELKILDFGLARHT--------DDEMTGYVATRWYRAP 187

Query: 817 PEYGLGERPSTAGDV 831
                    +   D+
Sbjct: 188 EIMLNWMHYNQTVDI 202

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 1e-14
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 39/191 (20%)

Query: 663 FSHENLIGSGSFGSVL--HNERTG----------------SWKSFIAECETLRNVRHRNL 704
           +     +GSG++G+V    + RTG                  K    E   L+++RH N+
Sbjct: 20  YRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENV 79

Query: 705 VKLITSCSSLDSKNMEF-LALVYEFLSNGSLGDWIHGERKNE-------LDITSALDYLH 756
           + L+   +  ++ +      LV  F+     G  +  E+  E         +   L Y+H
Sbjct: 80  IGLLDVFTPDETLDDFTDFYLVMPFMGTDL-GKLMKHEKLGEDRIQFLVYQMLKGLRYIH 138

Query: 757 NDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVP 816
                 ++H DLKPGN+ ++E+   K+ DFGLAR            S    ++ +  Y  
Sbjct: 139 ---AAGIIHRDLKPGNLAVNEDCELKILDFGLARQA---------DSEMTGYVVTRWYRA 186

Query: 817 PEYGLGERPST 827
           PE  L     T
Sbjct: 187 PEVILNWMRYT 197

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 51/287 (17%), Positives = 80/287 (27%), Gaps = 89/287 (31%)

Query: 668 LIGSGSFGSV----------------LHNERTGSW------KSFIAECETLRNVR--HRN 703
           L+GSG FGSV                +  +R   W           E   L+ V      
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 704 LVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------LDITSALDY 754
           +++L+      DS       L+ E             ER              +  A+ +
Sbjct: 71  VIRLLDWFERPDS-----FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRH 125

Query: 755 LHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIG 813
                   V+H D+K  NIL+D      K+ DFG    L +        +    F G+  
Sbjct: 126 C---HNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD--------TVYTDFDGTRV 174

Query: 814 YVPPEYGLGER-PSTAGDVP----------TSES-FAGEFNIVKWVESNLPENVLQVLDP 861
           Y PPE+    R    +  V             +  F  +  I++  +    + V      
Sbjct: 175 YSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG-QVFFRQRV----SS 229

Query: 862 ELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR 908
           E + L+                        C    P  R    E   
Sbjct: 230 ECQHLIR----------------------WCLALRPSDRPTFEEIQN 254

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (173), Expect = 9e-14
 Identities = 37/192 (19%), Positives = 77/192 (40%), Gaps = 39/192 (20%)

Query: 662 NFSHENLIGSGSFGSV-----LHNERTG------------------SWKSFIAECETLRN 698
           NF    ++G+G++G V     +    TG                  + +    E + L +
Sbjct: 25  NFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 84

Query: 699 VRHR-NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHG-----ERKNELDITSAL 752
           +R    LV L  +      +    L L+ ++++ G L   +       E + ++ +   +
Sbjct: 85  IRQSPFLVTLHYAF-----QTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIV 139

Query: 753 DYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSI 812
             L +  ++ +++ D+K  NILLD      + DFGL++  +     +      + F G+I
Sbjct: 140 LALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETER-----AYDFCGTI 194

Query: 813 GYVPPEYGLGER 824
            Y+ P+   G  
Sbjct: 195 EYMAPDIVRGGD 206

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.5 bits (153), Expect = 4e-11
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 41/207 (19%)

Query: 661 GNFSHENLIGSGSFGSVL--HNERTG-------------SWKSFIAECETLRNVRHRNLV 705
             +     +G G F +V    +                   ++   E + L+ V   +  
Sbjct: 13  ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNT 72

Query: 706 KLITSCS----------SLDSKNMEFLALVYEFLSNGSLGDWIHGERKNE---------L 746
           K  +  +          +    N   + +V+E L    L      E +            
Sbjct: 73  KEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISK 132

Query: 747 DITSALDYLHNDCEVPVVHSDLKPGNILLDEE-MTAKVGDFGLARFLLERVDNQSSISST 805
            +   LDY+H  C   ++H+D+KP N+L++       +    +A                
Sbjct: 133 QLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENLIQIKIADLGNAC----WYDEHY 186

Query: 806 HVFMGSIGYVPPEYGLGERPSTAGDVP 832
              + +  Y  PE  LG       D+ 
Sbjct: 187 TNSIQTREYRSPEVLLGAPWGCGADIW 213

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 43/211 (20%), Positives = 73/211 (34%), Gaps = 22/211 (10%)

Query: 396 EIGQLQGLQVLGLAGN---EIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLL 452
           E+ ++     +         +P  +P     L       LS N L      +   +  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTIL------HLSENLLYTFSLATLMPYTRLT 58

Query: 453 SIDLSNNRINGNIPKGILRPLPE-------------EISRLENVVTIDLSDNSLSGNLPN 499
            ++L    +      G L  L                   L  +  +D+S N L+     
Sbjct: 59  QLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 500 SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLN 559
           +L+    L+EL +  N+     P ++     LE L L++N L+      L  L+ L +L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 560 LTFNNLEGVVPSEGIFRNMSNVHLKGNPKLC 590
           L  N+L  +         +    L GNP LC
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 1e-09
 Identities = 39/197 (19%), Positives = 63/197 (31%), Gaps = 14/197 (7%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
           +P  + +    T+L LS N +       +     L  L L   E+     +    L  L 
Sbjct: 25  LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLG 80

Query: 429 QIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL 488
            +DLS N+L     +                 +       +       +  L  +  + L
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPA---------LTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSD 548
             N L    P  L     LE+L +A N  +     ++  L+ L+ L L  N L  +IP  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 549 LQNLQALRSLNLTFNNL 565
                 L    L  N  
Sbjct: 191 FFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (134), Expect = 4e-09
 Identities = 41/218 (18%), Positives = 71/218 (32%), Gaps = 17/218 (7%)

Query: 90  HIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLD 149
            +  ++    +      L+  LP ++       +L++S N L       +   T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 150 LMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTI 209
           L   ++T    D  L  L +L + +     L        A  +               + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDV------------SF 109

Query: 210 NRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSL 269
           NRL       +  +  L  L L  N+    +P  +    P L       N  T    G L
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 270 HNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFN 307
           + L N+  + +  N L  T+P G      L    +  N
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 42/227 (18%), Positives = 67/227 (29%), Gaps = 24/227 (10%)

Query: 114 EIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVL 173
           E+  +     +N    NL   LP ++ K  +  +L L  N +    +   L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQL 60

Query: 174 NFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLAS 233
           N  +  L                  L  L  LDL+ N+L              V     +
Sbjct: 61  NLDRAELTKLQVDG----------TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110

Query: 234 NQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL 293
                 +P      L  L +     N      PG L     ++ + + +N L       L
Sbjct: 111 RLTS--LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 294 GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQF 340
             L  L T  +  N + +               S  L +  L GN +
Sbjct: 169 NGLENLDTLLLQENSLYT--------IPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 39/220 (17%), Positives = 60/220 (27%), Gaps = 39/220 (17%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           +P DL +  +  +L L+ N L     +T+   T L  L L   +        V  TLP L
Sbjct: 25  LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE---LTKLQVDGTLPVL 79

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
                  N+                +    + L                           
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS------------------------- 114

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
                    + +L     L  L L GN+ +   P  +              N++      
Sbjct: 115 -------LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL-ANNNLTELPAG 166

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGN 411
            +  L +L  L L  NS+   IP        L    L GN
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 3e-06
 Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 15/198 (7%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
           +P  +     + + L+L  N +Y    A++     LT L+L    +        G L  L
Sbjct: 25  LPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVL 79

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
             L L+ N++          L  L  +D+S N LT     +      L  + L  N    
Sbjct: 80  GTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE--- 135

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPN 523
                +    P  ++    +  + L++N+L+      L   ++L+ LL+  N     IP 
Sbjct: 136 -----LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK 189

Query: 524 IVAELKGLEVLDLSSNKL 541
                  L    L  N  
Sbjct: 190 GFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 7e-06
 Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 18/258 (6%)

Query: 255 IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGD 314
           + C  R    +P  L    +  I+ ++ NLL       L     L   N+   ++     
Sbjct: 15  VNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 315 DEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG 374
           D  L  + +L  S +         Q    +     +F           N +      ++ 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF-----------NRLTSLPLGALR 121

Query: 375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG 434
            L  L  L L  N +    P  +     L+ L LA N +       L  L+ L+ + L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLS 494
           N L   IP  F     L    L  N    N     +      +      V +      + 
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE---ILYFRRWLQDNAENVYVWKQGVDVK 237

Query: 495 GNLPN-SLKNCKSLEELL 511
               N +   C + ++  
Sbjct: 238 AMTSNVASVQCDNSDKFP 255

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 31/211 (14%), Positives = 52/211 (24%), Gaps = 41/211 (19%)

Query: 62  PGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRL 121
           P    +   + +  +N     L   + P +        + L  N L       +    RL
Sbjct: 2   PICEVSKVASHLE-VNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRL 57

Query: 122 RVLNISFNNLQGELPVNISKLTELKM---------------------------------- 147
             LN+    L          +                                       
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 148 --LDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVL 205
             L  +       +  ++L+ L    +    K         ++  L    L+ LENL  L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 206 DLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
            L  N L  T+P   +    L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 61.4 bits (147), Expect = 2e-10
 Identities = 58/331 (17%), Positives = 108/331 (32%), Gaps = 21/331 (6%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLL 180
              L ++   L   LP     L  L       N +T     +     +SL+ L    N L
Sbjct: 40  AHELELNNLGLS-SLPELPPHLESL---VASCNSLT-----ELPELPQSLKSLLVDNNNL 90

Query: 181 WGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEI 240
             ++      L    +S  +  K     +   +      + N +      L  +      
Sbjct: 91  K-ALSDLPPLLEYLGVSNNQLEK--LPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147

Query: 241 PYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLR 300
             +  + LP L +  +    +             + +  +          P L NLPFL 
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207

Query: 301 TYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYL 360
           T     N + +  D        ++ ++   +   L  +     + E+I +  +EL     
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267

Query: 361 GGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNS 420
             N    +I +      SL  L++S N +  E+P    +   L+ L  + N +   +P  
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL-AEVPEL 322

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSL 451
             NLK+L    +  N L  E P    + + L
Sbjct: 323 PQNLKQL---HVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 27/342 (7%)

Query: 66  CNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLN 125
           C +       L L++ GL  ++     +L    S+    N L+  LP    +L   + L 
Sbjct: 35  CLDRQAHE--LELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSL---KSLL 84

Query: 126 ISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIP 185
           +  NNL+      +S L  L     ++N    ++ + Q  +   +  ++         +P
Sbjct: 85  VDNNNLK-----ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139

Query: 186 PSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVR 245
           PS+  +   +    E  ++ +L          +++  +  L     +       +     
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199

Query: 246 DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG 305
                 L  IY  N     +P    +L  + +       L                ++  
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259

Query: 306 FNKIV--SSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGN 363
                     +       +       L  L +  N+   ++P         L +L    N
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFN 314

Query: 364 HIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQV 405
           H+  ++P     L+    L + YN +  E P     ++ L++
Sbjct: 315 HL-AEVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 480 LENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN 539
             ++  +++S+N L   LP        LE L+ ++N  +     +    + L+ L +  N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA----EVPELPQNLKQLHVEYN 334

Query: 540 KLSGSIPSDLQNLQALR 556
            L    P   ++++ LR
Sbjct: 335 PLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 1e-06
 Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS 547
              N+ S  + +      SLEEL ++ N+       + A    LE L  S N L+  +P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI----ELPALPPRLERLIASFNHLA-EVPE 321

Query: 548 DLQNLQALRSLNLTFNNLEGV 568
             QNL   + L++ +N L   
Sbjct: 322 LPQNL---KQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 8e-06
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 17/102 (16%)

Query: 432 LSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDN 491
              N  + EI        SL  +++SNN++           LP    RLE    +  S N
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE---------LPALPPRLE---RLIASFN 314

Query: 492 SLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEV 533
            L+  +P   +N   L++L + YN      P+I   ++ L +
Sbjct: 315 HLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 514 YNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEG 573
            N  S  I ++      LE L++S+NKL   +P+    L+    L  +FN+L  V     
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEV---PE 321

Query: 574 IFRNMSNVHLKGNP 587
           + +N+  +H++ NP
Sbjct: 322 LPQNLKQLHVEYNP 335

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 58.3 bits (140), Expect = 4e-10
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 35/154 (22%)

Query: 667 NLIGSGSFGSV-------------------------LHNERTGSWKSFIAECETLRNVRH 701
            L+G G   +V                         +  +R      F            
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 702 RNLVKL--ITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKNELD-ITSALDYLHND 758
           R L KL  +        +     A++ E +    L           LD I   +   ++ 
Sbjct: 66  RALQKLQGLAVPKVYAWEGN---AVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR 122

Query: 759 CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL 792
               +VH DL   N+L+  E    + DF  +  +
Sbjct: 123 G---IVHGDLSQYNVLVS-EEGIWIIDFPQSVEV 152

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 40/258 (15%), Positives = 87/258 (33%), Gaps = 8/258 (3%)

Query: 333 LALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE 392
           L L G      +   +   S  +       + +   +       R +  +DLS + I   
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEVS 61

Query: 393 -IPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSL 451
            +   + Q   LQ L L G  +   I N+LA    L +++LSG     E  +        
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 452 LSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELL 511
              +L+ +       K +   +      +  +       N    +L   ++ C +L  L 
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 512 MAYN-QFSGPIPNIVAELKGLEVLDLSS-NKLSGSIPSDLQNLQALRSLNLTFNNLEGVV 569
           ++ +            +L  L+ L LS    +      +L  +  L++L +     +G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 570 PSEGIFRNMSNVHLKGNP 587
               +   + ++ +  + 
Sbjct: 242 QL--LKEALPHLQINCSH 257

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 40/295 (13%), Positives = 80/295 (27%), Gaps = 33/295 (11%)

Query: 180 LWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPS-TIYNMTSLVHLRLASNQLGG 238
           LW ++  +  NL P    RL +  V+     R     P    ++   + H+ L+++ +  
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEV 60

Query: 239 EIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPF 298
              + +      L +      R +  I  +L   +N+  + ++                 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC--------------- 105

Query: 299 LRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL 358
                   +          LS  + L                +  +       +      
Sbjct: 106 --------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157

Query: 359 YLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAG-NEIPGGI 417
           Y                   + L       +  +   E  QL  LQ L L+   +I    
Sbjct: 158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET 217

Query: 418 PNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRP 472
              L  +  L  + + G    G + +       L        +IN +    I RP
Sbjct: 218 LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL--------QINCSHFTTIARP 264

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 9/114 (7%)

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
           Q L L G  +   +   L +   +       + +   +   F  F+ +  +DLSN+ I  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQGVIA-FRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQF 517
           +        L   +S+   +  + L    LS  + N+L    +L  L ++    
Sbjct: 61  S-------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 6e-04
 Identities = 29/233 (12%), Positives = 78/233 (33%), Gaps = 5/233 (2%)

Query: 321 ITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLT 380
           +    +   + ++ L  +  E      I +  ++L  L L G  +   I  ++ +  +L 
Sbjct: 39  LAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV 98

Query: 381 LLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTG- 439
            L+LS  S   E  ++       ++  L  +         +          ++   L+G 
Sbjct: 99  RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 158

Query: 440 EIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD-NSLSGNLP 498
              +   +  +L+    +   ++ +    +     +E  +L  +  + LS    +     
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218

Query: 499 NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQN 551
             L    +L+ L +      G +  +    + L  L ++ +  +      + N
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLL---KEALPHLQINCSHFTTIARPTIGN 268

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (129), Expect = 3e-08
 Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 378 SLTLLDLSYNSISGEIPIEI-GQLQGLQVLGLAGNEI----PGGIPNSLANLKKLNQIDL 432
            +  LD+    +S     E+   LQ  QV+ L    +       I ++L     L +++L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 433 SGNELTGEIPISFG-----NFQSLLSIDLSNN 459
             NEL                  +  + L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (125), Expect = 1e-07
 Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 5/91 (5%)

Query: 482 NVVTIDLSDNSLSGN-LPNSLKNCKSLEELLMAYNQFSG----PIPNIVAELKGLEVLDL 536
           ++ ++D+    LS       L   +  + + +     +      I + +     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 537 SSNKLSGSIPSDLQNLQALRSLNLTFNNLEG 567
            SN+L       +       S  +   +L+ 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 2e-07
 Identities = 18/92 (19%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 346 ESIGNFSNELSKLYLGGNHIYGK----IPASIGRLRSLTLLDLSYNSISGEIPIEIGQ-- 399
           + +G   + L  L+L    +       + A++    SL  LDLS N +     +++ +  
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 400 ---LQGLQVLGLAGNEIPGGIPNSLANLKKLN 428
                 L+ L L        + + L  L+K  
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 2e-07
 Identities = 18/96 (18%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 423 NLKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEIS 478
               L  + L+  +++      +  +     SL  +DLSNN +       ++  + +   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 479 RLENVVTIDLSDNSLSGNLPNSL----KNCKSLEEL 510
            LE    + L D   S  + + L    K+  SL  +
Sbjct: 427 LLE---QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (117), Expect = 1e-06
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 403 LQVLGLAGNEI-PGGIPNSLANLKKLNQIDLSGNELTGE----IPISFGNFQSLLSIDLS 457
           +Q L +   E+        L  L++   + L    LT      I  +     +L  ++L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 458 NNRINGNIPKGILRPLPEEISRLEN 482
           +N +       +L+ L     +++ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQK 88

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 2e-06
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 9/78 (11%)

Query: 485 TIDLSDNSLSGN----LPNSLKNCKSLEELLMAYNQFSGPIPNIVAE-----LKGLEVLD 535
            + L+D  +S +    L  +L    SL EL ++ N         + E        LE L 
Sbjct: 373 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 432

Query: 536 LSSNKLSGSIPSDLQNLQ 553
           L     S  +   LQ L+
Sbjct: 433 LYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 144 ELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLK 203
           +++ LD+   +++     + L  L+  QV+          +  +    I S L     L 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC----GLTEARCKDISSALRVNPALA 58

Query: 204 VLDLTINRLAGTVPSTI-----YNMTSLVHLRLASNQ 235
            L+L  N L       +          +  L L +  
Sbjct: 59  ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-06
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 403 LQVLGLAGNEI----PGGIPNSLANLKKLNQIDLSGNELTGEIPISFG-----NFQSLLS 453
           L+VL LA  ++       +  +L     L ++DLS N L     +            L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 454 IDLSNNRINGNIPKGI 469
           + L +   +  +   +
Sbjct: 431 LVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 10/101 (9%), Positives = 30/101 (29%), Gaps = 13/101 (12%)

Query: 423 NLKKLNQIDLSGNELTGE-IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLE 481
           +++ L   D+   EL+           Q    + L +  +         + +   +    
Sbjct: 3   DIQSL---DIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR----CKDISSALRVNP 55

Query: 482 NVVTIDLSDNSLSGNLPNSL-----KNCKSLEELLMAYNQF 517
            +  ++L  N L     + +          +++L +     
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 8e-06
 Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 445 FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN----LPNS 500
                 L  + L++  ++ +        L   +    ++  +DLS+N L       L  S
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCS----SLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 501 LK-NCKSLEELLMAYNQFSGPIPNIVAELK 529
           ++     LE+L++    +S  + + +  L+
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 9/81 (11%)

Query: 501 LKNCKSLEELLMAYNQFSG----PIPNIVAELKGLEVLDLSSNKLSGSIPSDL-----QN 551
            +    L  L +A    S      +   +     L  LDLS+N L  +    L     Q 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 552 LQALRSLNLTFNNLEGVVPSE 572
              L  L L        +   
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 12/161 (7%)

Query: 25  GINTDKEALMSFKSQISQESPSSPLSYWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLE 84
           G     E L+    Q+      S        S   +           ++    L   G+ 
Sbjct: 299 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 358

Query: 85  GTISPHIGNLSFLRSIQLQNNKLSGN----LPREIGNLFRLRVLNISFNNLQGELPVNIS 140
                     S LR + L +  +S +    L   +     LR L++S N L     + + 
Sbjct: 359 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 141 K-----LTELKMLDLMANKITGRVTD---DQLRNLRSLQVL 173
           +        L+ L L     +  + D      ++  SL+V+
Sbjct: 419 ESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 5e-05
 Identities = 9/78 (11%), Positives = 23/78 (29%), Gaps = 4/78 (5%)

Query: 327 STHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK----IPASIGRLRSLTLL 382
           S  +  L +   +        +     +   + L    +       I +++    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 383 DLSYNSISGEIPIEIGQL 400
           +L  N +       + Q 
Sbjct: 61  NLRSNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 1e-04
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 9/88 (10%)

Query: 97  LRSIQLQNNKLSGN-LPREIGNLFRLRVLNISFNNLQGE----LPVNISKLTELKMLDLM 151
           ++S+ +Q  +LS       +  L + +V+ +    L       +   +     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 152 ANKITGR----VTDDQLRNLRSLQVLNF 175
           +N++       V          +Q L+ 
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 266 PGSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFI 321
            G     + ++++ +    +  +    L   L     LR  ++  N +     D G+  +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL----GDAGILQL 417

Query: 322 TSL--TNSTHLNYLALDGNQFEGKIPESIGNFSNELSKL 358
                     L  L L    +  ++ + +     +   L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 5e-04
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 76  LNLSSFGLEGTISPHI-GNLSFLRSIQLQNNKLSGNLPREIGNLFR----LRVLNISFNN 130
           L++    L       +   L   + ++L +  L+    ++I +  R    L  LN+  N 
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 131 LQGELPVNISKL-----TELKMLDLM 151
           L       + +       +++ L L 
Sbjct: 67  LGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRL----AGTVPSTIYNMT 224
            +Q L+     L  +    +       L  L+  +V+ L    L       + S +    
Sbjct: 3   DIQSLDIQCEELSDARWAEL-------LPLLQQCQVVRLDDCGLTEARCKDISSALRVNP 55

Query: 225 SLVHLRLASNQLGGEIPYDVRDTLPN 250
           +L  L L SN+LG    + V   L  
Sbjct: 56  ALAELNLRSNELGDVGVHCVLQGLQT 81

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.003
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 145 LKMLDLMANKITGRVTD---DQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLEN 201
           L++L L    ++          L    SL+ L+   N L  +    +   +         
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC---L 427

Query: 202 LKVLDLTINRLAGTVPSTI 220
           L+ L L     +  +   +
Sbjct: 428 LEQLVLYDIYWSEEMEDRL 446

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 6e-08
 Identities = 32/205 (15%), Positives = 75/205 (36%), Gaps = 20/205 (9%)

Query: 369 IPASIGR------LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLA 422
           +P  I +             +L   S++  +     +L  +  +    ++I       + 
Sbjct: 10  VPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQ 65

Query: 423 NLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPE------- 475
            L  + ++ L+GN+LT   P++       L +D +  +   ++                 
Sbjct: 66  YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS 125

Query: 476 EISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLD 535
           +I+ L ++  ++      +     ++ +  +  + L   +     I  + A L  L+ L 
Sbjct: 126 DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLY 184

Query: 536 LSSNKLSGSIPSDLQNLQALRSLNL 560
           LS N +S  + + L  L+ L  L L
Sbjct: 185 LSKNHIS-DLRA-LAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 37/197 (18%), Positives = 63/197 (31%), Gaps = 16/197 (8%)

Query: 246 DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG 305
           D     +         T  +  + + L +I  I   ++ ++     G+  LP +    + 
Sbjct: 21  DAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLN 76

Query: 306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPES--------IGNFSNELSK 357
            NK+        L  +  L    +           +     S        I    +    
Sbjct: 77  GNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQL 136

Query: 358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGI 417
             L   +        + RL  L  L L  N IS  +P+    L  LQ L L+ N I    
Sbjct: 137 ESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSKNHISD-- 192

Query: 418 PNSLANLKKLNQIDLSG 434
             +LA LK L+ ++L  
Sbjct: 193 LRALAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 7e-04
 Identities = 33/208 (15%), Positives = 59/208 (28%), Gaps = 19/208 (9%)

Query: 215 TVPSTI------YNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGS 268
           TVP+ I            +   L    +   +    ++ L ++   I   +         
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQG-- 63

Query: 269 LHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNST 328
           +  L N+  + +  N L    P            +    K +SS  D       SL ++ 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

Query: 329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKI------PASIGRLRSLTLL 382
             +   L        +       ++      L                  +  L  L  L
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNL 183

Query: 383 DLSYNSISGEIPIEIGQLQGLQVLGLAG 410
            LS N IS ++   +  L+ L VL L  
Sbjct: 184 YLSKNHIS-DLR-ALAGLKNLDVLELFS 209

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 52.6 bits (124), Expect = 9e-08
 Identities = 44/327 (13%), Positives = 93/327 (28%), Gaps = 25/327 (7%)

Query: 145 LKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKV 204
           LK+  +             L    S++ +    N    +I    A  +  +++  ++L++
Sbjct: 10  LKLDAITTEDEKSVF--AVLLEDDSVKEIVLSGN----TIGTEAARWLSENIASKKDLEI 63

Query: 205 LDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG--GEIPYDVRDTLPNLLDFIYCFNRFT 262
            + +              +  L+   L   +L            T    L      +   
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 263 GKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFIT 322
             +    + L      ++   L E  +     N P LR+   G N++ +    E      
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183

Query: 323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNEL-----SKLYLGGNHIYGKIPASIGRLR 377
           S      +  +         +     G    +       +     +     +  ++    
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243

Query: 378 SLTLLDLSYNSISGEIPIEIGQ------LQGLQVLGLAGNEIPGGIPNSLA-----NLKK 426
           +L  L L+   +S      +          GLQ L L  NEI      +L       +  
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303

Query: 427 LNQIDLSGNELTGEIPISFGNFQSLLS 453
           L  ++L+GN    E        + + S
Sbjct: 304 LLFLELNGNRF-SEEDDVVDEIREVFS 329

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 39/323 (12%), Positives = 83/323 (25%), Gaps = 21/323 (6%)

Query: 121 LRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTD---DQLRNLRSLQVLNFGK 177
           L++  I+  + +  +   + +   +K + L  N I         + + + + L++  F  
Sbjct: 10  LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 178 NLLW--GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ 235
                     P    L+   L +   L  + L+ N    T    + +  S  H  L    
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLY 127

Query: 236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGN 295
           L                      N+     P     +     +                 
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187

Query: 296 LPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNEL 355
           L  ++    G               +        L+                       L
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLL--EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 245

Query: 356 SKLYLGGNHIYGKIPASIGR------LRSLTLLDLSYNSISGEIPIEI-----GQLQGLQ 404
            +L L    +  +  A++           L  L L YN I  +    +      ++  L 
Sbjct: 246 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 305

Query: 405 VLGLAGNEIPGGIPNSLANLKKL 427
            L L GN       + +  ++++
Sbjct: 306 FLELNGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 45.3 bits (105), Expect = 2e-05
 Identities = 41/327 (12%), Positives = 97/327 (29%), Gaps = 24/327 (7%)

Query: 97  LRSIQLQNNKLSGN----LPREIGNLFRLRVLNISFNNLQGE----LPVNISKLTELKML 148
           +    L+ + ++      +   +     ++ + +S N +  E    L  NI+   +L++ 
Sbjct: 5   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 64

Query: 149 DLMANKIT--GRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLD 206
           +              + LR L    +     + +  S            +  L     L+
Sbjct: 65  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLE 124

Query: 207 LTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIP 266
                  G  P     +   +     + +     P        N L+             
Sbjct: 125 HLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184

Query: 267 GSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTN 326
             L +   +    +    +E  L  GL     L+  ++  N     G       +    +
Sbjct: 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK---S 241

Query: 327 STHLNYLALDGNQFEGKIPESIGNF-----SNELSKLYLGGNHIYGKIPASI-----GRL 376
             +L  L L+      +   ++ +      +  L  L L  N I      ++      ++
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 377 RSLTLLDLSYNSISGEIPIEIGQLQGL 403
             L  L+L+ N  S E  + + +++ +
Sbjct: 302 PDLLFLELNGNRFSEEDDV-VDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 4e-04
 Identities = 42/336 (12%), Positives = 93/336 (27%), Gaps = 35/336 (10%)

Query: 200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL-----LDF 254
           ++LK+  +T      +V + +    S+  + L+ N +G E    + + + +       +F
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 255 IYCFNR--------FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGF 306
              F              +  +L     +  +R++ N    T    L +     T     
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 307 NKIVSSGDDEGLS----------FITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELS 356
               +    +  +                N+  L  +    N+ E    +          
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 357 KLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGG 416
            L+       G  P  I  L    L       +          L    +           
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-----AIALKS 241

Query: 417 IPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEE 476
            PN          +   G     +   S      L ++ L  N I  +  + +   + E+
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVD-AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300

Query: 477 ISRLENVVTIDLSDNSLS--GNLPNSLKNCKSLEEL 510
           +  L     ++L+ N  S   ++ + ++   S    
Sbjct: 301 MPDLL---FLELNGNRFSEEDDVVDEIREVFSTRGR 333

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 425 KKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVV 484
           K L    ++  +    +        S+  I LS N I     +     L E I+  +++ 
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARW----LSENIASKKDLE 62

Query: 485 TIDLSDNSLSGNLPNSLKNCKSLEELLM 512
             + SD           +  + L + L+
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALL 90

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 5/83 (6%)

Query: 487 DLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNKLS 542
            ++      ++   L    S++E++++ N         +   +A  K LE+ + S     
Sbjct: 14  AITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG 72

Query: 543 GSIPSDLQNLQALRSLNLTFNNL 565
                  + L+ L    L    L
Sbjct: 73  RVKDEIPEALRLLLQALLKCPKL 95

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 488 LSDNSLSGNLPNSLKNC------KSLEELLMAYNQFSGPIPNIVAE-----LKGLEVLDL 536
           L+D  LS     ++ +         L+ L + YN+        +       +  L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 537 SSNKLS--GSIPSDLQNLQALRSLN 559
           + N+ S    +  +++ + + R   
Sbjct: 310 NGNRFSEEDDVVDEIREVFSTRGRG 334

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 40/214 (18%), Positives = 70/214 (32%), Gaps = 14/214 (6%)

Query: 354 ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI 413
              K+  G +++   +  +   L  +T L      ++  I   +  L  L  L L  N+I
Sbjct: 20  NAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQI 75

Query: 414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLS--IDLSNNRINGNIPKGILR 471
               P          ++  +  +    I          L+         + G     +L 
Sbjct: 76  TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

Query: 472 PLPEEISRLENVVTIDLSDNSLSGNLPNS----LKNCKSLEELLMAYNQFSGPIPNIVAE 527
               +I+ +  +  +        GN   S    L N   L  L    N+ S   P  +A 
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193

Query: 528 LKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT 561
           L  L  + L +N++S   P  L N   L  + LT
Sbjct: 194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 35/219 (15%), Positives = 66/219 (30%), Gaps = 14/219 (6%)

Query: 246 DTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG 305
             L N +      +  T  +  +  +L  I  +      +      G+  L  L    + 
Sbjct: 16  PALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71

Query: 306 FNKIVSSGDDEGL-SFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGG-- 362
            N+I      + L        +   L  ++        K  +       +++ L      
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 363 ---NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPN 419
                   +I           L  LS  +        +  L  L  L    N+I    P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 420 SLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSN 458
            LA+L  L ++ L  N+++   P    N  +L  + L+N
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 8e-06
 Identities = 37/244 (15%), Positives = 75/244 (30%), Gaps = 36/244 (14%)

Query: 142 LTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLEN 201
           L     +    + +T  VT   L  + +L     G           +  +    +  L N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTG-----------VTTI--EGVQYLNN 64

Query: 202 LKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRF 261
           L  L+L  N++     + +  + +L  +                  L ++        + 
Sbjct: 65  LIGLELKDNQI-----TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119

Query: 262 TGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFI 321
           T              +  +        L   L  +  +       N    S  +  +S +
Sbjct: 120 T-------------DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL 166

Query: 322 TSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTL 381
           T L N + L  L  D N+     P  + +  N L +++L  N I    P  +    +L +
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP--LASLPN-LIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 382 LDLS 385
           + L+
Sbjct: 222 VTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 16/211 (7%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           L +   +    ++++  +      L G+  L   G  +   I   +  L  L  ++L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGV-TTIEG-VQYLNNLIGLELKDN 73

Query: 436 ELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD----- 490
           ++T   P+      + L +  +  +    I         +  S     VT          
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 491 -NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL 549
                  + N            ++           +A L  L  L    NK+S   P  L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 550 QNLQALRSLNLTFNNLEGVVPSEGIFRNMSN 580
            +L  L  ++L  N +  V P      N SN
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP----LANTSN 218

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 36/249 (14%), Positives = 69/249 (27%), Gaps = 47/249 (18%)

Query: 166 NLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTS 225
            L +   +  GK+ +  ++            + L+ +  L      +  T    +  + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT----------QADLDGITTLSAFGTGV--TTIEGVQYLNN 64

Query: 226 LVHLRLASNQL------GGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIR 279
           L+ L L  NQ+               +   N L  +             L +     +  
Sbjct: 65  LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP 124

Query: 280 MTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQ 339
           +        L   L  +  +       N    S  +  +S +T L N + L  L  D N+
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK 184

Query: 340 FEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQ 399
                P                           +  L +L  + L  N IS   P  +  
Sbjct: 185 ISDISP---------------------------LASLPNLIEVHLKNNQISDVSP--LAN 215

Query: 400 LQGLQVLGL 408
              L ++ L
Sbjct: 216 TSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 30/220 (13%), Positives = 62/220 (28%), Gaps = 18/220 (8%)

Query: 117 NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG 176
            L     +    +N+   +    + L  +  L      +T   T + ++ L +L  L   
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT---TIEGVQYLNNLIGLELK 71

Query: 177 KNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQL 236
            N +    P      I         LK +       +           + V      + L
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 237 GGEIPYDVRDTLPNLLDF-----IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPP 291
                   + T  + L                     L NL+ +  ++   N +      
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--IS 189

Query: 292 GLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLN 331
            L +LP L   ++  N+I        +S + + +N   + 
Sbjct: 190 PLASLPNLIEVHLKNNQI------SDVSPLANTSNLFIVT 223

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 6e-04
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 51  YWNPSSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGN 110
                           +          LS    + +    + NLS L +++  +NK+S  
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 111 LPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDL 150
            P  + +L  L  +++  N +    P  ++  + L ++ L
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 12/70 (17%)

Query: 421 LANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRL 480
           LANL KL  +    N+++   P    +  +L+ + L NN+I+   P          ++  
Sbjct: 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP----------LANT 216

Query: 481 ENVVTIDLSD 490
            N+  + L++
Sbjct: 217 SNLFIVTLTN 226

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL 135
           L+L+   L  T+  H+  L  +  + L +N+L    P  +  L  L VL  S N L+   
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 136 PVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWG--SIPPSIANLIP 193
            V        + L L  N++        L +   L +LN   N L     I   +A ++P
Sbjct: 60  GVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 194 S 194
           S
Sbjct: 118 S 118

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 17/133 (12%)

Query: 122 RVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW 181
           RVL+++  +L   +  ++ +L  +  LDL  N++        L  LR L+VL    N L 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALE 56

Query: 182 GSIPPSIANLIPSDLSRLENLKVLDLTINRLAGT-VPSTIYNMTSLVHLRLASNQLGGEI 240
                         ++ L  L+ L L  NRL  +     + +   LV L L  N L  E 
Sbjct: 57  ----------NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

Query: 241 PY--DVRDTLPNL 251
                + + LP++
Sbjct: 107 GIQERLAEMLPSV 119

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 26/131 (19%), Positives = 51/131 (38%), Gaps = 14/131 (10%)

Query: 430 IDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLS 489
           + L+  +LT  +         +  +DLS+NR+    P          ++ L  +  +  S
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP---------ALAALRCLEVLQAS 51

Query: 490 DNSLSGNLPNSLKNCKSLEELLMAYNQF-SGPIPNIVAELKGLEVLDLSSNKLSGSIPSD 548
           DN+      + + N   L+ELL+  N+         +     L +L+L  N L       
Sbjct: 52  DNA--LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109

Query: 549 LQNLQALRSLN 559
            +  + L S++
Sbjct: 110 ERLAEMLPSVS 120

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 454 IDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMA 513
           + L++  +               + +L  V  +DLS N L    P +L   + LE L  +
Sbjct: 3   LHLAHKDLTV----------LCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQAS 51

Query: 514 YNQFSGPIPNIVAELKGLEVLDLSSNKL-SGSIPSDLQNLQALRSLNLTFNNLEGV 568
            N                + L L +N+L   +    L +   L  LNL  N+L   
Sbjct: 52  DNALENVDGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 6e-06
 Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
           +VL LA  ++   +   L  L  +  +DLS N L    P +    + L  +  S+N +  
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN 57

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSDNSL-SGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
                      + ++ L  +  + L +N L        L +C  L  L +  N       
Sbjct: 58  ----------VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EE 106

Query: 523 NIVAELKGL 531
            I   L  +
Sbjct: 107 GIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (96), Expect = 8e-05
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 26/106 (24%)

Query: 358 LYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL-------------- 403
           L+L    +   +   + +L  +T LDLS+N +    P  +  L+ L              
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 404 --------QVLGLAGNEIPGG-IPNSLANLKKLNQIDLSGNELTGE 440
                   Q L L  N +        L +  +L  ++L GN L  E
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 276 QIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLAL 335
           +++ + H  L  T+   L  L  +   ++  N++ +            +  ++      +
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 336 DGNQFEGKIPESIGNFSNELSKLYLGGNHI-YGKIPASIGRLRSLTLLDLSYNSISGEIP 394
           DG     ++ E           L L  N +        +     L LL+L  NS+  E  
Sbjct: 59  DGVANLPRLQE-----------LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

Query: 395 IE 396
           I+
Sbjct: 108 IQ 109

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 10/130 (7%)

Query: 203 KVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL--LDFIYCFNR 260
           +VL L    L  TV   +  +  + HL L+ N+L    P      L  L  L+ +   + 
Sbjct: 1   RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53

Query: 261 FTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSF 320
               + G  +     +++   + L +      L + P L   N+  N +    +      
Sbjct: 54  ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERL 112

Query: 321 ITSLTNSTHL 330
              L + + +
Sbjct: 113 AEMLPSVSSI 122

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.6 bits (106), Expect = 6e-06
 Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 15/186 (8%)

Query: 203 KVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFT 262
             +D T   L   +P  I        L L  N+LG      +   LP+L+      N+ T
Sbjct: 11  TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 263 GKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFIT 322
           G  P +    ++IQ +++  N ++         L  L+T N+  N+I             
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG------- 120

Query: 323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLL 382
           S  +   L  L L  N F       +  F+  L K  L G       P+    +R + + 
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIK 175

Query: 383 DLSYNS 388
           DL ++ 
Sbjct: 176 DLPHSE 181

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 40/206 (19%)

Query: 344 IPESIGNFSNELSKLYLGGNHIYGKIPASI-GRLRSLTLLDLSYNSISGEIPIEIGQLQG 402
           IP  I       ++L L  N +       + GRL  L  L+L  N ++G  P        
Sbjct: 23  IPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 403 LQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN 462
           +Q L L  N+I          L +L  ++L  N+++  +P SF +  SL S++L++N  N
Sbjct: 80  IQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139

Query: 463 GNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIP 522
            N                E +    L+  +     P                        
Sbjct: 140 CNCHLAWF---------AEWLRKKSLNGGAARCGAP------------------------ 166

Query: 523 NIVAELKGLEVLDLSSNKLSGSIPSD 548
              ++++ +++ DL  ++   S  + 
Sbjct: 167 ---SKVRDVQIKDLPHSEFKCSSENS 189

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 44/191 (23%), Positives = 69/191 (36%), Gaps = 16/191 (8%)

Query: 376 LRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGN 435
           L       L   +++  +      L  +  L      I     + +  L  L QI+ S N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN 72

Query: 436 ELTGEIPIS--------FGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTID 487
           +LT   P+           N   +  I    N  N          + +            
Sbjct: 73  QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132

Query: 488 LSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS 547
           L  +S + +  ++L    SL++L  + NQ +   P  +A L  LE LD+SSNK+S    S
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD--IS 188

Query: 548 DLQNLQALRSL 558
            L  L  L SL
Sbjct: 189 VLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 31/202 (15%), Positives = 55/202 (27%), Gaps = 32/202 (15%)

Query: 142 LTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLEN 201
           L E     L    +T  V+   L  + +LQ    G   + G             +  L N
Sbjct: 17  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-------------VEYLNN 63

Query: 202 LKVLDLTINRLAGTV-------------PSTIYNMTSLVHLRLASNQLGGEIPYDVRDTL 248
           L  ++ + N+L                  +      + +        L            
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 249 PNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNK 308
              L  +      +  I           + ++  +  + T    L NL  L   +I  NK
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 183

Query: 309 IVSSGDDEGLSFITSLTNSTHL 330
           +        +S +  LTN   L
Sbjct: 184 V------SDISVLAKLTNLESL 199

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 27/218 (12%), Positives = 58/218 (26%), Gaps = 24/218 (11%)

Query: 369 IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIP---------- 418
           IP+ +   R+   L      +             L+ + ++ N++   I           
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 419 ----------NSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKG 468
                         N +    +      L     I        +           +    
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140

Query: 469 ILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAEL 528
                   +      V + L+ N +      +    +  E  L   N       ++    
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200

Query: 529 KGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLE 566
            G  +LD+S  ++       L+NL+ LR+ +    NL+
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 1e-04
 Identities = 38/241 (15%), Positives = 71/241 (29%), Gaps = 22/241 (9%)

Query: 192 IPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNL 251
           IPSDL R  N   L   + +L             L  + ++ N +   I  DV   LP L
Sbjct: 23  IPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 252 LDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVS 311
            +           I              +  N                + +++    +  
Sbjct: 81  HEIRIEKANNLLYINPEAFQNLPNLQYLLISN------TGIKHLPDVHKIHSLQKVLLDI 134

Query: 312 SGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPA 371
             +    +   +         + L  N+   +   +      +L +L L  N+   ++P 
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194

Query: 372 SI-GRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQI 430
            +        +LD+S   I       +  L+ L+               S  NLKKL  +
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR-------------STYNLKKLPTL 241

Query: 431 D 431
           +
Sbjct: 242 E 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 3/49 (6%)

Query: 499 NSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS 547
           +          L ++  +        +  LK L      + K    +P+
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT 240

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 6e-05
 Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 22/138 (15%)

Query: 88  SPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKM 147
           +    N    R + L+  K+   +      L +   ++ S N ++ +L      L  LK 
Sbjct: 11  AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKT 67

Query: 148 LDLMANKITGRVTDDQ------------LRNLRSLQVLNFGKNL-------LWGSIPPSI 188
           L +  N+I                      +L  L  L+   +L       +  +   + 
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK 127

Query: 189 ANLIPSDLSRLENLKVLD 206
            +     + ++  ++VLD
Sbjct: 128 KHYRLYVIYKVPQVRVLD 145

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 9e-05
 Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 7/138 (5%)

Query: 400 LQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNN 459
               + L L G +IP  I N  A L + + ID S NE+       F   + L ++ ++NN
Sbjct: 17  AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNN 73

Query: 460 RINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSG 519
           RI                  L N   ++L D     +L +    C               
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL----RNPVTNKKH 129

Query: 520 PIPNIVAELKGLEVLDLS 537
               ++ ++  + VLD  
Sbjct: 130 YRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 106 KLSGNLPREIG---NLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDD 162
           KL+  L  +     N  R R L++    +   +    + L +   +D   N+I      D
Sbjct: 2   KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR---KLD 57

Query: 163 QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYN 222
               LR L+ L    N +          L       L N  +++L       ++ S  Y 
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117

Query: 223 MTS 225
              
Sbjct: 118 CIL 120

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 9/147 (6%)

Query: 346 ESIGNFSN--ELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGL 403
           E    ++N     +L L G  I   I      L     +D S N I          L+ L
Sbjct: 9   EQAAQYTNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRL 65

Query: 404 QVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING 463
           + L +  N I          L  L ++ L+ N L     +        L+          
Sbjct: 66  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125

Query: 464 NIPKGILRPLPEEISRLENVVTIDLSD 490
           N            I ++  V  +D   
Sbjct: 126 NKKHYR----LYVIYKVPQVRVLDFQK 148

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 6/100 (6%)

Query: 493 LSGNLPN---SLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDL 549
           L+  L        N     EL +   +    I N+ A L   + +D S N++        
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEI--RKLDGF 59

Query: 550 QNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKL 589
             L+ L++L +  N +  +              +  N  L
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 31/141 (21%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 314 DDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK--IPA 371
           D +GL     L        L    +     +     N    L  L L  N +Y    + +
Sbjct: 28  DLKGLRSDPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPE-LLSLNLSNNRLYRLDDMSS 85

Query: 372 SIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNS-------LANL 424
            + +  +L +L+LS N +  E  ++  +   L+ L L GN +     +            
Sbjct: 86  IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

Query: 425 KKLNQIDLSGNELTGEIPISF 445
            KL ++D  G+EL    PI+F
Sbjct: 146 PKLLRLD--GHELPP--PIAF 162

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 0.001
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 76  LNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSG--NLPREIGNLFRLRVLNISFNNLQG 133
           LN  S     T+     N+  L S+ L NN+L    ++   +     L++LN+S N L+ 
Sbjct: 47  LNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105

Query: 134 ELPVNISKLTELKMLDLMANKITGRVTDDQ------LRNLRSLQVLN 174
           E  ++  K  +L+ L L  N ++    D              L  L+
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.003
 Identities = 22/124 (17%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 447 NFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG--NLPNSLKNC 504
             +S   +   N  +  N    +   L      +  +++++LS+N L    ++ + ++  
Sbjct: 31  GLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKA 90

Query: 505 KSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN 564
            +L+ L ++ N+          +   LE L L  N LS +       + A+R        
Sbjct: 91  PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR 150

Query: 565 LEGV 568
           L+G 
Sbjct: 151 LDGH 154

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.003
 Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 15/129 (11%)

Query: 450 SLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEE 509
           S  ++DL   R               ++      V ++   +  +  L    +N   L  
Sbjct: 23  SQQALDLKGLRS------------DPDLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLS 69

Query: 510 LLMAYNQFSG--PIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEG 567
           L ++ N+      + +IV +   L++L+LS N+L      D      L  L L  N+L  
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 568 VVPSEGIFR 576
               +  + 
Sbjct: 130 TFRDQSTYI 138

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 4e-04
 Identities = 18/156 (11%), Positives = 41/156 (26%), Gaps = 8/156 (5%)

Query: 200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFN 259
                L  T +         +    +L  L + + Q    +       L  L +     +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 260 RFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLS 319
                 P + H    +  + ++ N LE +L         L+   +  N +  S       
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCA----- 120

Query: 320 FITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNEL 355
            +  L          +   + +      + +  N  
Sbjct: 121 -LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 31/177 (17%), Positives = 61/177 (34%), Gaps = 8/177 (4%)

Query: 163 QLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYN 222
                +S+      K  L G IPP I  +  + LS L+  K L L+ N +       I +
Sbjct: 13  IFEERKSVVATEAEKVELHGMIPP-IEKM-DATLSTLKACKHLALSTNNI-----EKISS 65

Query: 223 MTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTH 282
           ++ + +LR+ S         +  D + + L+ ++        + G    +    +    +
Sbjct: 66  LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN 125

Query: 283 NLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYL-ALDGN 338
            +        L  L  L    +  N + +   +   +    +     L  L  LDG 
Sbjct: 126 KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	929
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.98
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.97
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.41
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.34
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.56
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.18
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.43
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	94.62
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	91.31
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	87.54
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	80.36

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=3.9e-43  Score=382.97  Aligned_cols=293  Identities=29%  Similarity=0.479  Sum_probs=207.9

Q ss_pred             cCChhhHHHHHHHHhhcCCCCCCCCCCCCCCCCCCC--CCcceeeCCCCC--cEEEEEcCCCCCcc--ccCCCCCCCCCC
Q 002376           24 VGINTDKEALMSFKSQISQESPSSPLSYWNPSSSPC--TWPGVICNNFGN--RVIGLNLSSFGLEG--TISPHIGNLSFL   97 (929)
Q Consensus        24 ~~~~~~~~aLl~~k~~~~~~~~~~~l~~w~~~~~~c--~w~gv~c~~~~~--~v~~l~l~~~~l~g--~i~~~l~~L~~L   97 (929)
                      .|+++||+||++||+++.++   ..+++|..++|||  .|+||+|++.++  ||+.|||++++++|  .+|++|++|++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~---~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNP---TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC---GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHCCCC---CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            58999999999999998753   4689999999999  599999997554  89999999999998  578899999999


Q ss_pred             CEEEeec-CCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEcc
Q 002376           98 RSIQLQN-NKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFG  176 (929)
Q Consensus        98 ~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls  176 (929)
                      ++|+|++ |+++|.+|++|++|++|++|||++|+|.+..|..+..+.+|+++++++|++.+.+|.. +.++++|++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~  157 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchh-hccCcccceeecc
Confidence            9999986 7888888888888888888888888888888888888888888888888887666655 7777777777777


Q ss_pred             ccccCCCCCccccccCCCccCCCCcc-cEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceee
Q 002376          177 KNLLWGSIPPSIANLIPSDLSRLENL-KVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFI  255 (929)
Q Consensus       177 ~N~l~~~~p~~i~~l~p~~~~~l~~L-~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~  255 (929)
                      +|.+.|.+|..+.        .+.++ +.+++++|++++..|..+.++..+ .++                         
T Consensus       158 ~n~l~~~ip~~~~--------~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~-------------------------  203 (313)
T d1ogqa_         158 GNRISGAIPDSYG--------SFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVD-------------------------  203 (313)
T ss_dssp             SSCCEEECCGGGG--------CCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEE-------------------------
T ss_pred             ccccccccccccc--------cccccccccccccccccccccccccccccc-ccc-------------------------
Confidence            7766555444332        23332 455555555555444444433222 233                         


Q ss_pred             ccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEc
Q 002376          256 YCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLAL  335 (929)
Q Consensus       256 l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~L  335 (929)
                      ++.+.+.+.+|..+..+++++.+++++|.+++.+|                                .+..+++|++|+|
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--------------------------------~~~~~~~L~~L~L  251 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------------------------------KVGLSKNLNGLDL  251 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------------------------------GCCCCTTCCEEEC
T ss_pred             ccccccccccccccccccccccccccccccccccc--------------------------------ccccccccccccC
Confidence            33333444445555555556666666665554433                                3344566677777


Q ss_pred             cCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCC
Q 002376          336 DGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNS  388 (929)
Q Consensus       336 s~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  388 (929)
                      ++|+++|.+|+.++.++ +|++|+|++|+|+|.+|. ++++++|+.+++++|+
T Consensus       252 s~N~l~g~iP~~l~~L~-~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         252 RNNRIYGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGGGCT-TCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             ccCeecccCChHHhCCC-CCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            77777777777777665 577777777777776663 4666667777777665

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=384.68  Aligned_cols=242  Identities=24%  Similarity=0.286  Sum_probs=176.7

Q ss_pred             hCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||+||+|++.               ...+.|.+|++++++++|||||+++|++.+.      ..++
T Consensus         7 ~~~~~~~~~lG~G~fg~Vy~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~------~~~l   80 (276)
T d1uwha_           7 DGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAP------QLAI   80 (276)
T ss_dssp             TTCCCCCSEEEECSSCEEEEEESSSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSS------SCEE
T ss_pred             cccEEEEEEEeeCCCcEEEEEEECCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEecc------EEEE
Confidence            468899999999999999999865               2356899999999999999999999997532      2699


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||||++|+|.++++...         .++.|||+||+|||+.   +||||||||+|||+++++.+||+|||+|+.....
T Consensus        81 v~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~  157 (276)
T d1uwha_          81 VTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAK---SIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW  157 (276)
T ss_dssp             EEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTSSEEECCCCCSCC----
T ss_pred             EEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcC---CEeccccCHHHEEEcCCCCEEEccccceeecccc
Confidence            999999999999986332         2367999999999998   9999999999999999999999999999876422


Q ss_pred             cCCCCCccccceeccccccccccccCCC---CCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE---RPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~---~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      .    .........||+.|||||++.+.   .|+.++||||+|+++||+.++..++......  +.+...+...... +.
T Consensus       158 ~----~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~--~~~~~~~~~~~~~-p~  230 (276)
T d1uwha_         158 S----GSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNR--DQIIFMVGRGYLS-PD  230 (276)
T ss_dssp             ------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCH--HHHHHHHHHTSCC-CC
T ss_pred             C----CcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChH--HHHHHHHhcCCCC-Cc
Confidence            1    11223456899999999998643   5899999999998888876655554433221  0111111111000 00


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                       ........++.+++++.+||+.||++||||+||++.|+.+.+..+
T Consensus       231 -~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~Le~l~~~~P  275 (276)
T d1uwha_         231 -LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILASIELLARSLP  275 (276)
T ss_dssp             -GGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred             -chhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHcCC
Confidence             000111112223347779999999999999999999999887543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.8e-44  Score=383.64  Aligned_cols=248  Identities=20%  Similarity=0.283  Sum_probs=171.9

Q ss_pred             CCChHHHHHhhC---------CCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccC
Q 002376          650 KISYDELRRATG---------NFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVR  700 (929)
Q Consensus       650 ~~~~~~l~~~~~---------~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~  700 (929)
                      .++++|+.+++.         +|+..++||+|+||+||+|++.                    ...++|.+|+++|++++
T Consensus         6 ~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~   85 (299)
T d1jpaa_           6 PFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFD   85 (299)
T ss_dssp             GGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCC
Confidence            345556665554         4455689999999999998763                    12457999999999999


Q ss_pred             CccccceeeecccCCCCCcceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCC
Q 002376          701 HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPG  771 (929)
Q Consensus       701 Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~  771 (929)
                      |||||+++|+|...+     ..++|||||++|+|.++++...         .++.|||+||+|||+.   +|+||||||+
T Consensus        86 HpnIv~l~g~~~~~~-----~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHrDlKp~  157 (299)
T d1jpaa_          86 HPNVIHLEGVVTKST-----PVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADM---NYVHRDLAAR  157 (299)
T ss_dssp             CTTBCCEEEEECSSS-----SCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGG
T ss_pred             CCCCccEEEEEeeCC-----EEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhC---CCccCccccc
Confidence            999999999996543     3799999999999999876432         2367999999999998   9999999999


Q ss_pred             CeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhc
Q 002376          772 NILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESN  850 (929)
Q Consensus       772 NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~  850 (929)
                      |||++.++.+||+|||+|+.+...... ..........||+.|||||++.++.++.++||||+|+++||+.+ ...++..
T Consensus       158 NILl~~~~~~Kl~DFGla~~~~~~~~~-~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~  236 (299)
T d1jpaa_         158 NILVNSNLVCKVSDFGLSRFLEDDTSD-PTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWD  236 (299)
T ss_dssp             GEEECTTCCEEECCC------------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTT
T ss_pred             eEEECCCCcEEECCcccceEccCCCCc-ceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCC
Confidence            999999999999999999976432111 11112233468999999999999999999999999988887643 3333332


Q ss_pred             CCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          851 LPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       851 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ...  .+     +........  +.+.+...++.+.+++.+||+.||++||||+||++.|+++.+
T Consensus       237 ~~~--~~-----~~~~i~~~~--~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~L~~~l~  292 (299)
T d1jpaa_         237 MTN--QD-----VINAIEQDY--RLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNTLDKMIR  292 (299)
T ss_dssp             CCH--HH-----HHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCH--HH-----HHHHHHcCC--CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence            221  11     111111111  001111122233347889999999999999999999998865

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-43  Score=369.35  Aligned_cols=235  Identities=26%  Similarity=0.343  Sum_probs=168.8

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||+||+|++.              ...++|.+|++++++++|||||+++|+|.+.+     ..++||
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~-----~~~lv~   79 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQA-----PICLVF   79 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-----SCEEEE
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCCcccccceeccCC-----ceEEEE
Confidence            47888899999999999999764              23578999999999999999999999996543     379999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||++|+|.+++...+         .++.|||.||+|||+.   +|+||||||+|||+|+++.+||+|||+|+...... 
T Consensus        80 E~~~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~-  155 (263)
T d1sm2a_          80 EFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-  155 (263)
T ss_dssp             ECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCTTCSGGGEEECGGGCEEECSCC----------
T ss_pred             EecCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhcc---ceeecccchhheeecCCCCeEecccchheeccCCC-
Confidence            9999999999886432         2468999999999998   99999999999999999999999999998764321 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          ........||+.|||||++.+..++.++||||+|+++||+.....+..... ...+++. .+.......  ...  
T Consensus       156 ----~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~-~~~~~~~-~i~~~~~~~--~p~--  225 (263)
T d1sm2a_         156 ----YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR-SNSEVVE-DISTGFRLY--KPR--  225 (263)
T ss_dssp             -------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSC-CHHHHHH-HHHHTCCCC--CCT--
T ss_pred             ----ceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCC-CHHHHHH-HHHhcCCCC--Ccc--
Confidence                112234579999999999999999999999999988777644222111111 1111111 111110000  000  


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                       .+..++. +++.+||+.||++||||+||++.|+++.+.
T Consensus       226 -~~~~~l~-~li~~cl~~~p~~Rps~~~il~~L~~i~es  262 (263)
T d1sm2a_         226 -LASTHVY-QIMNHCWKERPEDRPAFSRLLRQLAEIAES  262 (263)
T ss_dssp             -TSCHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -ccCHHHH-HHHHHHccCCHhHCcCHHHHHHHHHHHHhC
Confidence             1112233 388899999999999999999999998763

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-43  Score=378.32  Aligned_cols=241  Identities=20%  Similarity=0.294  Sum_probs=179.7

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEecccc---------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERT---------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~---------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++++...++|+..+.||+|+||+||+|++.               ...++|.+|++++++++|||||+++|+|.+.+   
T Consensus        10 ~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~---   86 (287)
T d1opja_          10 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREP---   86 (287)
T ss_dssp             CTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSS---
T ss_pred             cccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCCEecCCccEeeCC---
Confidence            334444568888999999999999999765               23578999999999999999999999996543   


Q ss_pred             cceEEEEEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                        ..++|||||++|+|.+++...          ..++.|||.||+|||+.   +|+||||||+|||+++++.+||+|||+
T Consensus        87 --~~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHrDlKp~NILl~~~~~~Kl~DFG~  161 (287)
T d1opja_          87 --PFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGL  161 (287)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCC
T ss_pred             --eeEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHC---CcccCccccCeEEECCCCcEEEccccc
Confidence              379999999999999988632          12367999999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      |+.....     .........||+.|||||++.++.|+.++||||+|+++|++.....++.... ...+     +.....
T Consensus       162 a~~~~~~-----~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~-~~~~-----~~~~i~  230 (287)
T d1opja_         162 SRLMTGD-----TYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGI-DLSQ-----VYELLE  230 (287)
T ss_dssp             TTTCCSS-----SSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTC-CHHH-----HHHHHH
T ss_pred             eeecCCC-----CceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcc-hHHH-----HHHHHh
Confidence            9876322     1122334568999999999999999999999999987777543222211110 1111     111111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ...  +.+.++..++-+.+++.+||+.||++||||+||++.|+.+.+
T Consensus       231 ~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~~L~~~~~  275 (287)
T d1opja_         231 KDY--RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ  275 (287)
T ss_dssp             TTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTS
T ss_pred             cCC--CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHH
Confidence            110  111111122233348889999999999999999999988643

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-42  Score=368.41  Aligned_cols=240  Identities=20%  Similarity=0.239  Sum_probs=178.3

Q ss_pred             CCCCCce-eecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHEN-LIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~-~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|...+ +||+|+||+||+|.+.                   ...++|.+|+++|++++|||||+++|+|.+.      
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~------   81 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAE------   81 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESS------
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccC------
Confidence            4555666 4999999999998643                   1246799999999999999999999998532      


Q ss_pred             eEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..|+|||||++|+|.+++...+         .++.|||.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.
T Consensus        82 ~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~---~iiHrDlKp~Nill~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          82 ALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             SEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred             eEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCcCchhheeeccCCceeeccchhhhc
Confidence            2799999999999999875432         3368999999999998   999999999999999999999999999997


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      +.....   .........||+.|||||++.++.++.++||||+|+++||+.. +..++.....       .++...+...
T Consensus       159 ~~~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~-------~~~~~~i~~~  228 (285)
T d1u59a_         159 LGADDS---YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKG-------PEVMAFIEQG  228 (285)
T ss_dssp             CTTCSC---EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCT-------HHHHHHHHTT
T ss_pred             cccccc---ccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCH-------HHHHHHHHcC
Confidence            643211   1112234578999999999999999999999999988877543 3333332221       1222211111


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhcc
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQQ  921 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~~  921 (929)
                      .  +.+.++.++.-+.+++.+||+.||++||||.+|++.|+.+........
T Consensus       229 ~--~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~~~~~~  277 (285)
T d1u59a_         229 K--RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLASKV  277 (285)
T ss_dssp             C--CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHTTC
T ss_pred             C--CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhhhcc
Confidence            1  111111122223348889999999999999999999999877655443

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-42  Score=365.66  Aligned_cols=230  Identities=20%  Similarity=0.221  Sum_probs=170.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||+||+|++..                 ..+.|.+|++++++++|||||++++++.+.     ...
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~-----~~~   78 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-----NIQ   78 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccC-----cee
Confidence            3579999999999999999997651                 234688999999999999999999999653     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+|||||++|+|.++++...        .+..|++.||+|||+.   +|+||||||+|||+++++.+||+|||+|+.+..
T Consensus        79 ~ivmEy~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~---~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~  155 (271)
T d1nvra_          79 YLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRY  155 (271)
T ss_dssp             EEEEECCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECEE
T ss_pred             EEEEeccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCccCcccHHHEEECCCCCEEEccchhheeecc
Confidence            99999999999999997433        3467999999999998   999999999999999999999999999997643


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...    .......+||+.|||||++.+..+ +.++||||+|+++|++.++..++....+.     +........... .
T Consensus       156 ~~~----~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~-----~~~~~~~~~~~~-~  225 (271)
T d1nvra_         156 NNR----ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDS-----CQEYSDWKEKKT-Y  225 (271)
T ss_dssp             TTE----ECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTT-----SHHHHHHHTTCT-T
T ss_pred             CCc----cccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChH-----HHHHHHHhcCCC-C
Confidence            211    112344689999999999988876 67899999998877766554444322211     111111111000 0


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ......+++-+.+++.+||+.||++|||++|+++
T Consensus       226 -~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  259 (271)
T d1nvra_         226 -LNPWKKIDSAPLALLHKILVENPSARITIPDIKK  259 (271)
T ss_dssp             -STTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             -CCccccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence             0001112222334777999999999999999864

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-42  Score=366.26  Aligned_cols=227  Identities=23%  Similarity=0.243  Sum_probs=174.0

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ++|+..+.||+|+||+||+|++.                ...+.+.+|++++++++|||||++++++.+.     ...|+
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~-----~~~~i   94 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-----DELWV   94 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEEC-----CEEEE
Confidence            47999999999999999999765                2346799999999999999999999999653     34899


Q ss_pred             EEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          725 VYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      |||||++|+|.+++.+.       +.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.+...  
T Consensus        95 vmEy~~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~--  169 (293)
T d1yhwa1          95 VMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPE--  169 (293)
T ss_dssp             EEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCST--
T ss_pred             EEEecCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCcHHHeEECCCCcEeeccchhheeeccc--
Confidence            99999999999987642       24467999999999998   9999999999999999999999999999876322  


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                          .......+||+.|||||++.+..++.++||||+|+++|++..+..++.....  .+.+.......     ......
T Consensus       170 ----~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~~~~~~-----~~~~~~  238 (293)
T d1yhwa1         170 ----QSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENP--LRALYLIATNG-----TPELQN  238 (293)
T ss_dssp             ----TCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHHC-----SCCCSS
T ss_pred             ----cccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCH--HHHHHHHHhCC-----CCCCCC
Confidence                1123345799999999999999999999999999887776655544432221  11111111110     011111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ++.++..+++++.+||+.||++|||++|+++
T Consensus       239 ~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  269 (293)
T d1yhwa1         239 PEKLSAIFRDFLNRCLDMDVEKRGSAKELLQ  269 (293)
T ss_dssp             GGGSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred             cccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            1223333445777999999999999999874

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-42  Score=360.66  Aligned_cols=222  Identities=22%  Similarity=0.285  Sum_probs=171.8

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++..                   ..+.+.+|++++++++|||||++++++.+.     ..
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-----~~   80 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA-----TR   80 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECS-----SE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEEC-----CE
Confidence            478899999999999999997651                   245688999999999999999999999643     35


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+|||||++|+|.+++....        .++.||+.||+|||+.   +||||||||+|||+++++.+||+|||+|+...
T Consensus        81 ~~ivmEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~  157 (263)
T d2j4za1          81 VYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP  157 (263)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCSCSCCC
T ss_pred             EEEEEeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeeeeccccceecCCCCEeecccceeeecC
Confidence            899999999999999986432        3467999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .        ......+||+.|||||++.+..++.++||||+|+++|++..+..++.....  .+..    ..........
T Consensus       158 ~--------~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~----~~i~~~~~~~  223 (263)
T d2j4za1         158 S--------SRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTY--QETY----KRISRVEFTF  223 (263)
T ss_dssp             C--------CCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHH----HHHHTTCCCC
T ss_pred             C--------CcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCH--HHHH----HHHHcCCCCC
Confidence            2        122345899999999999999999999999999888776665544432211  1111    1111111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                          ++.+++-+++++.+||+.||++|||++|+++
T Consensus       224 ----p~~~s~~~~~li~~~L~~dp~~R~t~~eil~  254 (263)
T d2j4za1         224 ----PDFVTEGARDLISRLLKHNPSQRPMLREVLE  254 (263)
T ss_dssp             ----CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ----CccCCHHHHHHHHHHccCCHhHCcCHHHHHc
Confidence                1112223334777999999999999999985

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-42  Score=375.33  Aligned_cols=232  Identities=19%  Similarity=0.283  Sum_probs=174.8

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..++||+|+||+||+|++.                      ...+.|.+|+.+++++ +|||||+++++|.+.+ 
T Consensus        36 ~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~-  114 (325)
T d1rjba_          36 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG-  114 (325)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             HHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC-
Confidence            357888999999999999998753                      1234688999999998 8999999999996543 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc-------------------------------cccccHHHHHHHhhhCCCCCEEe
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER-------------------------------KNELDITSALDYLHNDCEVPVVH  765 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~-------------------------------~~~~~ia~aL~yLH~~~~~~iiH  765 (929)
                          ..|+|||||++|+|.++++..+                               .++.||+.||+|||+.   +|||
T Consensus       115 ----~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiH  187 (325)
T d1rjba_         115 ----PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVH  187 (325)
T ss_dssp             ----SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEE
T ss_pred             ----eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---Ceee
Confidence                3799999999999999986432                               2357899999999998   9999


Q ss_pred             cCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-h
Q 002376          766 SDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-V  844 (929)
Q Consensus       766 rDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~  844 (929)
                      |||||+|||++.++.+||+|||+|+......    .........||+.|||||++.++.++.++||||+|+++||+.. +
T Consensus       188 RDlKp~Nill~~~~~~Kl~DFGla~~~~~~~----~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g  263 (325)
T d1rjba_         188 RDLAARNVLVTHGKVVKICDFGLARDIMSDS----NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLG  263 (325)
T ss_dssp             TTCSGGGEEEETTTEEEECCCGGGSCGGGCT----TSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTS
T ss_pred             ccCchhccccccCCeEEEeeccccccccCCC----ceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCC
Confidence            9999999999999999999999998764321    1112234578999999999999999999999999988887653 3


Q ss_pred             HHhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHH
Q 002376          845 KWVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLK  911 (929)
Q Consensus       845 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~  911 (929)
                      ..++...+.      +..+........  +.+.+...++.+++++.+||+.||++||||+||++.|.
T Consensus       264 ~~Pf~~~~~------~~~~~~~~~~~~--~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~  322 (325)
T d1rjba_         264 VNPYPGIPV------DANFYKLIQNGF--KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  322 (325)
T ss_dssp             CCSSTTCCC------SHHHHHHHHTTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             CCCCCCCCH------HHHHHHHHhcCC--CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHh
Confidence            444332221      111121111111  11111112223334778999999999999999999985

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-42  Score=367.61  Aligned_cols=237  Identities=20%  Similarity=0.243  Sum_probs=168.7

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      +.|+..++||+|+||+||+|++.                     ...++|.+|++++++++|||||+++|+|.+.+    
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~----   82 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYK----   82 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSS----
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCC----
Confidence            46788899999999999998753                     12347899999999999999999999996543    


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                       ..++|||||.+|++.+++....         .++.|||.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        83 -~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~---~iiHrDlKp~NILl~~~~~~Kl~DFGla~  158 (283)
T d1mqba_          83 -PMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSR  158 (283)
T ss_dssp             -SEEEEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--
T ss_pred             -ceEEEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhcccc---ccccCccccceEEECCCCeEEEcccchhh
Confidence             3899999999999988775322         3467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                      .+.....   .........||+.|||||++.++.++.++||||+|+++||+.....+..... ...+     +.......
T Consensus       159 ~~~~~~~---~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~-~~~~-----~~~~i~~~  229 (283)
T d1mqba_         159 VLEDDPE---ATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL-SNHE-----VMKAINDG  229 (283)
T ss_dssp             ------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC-CHHH-----HHHHHHTT
T ss_pred             cccCCCc---cceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccC-CHHH-----HHHHHhcc
Confidence            7643211   1112234578999999999999999999999999988877643221111111 1111     11111111


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .  +.+.+...+..+.+++.+||+.||++||||+||+++|+++.+.
T Consensus       230 ~--~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~~L~~l~~~  273 (283)
T d1mqba_         230 F--RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRA  273 (283)
T ss_dssp             C--CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred             C--CCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHHHHHHHhhC
Confidence            0  0011111112233488899999999999999999999988764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-41  Score=359.37  Aligned_cols=227  Identities=24%  Similarity=0.355  Sum_probs=167.1

Q ss_pred             CCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          664 SHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      +..++||+|+||+||+|++..                  ..+.|.+|++++++++|||||++++++.+.. .+...+|+|
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~-~~~~~~~iv   90 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTV-KGKKCIVLV   90 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEES-SSCEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeecc-ccCCEEEEE
Confidence            556789999999999997651                  2357889999999999999999999986533 234568999


Q ss_pred             EEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec-CCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD-EEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~-~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||||++|+|.+++++..        .++.||+.||+|||++ .++|+||||||+|||++ +++.+||+|||+|+....  
T Consensus        91 mE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~--  167 (270)
T d1t4ha_          91 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA--  167 (270)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCT--
T ss_pred             EeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHC-CCCEEeCCcChhhceeeCCCCCEEEeecCcceeccC--
Confidence            99999999999986432        3467999999999997 12399999999999996 578999999999985421  


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                            ......+||+.|||||++.+ .++.++||||+|+++|++.....++...... .     .+......... ...
T Consensus       168 ------~~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~-~-----~~~~~i~~~~~-~~~  233 (270)
T d1t4ha_         168 ------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNA-A-----QIYRRVTSGVK-PAS  233 (270)
T ss_dssp             ------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH-H-----HHHHHHTTTCC-CGG
T ss_pred             ------CccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCcccH-H-----HHHHHHHcCCC-Ccc
Confidence                  12345689999999999865 6999999999998888876665554332210 0     11111110000 001


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ......+-+++++.+||+.||++|||++|+++
T Consensus       234 ~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~  265 (270)
T d1t4ha_         234 FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN  265 (270)
T ss_dssp             GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred             cCccCCHHHHHHHHHHccCCHhHCcCHHHHhC
Confidence            11111122334777999999999999999975

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-42  Score=365.03  Aligned_cols=229  Identities=21%  Similarity=0.225  Sum_probs=169.4

Q ss_pred             eeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          667 NLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       667 ~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++||+|+||+||+|.+.                    ...++|.+|++++++++|||||+++|+|...      ..++||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~------~~~lvm   86 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAE------SWMLVM   86 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESS------SEEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccC------CEEEEE
Confidence            57999999999998642                    1135799999999999999999999998431      268999


Q ss_pred             EecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          727 EFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      |||++|+|.++++..+        .++.|||.||+|||+.   +||||||||+|||++.++.+||+|||+|+.+....  
T Consensus        87 E~~~~g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~--  161 (277)
T d1xbba_          87 EMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE--  161 (277)
T ss_dssp             ECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC--
T ss_pred             EcCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhC---CcccCCCcchhhcccccCcccccchhhhhhccccc--
Confidence            9999999999987543        3467999999999998   99999999999999999999999999998764221  


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                       ..........||+.|||||++.+..++.++||||+|+++||+.. +..++.....  .     .+...+....  +.+.
T Consensus       162 -~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~--~-----~~~~~i~~~~--~~~~  231 (277)
T d1xbba_         162 -NYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG--S-----EVTAMLEKGE--RMGC  231 (277)
T ss_dssp             -SEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCH--H-----HHHHHHHTTC--CCCC
T ss_pred             -cccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCH--H-----HHHHHHHcCC--CCCC
Confidence             11122334579999999999999999999999999988877543 3333332221  1     1111111111  1111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      +...++-+.+++.+||+.||++||||+||+++|++.-..
T Consensus       232 p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         232 PAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             CTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence            111222333488899999999999999999999886543

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=359.89  Aligned_cols=235  Identities=20%  Similarity=0.260  Sum_probs=176.2

Q ss_pred             hhCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      ..++|+..+.||+|+||+||+|.+.              ...++|.+|++++++++|||||+++|+|.+.      ..++
T Consensus        11 ~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~------~~~i   84 (272)
T d1qpca_          11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQRLVRLYAVVTQE------PIYI   84 (272)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS------SCEE
T ss_pred             CHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCCEeEEEeeeccC------CeEE
Confidence            3467888999999999999999875              2356899999999999999999999988532      2699


Q ss_pred             EEEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ||||+++|+|.+++...          ..++.|||+||+|||+.   +|+||||||+|||+++++.+||+|||+|+.+..
T Consensus        85 v~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~  161 (272)
T d1qpca_          85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIED  161 (272)
T ss_dssp             EEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred             EEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccchhheeeecccceeeccccceEEccC
Confidence            99999999999877532          23478999999999998   999999999999999999999999999997642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQT  874 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  874 (929)
                      .     .........||+.|||||++.++.++.++||||+|+++||+.+...+..... ...+++. .+....      +
T Consensus       162 ~-----~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~-~~~~~~~-~i~~~~------~  228 (272)
T d1qpca_         162 N-----EYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM-TNPEVIQ-NLERGY------R  228 (272)
T ss_dssp             S-----CEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHH-HHHTTC------C
T ss_pred             C-----ccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCC-CHHHHHH-HHHhcC------C
Confidence            2     1112234578999999999999999999999999988777654322211111 1111111 111110      0


Q ss_pred             hhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          875 IQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       875 ~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ...++.+++-+.+++.+||+.||++||||+||+++|+++-.
T Consensus       229 ~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         229 MVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            00111122223347789999999999999999999998654

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-41  Score=357.50  Aligned_cols=231  Identities=22%  Similarity=0.324  Sum_probs=177.6

Q ss_pred             CCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||+||+|+++              ...++|.+|++++++++|||||+++|+|.+.+     ..++||
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~-----~~~iv~   78 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQR-----PIFIIT   78 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSS-----SEEEEE
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCC-----ceEEEE
Confidence            58899999999999999999875              23578999999999999999999999996533     389999


Q ss_pred             EecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccC
Q 002376          727 EFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVD  797 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~  797 (929)
                      ||+++|++.+++....         .++.|+|+||+|||+.   +|+||||||+||++++++.+||+|||+|+.+.... 
T Consensus        79 Ey~~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~-  154 (258)
T d1k2pa_          79 EYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDE-  154 (258)
T ss_dssp             ECCTTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHT---TBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSS-
T ss_pred             EccCCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhc---CcccccccceeEEEcCCCcEEECcchhheeccCCC-
Confidence            9999999998865322         3467999999999998   99999999999999999999999999998764321 


Q ss_pred             CCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          798 NQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       798 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                          ........||+.|||||++.+..++.++||||+|+++||+.+ ...++.....  .++. ..+.....      ..
T Consensus       155 ----~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~--~~~~-~~i~~~~~------~~  221 (258)
T d1k2pa_         155 ----YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTN--SETA-EHIAQGLR------LY  221 (258)
T ss_dssp             ----CCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCH--HHHH-HHHHTTCC------CC
T ss_pred             ----ceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCH--HHHH-HHHHhCCC------CC
Confidence                112234578999999999999999999999999988887654 3444433322  1111 11111110      01


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      .++..++.+++++.+||+.||++||||+|+++.|.++
T Consensus       222 ~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~L~di  258 (258)
T d1k2pa_         222 RPHLASEKVYTIMYSCWHEKADERPTFKILLSNILDV  258 (258)
T ss_dssp             CCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHCC
T ss_pred             CcccccHHHHHHHHHHccCCHhHCcCHHHHHHHhhCC
Confidence            1111222334488899999999999999999998764

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-42  Score=364.49  Aligned_cols=227  Identities=21%  Similarity=0.294  Sum_probs=170.1

Q ss_pred             CCCCCceeecccCceeEEecccc----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      +.|+..+.||+|+||+||+|++.                ...+.|.+|++++++++|||||++++++.+.     ...|+
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~-----~~~~l   86 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE-----NNLWI   86 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeC-----CeEEE
Confidence            46888999999999999999865                2346789999999999999999999999643     34899


Q ss_pred             EEEecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||||++|+|.+++.+.         +.++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+.....
T Consensus        87 vmEy~~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~---~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~  163 (288)
T d2jfla1          87 LIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDN---KIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT  163 (288)
T ss_dssp             EEECCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECHHH
T ss_pred             EEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEeecChhheeECCCCCEEEEechhhhccCCC
Confidence            99999999999987532         23467999999999998   9999999999999999999999999999865321


Q ss_pred             cCCCCCccccceeccccccccccccC-----CCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhccc
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGL-----GERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSN  870 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  870 (929)
                            .......+||+.|||||++.     +..|+.++||||+||++|++..+..++.....  .+++......    .
T Consensus       164 ------~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~--~~~~~~i~~~----~  231 (288)
T d2jfla1         164 ------IQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNP--MRVLLKIAKS----E  231 (288)
T ss_dssp             ------HHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCG--GGHHHHHHHS----C
T ss_pred             ------cccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCH--HHHHHHHHcC----C
Confidence                  11223468999999999984     45689999999999888877665554433221  1111111111    1


Q ss_pred             chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          871 ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       871 ~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      . .....+..++.-+++++.+||+.||++|||++|+++
T Consensus       232 ~-~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~  268 (288)
T d2jfla1         232 P-PTLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQ  268 (288)
T ss_dssp             C-CCCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred             C-CCCCccccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            0 011111112223334777999999999999999975

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-41  Score=355.04  Aligned_cols=230  Identities=23%  Similarity=0.287  Sum_probs=160.9

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||+||+|++..                  ..+.|.+|++++++++|||||++++++.+.   ....+
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~---~~~~~   80 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TNTTL   80 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC-------CE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeC---CCCEE
Confidence            579999999999999999997651                  235688999999999999999999998652   23347


Q ss_pred             EEEEEecCCCCcccccccc------------ccccccHHHHHHHhhhCC--CCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE------------RKNELDITSALDYLHNDC--EVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~------------~~~~~~ia~aL~yLH~~~--~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                      |+|||||++|+|.+++.+.            ..++.|++.||+|||+..  ..+||||||||+|||+++++.+||+|||+
T Consensus        81 ~ivmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~  160 (269)
T d2java1          81 YIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGL  160 (269)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHH
T ss_pred             EEEEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccc
Confidence            9999999999999988531            234679999999999862  12499999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhc
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      |+.+...      .......+||+.|||||++.+..|+.++||||+|+++|++.+...++.....  .++...-......
T Consensus       161 a~~~~~~------~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~--~~~~~~i~~~~~~  232 (269)
T d2java1         161 ARILNHD------TSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ--KELAGKIREGKFR  232 (269)
T ss_dssp             HHHC-----------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHTCCC
T ss_pred             eeecccC------CCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCH--HHHHHHHHcCCCC
Confidence            9976422      1123346899999999999999999999999999888877655544332221  1111111111110


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         ......++    -+++++.+||+.||++|||++|+++
T Consensus       233 ---~~~~~~s~----~l~~li~~~L~~dp~~Rps~~ell~  265 (269)
T d2java1         233 ---RIPYRYSD----ELNEIITRMLNLKDYHRPSVEEILE  265 (269)
T ss_dssp             ---CCCTTSCH----HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---CCCcccCH----HHHHHHHHHcCCChhHCcCHHHHHh
Confidence               11111222    2334777999999999999999874

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-41  Score=366.71  Aligned_cols=174  Identities=22%  Similarity=0.361  Sum_probs=146.8

Q ss_pred             hCCCCCceeecccCceeEEecccc-----------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT-----------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~-----------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .++|+..+.||+|+||+||+|++.                 ...+++.+|+.++++++|||||+++++|.+.     ..+
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~-----~~~   79 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-----GEI   79 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECS-----SEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----CEE
Confidence            568999999999999999999864                 1245789999999999999999999999643     358


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+|||||++|+|.+++++..        .++.|++.||+|||+.+  +|+||||||+|||+++++.+||+|||+|+.+..
T Consensus        80 ~iVmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~--~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~  157 (322)
T d1s9ja_          80 SICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID  157 (322)
T ss_dssp             EEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHH
T ss_pred             EEEEEcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEccccCHHHeeECCCCCEEEeeCCCccccCC
Confidence            99999999999999986432        34679999999999732  799999999999999999999999999997642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .        .....+||+.|||||++.+..|+.++||||+||+++++.++..++
T Consensus       158 ~--------~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf  203 (322)
T d1s9ja_         158 S--------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPI  203 (322)
T ss_dssp             H--------TC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCS
T ss_pred             C--------ccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCC
Confidence            2        123468999999999999999999999999999888876655444

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-41  Score=357.00  Aligned_cols=226  Identities=23%  Similarity=0.302  Sum_probs=169.4

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++..                   ..+.+.+|++++++++|||||++++++.+     ...
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~   82 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----DEK   82 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEEC-----SSE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEE-----CCE
Confidence            579999999999999999997651                   23568899999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+|||||++|+|.+++....        .++.|++.||+|||+.   +||||||||+|||+++++.+||+|||+|+.+.
T Consensus        83 ~~ivmEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~  159 (288)
T d1uu3a_          83 LYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLS  159 (288)
T ss_dssp             EEEEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             EEEEEEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccc---cEEcCcCCccccccCCCceEEecccccceecc
Confidence            899999999999999886432        3467999999999998   99999999999999999999999999998764


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ...    ........+||+.|||||++.+..++.++||||+||++|++..+..++.....  .++... +   .......
T Consensus       160 ~~~----~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~~~~~-i---~~~~~~~  229 (288)
T d1uu3a_         160 PES----KQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE--YLIFQK-I---IKLEYDF  229 (288)
T ss_dssp             --------------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH-H---HTTCCCC
T ss_pred             cCC----cccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCH--HHHHHH-H---HcCCCCC
Confidence            221    11123345899999999999999999999999999887776655544432211  111111 1   1111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .    +.+.+-+++++.+||+.||++|||++|+.+
T Consensus       230 p----~~~s~~~~~li~~~L~~dP~~R~t~~e~~~  260 (288)
T d1uu3a_         230 P----EKFFPKARDLVEKLLVLDATKRLGCEEMEG  260 (288)
T ss_dssp             C----TTCCHHHHHHHHTTSCSSGGGSTTSGGGTC
T ss_pred             C----ccCCHHHHHHHHHHccCCHhHCcCHHHHcC
Confidence            1    112223344777999999999999999753

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-41  Score=362.13  Aligned_cols=228  Identities=24%  Similarity=0.271  Sum_probs=157.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .+.|+..+.||+|+||+||+|++..                 ..+.+.+|++++++++|||||++++++.+     ....
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~-----~~~~   82 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYES-----GGHL   82 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEEC-----SSEE
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEE
Confidence            4578999999999999999997651                 23457789999999999999999999854     3458


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec---CCCceEEeccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARF  791 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~---~~~~~ki~DfGla~~  791 (929)
                      |+|||||++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||+.   +++.+||+|||+|+.
T Consensus        83 ~lvmE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~  159 (307)
T d1a06a_          83 YLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDL---GIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM  159 (307)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCC-----
T ss_pred             EEEEeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhc---eeeeEEecccceeecccCCCceEEEeccceeEE
Confidence            99999999999999986433        3467999999999998   999999999999994   578999999999986


Q ss_pred             cccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          792 LLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       792 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                      ....       ......+||+.|||||++.+..|+.++||||+|+++|++..+..++.....  .+........    ..
T Consensus       160 ~~~~-------~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~~~~~i~~~----~~  226 (307)
T d1a06a_         160 EDPG-------SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDEND--AKLFEQILKA----EY  226 (307)
T ss_dssp             --------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHTT----CC
T ss_pred             ccCC-------CeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHhcc----CC
Confidence            5321       122345799999999999999999999999999877776555444322211  1111111111    11


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .........+++-+++++.+||+.||++|||++|+++
T Consensus       227 ~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  263 (307)
T d1a06a_         227 EFDSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQ  263 (307)
T ss_dssp             CCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             CCCCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhc
Confidence            1111111112223344777999999999999999986

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-40  Score=355.28  Aligned_cols=237  Identities=25%  Similarity=0.304  Sum_probs=172.4

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++|+..+.||+|+||+||+|++.              ...+.|.+|+.++++++|||||+++|+|.+.      ..++|
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~------~~~lv   89 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEE------PIYIV   89 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTTBCCEEEEECSS------SCEEE
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccCCHHHHHHHHHHHHhcccCCEeEEEEEEecC------CeEEE
Confidence            357889999999999999999875              2357899999999999999999999998532      26999


Q ss_pred             EEecCCCCcccccccc----------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGE----------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~----------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      |||+++|+|.+++...          ..++.|||.||+|||+.   +|+||||||+|||+|+++.+||+|||+|+.....
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~  166 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDN  166 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-----
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhh---heecccccceEEEECCCCcEEEcccchhhhccCC
Confidence            9999999999887632          23478999999999998   9999999999999999999999999999876422


Q ss_pred             cCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTI  875 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  875 (929)
                      .     ........||+.|||||++.++.++.++||||+|+++||+....-++.... ...++++. +..    ..  +.
T Consensus       167 ~-----~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-~~~~~~~~-i~~----~~--~~  233 (285)
T d1fmka3         167 E-----YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-VNREVLDQ-VER----GY--RM  233 (285)
T ss_dssp             --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-CHHHHHHH-HHT----TC--CC
T ss_pred             C-----ceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-CHHHHHHH-HHh----cC--CC
Confidence            1     122334579999999999999999999999999987777544221111111 11111111 111    10  01


Q ss_pred             hhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHh
Q 002376          876 QLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILL  918 (929)
Q Consensus       876 ~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~  918 (929)
                      +.+..+++.+++++.+||+.||++||+|++|+++|++......
T Consensus       234 ~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         234 PCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             CCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence            1111222333448889999999999999999999998665544

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=358.19  Aligned_cols=252  Identities=21%  Similarity=0.248  Sum_probs=176.9

Q ss_pred             CCCCceeecccCceeEEeccccC-----------cHHHHHHHHH--HHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-----------SWKSFIAECE--TLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~--~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      +|...+.||+|+||.||+|++.+           ..+++.+|.+  .+.+++|||||+++|+|.+.+ .....+|+||||
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~-~~~~~~~lv~Ey   82 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVMLRHENILGFIAADNKDN-GTWTQLWLVSDY   82 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEEEEEEC
T ss_pred             EEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCC-CcceEEEEEEec
Confidence            56678899999999999998762           2344555555  455789999999999998654 233468999999


Q ss_pred             cCCCCccccccccc-------cccccHHHHHHHhhhC-----CCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          729 LSNGSLGDWIHGER-------KNELDITSALDYLHND-----CEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~-----~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      |++|+|.+++++..       .++.|+|.||+|+|+.     ..++||||||||+|||+++++.+||+|||+++......
T Consensus        83 ~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~  162 (303)
T d1vjya_          83 HEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSAT  162 (303)
T ss_dssp             CTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTT
T ss_pred             ccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCC
Confidence            99999999997433       3478999999999974     13599999999999999999999999999999764321


Q ss_pred             CCCCCccccceeccccccccccccCCCC------CCCCCCCCCCcCCCCCcchhHHhhhcCCc---hhhhcc--C---hH
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGER------PSTAGDVPTSESFAGEFNIVKWVESNLPE---NVLQVL--D---PE  862 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~DV~s~g~~~~~~~~~~~~~~~~~~---~~~~~~--~---~~  862 (929)
                      ..  ........+||++|||||++.+..      ++.++||||+|+++||+.....++...+.   ...+..  +   ..
T Consensus       163 ~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (303)
T d1vjya_         163 DT--IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE  240 (303)
T ss_dssp             TE--ECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHH
T ss_pred             cc--eeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHH
Confidence            11  111233468999999999987653      67889999999988887654333322111   111110  0   11


Q ss_pred             HHHhhccc-----chhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          863 LRQLMTSN-----ESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       863 l~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      +.......     ........++...+.+ ++.+||+.||++||||.||+++|+++.++-
T Consensus       241 ~~~~~~~~~~~p~~~~~~~~~~~~~~l~~-li~~cl~~dp~~Rps~~ei~~~L~~i~~~~  299 (303)
T d1vjya_         241 MRKVVCEQKLRPNIPNRWQSCEALRVMAK-IMRECWYANGAARLTALRIKKTLSQLSQQE  299 (303)
T ss_dssp             HHHHHTTSCCCCCCCGGGGGCHHHHHHHH-HHHTTCCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCCcccCChHHHHHHHH-HHHHHcccCHhHCcCHHHHHHHHHHHHHhc
Confidence            11111110     0111112233334444 899999999999999999999999988653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-40  Score=355.48  Aligned_cols=244  Identities=20%  Similarity=0.311  Sum_probs=172.6

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeee
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITS  710 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~  710 (929)
                      ++++...++|+..+.||+|+||+||+|++.                      ...+.+.+|...+.++ +|||||+++++
T Consensus         6 ~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~   85 (299)
T d1ywna1           6 SKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGA   85 (299)
T ss_dssp             HHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEE
T ss_pred             ccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeee
Confidence            444444568999999999999999998642                      1235677888888877 68999999999


Q ss_pred             cccCCCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEec
Q 002376          711 CSSLDSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHS  766 (929)
Q Consensus       711 ~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHr  766 (929)
                      +.+.+    ...++|||||++|+|.++++..+                        .++.||++||+|||+.   +||||
T Consensus        86 ~~~~~----~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHr  158 (299)
T d1ywna1          86 CTKPG----GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  158 (299)
T ss_dssp             ECSTT----SCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eccCC----CeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCC
Confidence            86533    24799999999999999986322                        2356899999999998   99999


Q ss_pred             CCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhH-
Q 002376          767 DLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVK-  845 (929)
Q Consensus       767 Dlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~-  845 (929)
                      ||||+|||+++++.+||+|||+|+......    .........||+.|||||++.++.++.++||||+|+++||+.... 
T Consensus       159 DlKp~NILl~~~~~~Kl~DFGla~~~~~~~----~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~  234 (299)
T d1ywna1         159 DLAARNILLSEKNVVKICDFGLARDIYKDP----DYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGA  234 (299)
T ss_dssp             CCCGGGEEECGGGCEEECC------CCSCT----TSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSC
T ss_pred             cCCccceeECCCCcEEEccCcchhhccccc----cccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCC
Confidence            999999999999999999999998653221    112234467999999999999999999999999998887754321 


Q ss_pred             HhhhcCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          846 WVESNLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       846 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .++....  .    +..+........  +...++..++-+.+++.+||+.||++||||+||++.|+++.+.
T Consensus       235 ~p~~~~~--~----~~~~~~~~~~~~--~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~L~~ilq~  297 (299)
T d1ywna1         235 SPYPGVK--I----DEEFCRRLKEGT--RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA  297 (299)
T ss_dssp             CSSTTCC--C----SHHHHHHHHHTC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCC--H----HHHHHHHHhcCC--CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence            1121111  1    111111111111  1111111222233488899999999999999999999998764

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=360.99  Aligned_cols=234  Identities=19%  Similarity=0.260  Sum_probs=174.0

Q ss_pred             CCCCCceeecccCceeEEecccc---------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT---------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~---------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      ++|+..++||+|+||+||+|++.                     ...++|.+|++++++++|||||+++|+|.+.+    
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~----   84 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST----   84 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSS----
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCC----
Confidence            46899999999999999998653                     23467999999999999999999999996532    


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                        .++||||+.+|+|.+++....         .++.|||.||+|||+.   +||||||||+|||++.++.+||+|||+|+
T Consensus        85 --~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~---~iiHrDlKp~NIll~~~~~~kl~DFGla~  159 (317)
T d1xkka_          85 --VQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAK  159 (317)
T ss_dssp             --EEEEEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCCSHHH
T ss_pred             --eeEEEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHc---CcccCcchhhcceeCCCCCeEeeccccce
Confidence              689999999999988776322         3467999999999998   99999999999999999999999999999


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      ......    .........||+.|||||++.++.++.++||||+|+++||+.+ ...++...+.  .++. ..+..    
T Consensus       160 ~~~~~~----~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~--~~~~-~~i~~----  228 (317)
T d1xkka_         160 LLGAEE----KEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA--SEIS-SILEK----  228 (317)
T ss_dssp             HTTTTC----C--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCG--GGHH-HHHHH----
T ss_pred             eccccc----ccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCH--HHHH-HHHHc----
Confidence            764321    1122234578999999999999999999999999988887644 3333332221  1111 11111    


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..  +...++..+.-+.+++.+||+.||++||||+|+++.|+.+...
T Consensus       229 ~~--~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l~~~~~~  273 (317)
T d1xkka_         229 GE--RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD  273 (317)
T ss_dssp             TC--CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             CC--CCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHHHHHHhC
Confidence            11  0111111122233478899999999999999999999988654

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.4e-40  Score=357.49  Aligned_cols=239  Identities=22%  Similarity=0.317  Sum_probs=178.6

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeec
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSC  711 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~  711 (929)
                      .+++...++|+..+.||+|+||+||+|++.+                      ..++|.+|++++++++||||++++++|
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            3455567789999999999999999997531                      245799999999999999999999999


Q ss_pred             ccCCCCCcceEEEEEEecCCCCcccccccc--------------------------------ccccccHHHHHHHhhhCC
Q 002376          712 SSLDSKNMEFLALVYEFLSNGSLGDWIHGE--------------------------------RKNELDITSALDYLHNDC  759 (929)
Q Consensus       712 ~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~--------------------------------~~~~~~ia~aL~yLH~~~  759 (929)
                      ...+     ..++||||+++|+|.++++..                                ..++.|+|.||+|||+. 
T Consensus        86 ~~~~-----~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~-  159 (301)
T d1lufa_          86 AVGK-----PMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER-  159 (301)
T ss_dssp             CSSS-----SCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             ccCC-----ceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC-
Confidence            6544     379999999999999988631                                12367899999999998 


Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCC
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAG  839 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~  839 (929)
                        +||||||||+|||+|.++.+||+|||+|+.+.....    ........||+.|||||++.+..++.++||||+|+++|
T Consensus       160 --~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~----~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~  233 (301)
T d1lufa_         160 --KFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADY----YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLW  233 (301)
T ss_dssp             --TCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC----BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             --CeEeeEEcccceEECCCCcEEEccchhheeccCCcc----ccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHH
Confidence              999999999999999999999999999987643211    11223457899999999999999999999999998888


Q ss_pred             CcchhHH-hhhcCCchhhhccChHHHHhhcccchhhhhhh-HHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhH
Q 002376          840 EFNIVKW-VESNLPENVLQVLDPELRQLMTSNESQTIQLH-DCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQ  914 (929)
Q Consensus       840 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~  914 (929)
                      |+..... ++....  ..++.. .+..    ..  ....+ .+..++. +|+.+||+.||++||||.||+++|+++.
T Consensus       234 ell~~~~~p~~~~~--~~e~~~-~v~~----~~--~~~~p~~~~~~~~-~li~~cl~~~P~~RPt~~ev~~~L~~i~  300 (301)
T d1lufa_         234 EIFSYGLQPYYGMA--HEEVIY-YVRD----GN--ILACPENCPLELY-NLMRLCWSKLPADRPSFCSIHRILQRMC  300 (301)
T ss_dssp             HHHTTTCCTTTTSC--HHHHHH-HHHT----TC--CCCCCTTCCHHHH-HHHHHHTCSSGGGSCCHHHHHHHHHHTT
T ss_pred             HHHccCCCCCCCCC--HHHHHH-HHHc----CC--CCCCCccchHHHH-HHHHHHcCCChhHCcCHHHHHHHHHHhc
Confidence            7643321 111111  111111 1111    11  01111 1122333 3888999999999999999999999875

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-40  Score=350.74  Aligned_cols=230  Identities=25%  Similarity=0.325  Sum_probs=169.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEEEe
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVYEF  728 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~e~  728 (929)
                      ++|+..+.||+|+||.||+|++++            ..++|.+|++++++++|||||+++|+|.+..    ..+|+||||
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~----~~~~lv~ey   82 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEK----GGLYIVTEY   82 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC--HHHHHTHHHHTTCCCTTBCCEEEEECCC------CCEEEECC
T ss_pred             HHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecC----CcEEEEEec
Confidence            467788999999999999998763            3578999999999999999999999986532    237999999


Q ss_pred             cCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccccCC
Q 002376          729 LSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERVDN  798 (929)
Q Consensus       729 ~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~~~  798 (929)
                      +++|+|.++++..+          .++.|||.||+|||+.   +|+||||||+||+++.++.+|++|||+++....    
T Consensus        83 ~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~----  155 (262)
T d1byga_          83 MAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS----  155 (262)
T ss_dssp             CTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC----------
T ss_pred             cCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccC---ceeccccchHhheecCCCCEeecccccceecCC----
Confidence            99999999986432          3478999999999998   999999999999999999999999999986532    


Q ss_pred             CCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcccchhhhhh
Q 002376          799 QSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTSNESQTIQL  877 (929)
Q Consensus       799 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  877 (929)
                           ......+|+.|||||++.++.++.++||||+|+++||+.. ...++...+.  .++     .......  .+++.
T Consensus       156 -----~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~--~~~-----~~~i~~~--~~~~~  221 (262)
T d1byga_         156 -----TQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL--KDV-----VPRVEKG--YKMDA  221 (262)
T ss_dssp             -----------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCG--GGH-----HHHHTTT--CCCCC
T ss_pred             -----CCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCH--HHH-----HHHHHcC--CCCCC
Confidence                 1223468999999999999999999999999988877643 2333222221  111     1111110  01111


Q ss_pred             hHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          878 HDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       878 ~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      ++....-+++++.+||+.||++||||+|++++|++++.
T Consensus       222 ~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~L~~i~~  259 (262)
T d1byga_         222 PDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKT  259 (262)
T ss_dssp             CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CccCCHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHh
Confidence            11122233347779999999999999999999999864

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=5.7e-40  Score=360.31  Aligned_cols=228  Identities=21%  Similarity=0.241  Sum_probs=172.0

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||+||+|++..                ..+.+.+|++++++++|||||++++++.+     ....|
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~~~   99 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNEMV   99 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEE-----TTEEE
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEE
Confidence            3589999999999999999997651                24578899999999999999999999854     34589


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec--CCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD--EEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~--~~~~~ki~DfGla~~~  792 (929)
                      +|||||++|+|.+++....         .++.||+.||+|||+.   +||||||||+|||++  .++.+||+|||+|+.+
T Consensus       100 ivmE~~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~  176 (350)
T d1koaa2         100 MIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHL  176 (350)
T ss_dssp             EEECCCCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTSCCEEECCCTTCEEC
T ss_pred             EEEEcCCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhc---CCeeeeechhHeeeccCCCCeEEEeecchheec
Confidence            9999999999999885322         3467999999999998   999999999999995  4678999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       .......||+.|||||++.+..++.++||||+||++|++..+..++.....  .+.+......    ...
T Consensus       177 ~~~-------~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~--~~~~~~i~~~----~~~  243 (350)
T d1koaa2         177 DPK-------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND--DETLRNVKSC----DWN  243 (350)
T ss_dssp             CTT-------SCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHHHHHT----CCC
T ss_pred             ccc-------cccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCH--HHHHHHHHhC----CCC
Confidence            321       223456899999999999999999999999999887776655544432211  1111111111    111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........+++-+++++.+||+.||++|||++|+++
T Consensus       244 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~  279 (350)
T d1koaa2         244 MDDSAFSGISEDGKDFIRKLLLADPNTRMTIHQALE  279 (350)
T ss_dssp             SCCGGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             CCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111111112223344777999999999999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-39  Score=349.87  Aligned_cols=227  Identities=20%  Similarity=0.229  Sum_probs=171.5

Q ss_pred             CCCCCceeecccCceeEEeccccC----------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG----------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~----------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||+||+|++..                      ..+.|.+|++++++++|||||++++++.+     
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----   84 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN-----   84 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----
Confidence            579999999999999999987641                      24679999999999999999999999954     


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC----ceEEecc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM----TAKVGDF  786 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~----~~ki~Df  786 (929)
                      ....|+|||||++|+|.+++....        .++.|++.||+|||+.   +|+||||||+|||++.++    .+|++||
T Consensus        85 ~~~~~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~---~ivHrDiKp~Nill~~~~~~~~~vkl~Df  161 (293)
T d1jksa_          85 KTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDF  161 (293)
T ss_dssp             SSEEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSSSSCCEEECCC
T ss_pred             CCEEEEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhc---ceeecccccceEEEecCCCcccceEecch
Confidence            345899999999999999986432        3467999999999998   999999999999998776    4999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHh
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQL  866 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  866 (929)
                      |+|+.....       .......||+.|||||++.+..++.++||||+|+++|++.....++.....  .+.+.. +.. 
T Consensus       162 G~a~~~~~~-------~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~--~~~~~~-i~~-  230 (293)
T d1jksa_         162 GLAHKIDFG-------NEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK--QETLAN-VSA-  230 (293)
T ss_dssp             TTCEECTTS-------CBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHHHH-HHT-
T ss_pred             hhhhhcCCC-------ccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCH--HHHHHH-HHh-
Confidence            999876321       122345799999999999999999999999999887776655544432221  111111 111 


Q ss_pred             hcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          867 MTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       867 ~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                        ............++..+++++.+||+.||++|||++|+++
T Consensus       231 --~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  270 (293)
T d1jksa_         231 --VNYEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ  270 (293)
T ss_dssp             --TCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             --cCCCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence              1111111111112223334777999999999999999975

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3e-40  Score=356.34  Aligned_cols=221  Identities=25%  Similarity=0.278  Sum_probs=165.5

Q ss_pred             CCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      .|+..+.||+|+||+||+|++..                   ..+.|.+|++++++++|||||++++++.+.     ...
T Consensus        16 ~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~-----~~~   90 (309)
T d1u5ra_          16 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-----HTA   90 (309)
T ss_dssp             HEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEE
T ss_pred             hcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEEC-----CEE
Confidence            48889999999999999997641                   134688999999999999999999998653     348


Q ss_pred             EEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      |+|||||++|++..++...        +.++.||+.||+|||+.   +||||||||+|||+++++.+||+|||+|+....
T Consensus        91 ~iv~E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~  167 (309)
T d1u5ra_          91 WLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP  167 (309)
T ss_dssp             EEEEECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred             EEEEEecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEECCCCCEEEeecccccccCC
Confidence            9999999999987665432        23478999999999998   999999999999999999999999999986421


Q ss_pred             ccCCCCCccccceeccccccccccccCC---CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccc
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLG---ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNE  871 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  871 (929)
                                ....+||+.|||||++.+   +.|+.++||||+|+++|++..+..++.....  .+.+........+.. 
T Consensus       168 ----------~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~--~~~~~~i~~~~~~~~-  234 (309)
T d1u5ra_         168 ----------ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNA--MSALYHIAQNESPAL-  234 (309)
T ss_dssp             ----------BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH--HHHHHHHHHSCCCCC-
T ss_pred             ----------CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCH--HHHHHHHHhCCCCCC-
Confidence                      233579999999999864   4589999999999887776554444322211  111111111100000 


Q ss_pred             hhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          872 SQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       872 ~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                       ..    ...++.+++++.+||+.||++|||++|+++
T Consensus       235 -~~----~~~s~~~~~li~~~L~~dP~~Rpt~~ell~  266 (309)
T d1u5ra_         235 -QS----GHWSEYFRNFVDSCLQKIPQDRPTSEVLLK  266 (309)
T ss_dssp             -SC----TTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred             -CC----CCCCHHHHHHHHHHCcCChhHCcCHHHHHh
Confidence             01    112223344777999999999999999875

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-40  Score=351.79  Aligned_cols=233  Identities=23%  Similarity=0.262  Sum_probs=167.4

Q ss_pred             CCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..+.||+|+||+||+|++.                      ...++|.+|++++++++|||||+++|+|.+.    
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~----   83 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTP----   83 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeec----
Confidence            46888999999999999998642                      1135789999999999999999999999542    


Q ss_pred             cceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                        ..++||||+++|++.+++....         .++.|+|.||+|||+.   +|+||||||+||+++.++.+||+|||++
T Consensus        84 --~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDikp~NIll~~~~~vkl~DfGl~  158 (273)
T d1u46a_          84 --PMKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLM  158 (273)
T ss_dssp             --SCEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTC
T ss_pred             --chheeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhC---CEeeeeecHHHhccccccceeeccchhh
Confidence              2689999999999998775322         3467999999999998   9999999999999999999999999999


Q ss_pred             cccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhc
Q 002376          790 RFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMT  868 (929)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~  868 (929)
                      +.+.....   .........||+.|||||++.+..++.++||||+|+++||+.+ +..++.....  .+++    .....
T Consensus       159 ~~~~~~~~---~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~--~~~~----~~i~~  229 (273)
T d1u46a_         159 RALPQNDD---HYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG--SQIL----HKIDK  229 (273)
T ss_dssp             EECCC-CC---EEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH--HHHH----HHHHT
T ss_pred             hhcccCCC---cceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCH--HHHH----HHHHh
Confidence            97643211   1122334568899999999999999999999999988887654 3433322221  1111    11111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhh
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSS  913 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~  913 (929)
                      ..  .+.+.++.++..+++++.+||+.||++||||+||++.|++.
T Consensus       230 ~~--~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~~~L~~~  272 (273)
T d1u46a_         230 EG--ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEA  272 (273)
T ss_dssp             SC--CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHH
T ss_pred             CC--CCCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence            11  01111111222333477799999999999999999999875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-40  Score=357.17  Aligned_cols=232  Identities=23%  Similarity=0.294  Sum_probs=173.7

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..++||+|+||+||+|++.                   ...++|.+|+++++++ +|||||+++|+|.+.     .
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~-----~   84 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----G   84 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-----T
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecC-----C
Confidence            56788899999999999998764                   1245799999999998 799999999999653     3


Q ss_pred             eEEEEEEecCCCCcccccccc------------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec
Q 002376          721 FLALVYEFLSNGSLGDWIHGE------------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD  776 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~------------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~  776 (929)
                      ..++||||+++|+|.++++..                        ..++.|||.||+|+|+.   +|+||||||+|||++
T Consensus        85 ~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHrDlkp~NIL~~  161 (309)
T d1fvra_          85 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG  161 (309)
T ss_dssp             EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred             eeEEEEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---CccccccccceEEEc
Confidence            489999999999999998632                        12367999999999998   999999999999999


Q ss_pred             CCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHH-hhhcCCchh
Q 002376          777 EEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKW-VESNLPENV  855 (929)
Q Consensus       777 ~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~-~~~~~~~~~  855 (929)
                      .++.+||+|||+|+.....       .......||..|+|||.+.++.++.++||||+|+++|++..... ++.....  
T Consensus       162 ~~~~~kl~DfG~a~~~~~~-------~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~--  232 (309)
T d1fvra_         162 ENYVAKIADFGLSRGQEVY-------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTC--  232 (309)
T ss_dssp             GGGCEEECCTTCEESSCEE-------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCH--
T ss_pred             CCCceEEcccccccccccc-------ccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCH--
Confidence            9999999999999865322       11233468999999999999999999999999988877644322 1211111  


Q ss_pred             hhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          856 LQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       856 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      .     .+...+....  +++.+..+++.+++++.+||+.||++||||+||++.|+++.+.
T Consensus       233 ~-----~~~~~i~~~~--~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~L~~i~~~  286 (309)
T d1fvra_         233 A-----ELYEKLPQGY--RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEE  286 (309)
T ss_dssp             H-----HHHHHGGGTC--CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred             H-----HHHHHHHhcC--CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence            1     1111111110  1111112223334477799999999999999999999998764

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-39  Score=353.90  Aligned_cols=224  Identities=25%  Similarity=0.305  Sum_probs=171.4

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|+..                   ...+.+.+|+.+|++++|||||++++++.+     ...
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-----~~~   79 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----HDR   79 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----SSE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecc-----ccc
Confidence            57999999999999999999865                   124568899999999999999999999954     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      +|+|||||++|+|.+++...+        .++.|++.||+|||+.   +||||||||+|||++++|.+||+|||+|+...
T Consensus        80 ~~iv~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~  156 (337)
T d1o6la_          80 LCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGI  156 (337)
T ss_dssp             EEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSC
T ss_pred             cccceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhc---CccccccCHHHeEecCCCCEEEeecccccccc
Confidence            899999999999999887433        3467999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..      .......+||+.|||||++.+..|+.++||||+||++|++..+..++....  ..++.......    ... 
T Consensus       157 ~~------~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~--~~~~~~~i~~~----~~~-  223 (337)
T d1o6la_         157 SD------GATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD--HERLFELILME----EIR-  223 (337)
T ss_dssp             CT------TCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHHHHHC----CCC-
T ss_pred             cC------CcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcC--HHHHHHHHhcC----CCC-
Confidence            21      122345689999999999999999999999999988777655543332211  11111111111    111 


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                         .+..++.-+++++.+|++.||++||+     +.|+++
T Consensus       224 ---~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~  260 (337)
T d1o6la_         224 ---FPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME  260 (337)
T ss_dssp             ---CCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred             ---CCccCCHHHHHHHHhhccCCchhhcccccccHHHHHc
Confidence               11122233345777999999999995     777765

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=1.3e-39  Score=357.66  Aligned_cols=228  Identities=21%  Similarity=0.222  Sum_probs=171.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      .++|+..+.||+|+||+||+|++..                ..+.+.+|++++++++|||||++++++.+     ...+|
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~~  102 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEMV  102 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEE
Confidence            3579999999999999999998651                24568899999999999999999999854     34589


Q ss_pred             EEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeec--CCCceEEecccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLD--EEMTAKVGDFGLARFL  792 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~--~~~~~ki~DfGla~~~  792 (929)
                      +|||||++|+|.+++....         .++.||+.||+|||+.   +||||||||+|||++  .++.+||+|||+|+.+
T Consensus       103 ivmE~~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~---~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~  179 (352)
T d1koba_         103 LILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKL  179 (352)
T ss_dssp             EEEECCCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEEC
T ss_pred             EEEEcCCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccccccccccccCCCeEEEeecccceec
Confidence            9999999999988765322         3467999999999998   999999999999998  6789999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...       .......||+.|||||++.+..++.++||||+||++|++.++..++.....  .+.+......    ...
T Consensus       180 ~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~~~~i~~~----~~~  246 (352)
T d1koba_         180 NPD-------EIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD--LETLQNVKRC----DWE  246 (352)
T ss_dssp             CTT-------SCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH--HHHHHHHHHC----CCC
T ss_pred             CCC-------CceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC----CCC
Confidence            321       223456899999999999999999999999999888776655444432221  1111111111    111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ........++.-+++++.+||+.||++|||++|+++
T Consensus       247 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  282 (352)
T d1koba_         247 FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE  282 (352)
T ss_dssp             CCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred             CCcccccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            111111112223334777999999999999999976

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-39  Score=347.37  Aligned_cols=238  Identities=21%  Similarity=0.301  Sum_probs=175.7

Q ss_pred             ceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEE
Q 002376          666 ENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       666 ~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      .++||+|+||+||+|++.                    ...++|.+|++++++++|||||+++|+|.+.+    ...++|
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~----~~~~lv  107 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSE----GSPLVV  107 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETT----TEEEEE
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecC----CceEEE
Confidence            478999999999998753                    12467999999999999999999999986533    348999


Q ss_pred             EEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          726 YEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      ||||++|+|.++++...         .++.|+|.||.|+|+.   +|+||||||+|||+++++.+||+|||+++.+....
T Consensus       108 ~E~~~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~---~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~  184 (311)
T d1r0pa_         108 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE  184 (311)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTT
T ss_pred             EEEeecCchhhhhccccccchHHHHHHHHHHHHHhhhhhccc---CcccCCccHHhEeECCCCCEEEecccchhhccccc
Confidence            99999999999886332         3467999999999998   99999999999999999999999999999764322


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchhhhh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQTIQ  876 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  876 (929)
                      ...  ........||+.|+|||++.++.++.++||||+|++++|+.....++..... ..++. ..+..    ..  +..
T Consensus       185 ~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~-~~~~~-~~i~~----g~--~~~  254 (311)
T d1r0pa_         185 FDS--VHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN-TFDIT-VYLLQ----GR--RLL  254 (311)
T ss_dssp             CCC--TTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-------CH-HHHHT----TC--CCC
T ss_pred             ccc--ceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCC-HHHHH-HHHHc----CC--CCC
Confidence            111  1222345799999999999999999999999999877775443332211110 11111 11111    00  000


Q ss_pred             hhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHHhhc
Q 002376          877 LHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEILLKQ  920 (929)
Q Consensus       877 ~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~~~~  920 (929)
                      .++...+-+.+++.+||+.||++||+|.||++.|+++.+.+...
T Consensus       255 ~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~L~~i~~~~~~~  298 (311)
T d1r0pa_         255 QPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE  298 (311)
T ss_dssp             CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSC
T ss_pred             CcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHhhhhh
Confidence            11111122334888999999999999999999999998876544

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-39  Score=344.02  Aligned_cols=234  Identities=22%  Similarity=0.284  Sum_probs=166.1

Q ss_pred             hCCCCCceeecccCceeEEecccc--------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT--------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNM  719 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~--------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~  719 (929)
                      .++|+..+.||+|+||+||+|++.                    ...+.|.+|++++++++|||||+++|+|.+      
T Consensus         6 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~------   79 (273)
T d1mp8a_           6 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE------   79 (273)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS------
T ss_pred             HHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------
Confidence            357888999999999999998753                    123578999999999999999999999843      


Q ss_pred             ceEEEEEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          720 EFLALVYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       720 ~~~~lV~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ...|+||||+++|++.+++....         .++.||++||+|||+.   +|+||||||+||++++++.+||+|||+|+
T Consensus        80 ~~~~iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~iiHrDlKp~NIll~~~~~~Kl~DfG~a~  156 (273)
T d1mp8a_          80 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSR  156 (273)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-----
T ss_pred             CeEEEEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhccc---CeeccccchhheeecCCCcEEEccchhhe
Confidence            23799999999999998765322         3367999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhhcCCchhhhccChHHHHhhcc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVESNLPENVLQVLDPELRQLMTS  869 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~  869 (929)
                      .+...     .........||+.|||||++.+..++.++||||+|+++||+.+ ...++.....  .++.. .+..    
T Consensus       157 ~~~~~-----~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~--~~~~~-~i~~----  224 (273)
T d1mp8a_         157 YMEDS-----TYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN--NDVIG-RIEN----  224 (273)
T ss_dssp             -------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG--GGHHH-HHHT----
T ss_pred             eccCC-----cceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCH--HHHHH-HHHc----
Confidence            76322     1112334578999999999999999999999999988877543 2322222221  11111 1111    


Q ss_pred             cchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          870 NESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       870 ~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..  +.+.+..++.-+++++.+||+.||++||||+||++.|+++.++
T Consensus       225 ~~--~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~L~~i~~~  269 (273)
T d1mp8a_         225 GE--RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEE  269 (273)
T ss_dssp             TC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CC--CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence            10  0011111222333477799999999999999999999998765

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.5e-39  Score=344.32  Aligned_cols=242  Identities=21%  Similarity=0.299  Sum_probs=172.9

Q ss_pred             hCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      .++|+..+.||+|+||+||+|++..                   ..+.|.+|++++++++|||||++++++...+ ....
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~-~~~~   84 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP   84 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEC-SSSE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeecc-CCCc
Confidence            4679999999999999999997641                   1346889999999999999999999987644 2344


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+||||+++|+|.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++..+++|||.++..
T Consensus        85 ~~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~  161 (277)
T d1o6ya_          85 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIARAI  161 (277)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTSCEEECCCTTCEEC
T ss_pred             eEEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCccccCcccccCccccceeehhhhhhhh
Confidence            5899999999999998886432        3467999999999998   9999999999999999999999999998765


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      .....   ........+||+.|||||++.+..++.++||||+|+++|++.++..++.....  .+.....+..    ...
T Consensus       162 ~~~~~---~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~--~~~~~~~~~~----~~~  232 (277)
T d1o6ya_         162 ADSGN---SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSP--VSVAYQHVRE----DPI  232 (277)
T ss_dssp             C-------------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH--HHHHHHHHHC----CCC
T ss_pred             ccccc---cccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCH--HHHHHHHHhc----CCC
Confidence            32211   11223456899999999999999999999999999887776655444332211  1111111111    111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCC-CHHHHHHHHHhhH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRI-GIREALRRLKSSQ  914 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-s~~ev~~~L~~~~  914 (929)
                      ......+.+++-+++++.+|++.||++|| |++|+.+.|.+++
T Consensus       233 ~~~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l~~~l~r~~  275 (277)
T d1o6ya_         233 PPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRVH  275 (277)
T ss_dssp             CGGGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHH
T ss_pred             CCchhccCCCHHHHHHHHHHccCCHhHCHhHHHHHHHHHHHHh
Confidence            11111111222333477799999999999 8999999988775

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.1e-39  Score=347.00  Aligned_cols=221  Identities=19%  Similarity=0.258  Sum_probs=170.4

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++.                   ...+.+.+|+.++++++|||||++++++.+     ...
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~-----~~~   78 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----AQQ   78 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----SSE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEee-----CCe
Confidence            57889999999999999999865                   124568899999999999999999999854     345


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .|+|||||++|++.+++....        .++.||+.||+|||+.   +|+||||||+|||++.++.+||+|||+|+...
T Consensus        79 ~~ivmE~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~  155 (316)
T d1fota_          79 IFMIMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVP  155 (316)
T ss_dssp             EEEEECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECS
T ss_pred             eeeEeeecCCccccccccccccccccHHHHHHHHHHHhhhhhccC---cEEccccCchheeEcCCCCEEEecCccceEec
Confidence            899999999999998876432        3467999999999998   99999999999999999999999999998753


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .         .....+||+.|||||++.+..|+.++||||+|+++|++.++..++.....  .++......    .....
T Consensus       156 ~---------~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~--~~~~~~i~~----~~~~~  220 (316)
T d1fota_         156 D---------VTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT--MKTYEKILN----AELRF  220 (316)
T ss_dssp             S---------CBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHH----CCCCC
T ss_pred             c---------ccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCH--HHHHHHHHc----CCCCC
Confidence            2         12346899999999999999999999999999887776655554432221  111111111    11111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      ....++.    +++++.+|++.||++||     |++|+++
T Consensus       221 p~~~s~~----~~~li~~~L~~dp~~R~~~~r~t~~~il~  256 (316)
T d1fota_         221 PPFFNED----VKDLLSRLITRDLSQRLGNLQNGTEDVKN  256 (316)
T ss_dssp             CTTSCHH----HHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred             CCCCCHH----HHHHHHHHhhhCHHhccccchhhHHHHHc
Confidence            1112222    33467799999999996     8889875

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=352.78  Aligned_cols=237  Identities=21%  Similarity=0.261  Sum_probs=177.4

Q ss_pred             HhhCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHccCCccccceeeecccCC
Q 002376          658 RATGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLD  715 (929)
Q Consensus       658 ~~~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~  715 (929)
                      ...++|...+.||+|+||+||+|.+.                      .....|.+|++++++++|||||+++|+|...+
T Consensus        17 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~   96 (308)
T d1p4oa_          17 VAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   96 (308)
T ss_dssp             CCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSS
T ss_pred             ecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCC
Confidence            33467888899999999999998653                      12346899999999999999999999996543


Q ss_pred             CCCcceEEEEEEecCCCCcccccccc------------------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIHGE------------------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE  777 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~~~------------------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~  777 (929)
                           ..++|||||++|+|.++++..                  ..++.|+|+||.|||+.   +|+||||||+|||+|+
T Consensus        97 -----~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHrDlk~~NiLld~  168 (308)
T d1p4oa_          97 -----PTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAE  168 (308)
T ss_dssp             -----SCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECT
T ss_pred             -----ceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeeceEcCCceeecC
Confidence                 379999999999999988622                  13477999999999998   9999999999999999


Q ss_pred             CCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhH-HhhhcCCchhh
Q 002376          778 EMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVK-WVESNLPENVL  856 (929)
Q Consensus       778 ~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~-~~~~~~~~~~~  856 (929)
                      ++.+||+|||+|+.+.....    ........||+.|||||.+.++.++.++||||+|++++|+.+.. .++....  ..
T Consensus       169 ~~~~Kl~DFGla~~~~~~~~----~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~--~~  242 (308)
T d1p4oa_         169 DFTVKIGDFGMTRDIYETDY----YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS--NE  242 (308)
T ss_dssp             TCCEEECCTTCCCGGGGGGC----EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC--HH
T ss_pred             CceEEEeecccceeccCCcc----eeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC--HH
Confidence            99999999999987643211    12233457899999999999999999999999998877765431 2222111  11


Q ss_pred             hccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHH
Q 002376          857 QVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQE  915 (929)
Q Consensus       857 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~  915 (929)
                      +++.. +..    ..  ..+.++..+..+.+++.+||+.||++||||+||+++|++..+
T Consensus       243 ~~~~~-i~~----~~--~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~  294 (308)
T d1p4oa_         243 QVLRF-VME----GG--LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEME  294 (308)
T ss_dssp             HHHHH-HHT----TC--CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSC
T ss_pred             HHHHH-HHh----CC--CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence            11111 111    00  111111122334448889999999999999999999988644

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-38  Score=344.49  Aligned_cols=237  Identities=18%  Similarity=0.280  Sum_probs=177.0

Q ss_pred             hCCCCCceeecccCceeEEecccc----------------------CcHHHHHHHHHHHHcc-CCccccceeeecccCCC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT----------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~----------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~  716 (929)
                      .++|+..++||+|+||.||+|++.                      ...++|.+|+.+++++ +|||||+++|+|.+.. 
T Consensus        22 ~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~-  100 (311)
T d1t46a_          22 RNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG-  100 (311)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             HHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCC-
Confidence            468888999999999999998642                      1245788999999999 6999999999996543 


Q ss_pred             CCcceEEEEEEecCCCCccccccccc--------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER--------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~--------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                          ..++|||||++|+|.++++..+                          .++.||+.||+|||++   +||||||||
T Consensus       101 ----~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHrDLKp  173 (311)
T d1t46a_         101 ----PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAA  173 (311)
T ss_dssp             ----SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSG
T ss_pred             ----EEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeeccccc
Confidence                3799999999999999986322                          2367999999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh-hh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV-ES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~-~~  849 (929)
                      +||+++.++.+|++|||.++......    ........+||+.|||||++.++.++.++||||+|++++++.....+ +.
T Consensus       174 ~NIl~~~~~~~ki~DfG~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~  249 (311)
T d1t46a_         174 RNILLTHGRITKICDFGLARDIKNDS----NYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYP  249 (311)
T ss_dssp             GGEEEETTTEEEECCCGGGSCTTSCT----TSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             ccccccccCcccccccchheeccCCC----cceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCC
Confidence            99999999999999999998764221    11223446899999999999999999999999999877775432211 11


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..+      .+..+........  +...++..++.+.+++.+||+.||++||||+||+++|+++.++
T Consensus       250 ~~~------~~~~~~~~i~~~~--~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~~L~~~i~~  308 (311)
T d1t46a_         250 GMP------VDSKFYKMIKEGF--RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQISE  308 (311)
T ss_dssp             TCC------SSHHHHHHHHHTC--CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCC------HHHHHHHHHhcCC--CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhhcc
Confidence            111      1111221111110  0111111222334478899999999999999999999987654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-39  Score=346.94  Aligned_cols=236  Identities=20%  Similarity=0.315  Sum_probs=172.1

Q ss_pred             hCCCCCceeecccCceeEEecccc------------------------CcHHHHHHHHHHHHcc-CCccccceeeecccC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERT------------------------GSWKSFIAECETLRNV-RHRNLVKLITSCSSL  714 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~------------------------~~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~  714 (929)
                      .++|...+.||+|+||.||+|+..                        ...+++.+|+..+.++ +|||||+++++|.+.
T Consensus        12 ~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~   91 (299)
T d1fgka_          12 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   91 (299)
T ss_dssp             GGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             HHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccC
Confidence            357888899999999999998642                        1235788899999888 899999999999653


Q ss_pred             CCCCcceEEEEEEecCCCCccccccccc------------------------cccccHHHHHHHhhhCCCCCEEecCCCC
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGER------------------------KNELDITSALDYLHNDCEVPVVHSDLKP  770 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~~------------------------~~~~~ia~aL~yLH~~~~~~iiHrDlk~  770 (929)
                      +     ..++|||||++|+|.++++..+                        .++.|+|.||+|||+.   +||||||||
T Consensus        92 ~-----~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHrDiKp  163 (299)
T d1fgka_          92 G-----PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA  163 (299)
T ss_dssp             S-----SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSG
T ss_pred             C-----eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEeeeecc
Confidence            3     4799999999999999986432                        2357899999999998   999999999


Q ss_pred             CCeeecCCCceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcch-hHHhhh
Q 002376          771 GNILLDEEMTAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNI-VKWVES  849 (929)
Q Consensus       771 ~NILl~~~~~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~-~~~~~~  849 (929)
                      +|||++.++.+||+|||+++........    .......||+.|||||++.++.|+.++||||+|+++|++.. ...++.
T Consensus       164 ~NiLl~~~~~~kl~dfg~~~~~~~~~~~----~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~  239 (299)
T d1fgka_         164 RNVLVTEDNVMKIADFGLARDIHHIDYY----KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYP  239 (299)
T ss_dssp             GGEEECTTCCEEECSTTCCCCGGGCCTT----CCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             cceeecCCCCeEeccchhhccccccccc----cccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCC
Confidence            9999999999999999999976432211    12334578999999999999999999999999987777543 232222


Q ss_pred             cCCchhhhccChHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          850 NLPENVLQVLDPELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       850 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                      ..+.  .+     +........  ++..+..+++.+.+++.+||+.||++||||+||++.|+++.+.
T Consensus       240 ~~~~--~~-----~~~~i~~~~--~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~~L~~i~a~  297 (299)
T d1fgka_         240 GVPV--EE-----LFKLLKEGH--RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL  297 (299)
T ss_dssp             TCCH--HH-----HHHHHHTTC--CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             CCCH--HH-----HHHHHHcCC--CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHhhc
Confidence            2221  11     111111111  1111111222334488899999999999999999999998653

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.8e-38  Score=350.55  Aligned_cols=224  Identities=21%  Similarity=0.246  Sum_probs=165.1

Q ss_pred             CCCCCceeecccCceeEEeccccCc-------------------HHHHHHH---HHHHHccCCccccceeeecccCCCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS-------------------WKSFIAE---CETLRNVRHRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~-------------------~~~~~~E---~~~l~~l~Hpniv~l~~~~~~~~~~~  718 (929)
                      ++|+..++||+|+||+||+|++..+                   ...+.+|   +++++.++|||||++++++.+.    
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~----   79 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTP----   79 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECS----
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEEC----
Confidence            5799999999999999999987521                   1233444   6677778899999999998543    


Q ss_pred             cceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                       ...|+|||||++|+|.+++....        .++.||+.||+|||+.   +||||||||+|||+++++.+||+|||+|+
T Consensus        80 -~~~~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~---~iiHrDlKP~NILl~~~g~iKl~DFGla~  155 (364)
T d1omwa3          80 -DKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLAC  155 (364)
T ss_dssp             -SEEEEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSSSCEEECCCTTCE
T ss_pred             -CEEEEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHC---CccceeeccceeEEcCCCcEEEeeeceee
Confidence             34899999999999999986432        3467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCC-CCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhc
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLG-ERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMT  868 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~  868 (929)
                      .+...        .....+||+.|||||++.+ ..|+.++||||+||++|++.++..++..... ...+    .......
T Consensus       156 ~~~~~--------~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~----~~~~~~~  223 (364)
T d1omwa3         156 DFSKK--------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHE----IDRMTLT  223 (364)
T ss_dssp             ECSSS--------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHH----HHHHSSS
T ss_pred             ecCCC--------cccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHH----HHHhccc
Confidence            66321        1234579999999999875 5689999999999888877666555433221 1111    0111111


Q ss_pred             ccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH
Q 002376          869 SNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR  908 (929)
Q Consensus       869 ~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~  908 (929)
                      ....    .++.+++-+++++.+||+.||++|||     ++|+++
T Consensus       224 ~~~~----~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~  264 (364)
T d1omwa3         224 MAVE----LPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE  264 (364)
T ss_dssp             CCCC----CCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHT
T ss_pred             CCCC----CCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHc
Confidence            1111    11112223344777999999999999     577764

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.4e-38  Score=336.08  Aligned_cols=227  Identities=22%  Similarity=0.268  Sum_probs=170.1

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------------cHHHHHHHHHHHHccC-CccccceeeecccC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------------SWKSFIAECETLRNVR-HRNLVKLITSCSSL  714 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------------~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~  714 (929)
                      ++|+..+.||+|+||+||+|+...                         ..+.+.+|+.++++++ |||||++++++.+ 
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~-   81 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET-   81 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC-
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeccc-
Confidence            689999999999999999997641                         1235889999999997 9999999999954 


Q ss_pred             CCCCcceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecc
Q 002376          715 DSKNMEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDF  786 (929)
Q Consensus       715 ~~~~~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~Df  786 (929)
                          ....|+|||||++|+|.++++..        +.++.||+.||+|||+.   +|+||||||+|||++.++.+||+||
T Consensus        82 ----~~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~Nill~~~~~~kl~DF  154 (277)
T d1phka_          82 ----NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF  154 (277)
T ss_dssp             ----SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred             ----CcceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHc---CCcccccccceEEEcCCCCeEEccc
Confidence                34589999999999999999643        24478999999999998   9999999999999999999999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCC------CCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccC
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLG------ERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLD  860 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~  860 (929)
                      |+|+.+...       ......+||+.|+|||++.+      ..++.++||||+|++++++..+..++.....  .+.. 
T Consensus       155 G~a~~~~~~-------~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~--~~~~-  224 (277)
T d1phka_         155 GFSCQLDPG-------EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQ--MLML-  224 (277)
T ss_dssp             TTCEECCTT-------CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH--HHHH-
T ss_pred             hheeEccCC-------CceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCH--HHHH-
Confidence            999876321       12234579999999998863      3478899999999888777666555543322  1111 


Q ss_pred             hHHHHhhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 PELRQLMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      ..+..   ............+++-+++++.+||+.||++|||++||++
T Consensus       225 ~~i~~---~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~  269 (277)
T d1phka_         225 RMIMS---GNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA  269 (277)
T ss_dssp             HHHHH---TCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred             HHHHh---CCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            11111   1111111111112223334777999999999999999864

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-38  Score=344.05  Aligned_cols=221  Identities=21%  Similarity=0.229  Sum_probs=169.4

Q ss_pred             CCCCCceeecccCceeEEecccc-------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      ++|+..+.||+|+||+||+|++.                   ...+.+.+|+++++.++|||||++++++.+.     ..
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~-----~~  115 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDN-----SN  115 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----SE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeecccccccc-----cc
Confidence            57999999999999999999765                   1235688999999999999999999998543     34


Q ss_pred             EEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .++||||+.+|+|.+++....        .++.||+.||+|||+.   +||||||||+|||++.++.+||+|||+|+.+.
T Consensus       116 ~~~v~e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~---~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~  192 (350)
T d1rdqe_         116 LYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK  192 (350)
T ss_dssp             EEEEEECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECS
T ss_pred             cccccccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecCcCCHHHcccCCCCCEEeeeceeeeecc
Confidence            899999999999999886432        3478999999999998   99999999999999999999999999998763


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .         .....+||+.|||||++.+..++.++||||+||++|++.++..++....  ..+.... +.   ......
T Consensus       193 ~---------~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~--~~~~~~~-i~---~~~~~~  257 (350)
T d1rdqe_         193 G---------RTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ--PIQIYEK-IV---SGKVRF  257 (350)
T ss_dssp             S---------CBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHH-HH---HCCCCC
T ss_pred             c---------ccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcC--HHHHHHH-Hh---cCCCCC
Confidence            2         1234589999999999999999999999999988777655544432211  1111111 11   111111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCC-----CHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRI-----GIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RP-----s~~ev~~  908 (929)
                      ....++    -+.+++.+|++.||++|+     |++|+++
T Consensus       258 p~~~s~----~~~~li~~~L~~dP~kR~~~~r~t~~ell~  293 (350)
T d1rdqe_         258 PSHFSS----DLKDLLRNLLQVDLTKRFGNLKNGVNDIKN  293 (350)
T ss_dssp             CTTCCH----HHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred             CccCCH----HHHHHHHHHhhhCHHhccccccccHHHHHc
Confidence            111222    233477799999999994     8899875

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-38  Score=340.13  Aligned_cols=228  Identities=22%  Similarity=0.225  Sum_probs=171.3

Q ss_pred             hCCCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLAL  724 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~l  724 (929)
                      .++|+..+.||+|+||+||+|.+..               ....+.+|+++|++++|||||++++++.+     ...+|+
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~~~~l   78 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILHLHESFES-----MEELVM   78 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTTBCCEEEEEEE-----TTEEEE
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEEE
Confidence            4689999999999999999998651               23468899999999999999999999854     345899


Q ss_pred             EEEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCC--CceEEeccccccccc
Q 002376          725 VYEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEE--MTAKVGDFGLARFLL  793 (929)
Q Consensus       725 V~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~--~~~ki~DfGla~~~~  793 (929)
                      |||||++|+|.+++....         .++.||+.||+|||+.   +|+||||||+|||++.+  +.+||+|||+++...
T Consensus        79 vmE~~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~---~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~  155 (321)
T d1tkia_          79 IFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK  155 (321)
T ss_dssp             EECCCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECC
T ss_pred             EEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHc---CCCcccccccceeecCCCceEEEEcccchhhccc
Confidence            999999999999987433         2367999999999998   99999999999999854  589999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      .       ........||+.|||||...+..++.++||||+|+++|++..+..++.....  .+++..-...    ....
T Consensus       156 ~-------~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~--~~~~~~i~~~----~~~~  222 (321)
T d1tkia_         156 P-------GDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN--QQIIENIMNA----EYTF  222 (321)
T ss_dssp             T-------TCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH--HHHHHHHHHT----CCCC
T ss_pred             c-------CCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCH--HHHHHHHHhC----CCCC
Confidence            2       1223445799999999999999999999999999888776655544432221  1111111111    1111


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......++.-+++++.+|++.||++|||++|+++
T Consensus       223 ~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~  257 (321)
T d1tkia_         223 DEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQ  257 (321)
T ss_dssp             CHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred             ChhhccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence            11111112222334777999999999999999986

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=338.57  Aligned_cols=236  Identities=19%  Similarity=0.152  Sum_probs=168.8

Q ss_pred             hCCCCCc-eeecccCceeEEeccccC-----------cHHHHHHHHHHHHcc-CCccccceeeecccCCCCCcceEEEEE
Q 002376          660 TGNFSHE-NLIGSGSFGSVLHNERTG-----------SWKSFIAECETLRNV-RHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       660 ~~~~~~~-~~iG~G~~g~Vy~~~~~~-----------~~~~~~~E~~~l~~l-~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      .++|... +.||+|+||+||+|++..           ..+.+.+|++++.++ +|||||++++++.+.. .....+|+||
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~-~~~~~~~ivm   88 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLY-AGRKCLLIVM   88 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECSHHHHHHHHHHHHHTTSTTBCCEEEEEEEEE-TTEEEEEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCcHHHHHHHHHHHHhcCCCCCCeEEEEEeecc-cCCCEEEEEE
Confidence            3578776 469999999999998652           245788999987655 8999999999985422 2345689999


Q ss_pred             EecCCCCccccccccc----------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC---CCceEEeccccccccc
Q 002376          727 EFLSNGSLGDWIHGER----------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE---EMTAKVGDFGLARFLL  793 (929)
Q Consensus       727 e~~~~gsL~~~l~~~~----------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~---~~~~ki~DfGla~~~~  793 (929)
                      |||++|+|.+++....          .++.||+.||+|||+.   +|+||||||+|||+++   ++.+||+|||+|+...
T Consensus        89 Ey~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~---~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~  165 (335)
T d2ozaa1          89 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  165 (335)
T ss_dssp             ECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCSSTTCCEEECCCTTCEECC
T ss_pred             ECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHc---CCccccccccccccccccccccccccccceeeecc
Confidence            9999999999986431          2367899999999998   9999999999999985   5679999999998753


Q ss_pred             cccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccchh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNESQ  873 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  873 (929)
                      ..       ......+||+.|||||++.+..|+.++||||+||++|++.++..++.....  .+..+.............
T Consensus       166 ~~-------~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~--~~~~~~~~~~i~~~~~~~  236 (335)
T d2ozaa1         166 SH-------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHG--LAISPGMKTRIRMGQYEF  236 (335)
T ss_dssp             CC-------CCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTC--C--------CCCSCSSSC
T ss_pred             CC-------CccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCH--HHHHHHHHHHHhcCCCCC
Confidence            22       122345799999999999999999999999999888776665554432211  000010000000000000


Q ss_pred             hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          874 TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       874 ~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                      .......+++.+++++.+|++.||++|||+.|+++
T Consensus       237 ~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~  271 (335)
T d2ozaa1         237 PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMN  271 (335)
T ss_dssp             CTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred             CCcccccCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence            11111122233344788999999999999999976

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-38  Score=339.57  Aligned_cols=224  Identities=25%  Similarity=0.318  Sum_probs=168.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHH-ccCCccccceeeecccCCCCCcc
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLR-NVRHRNLVKLITSCSSLDSKNME  720 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~-~l~Hpniv~l~~~~~~~~~~~~~  720 (929)
                      ++|+..+.||+|+||+||+|++..                   ..+.+.+|..++. .++|||||++++++.+.     .
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~-----~   76 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTK-----E   76 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECS-----S
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccC-----C
Confidence            579999999999999999998752                   2345677777765 68999999999999653     3


Q ss_pred             eEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..|+|||||++|+|.++++...        .++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+|+..
T Consensus        77 ~~yivmEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~---~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~  153 (320)
T d1xjda_          77 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCKEN  153 (320)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred             ceeEEEeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCcccceeecCCCceeccccchhhhc
Confidence            4899999999999999987432        3467999999999998   9999999999999999999999999999865


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHHhhcccch
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  872 (929)
                      ...      ........||+.|||||++.+..++.++||||+||++|++.++..++....  ..++... +..   ....
T Consensus       154 ~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~--~~~~~~~-i~~---~~~~  221 (320)
T d1xjda_         154 MLG------DAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQD--EEELFHS-IRM---DNPF  221 (320)
T ss_dssp             CCT------TCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS--HHHHHHH-HHH---CCCC
T ss_pred             ccc------cccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCC--HHHHHHH-HHc---CCCC
Confidence            321      122334589999999999999999999999999988877766554443221  1111111 111   1111


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHH-HHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIR-EALR  908 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~-ev~~  908 (929)
                          .+..+++.+++++.+||+.||++||++. |+++
T Consensus       222 ----~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~  254 (320)
T d1xjda_         222 ----YPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQ  254 (320)
T ss_dssp             ----CCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGG
T ss_pred             ----CCccCCHHHHHHHHHhcccCCCCCcCHHHHHHh
Confidence                1111223344577799999999999995 6753

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=333.79  Aligned_cols=167  Identities=23%  Similarity=0.345  Sum_probs=136.6

Q ss_pred             CceeecccCceeEEeccccCc---------------------HHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          665 HENLIGSGSFGSVLHNERTGS---------------------WKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       665 ~~~~iG~G~~g~Vy~~~~~~~---------------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ..++||+|+||+||+|++..+                     .+.+.+|++++++++|||||++++++...+     ..|
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~-----~~~   76 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKS-----NIS   76 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTT-----CCE
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCC-----cee
Confidence            357899999999999987511                     235889999999999999999999996543     489


Q ss_pred             EEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||++++++..+....        +.++.||+.||+|||+.   +|+||||||+|||+++++.+||+|||+|+.....
T Consensus        77 ivmE~~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~  153 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAKSFGSP  153 (299)
T ss_dssp             EEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSC
T ss_pred             ehhhhhcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcc---ceecccCCcceEEecCCCccccccCccccccCCC
Confidence            999999988777665422        23467999999999998   9999999999999999999999999999865322


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhH
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~  845 (929)
                            .......+||+.|||||++.+. .|+.++||||+||++|++.++.
T Consensus       154 ------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~  198 (299)
T d1ua2a_         154 ------NRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV  198 (299)
T ss_dssp             ------CCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ------cccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhCc
Confidence                  1122345799999999998755 5799999999999888876544

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=335.37  Aligned_cols=240  Identities=26%  Similarity=0.324  Sum_probs=169.3

Q ss_pred             hhCCCCCceeecccCceeEEeccccC-------------------cHHHHHHHHHHHHcc---CCccccceeeecccCCC
Q 002376          659 ATGNFSHENLIGSGSFGSVLHNERTG-------------------SWKSFIAECETLRNV---RHRNLVKLITSCSSLDS  716 (929)
Q Consensus       659 ~~~~~~~~~~iG~G~~g~Vy~~~~~~-------------------~~~~~~~E~~~l~~l---~Hpniv~l~~~~~~~~~  716 (929)
                      ..++|+..+.||+|+||+||+|++..                   ....+.+|+.+++.+   +|||||+++++|.....
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            34689999999999999999997531                   123566888887766   79999999999875544


Q ss_pred             CCcceEEEEEEecCCCCccccccc---------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHG---------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~---------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                      ......++||||+++|.+......         .+.++.|++.||+|||+.   +||||||||+|||+++++.+||+|||
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~---~ivHrDiKp~NILi~~~~~~kl~dfg  161 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLADFG  161 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECSCC
T ss_pred             ccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEecCCCccEEEEcCCCCeeecchh
Confidence            445678999999998776544321         224578999999999998   99999999999999999999999999


Q ss_pred             cccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-h-hhhccC-----
Q 002376          788 LARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-N-VLQVLD-----  860 (929)
Q Consensus       788 la~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~-~~~~~~-----  860 (929)
                      +++.....       ......+||+.|||||++.+..|+.++||||+||++|++..+..++..... . ...++.     
T Consensus       162 ~~~~~~~~-------~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~  234 (305)
T d1blxa_         162 LARIYSFQ-------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLP  234 (305)
T ss_dssp             SCCCCCGG-------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCC
T ss_pred             hhhhhccc-------ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCC
Confidence            99864321       223456899999999999999999999999999888887655444322211 0 000000     


Q ss_pred             ------h--HH-HHhh-cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          861 ------P--EL-RQLM-TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       861 ------~--~l-~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                            .  .. .... .............+.+.+.+++.+|++.||++|||++|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~  292 (305)
T d1blxa_         235 GEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS  292 (305)
T ss_dssp             CGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred             chhcccccccchhhhhccccccchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence                  0  00 0000 00000000011112233344777999999999999999875

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=328.48  Aligned_cols=173  Identities=29%  Similarity=0.401  Sum_probs=139.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||+||+|++..                  ..+++.+|++++++++|||||++++++.+.     ...
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~-----~~~   76 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-----NKL   76 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccc-----cce
Confidence            689999999999999999997651                  245788999999999999999999999653     358


Q ss_pred             EEEEEecCCCCccccccc----------cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHG----------ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~----------~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      |+||||+.++ +.+++..          .+.++.|++.||+|||+.   +||||||||+|||++.++.+||+|||+|+..
T Consensus        77 ~iv~e~~~~~-~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~---~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~  152 (298)
T d1gz8a_          77 YLVFEFLHQD-LKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAF  152 (298)
T ss_dssp             EEEEECCSEE-HHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTHHHHH
T ss_pred             eEEEeecCCc-hhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcC---CEEccccCchheeecccCcceeccCCcceec
Confidence            9999999754 4433321          123478999999999998   9999999999999999999999999999876


Q ss_pred             ccccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHhh
Q 002376          793 LERVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       793 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      ...      ........||+.|+|||++.... ++.++||||+|+++|++..+..++
T Consensus       153 ~~~------~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf  203 (298)
T d1gz8a_         153 GVP------VRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALF  203 (298)
T ss_dssp             CCC------SBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             cCC------cccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCC
Confidence            321      12233457999999999877766 589999999998877765554443

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-36  Score=319.84  Aligned_cols=216  Identities=23%  Similarity=0.254  Sum_probs=160.7

Q ss_pred             CCCCCceeecccCceeEEeccccCc----------------------HHHHHHHHHHHHccC--CccccceeeecccCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTGS----------------------WKSFIAECETLRNVR--HRNLVKLITSCSSLDS  716 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~~----------------------~~~~~~E~~~l~~l~--Hpniv~l~~~~~~~~~  716 (929)
                      ++|+..+.||+|+||+||+|++..+                      .+++.+|+.++++++  |||||++++++.+.  
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~--   81 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP--   81 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS--
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeC--
Confidence            5789999999999999999886521                      123678999999997  89999999998543  


Q ss_pred             CCcceEEEEEEecCC-CCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-CCceEEecc
Q 002376          717 KNMEFLALVYEFLSN-GSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-EMTAKVGDF  786 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~-gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-~~~~ki~Df  786 (929)
                         ...++||||+.+ +++.+++...        +.++.|++.||+|||+.   +|+||||||+|||++. ++.+||+||
T Consensus        82 ---~~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~---~iiHrDiKp~NIll~~~~~~vkl~DF  155 (273)
T d1xwsa_          82 ---DSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF  155 (273)
T ss_dssp             ---SEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCC
T ss_pred             ---CeEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccccCcccceEEecCCCeEEECcc
Confidence               348999999976 5777776532        23468999999999998   9999999999999985 579999999


Q ss_pred             ccccccccccCCCCCccccceeccccccccccccCCCCC-CCCCCCCCCcCCCCCcchhHHhhhcCCchhhhccChHHHH
Q 002376          787 GLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERP-STAGDVPTSESFAGEFNIVKWVESNLPENVLQVLDPELRQ  865 (929)
Q Consensus       787 Gla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DV~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  865 (929)
                      |+|+....        ......+||+.|||||++.+..+ +.++||||+|+++|++..+     ..|....+    .+..
T Consensus       156 G~a~~~~~--------~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g-----~~Pf~~~~----~i~~  218 (273)
T d1xwsa_         156 GSGALLKD--------TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG-----DIPFEHDE----EIIR  218 (273)
T ss_dssp             TTCEECCS--------SCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHS-----SCSCCSHH----HHHH
T ss_pred             ccceeccc--------ccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhC-----CCCCCCch----HHhh
Confidence            99986532        12234689999999999987765 6778999999877765544     44431110    1111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR  908 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~  908 (929)
                         .....+...++    -+++++.+||+.||++|||++|+++
T Consensus       219 ---~~~~~~~~~s~----~~~~li~~~L~~dp~~R~s~~eil~  254 (273)
T d1xwsa_         219 ---GQVFFRQRVSS----ECQHLIRWCLALRPSDRPTFEEIQN  254 (273)
T ss_dssp             ---CCCCCSSCCCH----HHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred             ---cccCCCCCCCH----HHHHHHHHHccCCHhHCcCHHHHhc
Confidence               00111111222    2334777999999999999999976

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.8e-35  Score=319.35  Aligned_cols=245  Identities=18%  Similarity=0.197  Sum_probs=171.3

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..+.||+|+||+||+|++..              ..+++.+|+++++.++|+|+|..++.|...    ....++||
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~E~~i~~~l~~~~~i~~~~~~~~~----~~~~~ivm   82 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHPQLHIESKIYKMMQGGVGIPTIRWCGAE----GDYNVMVM   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTTSCCHHHHHHHHHHSTTSTTCCCEEEEEEE----TTEEEEEE
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhccCHHHHHHHHHHHHccCCCcccEEEEEEec----CCEEEEEE
Confidence            569999999999999999997651              234688999999999988877776666432    33579999


Q ss_pred             EecCCCCcccccccc---------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeec---CCCceEEecccccccccc
Q 002376          727 EFLSNGSLGDWIHGE---------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLD---EEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       727 e~~~~gsL~~~l~~~---------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~---~~~~~ki~DfGla~~~~~  794 (929)
                      ||+ +|++.+.+...         ..++.|++.||+|||+.   +||||||||+|||++   .+..+|++|||+|+.+..
T Consensus        83 e~~-~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~  158 (299)
T d1ckia_          83 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRD  158 (299)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBC
T ss_pred             EEc-CCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHhhccccccCCCceeeeeccCcceeccc
Confidence            999 45666554321         13467999999999998   999999999999875   456799999999998754


Q ss_pred             ccCCC-CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhhcccch
Q 002376          795 RVDNQ-SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLMTSNES  872 (929)
Q Consensus       795 ~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  872 (929)
                      ..... .........+||+.|||||++.+..++.++||||+|++++++.++..++..... .....+..........  .
T Consensus       159 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~--~  236 (299)
T d1ckia_         159 ARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST--P  236 (299)
T ss_dssp             TTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHS--C
T ss_pred             cccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCC--C
Confidence            32211 111223456899999999999999999999999999888887666666544332 1111110000100000  0


Q ss_pred             hhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHH
Q 002376          873 QTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEI  916 (929)
Q Consensus       873 ~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~  916 (929)
                       .....+.+++-+.+++.+||+.+|++||+++++.+.|+++...
T Consensus       237 -~~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~  279 (299)
T d1ckia_         237 -IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR  279 (299)
T ss_dssp             -HHHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHH
T ss_pred             -hhHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHH
Confidence             0000011112223377799999999999999999999987554

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=9.6e-36  Score=319.26  Aligned_cols=173  Identities=26%  Similarity=0.328  Sum_probs=138.9

Q ss_pred             CCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFLA  723 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~~  723 (929)
                      ++|+..++||+|+||+||+|+++.                 ..+.|.+|+.++++++|||||++++++...+     ..+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~-----~~~   76 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKK-----RLV   76 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSS-----CEE
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCC-----cee
Confidence            578999999999999999997651                 1457999999999999999999999996543     489


Q ss_pred             EEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          724 LVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       724 lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      +||||+.++.+..+.+...        .++.||+.||+|||+.   +||||||||+|||++.++.+|++|||.|......
T Consensus        77 i~~e~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~---~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~  153 (286)
T d1ob3a_          77 LVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIP  153 (286)
T ss_dssp             EEEECCSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC-
T ss_pred             EEEEeehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccC---cEEecCCCCceeeEcCCCCEEecccccceecccC
Confidence            9999998877766655322        3478999999999998   9999999999999999999999999999875321


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                            ........|++.|+|||.+.+. .++.++||||+|++++++..+..+
T Consensus       154 ------~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~p  200 (286)
T d1ob3a_         154 ------VRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL  200 (286)
T ss_dssp             --------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             ------ccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCC
Confidence                  1122344689999999998765 469999999999887776554443

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-35  Score=318.27  Aligned_cols=184  Identities=24%  Similarity=0.340  Sum_probs=142.2

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC---CC
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS---KN  718 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~---~~  718 (929)
                      .++|+..+.||+|+||+||+|++..                  ..+++.+|+++|++++||||+++++++.....   ..
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            4689999999999999999998651                  23568899999999999999999999865332   12


Q ss_pred             cceEEEEEEecCCCCcccccccc--------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE--------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~--------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      ....|+||||++++.+..+....        +.++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||+|+
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~---~ivHrDlKp~NILl~~~~~~kl~dfg~~~  165 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFGLAR  165 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCE
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccC---CEEecCcCchheeecCCCcEEeeecceee
Confidence            34589999999887766544322        23467999999999998   99999999999999999999999999998


Q ss_pred             ccccccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhh
Q 002376          791 FLLERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVE  848 (929)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~  848 (929)
                      .........  .......+||+.|+|||++.+. .++.++||||+|++++++.++..++
T Consensus       166 ~~~~~~~~~--~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf  222 (318)
T d3blha1         166 AFSLAKNSQ--PNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIM  222 (318)
T ss_dssp             ECCC-------CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             ecccccccc--cccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCC
Confidence            764322111  1122335799999999998766 5899999999998888766554443

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=7.3e-35  Score=312.78  Aligned_cols=243  Identities=16%  Similarity=0.135  Sum_probs=176.2

Q ss_pred             CCCCCceeecccCceeEEeccccC--------------cHHHHHHHHHHHHccCC-ccccceeeecccCCCCCcceEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG--------------SWKSFIAECETLRNVRH-RNLVKLITSCSSLDSKNMEFLALV  725 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~--------------~~~~~~~E~~~l~~l~H-pniv~l~~~~~~~~~~~~~~~~lV  725 (929)
                      ++|+..+.||+|+||+||+|++..              ..+.+.+|++.++.++| +|++.+++++.+     ....++|
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~~~v   79 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHNVLV   79 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTTSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccCcHHHHHHHHHHHHhcCCCCCCEEEEEeec-----CCccEEE
Confidence            579999999999999999997652              23457889999999976 899999988754     3347999


Q ss_pred             EEecCCCCccccccccc---------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecC-----CCceEEeccccccc
Q 002376          726 YEFLSNGSLGDWIHGER---------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDE-----EMTAKVGDFGLARF  791 (929)
Q Consensus       726 ~e~~~~gsL~~~l~~~~---------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~-----~~~~ki~DfGla~~  791 (929)
                      |||+ +|+|.++++...         .++.|++.||+|||+.   +|+||||||+|||++.     ++.+||+|||+|+.
T Consensus        80 me~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~---giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          80 IDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             EECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred             EEec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHC---CceeccCCccceeecCcccccCCceEEcccceeEE
Confidence            9999 689988876322         3467899999999998   9999999999999974     56899999999997


Q ss_pred             cccccCCC-CCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHHhh--
Q 002376          792 LLERVDNQ-SSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQLM--  867 (929)
Q Consensus       792 ~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~--  867 (929)
                      ........ .........+||+.|||||++.+..++.++||||+|++++++.....++..... ...+.. ..+....  
T Consensus       156 ~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~-~~i~~~~~~  234 (293)
T d1csna_         156 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKY-ERIGEKKQS  234 (293)
T ss_dssp             SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHH-HHHHHHHHH
T ss_pred             cccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHH-HHHHhccCC
Confidence            65332211 111223456899999999999999999999999999888887666665543322 111100 0111100  


Q ss_pred             cccchhhhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHHHHhhHHHH
Q 002376          868 TSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRRLKSSQEIL  917 (929)
Q Consensus       868 ~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~L~~~~~~~  917 (929)
                      ..........+   .++. +++..|++.+|++||+++.+.+.|+++.+..
T Consensus       235 ~~~~~l~~~~p---~~l~-~ii~~~~~~~~~~rP~y~~l~~~l~~~~~~~  280 (293)
T d1csna_         235 TPLRELCAGFP---EEFY-KYMHYARNLAFDATPDYDYLQGLFSKVLERL  280 (293)
T ss_dssp             SCHHHHTTTSC---HHHH-HHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred             CChHHhcCCCC---HHHH-HHHHHHhcCCcccCcCHHHHHHHHHHHHHHc
Confidence            00000001111   2233 3777999999999999999999999887654

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.1e-35  Score=321.85  Aligned_cols=181  Identities=23%  Similarity=0.295  Sum_probs=140.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC-----------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG-----------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~-----------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      +++|+..+.||+|+||+||+|++..                 ..+++.+|+++|++++|||||++++++...........
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            4578999999999999999997641                 23578899999999999999999999976543333344


Q ss_pred             EEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLER  795 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~  795 (929)
                      ++ +||+.+|+|.+++...       +.++.|++.||+|||+.   +||||||||+|||+++++.+||+|||+|+.....
T Consensus        87 ~l-~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~---~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~  162 (345)
T d1pmea_          87 YL-VTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARVADPD  162 (345)
T ss_dssp             EE-EEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECCGG
T ss_pred             EE-EEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCcceEEECCCCCEEEcccCceeeccCC
Confidence            55 4566799999998633       23478999999999998   9999999999999999999999999999876433


Q ss_pred             cCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHh
Q 002376          796 VDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       796 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                      ...   .......+||+.|+|||++... .++.++||||+|++++++.++..+
T Consensus       163 ~~~---~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~p  212 (345)
T d1pmea_         163 HDH---TGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPI  212 (345)
T ss_dssp             GCB---CCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCS
T ss_pred             Ccc---ceeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCC
Confidence            221   1123446799999999998554 578999999999888776655443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.7e-33  Score=304.52  Aligned_cols=257  Identities=34%  Similarity=0.569  Sum_probs=238.0

Q ss_pred             CCCCEEEccCCcccc--ccCchhhhccccccEEEecC-CccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCC
Q 002376          328 THLNYLALDGNQFEG--KIPESIGNFSNELSKLYLGG-NHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQ  404 (929)
Q Consensus       328 ~~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  404 (929)
                      .+++.|+|++|+++|  .+|..+++++ +|++|+|++ |+++|.+|..|+++++|++|+|++|++.+..+..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            468899999999988  5899999998 799999997 899999999999999999999999999999999999999999


Q ss_pred             EEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccccc-ceecccCCcCCCCCCCCcccCCchhhhcccCc
Q 002376          405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSL-LSIDLSNNRINGNIPKGILRPLPEEISRLENV  483 (929)
Q Consensus       405 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L  483 (929)
                      ++++++|.+.+.+|..+.+++.|+.+++++|++++.+|..+..+..+ +.+++++|+++|..        |..+..+.. 
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~--------~~~~~~l~~-  199 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI--------PPTFANLNL-  199 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC--------CGGGGGCCC-
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccc--------ccccccccc-
Confidence            99999999999999999999999999999999999999999888876 88999999999765        556666654 


Q ss_pred             cEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCC
Q 002376          484 VTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       484 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      ..+++++|.+.|.+|..+..+++|+.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..+.++++|++|||++|
T Consensus       200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N  278 (313)
T d1ogqa_         200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence            479999999999999999999999999999999998776 5889999999999999999999999999999999999999


Q ss_pred             cCcccCCCCCCCCCCCcccccCCCCCcCCC--CC
Q 002376          564 NLEGVVPSEGIFRNMSNVHLKGNPKLCLQL--GC  595 (929)
Q Consensus       564 ~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~--~c  595 (929)
                      +|+|.+|+.+.+++++.+++.||+.+|+.|  .|
T Consensus       279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c  312 (313)
T d1ogqa_         279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             EEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cccccCCCcccCCCCCHHHhCCCccccCCCCCCC
Confidence            999999998889999999999999999875  66

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-35  Score=324.59  Aligned_cols=243  Identities=21%  Similarity=0.276  Sum_probs=164.9

Q ss_pred             CCCCceeecccCceeEEeccccCc------------HHHHHHHHHHHHccCCccccceeeecccCCC-CCcceEEEEEEe
Q 002376          662 NFSHENLIGSGSFGSVLHNERTGS------------WKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEFLALVYEF  728 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~~------------~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~~~lV~e~  728 (929)
                      +|+..++||+|+||+||+|++..+            .+.+.+|+++|++++|||||+++++|..... .+..++++||||
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey  100 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLVLDY  100 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEEEEEC
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEEEEec
Confidence            578889999999999999987622            2345689999999999999999999865432 344568999999


Q ss_pred             cCCCCcccccc-----------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEecccccccccccc
Q 002376          729 LSNGSLGDWIH-----------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERV  796 (929)
Q Consensus       729 ~~~gsL~~~l~-----------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~~~~  796 (929)
                      |++|.+....+           ..+.++.||+.||+|||+.   +|+||||||+|||++.++ .+||+|||+|+.+... 
T Consensus       101 ~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~-  176 (350)
T d1q5ka_         101 VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG-  176 (350)
T ss_dssp             CSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT-
T ss_pred             cCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhc---CCcccCCCcceEEEecCCCceeEecccchhhccCC-
Confidence            98664333321           1224477999999999998   999999999999999775 8999999999876322 


Q ss_pred             CCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc--hhhhccC-------hHHHHh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE--NVLQVLD-------PELRQL  866 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~--~~~~~~~-------~~l~~~  866 (929)
                            ......+||+.|+|||.+.+. .++.++||||+||++|++..+..++.....  ...+++.       ......
T Consensus       177 ------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~  250 (350)
T d1q5ka_         177 ------EPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREM  250 (350)
T ss_dssp             ------SCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             ------cccccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhh
Confidence                  112335799999999988754 689999999999888776655443322211  0111000       000000


Q ss_pred             hcc--------cchh--hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHH--HHHhhH
Q 002376          867 MTS--------NESQ--TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALR--RLKSSQ  914 (929)
Q Consensus       867 ~~~--------~~~~--~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~--~L~~~~  914 (929)
                      ...        ....  ...........+.+++.+|++.||++|||++|+++  .++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         251 NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             CC---CCCCCCCCCCCGGGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             ccchhhccccccccCchhhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence            000        0000  00000001122333777999999999999999985  355543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=7.8e-35  Score=318.62  Aligned_cols=172  Identities=23%  Similarity=0.303  Sum_probs=141.6

Q ss_pred             CCCCCceeecccCceeEEecccc-------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVY  726 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~  726 (929)
                      ++|+..++||+|+||+||+|++.             ...+++.+|+++|++++ ||||+++++++...   .....++||
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~---~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADIVKDP---VSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSCHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEec---CCCceeEEE
Confidence            57999999999999999999865             23578899999999995 99999999998642   234589999


Q ss_pred             EecCCCCccccccc-----cccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-ceEEeccccccccccccCCCC
Q 002376          727 EFLSNGSLGDWIHG-----ERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-TAKVGDFGLARFLLERVDNQS  800 (929)
Q Consensus       727 e~~~~gsL~~~l~~-----~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-~~ki~DfGla~~~~~~~~~~~  800 (929)
                      |||++|+|.++.+.     .+.++.||+.||+|||+.   +|+||||||+|||++.++ .+||+|||+|+.....     
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~---gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~-----  183 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPG-----  183 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCGGGCEECCTT-----
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhc---ccccccccccceEEcCCCCeeeecccccceeccCC-----
Confidence            99999999887642     235578999999999998   999999999999998655 6999999999876322     


Q ss_pred             CccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhH
Q 002376          801 SISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVK  845 (929)
Q Consensus       801 ~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~  845 (929)
                        ......+||+.|+|||.+.+.. ++.++||||+|++++++....
T Consensus       184 --~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~  227 (328)
T d3bqca1         184 --QEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRK  227 (328)
T ss_dssp             --CCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTC
T ss_pred             --CcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCC
Confidence              1123457899999999987764 799999999998777654443

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=322.40  Aligned_cols=243  Identities=21%  Similarity=0.271  Sum_probs=164.6

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcc
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNME  720 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~  720 (929)
                      .++|+..+.||+|+||+||+|.+..                  ..+.+.+|+++|++++|||||+++++|...+. ....
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            4689999999999999999997651                  13568899999999999999999999976542 1234


Q ss_pred             eEEEEEEecCCCCcccccccc-------ccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccccccc
Q 002376          721 FLALVYEFLSNGSLGDWIHGE-------RKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLL  793 (929)
Q Consensus       721 ~~~lV~e~~~~gsL~~~l~~~-------~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~  793 (929)
                      .+|+||||+ +++|..+.+..       +.++.|++.||+|||+.   +|+||||||+|||++.++.+|++|||+|+...
T Consensus        97 ~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~  172 (346)
T d1cm8a_          97 DFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLARQAD  172 (346)
T ss_dssp             CCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             eEEEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCcchhhcccccccccccccceeccC
Confidence            579999999 56777666432       24478999999999998   99999999999999999999999999998653


Q ss_pred             cccCCCCCccccceeccccccccccccCCC-CCCCCCCCCCCcCCCCCcchhHHhhhcCCc----------------hhh
Q 002376          794 ERVDNQSSISSTHVFMGSIGYVPPEYGLGE-RPSTAGDVPTSESFAGEFNIVKWVESNLPE----------------NVL  856 (929)
Q Consensus       794 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DV~s~g~~~~~~~~~~~~~~~~~~----------------~~~  856 (929)
                      .         ..+..+||+.|||||++.+. .++.++||||+|++++++..+..++.....                ...
T Consensus       173 ~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~  243 (346)
T d1cm8a_         173 S---------EMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFV  243 (346)
T ss_dssp             S---------SCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHH
T ss_pred             C---------ccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHH
Confidence            2         12345799999999998765 579999999999887776554433322111                000


Q ss_pred             hccChHH----HHhhcccchh-hhhhhHHHHHHHHHHhccccCCCCCCCCCHHHHHHH--HHhhHH
Q 002376          857 QVLDPEL----RQLMTSNESQ-TIQLHDCLITIIGSVGLSCTTESPGGRIGIREALRR--LKSSQE  915 (929)
Q Consensus       857 ~~~~~~l----~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs~~ev~~~--L~~~~~  915 (929)
                      +......    .......... .......+...+.+++.+|++.||++|||++|+++.  ++++..
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         244 QRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             HTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             hhhcchhhhhhhccCCcccccchHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence            0000000    0000000000 000000112223347889999999999999999873  655543

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5e-34  Score=315.23  Aligned_cols=177  Identities=23%  Similarity=0.264  Sum_probs=134.5

Q ss_pred             CCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCC-CCcce
Q 002376          661 GNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDS-KNMEF  721 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~-~~~~~  721 (929)
                      ++|+..++||+|+||+||+|++..                  ..+++.+|+.++++++|||||++++++...+. +....
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            579999999999999999998652                  13468899999999999999999999875432 23467


Q ss_pred             EEEEEEecCCCCcccccc-----ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIH-----GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLERV  796 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~-----~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~~~  796 (929)
                      .|+|||||.++.+..+..     ..+.++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||+++..... 
T Consensus        97 ~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~---giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~-  172 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTS-  172 (355)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC--------
T ss_pred             eEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhc---ccccccCCccccccccccceeeechhhhhccccc-
Confidence            899999997655544322     2234578999999999998   9999999999999999999999999998865321 


Q ss_pred             CCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchhHHh
Q 002376          797 DNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       797 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                            ......+||+.|+|||++.+..++.++||||+||+++++..+..+
T Consensus       173 ------~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~p  217 (355)
T d2b1pa1         173 ------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKIL  217 (355)
T ss_dssp             --------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ------cccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCC
Confidence                  223445799999999999999999999999999887776555443

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-34  Score=313.91  Aligned_cols=233  Identities=21%  Similarity=0.256  Sum_probs=168.6

Q ss_pred             CCCCCceeecccCceeEEecccc-----------------------CcHHHHHHHHHHHHccCC-ccccceeeecccCCC
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT-----------------------GSWKSFIAECETLRNVRH-RNLVKLITSCSSLDS  716 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~-----------------------~~~~~~~~E~~~l~~l~H-pniv~l~~~~~~~~~  716 (929)
                      ++|+..+.||+|+||+||+|+..                       ...+.+.+|++++++++| |||+++++++.+.  
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~--  101 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE--  101 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET--
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccC--
Confidence            56999999999999999998642                       123467799999999976 8999999998543  


Q ss_pred             CCcceEEEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccc
Q 002376          717 KNMEFLALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGL  788 (929)
Q Consensus       717 ~~~~~~~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGl  788 (929)
                         ...++||||+.+|+|.+++...+        ..+.|++.|++|+|+.   +|+||||||+|||++.++.+||+|||+
T Consensus       102 ---~~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~---~ivHrDiKp~Nill~~~~~vkL~DFG~  175 (322)
T d1vzoa_         102 ---TKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGL  175 (322)
T ss_dssp             ---TEEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSE
T ss_pred             ---CceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcC---CEEeccCCccceeecCCCCEEEeeccc
Confidence               35899999999999999986433        2367999999999998   999999999999999999999999999


Q ss_pred             ccccccccCCCCCccccceeccccccccccccCCCC--CCCCCCCCCCcCCCCCcchhHHhhhcCCc-hhhhccChHHHH
Q 002376          789 ARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGER--PSTAGDVPTSESFAGEFNIVKWVESNLPE-NVLQVLDPELRQ  865 (929)
Q Consensus       789 a~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DV~s~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~  865 (929)
                      |+.+....     ........|++.|+|||.+.+..  ++.++||||+||++|++.++..++..... .....+   ...
T Consensus       176 a~~~~~~~-----~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i---~~~  247 (322)
T d1vzoa_         176 SKEFVADE-----TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEI---SRR  247 (322)
T ss_dssp             EEECCGGG-----GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHH---HHH
T ss_pred             hhhhcccc-----cccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH---HHh
Confidence            98764221     11223457999999999997653  68899999999888777666555432221 111111   111


Q ss_pred             hhcccchhhhhhhHHHHHHHHHHhccccCCCCCCCCC-----HHHHHH--HHHhh
Q 002376          866 LMTSNESQTIQLHDCLITIIGSVGLSCTTESPGGRIG-----IREALR--RLKSS  913 (929)
Q Consensus       866 ~~~~~~~~~~~~~~~~~~~~~~l~~~Cl~~dP~~RPs-----~~ev~~--~L~~~  913 (929)
                      ............    +..+.+++.+||++||++|||     ++|+++  .++++
T Consensus       248 ~~~~~~~~~~~~----s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i  298 (322)
T d1vzoa_         248 ILKSEPPYPQEM----SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  298 (322)
T ss_dssp             HHHCCCCCCTTS----CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             cccCCCCCcccC----CHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCC
Confidence            111111111111    222233777999999999994     788875  34443

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-34  Score=305.39  Aligned_cols=172  Identities=26%  Similarity=0.371  Sum_probs=142.4

Q ss_pred             CCCCCceeecccCceeEEecccc------------------CcHHHHHHHHHHHHccCCccccceeeecccCCCCCcceE
Q 002376          661 GNFSHENLIGSGSFGSVLHNERT------------------GSWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEFL  722 (929)
Q Consensus       661 ~~~~~~~~iG~G~~g~Vy~~~~~------------------~~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~~  722 (929)
                      ++|+..+.||+|+||+||+|++.                  ...+++.+|+.++++++|||||+++++|.+.+     ..
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~-----~~   76 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDK-----KL   76 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSS-----EE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeecccccccc-----ce
Confidence            57899999999999999999865                  12467889999999999999999999996543     48


Q ss_pred             EEEEEecCCCCccccccccc--------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          723 ALVYEFLSNGSLGDWIHGER--------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       723 ~lV~e~~~~gsL~~~l~~~~--------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      ++|+||+.++++..+++..+        .++.|++.||+|||+.   +|+||||||+|||++.++.+||+|||.|+....
T Consensus        77 ~iv~~~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~---~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~  153 (292)
T d1unla_          77 TLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGI  153 (292)
T ss_dssp             EEEEECCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCS
T ss_pred             eEEeeeccccccccccccccccchhHHHHHHHHHHHHHHHhhcC---CEeeecccCcccccccCCceeeeecchhhcccC
Confidence            99999999998888765432        3467999999999998   999999999999999999999999999987642


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHH
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKW  846 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~  846 (929)
                      ..      .......+++.|+|||++.+.. ++.++||||+|++++++..+..
T Consensus       154 ~~------~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~  200 (292)
T d1unla_         154 PV------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR  200 (292)
T ss_dssp             CC------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSC
T ss_pred             CC------ccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCC
Confidence            21      1222346788999999988765 6999999999988877655443

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.7e-34  Score=314.07  Aligned_cols=176  Identities=23%  Similarity=0.311  Sum_probs=139.7

Q ss_pred             hCCCCCceeecccCceeEEeccccC------------------cHHHHHHHHHHHHccCCccccceeeecccCCCCCcce
Q 002376          660 TGNFSHENLIGSGSFGSVLHNERTG------------------SWKSFIAECETLRNVRHRNLVKLITSCSSLDSKNMEF  721 (929)
Q Consensus       660 ~~~~~~~~~iG~G~~g~Vy~~~~~~------------------~~~~~~~E~~~l~~l~Hpniv~l~~~~~~~~~~~~~~  721 (929)
                      .++|+..+.||+|+||+||+|++..                  ..+++.+|++++++++|||||++++++..........
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            5689999999999999999997651                  2346889999999999999999999986544323334


Q ss_pred             EEEEEEecCCCCccccccccc-------cccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEecccccccccc
Q 002376          722 LALVYEFLSNGSLGDWIHGER-------KNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLARFLLE  794 (929)
Q Consensus       722 ~~lV~e~~~~gsL~~~l~~~~-------~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~~~  794 (929)
                      .++||||+.+|+|.++++..+       .++.||+.||+|||+.   +|+||||||+|||++.++.+|++|||+|.....
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~---giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLARHTDD  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCC----CCTG
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhC---CCcccccCCccccccccccccccccchhcccCc
Confidence            567778888999999986432       3467999999999998   999999999999999999999999999975422


Q ss_pred             ccCCCCCccccceeccccccccccccCCCC-CCCCCCCCCCcCCCCCcchhHHh
Q 002376          795 RVDNQSSISSTHVFMGSIGYVPPEYGLGER-PSTAGDVPTSESFAGEFNIVKWV  847 (929)
Q Consensus       795 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DV~s~g~~~~~~~~~~~~  847 (929)
                               ......||+.|+|||+..+.. ++.++||||+|+++|++..+..+
T Consensus       174 ---------~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~p  218 (348)
T d2gfsa1         174 ---------EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL  218 (348)
T ss_dssp             ---------GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCC
Confidence                     123457999999999877664 68999999999888776555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=2e-29  Score=281.94  Aligned_cols=209  Identities=26%  Similarity=0.397  Sum_probs=139.6

Q ss_pred             CCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEe
Q 002376          329 HLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGL  408 (929)
Q Consensus       329 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  408 (929)
                      .........|...  .+.....+. ++..+++++|.+++..|  +...++|+.|++++|++++.  ..+..+++|+.|++
T Consensus       176 ~~~~~~~~~~~~~--~~~~~~~l~-~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l  248 (384)
T d2omza2         176 TLERLDISSNKVS--DISVLAKLT-NLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDL  248 (384)
T ss_dssp             TCCEEECCSSCCC--CCGGGGGCT-TCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred             ccccccccccccc--ccccccccc-ccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhcc
Confidence            3333444444432  223334444 56666666666665443  34456677777777777642  35666777777777


Q ss_pred             cCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEe
Q 002376          409 AGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDL  488 (929)
Q Consensus       409 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdL  488 (929)
                      ++|++++..+  +..+++|++|++++|++++..+  +.++..++.++++.|.+++          +..+..+++++.|++
T Consensus       249 ~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~----------~~~~~~~~~l~~L~l  314 (384)
T d2omza2         249 ANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED----------ISPISNLKNLTYLTL  314 (384)
T ss_dssp             CSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSC----------CGGGGGCTTCSEEEC
T ss_pred             ccCccCCCCc--ccccccCCEeeccCcccCCCCc--ccccccccccccccccccc----------ccccchhcccCeEEC
Confidence            7777765433  6667777777777777765432  5667777777777777764          234566777888888


Q ss_pred             cCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCc
Q 002376          489 SDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       489 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      ++|++++..  .+..+++|++|++++|+|++ ++ .++.+++|++|||++|++++..|  +.++++|+.|+|++|.
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            888887643  37778888888888888875 33 57788888888888888886554  7788888888888773

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=4.5e-29  Score=278.96  Aligned_cols=355  Identities=27%  Similarity=0.345  Sum_probs=214.8

Q ss_pred             cCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCC
Q 002376           78 LSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITG  157 (929)
Q Consensus        78 l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  157 (929)
                      ++..++++.++  ...|.+|++|++++|.|+. + +.+..|++|++|||++|+|++..|  |+++++|++|++++|+|++
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~  102 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD  102 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccccc
Confidence            33344444443  2456677888888887764 3 356777888888888888875433  7778888888888888763


Q ss_pred             CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecCCC
Q 002376          158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLG  237 (929)
Q Consensus       158 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  237 (929)
                       +++  +.++++|+.|++++|.+++..+          ......+..+....|.+....+..................+ 
T Consensus       103 -i~~--l~~l~~L~~L~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-  168 (384)
T d2omza2         103 -ITP--LANLTNLTGLTLFNNQITDIDP----------LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-  168 (384)
T ss_dssp             -CGG--GTTCTTCCEEECCSSCCCCCGG----------GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-
T ss_pred             -ccc--cccccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccccchh-
Confidence             332  6777777777777776644211          22344556666666666544333322222222211111111 


Q ss_pred             CcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCC
Q 002376          238 GEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEG  317 (929)
Q Consensus       238 ~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~  317 (929)
                                                   ..+.............|....  .                           
T Consensus       169 -----------------------------~~~~~~~~~~~~~~~~~~~~~--~---------------------------  190 (384)
T d2omza2         169 -----------------------------KPLANLTTLERLDISSNKVSD--I---------------------------  190 (384)
T ss_dssp             -----------------------------GGGTTCTTCCEEECCSSCCCC--C---------------------------
T ss_pred             -----------------------------hhhcccccccccccccccccc--c---------------------------
Confidence                                         112222222333333332221  1                           


Q ss_pred             CccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccc
Q 002376          318 LSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEI  397 (929)
Q Consensus       318 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  397 (929)
                          ..+..+++++.+++++|++++..|.  .... +|++|++++|+++..  +.+..+++|+.|++++|.+++..+  +
T Consensus       191 ----~~~~~l~~~~~l~l~~n~i~~~~~~--~~~~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~  259 (384)
T d2omza2         191 ----SVLAKLTNLESLIATNNQISDITPL--GILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--L  259 (384)
T ss_dssp             ----GGGGGCTTCSEEECCSSCCCCCGGG--GGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred             ----cccccccccceeeccCCccCCCCcc--cccC-CCCEEECCCCCCCCc--chhhcccccchhccccCccCCCCc--c
Confidence                1233344555555555555543331  2222 566666666666532  345666677777777777765432  6


Q ss_pred             cCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhh
Q 002376          398 GQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEI  477 (929)
Q Consensus       398 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~  477 (929)
                      ..+++|++|++++|++++..  .+..++.++.+++++|.+++.  ..+..+++++.|++++|++++.         + .+
T Consensus       260 ~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l---------~-~l  325 (384)
T d2omza2         260 SGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDI---------S-PV  325 (384)
T ss_dssp             TTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCC---------G-GG
T ss_pred             cccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCC---------c-cc
Confidence            66777777777777776543  266677777777777777652  3466777788888888887642         2 25


Q ss_pred             hcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCC
Q 002376          478 SRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSN  539 (929)
Q Consensus       478 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  539 (929)
                      ..+++|++|+|++|++++ +| .++++++|++|++++|+|++.+|  +.++++|+.|+|++|
T Consensus       326 ~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         326 SSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            667788888888888874 34 58888888888888888887665  788888999988887

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.5e-26  Score=248.11  Aligned_cols=251  Identities=24%  Similarity=0.333  Sum_probs=139.0

Q ss_pred             CCCCCCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCC
Q 002376           55 SSSPCTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGE  134 (929)
Q Consensus        55 ~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  134 (929)
                      ..+-|.|.+|.|++.            +++ ++|+.+.  +++++|+|++|+|+...+.+|.++++|++|++++|.+...
T Consensus         6 ~~c~c~~~~~~C~~~------------~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_           6 FRCQCHLRVVQCSDL------------GLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             TTCEEETTEEECTTS------------CCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             CCCEecCCEEEecCC------------CCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc
Confidence            344578888888753            344 5666653  5677777777777755555677777777777777777766


Q ss_pred             cccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCC
Q 002376          135 LPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAG  214 (929)
Q Consensus       135 ~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~  214 (929)
                      .|..|.++++|++|++++|+|+ .+|...                                   ...++.|++++|.+.+
T Consensus        71 ~~~~f~~l~~L~~L~l~~n~l~-~l~~~~-----------------------------------~~~l~~L~~~~n~l~~  114 (305)
T d1xkua_          71 SPGAFAPLVKLERLYLSKNQLK-ELPEKM-----------------------------------PKTLQELRVHENEITK  114 (305)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS-BCCSSC-----------------------------------CTTCCEEECCSSCCCB
T ss_pred             chhhhhCCCccCEecccCCccC-cCccch-----------------------------------hhhhhhhhccccchhh
Confidence            6667777777777777777776 444321                                   1234445555555554


Q ss_pred             ccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCC
Q 002376          215 TVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLG  294 (929)
Q Consensus       215 ~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  294 (929)
                      ..+..+.....+..++...|...                       .....+..+..+++|+.+++++|.++. +|..  
T Consensus       115 l~~~~~~~~~~~~~l~~~~n~~~-----------------------~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~--  168 (305)
T d1xkua_         115 VRKSVFNGLNQMIVVELGTNPLK-----------------------SSGIENGAFQGMKKLSYIRIADTNITT-IPQG--  168 (305)
T ss_dssp             BCHHHHTTCTTCCEEECCSSCCC-----------------------GGGBCTTGGGGCTTCCEEECCSSCCCS-CCSS--
T ss_pred             hhhhhhhcccccccccccccccc-----------------------ccCCCccccccccccCccccccCCccc-cCcc--
Confidence            44444444555555555544332                       111223334445555555555555442 2210  


Q ss_pred             CCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCC
Q 002376          295 NLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIG  374 (929)
Q Consensus       295 ~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~  374 (929)
                                                     ..++|+.|++++|.+++..+..+..+. .+++|++++|++++..+.+|.
T Consensus       169 -------------------------------~~~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~L~~s~n~l~~~~~~~~~  216 (305)
T d1xkua_         169 -------------------------------LPPSLTELHLDGNKITKVDAASLKGLN-NLAKLGLSFNSISAVDNGSLA  216 (305)
T ss_dssp             -------------------------------CCTTCSEEECTTSCCCEECTGGGTTCT-TCCEEECCSSCCCEECTTTGG
T ss_pred             -------------------------------cCCccCEEECCCCcCCCCChhHhhccc-ccccccccccccccccccccc
Confidence                                           123445555555555544444444443 455555555555555555555


Q ss_pred             CCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCC
Q 002376          375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPG  415 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  415 (929)
                      ++++|++|+|++|+|+ .+|..|..+++|++|+|++|+|+.
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            5555555555555555 334455555555555555555553

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.4e-29  Score=279.08  Aligned_cols=169  Identities=21%  Similarity=0.246  Sum_probs=129.0

Q ss_pred             CCCCceeecccCceeEEeccccC---------------cHHHHHHHHHHHHccC-----------CccccceeeecccCC
Q 002376          662 NFSHENLIGSGSFGSVLHNERTG---------------SWKSFIAECETLRNVR-----------HRNLVKLITSCSSLD  715 (929)
Q Consensus       662 ~~~~~~~iG~G~~g~Vy~~~~~~---------------~~~~~~~E~~~l~~l~-----------Hpniv~l~~~~~~~~  715 (929)
                      +|+..++||+|+||+||+|+...               ..+.+.+|++++++++           |+|||++++++... 
T Consensus        14 rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~-   92 (362)
T d1q8ya_          14 RYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK-   92 (362)
T ss_dssp             TEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE-
T ss_pred             cEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec-
Confidence            58999999999999999997652               1356788999988875           57899999887542 


Q ss_pred             CCCcceEEEEEEecCCCCcccccc-----------ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCC-----
Q 002376          716 SKNMEFLALVYEFLSNGSLGDWIH-----------GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEM-----  779 (929)
Q Consensus       716 ~~~~~~~~lV~e~~~~gsL~~~l~-----------~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~-----  779 (929)
                        .....++||+++..+.......           ..+.+..||+.||+|||+..  +|+||||||+|||++.++     
T Consensus        93 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~--~IvHrDlKp~NIll~~~~~~~~~  168 (362)
T d1q8ya_          93 --GPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPENL  168 (362)
T ss_dssp             --ETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTTTE
T ss_pred             --cccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhc--CcccccCChhHeeeeccCccccc
Confidence              2334677787776654332221           11234679999999999832  899999999999998655     


Q ss_pred             -ceEEeccccccccccccCCCCCccccceeccccccccccccCCCCCCCCCCCCCCcCCCCCcchh
Q 002376          780 -TAKVGDFGLARFLLERVDNQSSISSTHVFMGSIGYVPPEYGLGERPSTAGDVPTSESFAGEFNIV  844 (929)
Q Consensus       780 -~~ki~DfGla~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DV~s~g~~~~~~~~~  844 (929)
                       .+|++|||.|+....         .....+||+.|+|||++.+..++.++||||+|++++++.++
T Consensus       169 ~~~kl~dfg~s~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  225 (362)
T d1q8ya_         169 IQIKIADLGNACWYDE---------HYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG  225 (362)
T ss_dssp             EEEEECCCTTCEETTB---------CCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             ceeeEeeccccccccc---------ccccccccccccChhhccccCCCccccccchHHHHHHHHHC
Confidence             399999999975421         12335799999999999999999999999999877665443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=3.7e-25  Score=238.77  Aligned_cols=288  Identities=20%  Similarity=0.262  Sum_probs=157.5

Q ss_pred             CceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccc
Q 002376          226 LVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG  305 (929)
Q Consensus       226 L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  305 (929)
                      ++++|-+++.++ .+|..+.   +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            344444444454 4444432   344555555555554444566667777777777777776666666666666666666


Q ss_pred             cccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccc--cccCCCCCCCCcccEEE
Q 002376          306 FNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIY--GKIPASIGRLRSLTLLD  383 (929)
Q Consensus       306 ~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~  383 (929)
                      +|+|..++..          ....+..|++++|.+.+..+..+... ..+..++...|...  ...+..|..+++|++++
T Consensus        88 ~n~l~~l~~~----------~~~~l~~L~~~~n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~  156 (305)
T d1xkua_          88 KNQLKELPEK----------MPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR  156 (305)
T ss_dssp             SSCCSBCCSS----------CCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred             CCccCcCccc----------hhhhhhhhhccccchhhhhhhhhhcc-ccccccccccccccccCCCccccccccccCccc
Confidence            6666554321          12456677777777764333333332 25666666666432  33344566666666666


Q ss_pred             eeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCC
Q 002376          384 LSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING  463 (929)
Q Consensus       384 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  463 (929)
                      +++|.++. +|..+  +++|+.|++++|.+++..+..|.+++.+++|++++|.+++..+..|.++++|++|+|++|+|+ 
T Consensus       157 l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-  232 (305)
T d1xkua_         157 IADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  232 (305)
T ss_dssp             CCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             cccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-
Confidence            66666652 33322  455666666666666555666666666666666666666555555555555666666555554 


Q ss_pred             CCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCC-
Q 002376          464 NIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLS-  542 (929)
Q Consensus       464 ~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  542 (929)
                      .+        |.++..+++|++|+|++|+|+...+..|.                  .+..+..+.+|+.|+|++|.++ 
T Consensus       233 ~l--------p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~------------------~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         233 KV--------PGGLADHKYIQVVYLHNNNISAIGSNDFC------------------PPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             SC--------CTTTTTCSSCCEEECCSSCCCCCCTTSSS------------------CSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cc--------ccccccccCCCEEECCCCccCccChhhcc------------------CcchhcccCCCCEEECCCCcCcc
Confidence            12        33444445555555555555432222221                  1122334566777777777764 


Q ss_pred             -CcCCcccccCCCCCeE
Q 002376          543 -GSIPSDLQNLQALRSL  558 (929)
Q Consensus       543 -~~~p~~~~~l~~L~~L  558 (929)
                       ...|..|..+.....+
T Consensus       287 ~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         287 WEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             GGSCGGGGTTCCCGGGE
T ss_pred             CcCCHhHhcccccCccc
Confidence             2344555554444333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.4e-26  Score=240.79  Aligned_cols=227  Identities=24%  Similarity=0.278  Sum_probs=186.0

Q ss_pred             EEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEec-C
Q 002376          332 YLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA-G  410 (929)
Q Consensus       332 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~  410 (929)
                      .++.++++++ .+|..+.   ..+++|+|++|+|+...+.+|.++++|++|++++|++.+..+..+..+..++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566777776 6676543   468888888888887777788888889999998888888888888888888887764 6


Q ss_pred             CcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecC
Q 002376          411 NEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSD  490 (929)
Q Consensus       411 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~  490 (929)
                      |.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|+|++ +|       +..+..+++|+.|++++
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~-i~-------~~~f~~~~~L~~L~l~~  162 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LP-------DDTFRDLGNLTHLFLHG  162 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CC-------TTTTTTCTTCCEEECCS
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccc-cC-------hhHhccccchhhccccc
Confidence            67777778888888889999999988887777778888888889999888874 32       34566777888899999


Q ss_pred             CCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCC
Q 002376          491 NSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVP  570 (929)
Q Consensus       491 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  570 (929)
                      |++++..|..|.++++|+.+++++|++++..|..|..+++|++||+++|++++..|..|.++++|++|++++|++.+..+
T Consensus       163 N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            98888888888888999999999999988888888889999999999999988888888888889999999988887544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-25  Score=237.01  Aligned_cols=218  Identities=22%  Similarity=0.235  Sum_probs=159.9

Q ss_pred             EcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc-cccc
Q 002376           77 NLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM-ANKI  155 (929)
Q Consensus        77 ~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls-~N~l  155 (929)
                      +.++.+++ ++|..+.  +.+++|+|++|+|+...+.+|.++++|++||+++|++.+..+..+.++..++.++.+ .|.+
T Consensus        17 ~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          17 SCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             ECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            44555666 6777664  678999999999997777789999999999999999998888888888899888765 4555


Q ss_pred             CCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeecC
Q 002376          156 TGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQ  235 (929)
Q Consensus       156 ~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  235 (929)
                      + .+++..|.++++|++|++++|.+.+        +.+..+....+|+.+++++|+|+++.+..|.++++|++|+|++|+
T Consensus        94 ~-~l~~~~~~~l~~L~~L~l~~n~~~~--------~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          94 R-SVDPATFHGLGRLHTLHLDRCGLQE--------LGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             C-CCCTTTTTTCTTCCEEECTTSCCCC--------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             c-cccchhhcccccCCEEecCCccccc--------ccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            5 6777778999999999999887643        234456677888888888888888777888888888888888888


Q ss_pred             CCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccccc
Q 002376          236 LGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFN  307 (929)
Q Consensus       236 l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  307 (929)
                      |+ .+|...+..+++|+.+++++|++++..|..|.++++|++|++++|.+.+..+..|+++++|++|++++|
T Consensus       165 l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         165 IS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            87 455555555666666666666666666666666666666666666666555544444433333333333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=219.89  Aligned_cols=199  Identities=23%  Similarity=0.247  Sum_probs=108.5

Q ss_pred             ccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccC
Q 002376          355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSG  434 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  434 (929)
                      +.+++.+++.|+. +|..+.  ++|++|||++|+|++..+..|.++++|++|+|++|+|+. +| .++.           
T Consensus        12 ~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~-----------   75 (266)
T d1p9ag_          12 HLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGT-----------   75 (266)
T ss_dssp             CCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSC-----------
T ss_pred             CeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccc-----------
Confidence            4445555555553 343332  345555555555554444445555555555555555542 22 2334           


Q ss_pred             cccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeeccc
Q 002376          435 NELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAY  514 (929)
Q Consensus       435 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~  514 (929)
                                   +++|++|+|++|++++.         +..+..+++|+.|++++|.+.+..+..+..+.++++|++++
T Consensus        76 -------------l~~L~~L~Ls~N~l~~~---------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~  133 (266)
T d1p9ag_          76 -------------LPVLGTLDLSHNQLQSL---------PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG  133 (266)
T ss_dssp             -------------CTTCCEEECCSSCCSSC---------CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT
T ss_pred             -------------ccccccccccccccccc---------ccccccccccccccccccccceeeccccccccccccccccc
Confidence                         44555555555554321         22334445555555555555555555555666666666666


Q ss_pred             ccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCCcCcccCCCCCCCCCCCcccccCCCCCcC
Q 002376          515 NQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFNNLEGVVPSEGIFRNMSNVHLKGNPKLCL  591 (929)
Q Consensus       515 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~l~~l~l~~N~~~c~  591 (929)
                      |.+++..+..+..+++|+.|++++|+|++..+..|..+++|++|+|++|+|+...+.......++.+++.||||.|.
T Consensus       134 n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             cccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCC
Confidence            66665555566666666666666666666555566666666666666666663322223355666777778888773

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.1e-23  Score=215.39  Aligned_cols=193  Identities=24%  Similarity=0.253  Sum_probs=98.9

Q ss_pred             EEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccc
Q 002376           75 GLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANK  154 (929)
Q Consensus        75 ~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  154 (929)
                      ++|.++++|+ .||+.+.  ++|++|+|++|+|++..+.+|.++++|++|+|++|+|+ .+| .++.+++|++|+|++|+
T Consensus        14 ~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          14 EVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSC
T ss_pred             EEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccc
Confidence            3466666666 4565553  45666666666666554555666666666666666665 233 24455566666666666


Q ss_pred             cCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEeeec
Q 002376          155 ITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASN  234 (929)
Q Consensus       155 l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  234 (929)
                      +++ ++. .+.++++|++|++++|                                ++....+..+..+.++++|++++|
T Consensus        89 l~~-~~~-~~~~l~~L~~L~l~~~--------------------------------~~~~~~~~~~~~l~~l~~L~l~~n  134 (266)
T d1p9ag_          89 LQS-LPL-LGQTLPALTVLDVSFN--------------------------------RLTSLPLGALRGLGELQELYLKGN  134 (266)
T ss_dssp             CSS-CCC-CTTTCTTCCEEECCSS--------------------------------CCCCCCSSTTTTCTTCCEEECTTS
T ss_pred             ccc-ccc-cccccccccccccccc--------------------------------ccceeecccccccccccccccccc
Confidence            552 222 2444555555555544                                444444444444444444444444


Q ss_pred             CCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceecccccc
Q 002376          235 QLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNK  308 (929)
Q Consensus       235 ~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  308 (929)
                      .++ .+|...+..+++++.+++++|++++..+..|..+++|++|+|++|+|+ .+|+.+..+++|+.|+|++|.
T Consensus       135 ~l~-~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         135 ELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCC
T ss_pred             ccc-eeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCC
Confidence            444 333333333444444444444444444455555555666666666655 445444444444444444443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=2.4e-19  Score=196.42  Aligned_cols=179  Identities=23%  Similarity=0.295  Sum_probs=119.5

Q ss_pred             cEEEEEcCCCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceeccc
Q 002376           72 RVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLM  151 (929)
Q Consensus        72 ~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  151 (929)
                      +++.|||++++++ .+|+.   +++|++|+|++|+|+ .+|+.+   .+|+.|++++|+++ .++..   .+.|++|||+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            3568899999987 57754   468899999999998 778664   57888899999888 33321   1468999999


Q ss_pred             ccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCCCCceEEe
Q 002376          152 ANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMTSLVHLRL  231 (929)
Q Consensus       152 ~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  231 (929)
                      +|.++ .+|.  ++++++|+.|++++|.+....            .....+..+++.++...  .+..+..++.++.|++
T Consensus       107 ~n~l~-~lp~--~~~l~~L~~L~l~~~~~~~~~------------~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l  169 (353)
T d1jl5a_         107 NNQLE-KLPE--LQNSSFLKIIDVDNNSLKKLP------------DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYA  169 (353)
T ss_dssp             SSCCS-SCCC--CTTCTTCCEEECCSSCCSCCC------------CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEEC
T ss_pred             ccccc-cccc--hhhhccceeeccccccccccc------------cccccccchhhcccccc--ccccccccccceeccc
Confidence            99997 5664  678899999999988764321            12345667777666554  3456777888888888


Q ss_pred             eecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCc
Q 002376          232 ASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLE  286 (929)
Q Consensus       232 s~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  286 (929)
                      ++|.+. .++..    ......+....+.+. .++ .+..++.|+.+++++|...
T Consensus       170 ~~n~~~-~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~  217 (353)
T d1jl5a_         170 DNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  217 (353)
T ss_dssp             CSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             cccccc-ccccc----ccccccccccccccc-ccc-ccccccccccccccccccc
Confidence            888876 22221    122233444433332 222 3455666666666666554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=3.2e-19  Score=195.38  Aligned_cols=96  Identities=32%  Similarity=0.364  Sum_probs=62.0

Q ss_pred             CCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEE
Q 002376           95 SFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLN  174 (929)
Q Consensus        95 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~  174 (929)
                      .+|++|||++|.++ .+|+.   +++|++|+|++|+|+ .+|..+   .+|+.|++++|+++ .++.  +  .++|++|+
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~--l--p~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSD--L--PPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCS--C--CTTCCEEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhh--h--cccccccc
Confidence            36788999999887 57754   467888888888888 667654   46778888888876 3432  1  13466666


Q ss_pred             ccccccCCCCCccccccCCCccCCCCcccEEEeecccCC
Q 002376          175 FGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLA  213 (929)
Q Consensus       175 Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~  213 (929)
                      +++|.+.. +        | .++.+++|+.|++++|.+.
T Consensus       105 L~~n~l~~-l--------p-~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VSNNQLEK-L--------P-ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CCSSCCSS-C--------C-CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccc-c--------c-chhhhccceeecccccccc
Confidence            66665532 1        1 1344556666666665554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.1e-19  Score=183.21  Aligned_cols=213  Identities=15%  Similarity=0.118  Sum_probs=166.6

Q ss_pred             CCCCccccCCCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCc-ccccccccccceecccc-cccCC
Q 002376           80 SFGLEGTISPHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGEL-PVNISKLTELKMLDLMA-NKITG  157 (929)
Q Consensus        80 ~~~l~g~i~~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~-N~l~~  157 (929)
                      +.+++ .+|+.+.  +++++|||++|+|+...+.+|.++++|++|+|++|.+...+ +..|.+++++++|++.. |.+. 
T Consensus        17 ~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-   92 (242)
T d1xwdc1          17 ESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-   92 (242)
T ss_dssp             SCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-
T ss_pred             CCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-
Confidence            34555 6777664  58999999999999666678999999999999999998755 45788999999999865 6776 


Q ss_pred             CCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCccCCccccCC-CCceEEeeecCC
Q 002376          158 RVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTVPSTIYNMT-SLVHLRLASNQL  236 (929)
Q Consensus       158 ~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l  236 (929)
                      .+++..|.++++|++|++++|.+....+       ...+..+..+..+..+++++..+.+..|.+++ .++.|++++|++
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~-------~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPD-------VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCC-------CTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccccccchhhhccccc-------ccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            5677779999999999999998753211       12345677888888888899888888888775 789999999999


Q ss_pred             CCcCCcccccCCCCccee-eccCCcCCCCCCCcccccccccEEeccCccCcCCccCCCCCCCccceeccc
Q 002376          237 GGEIPYDVRDTLPNLLDF-IYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIG  305 (929)
Q Consensus       237 ~~~ip~~~~~~l~~L~~l-~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  305 (929)
                      + .++..++. .+++.++ ++.+|+++...+..|.++++|++|+|++|+|+...+..|.++++|+.+++.
T Consensus       166 ~-~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         166 Q-EIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             C-EECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             c-cccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            8 67777766 4555544 567777876666678888999999999999886656678888888777663

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.2e-18  Score=178.28  Aligned_cols=87  Identities=20%  Similarity=0.252  Sum_probs=55.9

Q ss_pred             CcccEEEeecccCCCccCCccccCCCCceEEeeecCCCCcCCcccccCCCCcceeecc-CCcCCCCCCCcccccccccEE
Q 002376          200 ENLKVLDLTINRLAGTVPSTIYNMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYC-FNRFTGKIPGSLHNLTNIQII  278 (929)
Q Consensus       200 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~-~N~l~~~~p~~~~~l~~L~~L  278 (929)
                      +++++|||++|+|+.+.+.+|.++++|++|+|++|.+...++...+..+++++++.+. .|++....+..|.++++|+.+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3567777777777766666677777777777777777655665555556666665543 345555555556666666666


Q ss_pred             eccCccCc
Q 002376          279 RMTHNLLE  286 (929)
Q Consensus       279 ~Ls~N~l~  286 (929)
                      ++++|.+.
T Consensus       109 ~l~~~~l~  116 (242)
T d1xwdc1         109 LISNTGIK  116 (242)
T ss_dssp             EEESCCCC
T ss_pred             ccchhhhc
Confidence            66666655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=2.3e-19  Score=183.92  Aligned_cols=149  Identities=23%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             cccccccEEeccCccCcCCccCCCCCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCccccccCchhh
Q 002376          270 HNLTNIQIIRMTHNLLEGTLPPGLGNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKIPESIG  349 (929)
Q Consensus       270 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  349 (929)
                      ..+++|+.|++++|.+++..|  +..+++|+++++++|.++.+         ..+.++++|++++++++...+..+  +.
T Consensus        60 ~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i---------~~l~~l~~L~~l~l~~~~~~~~~~--~~  126 (227)
T d1h6ua2          60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV---------SAIAGLQSIKTLDLTSTQITDVTP--LA  126 (227)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC---------GGGTTCTTCCEEECTTSCCCCCGG--GT
T ss_pred             hcCCCCcEeecCCceeecccc--cccccccccccccccccccc---------ccccccccccccccccccccccch--hc
Confidence            334444444444444443222  34444444444444443322         233445555555555555442211  11


Q ss_pred             hccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCce
Q 002376          350 NFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQ  429 (929)
Q Consensus       350 ~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  429 (929)
                      ... .+..+.++.+.+....  .+.++++|++|++++|.+++..  .++++++|++|+|++|++++. + .+.++++|++
T Consensus       127 ~~~-~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~  199 (227)
T d1h6ua2         127 GLS-NLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIE  199 (227)
T ss_dssp             TCT-TCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCE
T ss_pred             ccc-chhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCE
Confidence            122 3444444444443221  2334444444444444443221  134444444444444444431 1 1344444444


Q ss_pred             ecccCcccc
Q 002376          430 IDLSGNELT  438 (929)
Q Consensus       430 L~Ls~N~l~  438 (929)
                      |+|++|+++
T Consensus       200 L~Ls~N~lt  208 (227)
T d1h6ua2         200 VHLKNNQIS  208 (227)
T ss_dssp             EECTTSCCC
T ss_pred             EECcCCcCC
Confidence            444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.77  E-value=1.8e-18  Score=177.06  Aligned_cols=201  Identities=22%  Similarity=0.312  Sum_probs=134.6

Q ss_pred             EccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcC
Q 002376          334 ALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI  413 (929)
Q Consensus       334 ~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  413 (929)
                      +++.+++++.++  +..+. +|+.|++++|.|+..  ..+..+++|++|++++|++++..|  +..+++|+++++++|.+
T Consensus        25 ~l~~~~~~d~~~--~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~   97 (227)
T d1h6ua2          25 AAGKSNVTDTVT--QADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL   97 (227)
T ss_dssp             HTTCSSTTSEEC--HHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred             HhCCCCcCCcCC--HHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence            444455554332  23343 577777777777643  346777777777777777765433  67777777777777777


Q ss_pred             CCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCC
Q 002376          414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL  493 (929)
Q Consensus       414 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l  493 (929)
                      +. ++ .+.++++|+.+++++|...+..  .+...+.++.+.++++.+..          ...+...++|+.|++++|.+
T Consensus        98 ~~-i~-~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~L~~L~l~~n~~  163 (227)
T d1h6ua2          98 KN-VS-AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITN----------ISPLAGLTNLQYLSIGNAQV  163 (227)
T ss_dssp             SC-CG-GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCC----------CGGGGGCTTCCEEECCSSCC
T ss_pred             cc-cc-cccccccccccccccccccccc--hhccccchhhhhchhhhhch----------hhhhcccccccccccccccc
Confidence            63 32 4667777777777777766432  24556677777777777653          22355667788888888877


Q ss_pred             CCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCC
Q 002376          494 SGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLT  561 (929)
Q Consensus       494 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  561 (929)
                      ++..  .++++++|++|+|++|++++. + .++.+++|++|+|++|++++. | .+.++++|+.|+++
T Consensus       164 ~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         164 SDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             ccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEee
Confidence            6432  377788888888888888753 3 377788888888888888754 3 37788888888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.4e-21  Score=220.63  Aligned_cols=109  Identities=23%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             cccEEEecCCcccc-----ccCCCCCCCCcccEEEeeCCCCCccc----CccccCCCCCCEEEecCCcCCCCCcccc---
Q 002376          354 ELSKLYLGGNHIYG-----KIPASIGRLRSLTLLDLSYNSISGEI----PIEIGQLQGLQVLGLAGNEIPGGIPNSL---  421 (929)
Q Consensus       354 ~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~---  421 (929)
                      .++.+++++|++..     ..+..+.....++.+++++|.+....    ...+...+.++.+++++|.++......+   
T Consensus       227 ~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~  306 (460)
T d1z7xw1         227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  306 (460)
T ss_dssp             TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             cccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            45555555554421     12223334455666666666654321    1223345555666666665542111111   


Q ss_pred             --cCCCCCceecccCcccccccCcc----cccccccceecccCCcCC
Q 002376          422 --ANLKKLNQIDLSGNELTGEIPIS----FGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       422 --~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~Ls~N~l~  462 (929)
                        .....|+.+++++|.++......    +...++|+.|+|++|+|+
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhhhheeeeccc
Confidence              12234555555555554322111    222334555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.3e-21  Score=220.71  Aligned_cols=394  Identities=18%  Similarity=0.148  Sum_probs=217.4

Q ss_pred             cccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCcc----CC
Q 002376          143 TELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV----PS  218 (929)
Q Consensus       143 ~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~----p~  218 (929)
                      .+|++||+++|++++.--...+..+++|++|+|++|.++..-   + ..++..+..+++|+.|||++|+|+...    ..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~---~-~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEAR---C-KDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHH---H-HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHH---H-HHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            468888888888874221334566777888888887654210   0 112334556677777777777765321    12


Q ss_pred             ccc-cCCCCceEEeeecCCCCcCCcccccCCCCcceeeccCCcCCCCCCCcccccccccEEeccCccCcCCccCCC----
Q 002376          219 TIY-NMTSLVHLRLASNQLGGEIPYDVRDTLPNLLDFIYCFNRFTGKIPGSLHNLTNIQIIRMTHNLLEGTLPPGL----  293 (929)
Q Consensus       219 ~~~-~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~l~l~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----  293 (929)
                      .+. ...+|++|+|++|+++..--.                     .++..+..+++|++|++++|.++......+    
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~---------------------~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l  136 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCG---------------------VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL  136 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHH---------------------HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEECCCCCccccccc---------------------cccchhhccccccccccccccchhhhhhhhhhcc
Confidence            222 224566666666666521100                     123344555666666666666653211110    


Q ss_pred             -CCCCccceeccccccccCCCCCCCCccccccCCCCCCCEEEccCCcccccc----CchhhhccccccEEEecCCccccc
Q 002376          294 -GNLPFLRTYNIGFNKIVSSGDDEGLSFITSLTNSTHLNYLALDGNQFEGKI----PESIGNFSNELSKLYLGGNHIYGK  368 (929)
Q Consensus       294 -~~l~~L~~L~L~~N~i~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~~~~~L~~L~Ls~N~l~~~  368 (929)
                       ...............+....   .......+.....++.++++++.+....    ...+.........+++..+.+...
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  213 (460)
T d1z7xw1         137 LDPQCRLEKLQLEYCSLSAAS---CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD  213 (460)
T ss_dssp             TSTTCCCCEEECTTSCCBGGG---HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             cccccccccccccccccchhh---hcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence             00111111111111111000   0001122344567788888887765221    111222222456777777765421


Q ss_pred             ----cCCCCCCCCcccEEEeeCCCCCcc-----cCccccCCCCCCEEEecCCcCCCC----CcccccCCCCCceecccCc
Q 002376          369 ----IPASIGRLRSLTLLDLSYNSISGE-----IPIEIGQLQGLQVLGLAGNEIPGG----IPNSLANLKKLNQIDLSGN  435 (929)
Q Consensus       369 ----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N  435 (929)
                          ....+...+.++.+++++|.+...     .+........++.+++++|.+...    ....+...+.++.+++++|
T Consensus       214 ~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n  293 (460)
T d1z7xw1         214 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  293 (460)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             hhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence                112234567788899988876432     233344567788899998887643    2234556778888888888


Q ss_pred             ccccccCccc-----ccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCC----CCcchh-cCc
Q 002376          436 ELTGEIPISF-----GNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN----LPNSLK-NCK  505 (929)
Q Consensus       436 ~l~~~~p~~~-----~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~----~p~~~~-~l~  505 (929)
                      .++......+     .....|+.+++++|.++..-    ...+...+....+|++|||++|++++.    ++..+. ..+
T Consensus       294 ~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~----~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~  369 (460)
T d1z7xw1         294 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC----CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGS  369 (460)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             cccccccchhhccccccccccccccccccchhhhh----hhhcccccccccchhhhheeeecccCcccchhhhhhhcccC
Confidence            8864322221     22356888888888876321    111122334556788888888887642    223332 356


Q ss_pred             Ccceeeccccccccc----CCccccCCCCCCEEECCCCcCCCcCCccc----c-cCCCCCeEeCCCCcCccc
Q 002376          506 SLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNKLSGSIPSDL----Q-NLQALRSLNLTFNNLEGV  568 (929)
Q Consensus       506 ~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~----~-~l~~L~~L~Ls~N~l~~~  568 (929)
                      .|++|+|++|+|+..    ++..+..+++|++|||++|+|+......+    . +...|+.|++.+|.+...
T Consensus       370 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~  441 (460)
T d1z7xw1         370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE  441 (460)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred             CCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHH
Confidence            688888888888642    44556667888888888888875322222    1 334688888888877643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=9.7e-19  Score=173.98  Aligned_cols=175  Identities=21%  Similarity=0.266  Sum_probs=117.4

Q ss_pred             EEEecCCcCCCCCcccccCCCCCceecccCcccccc-cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCc
Q 002376          405 VLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGE-IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENV  483 (929)
Q Consensus       405 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L  483 (929)
                      +++.++|+++ .+|..+.  +++++|+|++|+|++. .+..|.++++|+.|+|++|++++..        +..+..+++|
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~--------~~~~~~~~~L   80 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE--------PNAFEGASHI   80 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC--------TTTTTTCTTC
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc--------cccccccccc
Confidence            4444444444 2333222  3556666666666542 3445566666666666666665432        4455556677


Q ss_pred             cEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCCCCeEeCCCC
Q 002376          484 VTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       484 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      ++|+|++|++++..|..|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+....+.. .-...++.+.+..|
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCC
Confidence            77777777777777778888888888888888888888888888899999999999887543221 11233566778888


Q ss_pred             cCcccCCCCCCCCCCCcccccCCCCCcCCC
Q 002376          564 NLEGVVPSEGIFRNMSNVHLKGNPKLCLQL  593 (929)
Q Consensus       564 ~l~~~~p~~~~~~~l~~l~l~~N~~~c~~~  593 (929)
                      .+++..|..  ++.++..+++.|...|..+
T Consensus       160 ~~~c~~p~~--l~~~~l~~L~~n~l~C~~~  187 (192)
T d1w8aa_         160 AARCGAPSK--VRDVQIKDLPHSEFKCSSE  187 (192)
T ss_dssp             GCBBCSSTT--TTTSBGGGSCTTTCCCCCC
T ss_pred             CeEeCCChh--hcCCEeeecCHhhCcCCCC
Confidence            888777743  6677778888888888554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=4.9e-18  Score=171.39  Aligned_cols=163  Identities=28%  Similarity=0.358  Sum_probs=81.4

Q ss_pred             CcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecc
Q 002376          377 RSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDL  456 (929)
Q Consensus       377 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  456 (929)
                      .+|++|++++|.++...  .+..+++|++|++++|+|++..  .++++++|++|++++|++++ +| .+.++++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccccc
Confidence            33444444444443221  1344444444444444444322  13444455555555555543 22 2444555555555


Q ss_pred             cCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEEC
Q 002376          457 SNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDL  536 (929)
Q Consensus       457 s~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  536 (929)
                      ++|.+..          ...+..++.++.+++++|.+++  +..+..+++|+.+++++|++++..+  ++++++|+.|+|
T Consensus       120 ~~~~~~~----------~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~--l~~l~~L~~L~L  185 (210)
T d1h6ta2         120 EHNGISD----------INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  185 (210)
T ss_dssp             TTSCCCC----------CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             ccccccc----------cccccccccccccccccccccc--ccccccccccccccccccccccccc--ccCCCCCCEEEC
Confidence            5554431          1234445555555555555543  2234555666666666666654322  556666666666


Q ss_pred             CCCcCCCcCCcccccCCCCCeEeCC
Q 002376          537 SSNKLSGSIPSDLQNLQALRSLNLT  561 (929)
Q Consensus       537 s~N~l~~~~p~~~~~l~~L~~L~Ls  561 (929)
                      ++|+++. +| .+.++++|++|+|+
T Consensus       186 s~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         186 SKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             CCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            6666653 33 46666666666664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1.6e-18  Score=172.38  Aligned_cols=129  Identities=26%  Similarity=0.366  Sum_probs=95.7

Q ss_pred             CEEEccCCccccccCchhhhccccccEEEecCCccccc-cCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEec
Q 002376          331 NYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGK-IPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLA  409 (929)
Q Consensus       331 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  409 (929)
                      +.++.++|+++ .+|..+.   .++++|+|++|+|++. .+..|.++++|++|+|++|++.+..+..|..+++|++|+|+
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            46777777777 6676543   3677888888888653 35566777888888888888877777777777777778887


Q ss_pred             CCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCC
Q 002376          410 GNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRING  463 (929)
Q Consensus       410 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  463 (929)
                      +|+|++..|.+|.++++|++|+|++|+|++..|.+|..+++|++|+|++|.+..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            777777777777777777777777777777777777777777777777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.2e-17  Score=168.45  Aligned_cols=180  Identities=27%  Similarity=0.374  Sum_probs=141.9

Q ss_pred             EccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcC
Q 002376          334 ALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI  413 (929)
Q Consensus       334 ~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  413 (929)
                      .+..+.+++.++..  .+. +|+.|++++|.++...  .+..+++|++|+|++|+|++..  .++.+++|++|++++|+|
T Consensus        30 ~l~~~~~~~~~~~~--~L~-~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i  102 (210)
T d1h6ta2          30 NLKKKSVTDAVTQN--ELN-SIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKV  102 (210)
T ss_dssp             HTTCSCTTSEECHH--HHH-TCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             HhCcCccCCccCHH--Hhc-CccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccc
Confidence            45556666555532  333 6888888888887542  3778889999999999998643  367889999999999998


Q ss_pred             CCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCC
Q 002376          414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL  493 (929)
Q Consensus       414 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l  493 (929)
                      ++ +| .+.++++|+.|++++|.+.. + ..+..+++++.+++++|.+++          +..+..+++|+.+++++|++
T Consensus       103 ~~-l~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~----------~~~~~~l~~L~~l~l~~n~l  168 (210)
T d1h6ta2         103 KD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQI  168 (210)
T ss_dssp             CC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCC
T ss_pred             cc-cc-cccccccccccccccccccc-c-ccccccccccccccccccccc----------cccccccccccccccccccc
Confidence            85 44 58888999999999998863 2 357888899999999999874          34567788999999999999


Q ss_pred             CCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCC
Q 002376          494 SGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSS  538 (929)
Q Consensus       494 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  538 (929)
                      ++. + .+.++++|+.|+|++|+|+. +| .+..+++|++|+|++
T Consensus       169 ~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         169 SDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            864 3 38899999999999999985 45 589999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.4e-17  Score=163.61  Aligned_cols=162  Identities=31%  Similarity=0.416  Sum_probs=99.3

Q ss_pred             CCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCccccccccccee
Q 002376          375 RLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSI  454 (929)
Q Consensus       375 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  454 (929)
                      .++++++|++++|.++..  ..+..+++|++|++++|++++..|  ++++++|++|++++|.+... + .+.++++|+.|
T Consensus        38 ~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccc
Confidence            345555555555555532  234556666666666666654332  56666666666666666532 2 25566666666


Q ss_pred             cccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEE
Q 002376          455 DLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL  534 (929)
Q Consensus       455 ~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  534 (929)
                      ++++|.+..          ...+..+++|+.|++++|++.. +| .+..+++|++|++++|++++..  .++++++|++|
T Consensus       112 ~l~~~~~~~----------~~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l~--~l~~l~~L~~L  177 (199)
T d2omxa2         112 TLFNNQITD----------IDPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDLK--PLANLTTLERL  177 (199)
T ss_dssp             ECCSSCCCC----------CGGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             ccccccccc----------ccccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCCc--cccCCCCCCEE
Confidence            666666543          1234556667777777777653 22 4667777777777777777543  36777888888


Q ss_pred             ECCCCcCCCcCCcccccCCCCCeE
Q 002376          535 DLSSNKLSGSIPSDLQNLQALRSL  558 (929)
Q Consensus       535 ~Ls~N~l~~~~p~~~~~l~~L~~L  558 (929)
                      ++++|++++ ++ .+.++++|++|
T Consensus       178 ~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             ECCCCCCCC-Cc-cccCCCCCCcC
Confidence            888888774 33 46777777765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=5.3e-17  Score=162.22  Aligned_cols=176  Identities=25%  Similarity=0.359  Sum_probs=127.0

Q ss_pred             EccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcC
Q 002376          334 ALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEI  413 (929)
Q Consensus       334 ~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l  413 (929)
                      .++.+.+++.++.  ..+. ++++|++++|.|+..  +.+..+++|++|+|++|++++..|  ++++++|++|++++|.+
T Consensus        24 ~l~~~~~~~~~~~--~~l~-~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          24 VLGKTNVTDTVSQ--TDLD-QVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HTTCSSTTSEECH--HHHT-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HhCCCCCCCccCH--HHhc-CCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            4555555544432  2333 677777777777643  346777888888888888876443  77888888888888887


Q ss_pred             CCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCC
Q 002376          414 PGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSL  493 (929)
Q Consensus       414 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l  493 (929)
                      ... + .+.+++.|+.|++++|.+...  ..+..+++|+.|++++|++..          .+.+..+++|+.|++++|++
T Consensus        97 ~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~----------~~~l~~~~~L~~L~l~~n~l  162 (199)
T d2omxa2          97 ADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD----------ISALSGLTSLQQLNFSSNQV  162 (199)
T ss_dssp             CCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC----------CGGGTTCTTCSEEECCSSCC
T ss_pred             ccc-c-ccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc----------cccccccccccccccccccc
Confidence            643 3 377888888888888887643  346778888888888888753          23467778888888888888


Q ss_pred             CCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEE
Q 002376          494 SGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVL  534 (929)
Q Consensus       494 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  534 (929)
                      ++. + .++++++|++|++++|++++ ++ .++.+++|+.|
T Consensus       163 ~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         163 TDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            864 2 47888899999999998885 33 47788888876

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.69  E-value=1.2e-17  Score=165.86  Aligned_cols=116  Identities=19%  Similarity=0.149  Sum_probs=91.7

Q ss_pred             CCceeecccCceeEEeccccCc---------------------------------HHHHHHHHHHHHccCCccccceeee
Q 002376          664 SHENLIGSGSFGSVLHNERTGS---------------------------------WKSFIAECETLRNVRHRNLVKLITS  710 (929)
Q Consensus       664 ~~~~~iG~G~~g~Vy~~~~~~~---------------------------------~~~~~~E~~~l~~l~Hpniv~l~~~  710 (929)
                      ...++||+|+||+||+|+....                                 ...+.+|...+.++.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            3568999999999999875410                                 1234468889999999999988876


Q ss_pred             cccCCCCCcceEEEEEEecCCCCcccccc-ccccccccHHHHHHHhhhCCCCCEEecCCCCCCeeecCCCceEEeccccc
Q 002376          711 CSSLDSKNMEFLALVYEFLSNGSLGDWIH-GERKNELDITSALDYLHNDCEVPVVHSDLKPGNILLDEEMTAKVGDFGLA  789 (929)
Q Consensus       711 ~~~~~~~~~~~~~lV~e~~~~gsL~~~l~-~~~~~~~~ia~aL~yLH~~~~~~iiHrDlk~~NILl~~~~~~ki~DfGla  789 (929)
                      ..         .++||||++++.+.+.-. ....++.|++.|++|||+.   +|+||||||+|||++++ .++++|||.|
T Consensus        83 ~~---------~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~---giiHrDiKP~NILv~~~-~~~liDFG~a  149 (191)
T d1zara2          83 EG---------NAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLVSEE-GIWIIDFPQS  149 (191)
T ss_dssp             ET---------TEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEETT-EEEECCCTTC
T ss_pred             cC---------CEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhC---CEEEccCChhheeeeCC-CEEEEECCCc
Confidence            41         379999998876655432 2234578999999999998   99999999999999976 4899999999


Q ss_pred             ccc
Q 002376          790 RFL  792 (929)
Q Consensus       790 ~~~  792 (929)
                      +..
T Consensus       150 ~~~  152 (191)
T d1zara2         150 VEV  152 (191)
T ss_dssp             EET
T ss_pred             ccC
Confidence            764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=1.8e-14  Score=131.04  Aligned_cols=101  Identities=30%  Similarity=0.389  Sum_probs=49.8

Q ss_pred             EEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCCCCcEEEccccccCCCCCccccccCCCccCCCCcc
Q 002376          123 VLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENL  202 (929)
Q Consensus       123 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L  202 (929)
                      +|||++|+|+ .++ .+.++++|++||+++|+|+ .+|+. |..+++|++|++++|++++         +| .+..+++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~-~~~l~~L~~L~l~~N~i~~---------l~-~~~~l~~L   67 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPA-LAALRCLEVLQASDNALEN---------VD-GVANLPRL   67 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGG-GGGCTTCCEEECCSSCCCC---------CG-GGTTCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhh-hhhhhcccccccccccccc---------cC-cccccccc
Confidence            4445555554 222 2444555555555555554 34433 4445555555555554422         01 23445555


Q ss_pred             cEEEeecccCCCcc-CCccccCCCCceEEeeecCCC
Q 002376          203 KVLDLTINRLAGTV-PSTIYNMTSLVHLRLASNQLG  237 (929)
Q Consensus       203 ~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~  237 (929)
                      ++|++++|+|+... ...+..+++|++|++++|.++
T Consensus        68 ~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          68 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            55555555555432 234556666666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.3e-15  Score=142.29  Aligned_cols=131  Identities=22%  Similarity=0.257  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCEEEeecCCCCCCCCcCCCCCCCCcEEeCCCCCCCCCcccccccccccceecccccccCCCCChhhhccCC
Q 002376           89 PHIGNLSFLRSIQLQNNKLSGNLPREIGNLFRLRVLNISFNNLQGELPVNISKLTELKMLDLMANKITGRVTDDQLRNLR  168 (929)
Q Consensus        89 ~~l~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~  168 (929)
                      +.+.+...|++|||++|+|+ .+|..+..+++|++||||+|+|+. ++ .|..+++|++|+|++|+|+ .+++..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhccccccc-CCCcccccccc
Confidence            34567777888888888887 446666778888888888888873 43 4778888888888888887 56666567788


Q ss_pred             CCcEEEccccccCCCCCccccccCCCccCCCCcccEEEeecccCCCcc---CCccccCCCCceEE
Q 002376          169 SLQVLNFGKNLLWGSIPPSIANLIPSDLSRLENLKVLDLTINRLAGTV---PSTIYNMTSLVHLR  230 (929)
Q Consensus       169 ~L~~L~Ls~N~l~~~~p~~i~~l~p~~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~  230 (929)
                      +|+.|++++|++..     +..+  ..+..+++|++|++++|.++...   +..+..+++|+.||
T Consensus        88 ~L~~L~L~~N~i~~-----~~~l--~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVE-----LGDL--DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCC-----GGGG--GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccc-----cccc--cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888888887642     1111  23556677777777777765322   12355566666665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.47  E-value=8.8e-16  Score=167.38  Aligned_cols=190  Identities=22%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             CCCCcccEEEeeCCCCCcc----cCccccCCCCCCEEEecCCcCCCCCcc-------------cccCCCCCceecccCcc
Q 002376          374 GRLRSLTLLDLSYNSISGE----IPIEIGQLQGLQVLGLAGNEIPGGIPN-------------SLANLKKLNQIDLSGNE  436 (929)
Q Consensus       374 ~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~-------------~~~~l~~L~~L~Ls~N~  436 (929)
                      ...++|+.|+|++|.+...    +...+...++|+.|++++|.+...-..             .....+.|+.+++++|+
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~  169 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR  169 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccc
Confidence            3345555555555555432    222233445555555555554311000             01233455555666555


Q ss_pred             cccc----cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCC----CCcchhcCcCcc
Q 002376          437 LTGE----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN----LPNSLKNCKSLE  508 (929)
Q Consensus       437 l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~  508 (929)
                      ++..    +...+...+.|+.|+|++|.|+..   +....+...+...++|+.|||++|.++..    +...+..+++|+
T Consensus       170 i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~---g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         170 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             ccccccccccchhhhhhhhccccccccccccc---ccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            5421    122233445566666666655411   00000112233445566666666655321    223345556666


Q ss_pred             eeecccccccccCC----ccccC--CCCCCEEECCCCcCCCc----CCcccc-cCCCCCeEeCCCCcCc
Q 002376          509 ELLMAYNQFSGPIP----NIVAE--LKGLEVLDLSSNKLSGS----IPSDLQ-NLQALRSLNLTFNNLE  566 (929)
Q Consensus       509 ~L~Ls~N~l~~~~p----~~~~~--l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~  566 (929)
                      +|+|++|.|++.-.    ..+..  .+.|++||+++|+++..    +...+. +++.|+.|+|++|++.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            66666666654311    12222  24566666666666532    122221 3556666666666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.9e-14  Score=135.44  Aligned_cols=128  Identities=21%  Similarity=0.139  Sum_probs=88.0

Q ss_pred             ccCCCCCCCEEEccCCccccccCchhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCC
Q 002376          323 SLTNSTHLNYLALDGNQFEGKIPESIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQG  402 (929)
Q Consensus       323 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  402 (929)
                      .+.+..++++|+|++|+|+ .+|..+..+. +|+.|+|++|+|+..  +.|..+++|++|++++|+++...+..+..+++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIP-VIENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCC-SCCCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCC-ccCccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccc
Confidence            3556677788888888887 4555444454 688888888888744  34777888888888888887655555667788


Q ss_pred             CCEEEecCCcCCCCCc-ccccCCCCCceecccCcccccccCc----ccccccccceec
Q 002376          403 LQVLGLAGNEIPGGIP-NSLANLKKLNQIDLSGNELTGEIPI----SFGNFQSLLSID  455 (929)
Q Consensus       403 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~  455 (929)
                      |+.|++++|+|+.... ..+..+++|++|++++|.++. .|.    .+..+++|++||
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            8888888888764322 356677777777777777763 232    355566666666

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=1.2e-13  Score=125.55  Aligned_cols=18  Identities=28%  Similarity=0.403  Sum_probs=7.8

Q ss_pred             ccCCCCCCEEECCCCcCC
Q 002376          525 VAELKGLEVLDLSSNKLS  542 (929)
Q Consensus       525 ~~~l~~L~~L~Ls~N~l~  542 (929)
                      ++.+++|++|++++|+++
T Consensus        86 l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GGGCTTCCEEECTTSGGG
T ss_pred             hcCCCCCCEEECCCCcCC
Confidence            344444444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.1e-14  Score=150.15  Aligned_cols=201  Identities=18%  Similarity=0.196  Sum_probs=98.6

Q ss_pred             ccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcc-cCccccCCCCCCEEEecCCcCCCCCcccccCCCCCceeccc
Q 002376          355 LSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGE-IPIEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLS  433 (929)
Q Consensus       355 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  433 (929)
                      +..+.++...+..... ......+|++|||+++.+++. ++..+..+++|++|+|+++.+++..+..++.+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            3444444444332222 222334566666666655432 23334555666666666666655555555666666666666


Q ss_pred             Cc-ccccc-cCcccccccccceecccCC-cCCCCCCCCcccCCchhhhc-ccCccEEEecCC--CCCCC-CCcchhcCcC
Q 002376          434 GN-ELTGE-IPISFGNFQSLLSIDLSNN-RINGNIPKGILRPLPEEISR-LENVVTIDLSDN--SLSGN-LPNSLKNCKS  506 (929)
Q Consensus       434 ~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~g~i~~~~~~~~p~~~~~-l~~L~~LdLs~N--~l~~~-~p~~~~~l~~  506 (929)
                      ++ .++.. +...+.++++|++|+++++ .++..       .++..+.. .++|+.|++++.  .++.. +...+.++++
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~  176 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK-------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN  176 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred             ccccccccccchhhHHHHhccccccccccccccc-------cchhhhcccccccchhhhccccccccccccccccccccc
Confidence            53 34321 1111234556666666653 23210       00111222 245666666543  22211 1222344566


Q ss_pred             cceeecccc-cccccCCccccCCCCCCEEECCCC-cCCCcCCcccccCCCCCeEeCCCC
Q 002376          507 LEELLMAYN-QFSGPIPNIVAELKGLEVLDLSSN-KLSGSIPSDLQNLQALRSLNLTFN  563 (929)
Q Consensus       507 L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N  563 (929)
                      |++|++++| .+++.....+..+++|++|+|+++ .+++.....+.++++|+.|+++++
T Consensus       177 L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         177 LVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            666666654 355555555566666666666663 455444445556666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.5e-15  Score=157.61  Aligned_cols=61  Identities=28%  Similarity=0.251  Sum_probs=30.1

Q ss_pred             CCCcccEEEeeCC-CCCcccCccccCCCCCCEEEecC-CcCCCCCcccccCCCCCceecccCc
Q 002376          375 RLRSLTLLDLSYN-SISGEIPIEIGQLQGLQVLGLAG-NEIPGGIPNSLANLKKLNQIDLSGN  435 (929)
Q Consensus       375 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls~N  435 (929)
                      ++++|++|+|++| .+++.....+..+++|++|+|++ +.+++.....++++++|+.|+++++
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            3445555555543 24444444455555555555555 2344433444455555555555554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.41  E-value=6.4e-15  Score=160.45  Aligned_cols=261  Identities=18%  Similarity=0.227  Sum_probs=124.2

Q ss_pred             CcccccccccEEeccCccCcCC----ccCCCCCCCccceeccccccccCCCCCC---CCccccccCCCCCCCEEEccCCc
Q 002376          267 GSLHNLTNIQIIRMTHNLLEGT----LPPGLGNLPFLRTYNIGFNKIVSSGDDE---GLSFITSLTNSTHLNYLALDGNQ  339 (929)
Q Consensus       267 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~i~~~~~~~---~~~~~~~~~~l~~L~~L~Ls~N~  339 (929)
                      ..+.+..+|+.|+|++|.|...    +...+...++|+.++++++.+.......   ...+...+...++|+.|+|++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3455566777777777776432    2334555566666666555432211100   00111234445566666666666


Q ss_pred             cccccCc----hhhhccccccEEEecCCccccccCCCCCCCCcccEEEeeCCCCCcccCccccCCCCCCEEEecCCcCCC
Q 002376          340 FEGKIPE----SIGNFSNELSKLYLGGNHIYGKIPASIGRLRSLTLLDLSYNSISGEIPIEIGQLQGLQVLGLAGNEIPG  415 (929)
Q Consensus       340 l~~~~p~----~~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  415 (929)
                      ++..-..    .+...+ +|+.|++++|.+.......++.  .|..+         .........+.|+.+++++|+++.
T Consensus       105 i~~~~~~~l~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHT-PLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             CCTTTHHHHHHHHHHCT-TCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             cccccccchhhhhcccc-cchheecccccccccccccccc--ccccc---------ccccccccCcccceeecccccccc
Confidence            5532111    111222 4555555555442110000000  00000         000001223445555555555432


Q ss_pred             C----CcccccCCCCCceecccCcccccc-----cCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEE
Q 002376          416 G----IPNSLANLKKLNQIDLSGNELTGE-----IPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTI  486 (929)
Q Consensus       416 ~----~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~L  486 (929)
                      .    +...+...+.|+.|+|++|+++..     +...+..+++|+.|+|++|.++..-    ...+...+...++|++|
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g----~~~L~~~l~~~~~L~~L  248 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLREL  248 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEE
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccc----cccccccccccccchhh
Confidence            1    122234445566666666665421     2233455566666666666654210    01112344556667777


Q ss_pred             EecCCCCCCCCCcc----hhc--CcCcceeeccccccccc----CCcccc-CCCCCCEEECCCCcCCC
Q 002376          487 DLSDNSLSGNLPNS----LKN--CKSLEELLMAYNQFSGP----IPNIVA-ELKGLEVLDLSSNKLSG  543 (929)
Q Consensus       487 dLs~N~l~~~~p~~----~~~--l~~L~~L~Ls~N~l~~~----~p~~~~-~l~~L~~L~Ls~N~l~~  543 (929)
                      +|++|.+++.-...    +..  ...|++|++++|+|+..    +...+. ++++|+.|+|++|++..
T Consensus       249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            77777665432222    222  35688888888887642    233332 56789999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.34  E-value=2.3e-14  Score=142.04  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             ccccCCCCCCEEEecCCcCCCCCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCC
Q 002376          395 IEIGQLQGLQVLGLAGNEIPGGIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRIN  462 (929)
Q Consensus       395 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  462 (929)
                      ..+..+++|++|+|++|+|+. ++ .+.++++|++|+|++|+++ .+|..+..+++|+.|++++|+|+
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~  106 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA  106 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC
T ss_pred             hHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc
Confidence            344555555555555555543 22 2445555555555555554 23333333344555555555443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.3e-13  Score=126.02  Aligned_cols=108  Identities=24%  Similarity=0.230  Sum_probs=89.9

Q ss_pred             CCCcceeeCCCCCcEEEEEcCCCCCccccCCCCCCCCCCCEEEeecC-CCCCCCCcCCCCCCCCcEEeCCCCCCCCCccc
Q 002376           59 CTWPGVICNNFGNRVIGLNLSSFGLEGTISPHIGNLSFLRSIQLQNN-KLSGNLPREIGNLFRLRVLNISFNNLQGELPV  137 (929)
Q Consensus        59 c~w~gv~c~~~~~~v~~l~l~~~~l~g~i~~~l~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  137 (929)
                      +.+++++|...            ++. .+|..+..+++|++|++++| .++...+.+|.++++|+.|+|++|+|+.+.|.
T Consensus         8 ~~~~~l~c~~~------------~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3           8 HGSSGLRCTRD------------GAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             SSSSCEECCSS------------CCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CCCCeEEecCC------------CCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence            34666777543            333 56778889999999999876 58877778899999999999999999988888


Q ss_pred             ccccccccceecccccccCCCCChhhhccCCCCcEEEccccccC
Q 002376          138 NISKLTELKMLDLMANKITGRVTDDQLRNLRSLQVLNFGKNLLW  181 (929)
Q Consensus       138 ~~~~l~~L~~L~Ls~N~l~~~i~~~~~~~l~~L~~L~Ls~N~l~  181 (929)
                      .|..+++|++|||++|+|+ .+|.+.|..+ +|+.|+|++|.+.
T Consensus        75 ~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          75 AFHFTPRLSRLNLSFNALE-SLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             GGGSCSCCCEEECCSSCCS-CCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cccccccccceeccCCCCc-ccChhhhccc-cccccccCCCccc
Confidence            9999999999999999998 7888877665 6999999999773

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=6.2e-14  Score=138.95  Aligned_cols=131  Identities=24%  Similarity=0.322  Sum_probs=104.3

Q ss_pred             CCcccccCCCCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCC
Q 002376          416 GIPNSLANLKKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSG  495 (929)
Q Consensus       416 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~  495 (929)
                      .++..+..+++|++|+|++|+|+. ++ .|.++++|+.|+|++|+|+ .+        |.....+++|+.|++++|+++.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i--------~~~~~~~~~L~~L~l~~N~i~~  107 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KI--------ENLDAVADTLEELWISYNQIAS  107 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SC--------SSHHHHHHHCCEEECSEEECCC
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cc--------cccccccccccccccccccccc
Confidence            456788999999999999999984 44 5888999999999999986 33        4444556689999999999985


Q ss_pred             CCCcchhcCcCcceeecccccccccCC-ccccCCCCCCEEECCCCcCCCcCCcc----------cccCCCCCeEe
Q 002376          496 NLPNSLKNCKSLEELLMAYNQFSGPIP-NIVAELKGLEVLDLSSNKLSGSIPSD----------LQNLQALRSLN  559 (929)
Q Consensus       496 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~  559 (929)
                       + +.+..+++|+.|++++|+|+.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       108 -l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         108 -L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             -H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             -c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence             3 358889999999999999985432 56888999999999999887554432          56688888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8e-12  Score=118.24  Aligned_cols=89  Identities=21%  Similarity=0.191  Sum_probs=40.7

Q ss_pred             hhhcccCccEEEecCC-CCCCCCCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCcccccCCC
Q 002376          476 EISRLENVVTIDLSDN-SLSGNLPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPSDLQNLQA  554 (929)
Q Consensus       476 ~~~~l~~L~~LdLs~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  554 (929)
                      .+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+.+.|.+|..+++|++|||++|+|+...+..|.. ..
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-~~  104 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LS  104 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-CC
T ss_pred             cccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-cc
Confidence            3344445555555433 244433444555555555555555555444445555555555555555554322222222 23


Q ss_pred             CCeEeCCCCcC
Q 002376          555 LRSLNLTFNNL  565 (929)
Q Consensus       555 L~~L~Ls~N~l  565 (929)
                      |+.|+|++|+|
T Consensus       105 l~~L~L~~Np~  115 (156)
T d2ifga3         105 LQELVLSGNPL  115 (156)
T ss_dssp             CCEEECCSSCC
T ss_pred             ccccccCCCcc
Confidence            44444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.6e-08  Score=95.70  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=46.7

Q ss_pred             hcccCccEEEecCCCCCCC--CCcchhcCcCcceeecccccccccCCccccCCCCCCEEECCCCcCCCcCCc-------c
Q 002376          478 SRLENVVTIDLSDNSLSGN--LPNSLKNCKSLEELLMAYNQFSGPIPNIVAELKGLEVLDLSSNKLSGSIPS-------D  548 (929)
Q Consensus       478 ~~l~~L~~LdLs~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~  548 (929)
                      ..+++|++||||+|+++..  ++..+..+++|+.|+|++|+|+...+-.+.....|+.|++++|.+++....       .
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            3455555555666555543  234455666677777777776654433333444667777777777654432       2


Q ss_pred             cccCCCCCeEe
Q 002376          549 LQNLQALRSLN  559 (929)
Q Consensus       549 ~~~l~~L~~L~  559 (929)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            44567777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-08  Score=96.56  Aligned_cols=104  Identities=24%  Similarity=0.260  Sum_probs=62.9

Q ss_pred             CCCceecccCcccccccCcccccccccceecccCCcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCCCCcchhcC
Q 002376          425 KKLNQIDLSGNELTGEIPISFGNFQSLLSIDLSNNRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGNLPNSLKNC  504 (929)
Q Consensus       425 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l  504 (929)
                      ..+..++..+|... .++..+.++++|++|+|++|+|+. +     ..++..+..+++|+.|||++|+++...+-.+...
T Consensus        42 ~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~-l-----~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~  114 (162)
T d1koha1          42 NIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYR-L-----DDMSSIVQKAPNLKILNLSGNELKSERELDKIKG  114 (162)
T ss_dssp             TCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCC-C-----SGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTT
T ss_pred             cchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccC-C-----chhHHHHhhCCcccccccccCccccchhhhhhhc
Confidence            33444444444333 334444556777777777777753 1     1124455667777777777777775433334444


Q ss_pred             cCcceeecccccccccCC-------ccccCCCCCCEEE
Q 002376          505 KSLEELLMAYNQFSGPIP-------NIVAELKGLEVLD  535 (929)
Q Consensus       505 ~~L~~L~Ls~N~l~~~~p-------~~~~~l~~L~~L~  535 (929)
                      ..|+.|++++|.++....       ..+..+++|+.||
T Consensus       115 ~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         115 LKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            567888888888876544       2366788888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.56  E-value=1.3e-05  Score=75.42  Aligned_cols=64  Identities=11%  Similarity=0.148  Sum_probs=35.6

Q ss_pred             hhcCcCcceeeccccccccc----CCccccCCCCCCEEECCCCcCCCc-------CCcccccCCCCCeEeCCCCc
Q 002376          501 LKNCKSLEELLMAYNQFSGP----IPNIVAELKGLEVLDLSSNKLSGS-------IPSDLQNLQALRSLNLTFNN  564 (929)
Q Consensus       501 ~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~L~Ls~N~  564 (929)
                      +...+.|++|+|++|.|+..    +-..+...++|+.|+|++|++...       +...+..-+.|+.|+++.+.
T Consensus        68 L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          68 IETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            34445566666666665432    223455566777777777765422       22334445667777776543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=1.5e-05  Score=75.02  Aligned_cols=16  Identities=25%  Similarity=0.304  Sum_probs=7.8

Q ss_pred             CCCCCceecccCcccc
Q 002376          423 NLKKLNQIDLSGNELT  438 (929)
Q Consensus       423 ~l~~L~~L~Ls~N~l~  438 (929)
                      ..+.|+.|+|++|.++
T Consensus        70 ~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          70 TSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HCSSCCEEECCSSBCC
T ss_pred             hcccccceeeehhhcc
Confidence            3344555555555544

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.18  E-value=0.00019  Score=72.51  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             HHHHHhhCCCCCceeecccCceeEEecccc--------------CcHHHHHHHHHHHHccC-CccccceeeecccCCCCC
Q 002376          654 DELRRATGNFSHENLIGSGSFGSVLHNERT--------------GSWKSFIAECETLRNVR-HRNLVKLITSCSSLDSKN  718 (929)
Q Consensus       654 ~~l~~~~~~~~~~~~iG~G~~g~Vy~~~~~--------------~~~~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~  718 (929)
                      .|+++..+.|+..+..+-++...||+....              .....+.+|...++.+. +--+.+++.+...     
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~-----   81 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH-----   81 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEECSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE-----
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEeCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEec-----
Confidence            355555566654444333334567764322              12235778998888774 3224556665532     


Q ss_pred             cceEEEEEEecCCCCcccccccc---ccccccHHHHHHHhh---------------------------------------
Q 002376          719 MEFLALVYEFLSNGSLGDWIHGE---RKNELDITSALDYLH---------------------------------------  756 (929)
Q Consensus       719 ~~~~~lV~e~~~~gsL~~~l~~~---~~~~~~ia~aL~yLH---------------------------------------  756 (929)
                      .+..++|||++++..+.+.....   .....++++.++.||                                       
T Consensus        82 ~~~~~lv~~~l~G~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (263)
T d1j7la_          82 DGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEED  161 (263)
T ss_dssp             TTEEEEEEECCSSEEHHHHTTTCSCHHHHHHHHHHHHHHHHTSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCCGGGGSTT
T ss_pred             CCceEEEEEecccccccccccccccHHHHHHHHHHHHHHHhccCccccccCcchhhhhhhHHHHHHHHhhhhhhhccccc
Confidence            23479999999987764432110   011122222333333                                       


Q ss_pred             --------------hCC---CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          757 --------------NDC---EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       757 --------------~~~---~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                                    ...   .+.++|+|+.|.||++++++.+-|.||+.+..
T Consensus       162 ~~~~~~~~~~~~l~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T d1j7la_         162 TPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             CSCSSHHHHHHHHHHSCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ccchHHHHHHHHHHhcCCcCCcEEEEeeccCcceeecCCceEEEeechhccc
Confidence                          211   12478999999999999877777999998864

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.75  E-value=0.00065  Score=68.05  Aligned_cols=101  Identities=13%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             cHHHHHHHHHHHHccCCc--cccceeeecccCCCCCcceEEEEEEecCCCCccccccccccc------------------
Q 002376          685 SWKSFIAECETLRNVRHR--NLVKLITSCSSLDSKNMEFLALVYEFLSNGSLGDWIHGERKN------------------  744 (929)
Q Consensus       685 ~~~~~~~E~~~l~~l~Hp--niv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~~~l~~~~~~------------------  744 (929)
                      ....+.+|+..++.+...  .+.++++++.+.     +..++||||+++.++.+.-......                  
T Consensus        47 ~~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~-----~~~~~v~~~i~G~~~~~~~~~~~~~~~~l~~~la~LH~~~~~~  121 (255)
T d1nd4a_          47 ALNELQDEAARLSWLATTGVPCAAVLDVVTEA-----GRDWLLLGEVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPAT  121 (255)
T ss_dssp             TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECS-----SCEEEEEECCSSEETTTSCCCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred             CHhHHHHHHHHHHHHHhcCCCCCceeeecccc-----cceEEEEEeeeccccccccccHHHHHHHHHHHHHHHccCChhh
Confidence            344577888888877432  245566665432     2479999999886664421100000                  


Q ss_pred             ---------------------------------cccHHHHHHHhhhCC----CCCEEecCCCCCCeeecCCCceEEeccc
Q 002376          745 ---------------------------------ELDITSALDYLHNDC----EVPVVHSDLKPGNILLDEEMTAKVGDFG  787 (929)
Q Consensus       745 ---------------------------------~~~ia~aL~yLH~~~----~~~iiHrDlk~~NILl~~~~~~ki~DfG  787 (929)
                                                       .......+..+....    .+.++|+|+.|.||+++++..+-|.||+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~liHgD~~~~Nvl~~~~~~~~iID~~  201 (255)
T d1nd4a_         122 CPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCG  201 (255)
T ss_dssp             CCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCT
T ss_pred             CCCcccchhhHHHHHHHHHHhhhccccccchhhhhHHHHHHHHHHHhCCccCCceEEeCCCCCcceEEeCCceEEEEEch
Confidence                                             011233344444322    2347999999999999987777899999


Q ss_pred             ccc
Q 002376          788 LAR  790 (929)
Q Consensus       788 la~  790 (929)
                      .+.
T Consensus       202 ~~~  204 (255)
T d1nd4a_         202 RLG  204 (255)
T ss_dssp             TCE
T ss_pred             hcc
Confidence            875

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.50  E-value=0.00021  Score=66.71  Aligned_cols=14  Identities=7%  Similarity=0.048  Sum_probs=6.5

Q ss_pred             ccccceecccCCcC
Q 002376          448 FQSLLSIDLSNNRI  461 (929)
Q Consensus       448 l~~L~~L~Ls~N~l  461 (929)
                      .++|+.|+|++|.+
T Consensus        45 n~~L~~L~Ls~n~l   58 (166)
T d1io0a_          45 NTYVKKFSIVGTRS   58 (166)
T ss_dssp             CCSCCEEECTTSCC
T ss_pred             CCccCeeeccCCcc
Confidence            34444444444444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.43  E-value=0.00021  Score=66.76  Aligned_cols=116  Identities=21%  Similarity=0.231  Sum_probs=71.0

Q ss_pred             ccccccceecccC-CcCCCCCCCCcccCCchhhhcccCccEEEecCCCCCCC----CCcchhcCcCcceeeccccccccc
Q 002376          446 GNFQSLLSIDLSN-NRINGNIPKGILRPLPEEISRLENVVTIDLSDNSLSGN----LPNSLKNCKSLEELLMAYNQFSGP  520 (929)
Q Consensus       446 ~~l~~L~~L~Ls~-N~l~g~i~~~~~~~~p~~~~~l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~  520 (929)
                      .+.++|+.|+|++ |.++.    ..+..+-..+...+.|+.|+|++|.++..    +-..+...++++.+++++|.++..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~----~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPV----PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCH----HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             hcCCCCcEEEcCCCCCCCH----HHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            3456677777776 34531    11112233445667889999999987643    223455677888888888887533


Q ss_pred             ----CCccccCCCCCCEEEC--CCCcCCC----cCCcccccCCCCCeEeCCCCcC
Q 002376          521 ----IPNIVAELKGLEVLDL--SSNKLSG----SIPSDLQNLQALRSLNLTFNNL  565 (929)
Q Consensus       521 ----~p~~~~~l~~L~~L~L--s~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l  565 (929)
                          +-..+...++|+.++|  ++|.+..    .+...+...+.|+.|+++.|..
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence                2345666778876555  4566643    2334455667788888766543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=94.62  E-value=0.021  Score=60.55  Aligned_cols=31  Identities=32%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             CCEEecCCCCCCeeecCCCceEEecccccccc
Q 002376          761 VPVVHSDLKPGNILLDEEMTAKVGDFGLARFL  792 (929)
Q Consensus       761 ~~iiHrDlk~~NILl~~~~~~ki~DfGla~~~  792 (929)
                      ..++|+|+.|.|||++++. ++|.||..|..-
T Consensus       223 ~~LiHGDl~~gNIlv~~~~-~~vID~E~a~~G  253 (392)
T d2pula1         223 ETLIHGDLHTGSIFASEHE-TKVIDPEFAFYG  253 (392)
T ss_dssp             CEEECSCCCGGGEEECSSC-EEECCCTTCEEE
T ss_pred             cceeccCCcCCceeEcCCc-eEEechhhcccC
Confidence            3689999999999999764 899999988753

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.31  E-value=0.14  Score=54.03  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHccC-CccccceeeecccCCCCCcceEEEEEEecCCCCcc
Q 002376          687 KSFIAECETLRNVR-HRNLVKLITSCSSLDSKNMEFLALVYEFLSNGSLG  735 (929)
Q Consensus       687 ~~~~~E~~~l~~l~-Hpniv~l~~~~~~~~~~~~~~~~lV~e~~~~gsL~  735 (929)
                      ....+|..+++.+. +.-..++++++..         .+||||+++..+.
T Consensus        89 idr~~E~~i~~~ls~~gl~Pkll~~~~~---------g~I~efi~g~~l~  129 (395)
T d1nw1a_          89 SHLVAESVIFTLLSERHLGPKLYGIFSG---------GRLEEYIPSRPLS  129 (395)
T ss_dssp             HHHHHHHHHHHHHHHTTSSSCEEEEETT---------EEEECCCCEEECC
T ss_pred             hHHHHHHHHHHHHHhCCCCCeEEEEcCC---------ceEEEEeccccCC
Confidence            34567888888885 4334467777621         6899999875543

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=87.54  E-value=0.33  Score=49.39  Aligned_cols=30  Identities=33%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEeccccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLARF  791 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~~  791 (929)
                      ..++||+|+.+.|||++++  ..+.||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            4578999999999999754  45889998763

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=80.36  E-value=0.22  Score=50.50  Aligned_cols=31  Identities=26%  Similarity=0.320  Sum_probs=27.9

Q ss_pred             CCCEEecCCCCCCeeecCCCceEEecccccc
Q 002376          760 EVPVVHSDLKPGNILLDEEMTAKVGDFGLAR  790 (929)
Q Consensus       760 ~~~iiHrDlk~~NILl~~~~~~ki~DfGla~  790 (929)
                      +.++||+|+.+.||+++++...-|.||+.+.
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             ccccccCCcchhhhhcccccceeEecccccc
Confidence            4589999999999999998877899999875