Citrus Sinensis ID: 002378
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | 2.2.26 [Sep-21-2011] | |||||||
| Q6AXC6 | 880 | Probable ATP-dependent RN | yes | no | 0.864 | 0.912 | 0.341 | 1e-143 | |
| A8MPP1 | 907 | Putative ATP-dependent RN | yes | no | 0.870 | 0.891 | 0.329 | 1e-142 | |
| Q92771 | 950 | Putative ATP-dependent RN | no | no | 0.854 | 0.835 | 0.332 | 1e-142 | |
| A1D8E4 | 861 | ATP-dependent RNA helicas | N/A | no | 0.840 | 0.907 | 0.355 | 1e-139 | |
| Q96FC9 | 970 | Probable ATP-dependent RN | no | no | 0.806 | 0.772 | 0.336 | 1e-132 | |
| A2QY22 | 874 | ATP-dependent RNA helicas | yes | no | 0.844 | 0.898 | 0.336 | 1e-129 | |
| O14147 | 844 | ATP-dependent RNA helicas | yes | no | 0.856 | 0.943 | 0.321 | 1e-127 | |
| A3LN13 | 835 | ATP-dependent RNA helicas | yes | no | 0.851 | 0.947 | 0.325 | 1e-124 | |
| Q1E5T3 | 861 | ATP-dependent RNA helicas | N/A | no | 0.852 | 0.919 | 0.317 | 1e-121 | |
| A7UXD4 | 1073 | ATP-dependent RNA helicas | N/A | no | 0.856 | 0.741 | 0.325 | 1e-120 |
| >sp|Q6AXC6|DDX11_MOUSE Probable ATP-dependent RNA helicase DDX11 OS=Mus musculus GN=Ddx11 PE=2 SV=1 | Back alignment and function desciption |
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Score = 508 bits (1308), Expect = e-143, Method: Compositional matrix adjust.
Identities = 324/948 (34%), Positives = 496/948 (52%), Gaps = 145/948 (15%)
Query: 22 IQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDQKQKQKQKQKYETMIKS 81
IQ DFM LY LE G + + ESPTGTGK+LS+IC AL W+ D ++K+ Q + S
Sbjct: 22 IQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLICGALSWLRDFEKKKLQAEALLLAPGS 81
Query: 82 ------DHSFTNNGDCSSND-------EPDWMRNFVVNRDFQAEDAKIKKKKNGCGLGKT 128
+S + C EPDW+ FV ++ E +++ + +
Sbjct: 82 GPPSSEKNSLLTSSSCQEPTDTPRPAGEPDWVTEFVQKKE---ERDLVERLREEQKHEEE 138
Query: 129 GERKHREISTDTFSHSMEKDKCFTKKECENLQSINDQSELSDEEFLLEEYESEEEGAIGG 188
+S + ++ +Q E +E +L EYES+EE
Sbjct: 139 ETEALLRLSREMLDAGTGPEQL-------------EQLECGEEHLVLAEYESDEE----- 180
Query: 189 GKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKTVFANEI 248
+ G+ + D EEE + K+Y+CSRTHSQL+QF++E+ K+ F E
Sbjct: 181 -----RRGSRVDEAEDDLEEE--------HITKIYYCSRTHSQLAQFVREVLKSPFGKET 227
Query: 249 KVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGKVRR--TKA 306
++V LGSR+ C+NE+V LG+ +N+RC+++Q K+ KN E K +R K
Sbjct: 228 RLVSLGSRQTLCVNEDVKNLGSVQLMNDRCVDMQRSKRE-----KNGTGEDKPKRKRQKI 282
Query: 307 FSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPY 366
+ CP +H+ + R+EI + D+E LV LG+ R CPYYGSR +P A LVVLPY
Sbjct: 283 QTSCP-FYNHEQMELLRDEILLE-VKDMEQLVALGKEARACPYYGSRFAIPAAQLVVLPY 340
Query: 367 QSLLSKSARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGRF 426
LL + R++ G+ L+ +VIIDEAHNL D++ N+++ ++ SQL HS L +Y R+
Sbjct: 341 PMLLHAATRQAAGIRLQGQVVIIDEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQYMERY 400
Query: 427 CSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLF 486
L N YI+ ++ F+ VL +N Q S + TG++ +IN+FLF
Sbjct: 401 RKRLKAKNLMYIKQILYLLEKFVAVLGGNVKQNPTTQ-SLSQTGSELK-----SINDFLF 454
Query: 487 SLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSL 546
+DNINL K+ +Y+++S + K+ G+ + G VL ++ +E L+GFQ
Sbjct: 455 QSQVDNINLFKVQRYLEKSMLSRKLFGFTECF-----GVVLPSLSDS-QENRGLAGFQQF 508
Query: 547 VD------------------------------MLISLTNNDGDGRIIISKARPISSGQQG 576
+ L +LT + DGR+I+++ G G
Sbjct: 509 LKSLQSGPTEDSPEEGQAVALRPASPLMHIEAFLAALTTANQDGRVIVNR-----QGSVG 563
Query: 577 QQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPW--LSPNKFHFFSC 634
Q LK+++L F+++V++ AV++AGGT+QP+ + RE+L + + FSC
Sbjct: 564 QSS--LKFLLLNPAVHFAQVVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSC 621
Query: 635 SHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPS 694
H++PP++ILP+ + GP+ + +F+Y R M+EE G +LCNL +VVP G++ F PS
Sbjct: 622 GHVIPPDNILPLIICSGPSNQQLEFTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPS 681
Query: 695 FEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTP 754
+EY+ +V+ W G+L R+ +K +F+EP+ + VE VL Y K I + S
Sbjct: 682 YEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRASQVEQVLMAYSKCIMSCS----HSEGH 737
Query: 755 LNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHI-EGLGDTNSK 813
L GA+LL+VVGGK+SEGINFSD +GRC+VMVG+PYP+ + EL E++ ++ + L T +
Sbjct: 738 LTGALLLSVVGGKMSEGINFSDDLGRCVVMVGMPYPNIKSPELQEKMAYLNQTLPRTQGQ 797
Query: 814 TLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILL 873
L G ENLCMKA+NQSIGRAIRH D A+I+L
Sbjct: 798 PLP-------------------------GTVLIENLCMKAINQSIGRAIRHQRDFASIVL 832
Query: 874 VDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFK 921
+D RYA S KLP WI+DR V +G + +F +
Sbjct: 833 LDHRYARPSI-------LAKLPAWIRDR-VEVKATFGPAFAAVRKFHR 872
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DNA helicase involved in cellular proliferation. Possesses DNA-dependent ATPase and helicase activities. This helicase translocates on single-stranded DNA in the 5' to 3' direction in the presence of ATP and, to a lesser extent, dATP. Its unwinding activity requires a 5'-single-stranded region for helicase loading, since flush-ended duplex structures do not support unwinding. The helicase activity is capable of displacing duplex regions up to 100 bp, which can be extended to 500 bp by RPA or the cohesion establishment factor, the Ctf18-RFC (replication factor C) complex activities. Stimulates the flap endonuclease activity of FEN1. Required for normal sister chromatid cohesion. Required for maintaining the chromosome segregation and is essential for embryonic development and the prevention of aneuploidy. May function during either S, G2, or M phase of the cell cycle. Binds to both single- and double-stranded DNA. Mus musculus (taxid: 10090) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|A8MPP1|D11L8_HUMAN Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo sapiens GN=DDX11L8 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q92771|DDX12_HUMAN Putative ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12P PE=5 SV=3 | Back alignment and function description |
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| >sp|A1D8E4|CHL1_NEOFI ATP-dependent RNA helicase chl1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=chl1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 OS=Homo sapiens GN=DDX11 PE=1 SV=1 | Back alignment and function description |
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| >sp|A2QY22|CHL1_ASPNC ATP-dependent RNA helicase chl1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=chl1 PE=3 SV=1 | Back alignment and function description |
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| >sp|O14147|CHL1_SCHPO ATP-dependent RNA helicase chl1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chl1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A3LN13|CHL1_PICST ATP-dependent RNA helicase CHL1 OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) GN=CHL1 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q1E5T3|CHL1_COCIM ATP-dependent RNA helicase CHL1 OS=Coccidioides immitis (strain RS) GN=CHL1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A7UXD4|CHL1_NEUCR ATP-dependent RNA helicase chl-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=chl-1 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| 224059074 | 918 | predicted protein [Populus trichocarpa] | 0.978 | 0.990 | 0.715 | 0.0 | |
| 225442629 | 961 | PREDICTED: probable ATP-dependent RNA he | 0.962 | 0.930 | 0.712 | 0.0 | |
| 147789151 | 914 | hypothetical protein VITISV_017477 [Viti | 0.959 | 0.974 | 0.692 | 0.0 | |
| 449448180 | 914 | PREDICTED: putative ATP-dependent RNA he | 0.976 | 0.992 | 0.639 | 0.0 | |
| 297743271 | 826 | unnamed protein product [Vitis vinifera] | 0.885 | 0.996 | 0.679 | 0.0 | |
| 449491848 | 1168 | PREDICTED: probable ATP-dependent RNA he | 0.958 | 0.761 | 0.637 | 0.0 | |
| 357468391 | 1129 | ATP-dependent RNA helicase chl1 [Medicag | 0.953 | 0.784 | 0.656 | 0.0 | |
| 356522168 | 897 | PREDICTED: putative ATP-dependent RNA he | 0.950 | 0.984 | 0.656 | 0.0 | |
| 15220007 | 882 | chromosome transmission fidelity protein | 0.922 | 0.971 | 0.624 | 0.0 | |
| 297842879 | 868 | hypothetical protein ARALYDRAFT_477275 [ | 0.910 | 0.974 | 0.615 | 0.0 |
| >gi|224059074|ref|XP_002299703.1| predicted protein [Populus trichocarpa] gi|222846961|gb|EEE84508.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1324 bits (3427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 663/927 (71%), Positives = 760/927 (81%), Gaps = 18/927 (1%)
Query: 11 EFPAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDQKQKQK 70
EF FPYKPYSIQ DFMKALY SL GGVS+LESPTGTGKTLSIICSALQWV D++Q+ K
Sbjct: 2 EFRGFPYKPYSIQIDFMKALYHSLNQGGVSILESPTGTGKTLSIICSALQWVYDRRQQDK 61
Query: 71 QKQKYETMIKSDHSFTNNGDCSSNDEPDWMRNFVVNRDFQAEDAKIKKKKNGCGLGKTGE 130
K ++S H T++ S+DEPDW+RNFV N+D ++ KI KK G G
Sbjct: 62 SK----VQVQSPHHSTDDAHSGSDDEPDWLRNFVPNKDNLTQEKKINKK---FGFGGCDR 114
Query: 131 RKHR-EISTDTFSHSMEKDKCFTKKECENLQSINDQSELSDEEFLLEEYESEEEGAIGGG 189
R++R E D FS +E++ C + E + + ND ELSD+EFLL+EYESEEEGA+GGG
Sbjct: 115 RRNRKESCKDLFSRDLEEEDCNKRGENKCSRKKNDGVELSDDEFLLDEYESEEEGALGGG 174
Query: 190 KSKRKAGAGTISSSSDEEEE----DGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKTVFA 245
KSKRKAG +ISSSSDEE E DG +EE E+ K+YFCSRTHSQLSQFIKELRKT+F+
Sbjct: 175 KSKRKAGGVSISSSSDEEGEKDGPDGEEEEEEKAFKIYFCSRTHSQLSQFIKELRKTLFS 234
Query: 246 NEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGKVRRTK 305
NEI VVCLGSRKNFCINEEVL+LG+S +NERCLELQ KKNE+ KIKN AEG++RRTK
Sbjct: 235 NEINVVCLGSRKNFCINEEVLKLGSSVRVNERCLELQKNKKNEVSKIKNFSAEGRIRRTK 294
Query: 306 AFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLP 365
A SGCP+LR HKLQK FRNE SQ GALDIEDLV +GR + TCPYYGSRSMVP ADLVVLP
Sbjct: 295 ASSGCPMLRKHKLQKEFRNETSQHGALDIEDLVRIGRSIGTCPYYGSRSMVPAADLVVLP 354
Query: 366 YQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHSHLEKYFGR 425
YQSLLSKS+RESLGLNLKN+I++IDEAHNLADSLI+MY+AKIT SQLE+VHSH+EKYF R
Sbjct: 355 YQSLLSKSSRESLGLNLKNSIIVIDEAHNLADSLISMYDAKITSSQLESVHSHIEKYFTR 414
Query: 426 FCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVR--QDSENSTGAKHAFDSSVAINE 483
F +LLGPGNRRYIQTLMV TRAFLQ L +KD ++V Q E + K D+S+AIN+
Sbjct: 415 FRNLLGPGNRRYIQTLMVLTRAFLQTLDNKKDLSNVNNYQAEEIAADKKAVCDTSIAIND 474
Query: 484 FLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSGF 543
FLFSLNIDNINLVKLL+YIKESN++HKVSGYG+K ASLQ+G L GE EEGS LS F
Sbjct: 475 FLFSLNIDNINLVKLLQYIKESNLVHKVSGYGEKVASLQEGLALNRNGEFGEEGSTLSSF 534
Query: 544 QSLVDMLISLTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQAHAV 603
++LVDML+SLTNNDGDGR+IISK R S G QGG+LKYVMLTGEK+FSEIV++AHAV
Sbjct: 535 RALVDMLMSLTNNDGDGRMIISKMRSTCS---GLQGGFLKYVMLTGEKIFSEIVDEAHAV 591
Query: 604 ILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGKSFDFSYGS 663
ILAGGTLQPIEETRERLFPWL PN+ HFFSCSHIVPPESILP+A+S GP+G+SFDFSY S
Sbjct: 592 ILAGGTLQPIEETRERLFPWLPPNQLHFFSCSHIVPPESILPIAVSRGPSGQSFDFSYSS 651
Query: 664 RSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFRE 723
RSS MIEELGLLLCNLV+ VPEGI+VFF SFEY +VY +WK GIL+RIM+KK +FRE
Sbjct: 652 RSSLVMIEELGLLLCNLVAFVPEGIVVFFSSFEYEGQVYDSWKKSGILERIMRKKRIFRE 711
Query: 724 PRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIV 783
PR N+ VE +LKEY++TID LSS KED NGA+LLAVVGGKISEGINFSDGMGRCIV
Sbjct: 712 PRSNSDVELILKEYKETIDGLSSGTKEDGVRHNGAVLLAVVGGKISEGINFSDGMGRCIV 771
Query: 784 MVGLPYPSPSNIELLERIKHIEGLGDTN-SKTLNTSASDAYYNGDAQAGFGILRSCRGRG 842
MVGLPYPSPS++EL+ER+K+IE LG+ N K S + YYNGD Q F ILRSCR RG
Sbjct: 772 MVGLPYPSPSDMELMERVKYIESLGEPNCGKRPEISVGEHYYNGDVQTAFSILRSCRRRG 831
Query: 843 KEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLPRWIKDRL 902
KEYYENLCMKAVNQSIGRAIRHIND+AAILLVD+RYAS+SSK S SHP NKLP WIKDRL
Sbjct: 832 KEYYENLCMKAVNQSIGRAIRHINDYAAILLVDMRYASDSSKTSFSHPTNKLPLWIKDRL 891
Query: 903 VSSTNNYGEVHRLLHQFFKFNKNRGCQ 929
VS+TNNYGEVHRLLHQFFK+NK R CQ
Sbjct: 892 VSATNNYGEVHRLLHQFFKYNKKRECQ 918
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442629|ref|XP_002279503.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147789151|emb|CAN73493.1| hypothetical protein VITISV_017477 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449448180|ref|XP_004141844.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297743271|emb|CBI36138.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449491848|ref|XP_004159020.1| PREDICTED: probable ATP-dependent RNA helicase DDX11-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357468391|ref|XP_003604480.1| ATP-dependent RNA helicase chl1 [Medicago truncatula] gi|355505535|gb|AES86677.1| ATP-dependent RNA helicase chl1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356522168|ref|XP_003529720.1| PREDICTED: putative ATP-dependent RNA helicase DDX11-like protein 8-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|15220007|ref|NP_178107.1| chromosome transmission fidelity protein 1 [Arabidopsis thaliana] gi|12324592|gb|AAG52253.1|AC011717_21 putative helicase; 55525-51977 [Arabidopsis thaliana] gi|332198199|gb|AEE36320.1| chromosome transmission fidelity protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297842879|ref|XP_002889321.1| hypothetical protein ARALYDRAFT_477275 [Arabidopsis lyrata subsp. lyrata] gi|297335162|gb|EFH65580.1| hypothetical protein ARALYDRAFT_477275 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 929 | ||||||
| TAIR|locus:2017894 | 882 | AT1G79890 [Arabidopsis thalian | 0.737 | 0.776 | 0.600 | 9.6e-242 | |
| UNIPROTKB|E2RGR5 | 908 | DDX11 "Uncharacterized protein | 0.666 | 0.681 | 0.370 | 3.5e-135 | |
| MGI|MGI:2443590 | 880 | Ddx11 "DEAD/H (Asp-Glu-Ala-Asp | 0.666 | 0.703 | 0.367 | 5e-134 | |
| UNIPROTKB|Q92771 | 950 | DDX12P "Putative ATP-dependent | 0.670 | 0.655 | 0.353 | 3.1e-128 | |
| ZFIN|ZDB-GENE-041114-191 | 890 | ddx11 "DEAD/H (Asp-Glu-Ala-Asp | 0.615 | 0.642 | 0.373 | 6.5e-126 | |
| UNIPROTKB|A8MPP1 | 907 | DDX11L8 "Putative ATP-dependen | 0.615 | 0.630 | 0.338 | 1.5e-116 | |
| UNIPROTKB|F1SK84 | 682 | DDX11 "Uncharacterized protein | 0.602 | 0.821 | 0.369 | 4.2e-115 | |
| UNIPROTKB|E1BL06 | 913 | E1BL06 "Uncharacterized protei | 0.709 | 0.721 | 0.353 | 5.4e-115 | |
| RGD|1306675 | 882 | Ddx11 "DEAD/H (Asp-Glu-Ala-Asp | 0.610 | 0.642 | 0.331 | 2.4e-110 | |
| UNIPROTKB|Q96FC9 | 970 | DDX11 "Probable ATP-dependent | 0.616 | 0.590 | 0.350 | 2.4e-108 |
| TAIR|locus:2017894 AT1G79890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2104 (745.7 bits), Expect = 9.6e-242, Sum P(2) = 9.6e-242
Identities = 426/709 (60%), Positives = 535/709 (75%)
Query: 221 KVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLE 280
KV+FCSRTHSQLSQF+KELRKTVFA ++KVVCLGSRKN CINE+VL+LGN T INERCL+
Sbjct: 184 KVFFCSRTHSQLSQFVKELRKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVTRINERCLD 243
Query: 281 LQXXXXXXXXXXXXLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHL 340
LQ LGA ++ RTKA CP+LR HKLQ+ F+ E QQ A+DIEDLV L
Sbjct: 244 LQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQQEAMDIEDLVQL 303
Query: 341 GRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLI 400
GR MRTCPYYGSR M P ADLV+LPYQSLLSKS+RESLGL+LKN++VIIDEAHNLAD+L+
Sbjct: 304 GREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSLKNSVVIIDEAHNLADTLL 363
Query: 401 NMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDEND 460
+M++AK+T+SQLE++H +E Y GRF +LLG GNRRYIQ +++ TRAFL+ L +++ +
Sbjct: 364 SMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAGNRRYIQIMLILTRAFLKPLASDRNLSS 423
Query: 461 VRQDSENSTGAKHAFDSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAAS 520
V + +K + ++ + F ++ NI+ + L+K + + I K S K +
Sbjct: 424 VNVGLDTENPSKSKPCGACSMAIYDFLFSL-NIDNINLVKLL--AYI--KESNIIHKVSG 478
Query: 521 LQK--GSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSXXXXXX 578
+ ++L+ +EE S L+ F++ DML++LTNN+GDGRIIIS+ SS
Sbjct: 479 YGERVAAMLQKDPVAHEEMSKLTSFRAFSDMLVALTNNNGDGRIIISRT---SSSTSGQH 535
Query: 579 XXYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIV 638
Y+KYVMLTG K+FSE+V++AHAVILAGGTLQPIEETRERLFPWL N+ FFSCSHIV
Sbjct: 536 GGYIKYVMLTGAKLFSEVVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQFFSCSHIV 595
Query: 639 PPESILPVALSCGPTGKXXXXXXXXXXXXAMIEELGLLLCNLVSVVPEGIIVFFPSFEYV 698
PPESI+P+A+S GP+G+ MI+ELGLL+ NLV+VVPEGIIVFF SFEY
Sbjct: 596 PPESIMPIAVSHGPSGQSFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYE 655
Query: 699 ERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGA 758
+V+ AW + GIL RI+KKK VFREPR NT VE+VL++Y++ I+ S R GA
Sbjct: 656 TQVHTAWSNSGILRRIVKKKRVFREPRKNTEVEAVLRDYKEAIE--SER---------GA 704
Query: 759 MLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNS-KTLNT 817
++LAVVGGK+SEGINFSD M RC+VMVGLPYPSPS+IELLERIKHIEG D++S K T
Sbjct: 705 IMLAVVGGKVSEGINFSDSMCRCVVMVGLPYPSPSDIELLERIKHIEGRADSDSIKPSVT 764
Query: 818 SASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLR 877
D+YY+GD QAGFG+L+SC+ RGKEYYENLCMKAVNQSIGRAIRH D+A+ILLVD R
Sbjct: 765 LVDDSYYSGDVQAGFGVLKSCKRRGKEYYENLCMKAVNQSIGRAIRHEKDYASILLVDAR 824
Query: 878 YASESSKR-SCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFKFNKN 925
Y+++ SKR S SHP+NKLP+WIKDRL+ ST YG+VHRLLHQFFK +KN
Sbjct: 825 YSNDPSKRTSHSHPSNKLPKWIKDRLIYSTKGYGDVHRLLHQFFK-HKN 872
|
|
| UNIPROTKB|E2RGR5 DDX11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2443590 Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q92771 DDX12P "Putative ATP-dependent RNA helicase DDX12" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-041114-191 ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A8MPP1 DDX11L8 "Putative ATP-dependent RNA helicase DDX11-like protein 8" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SK84 DDX11 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BL06 E1BL06 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| RGD|1306675 Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q96FC9 DDX11 "Probable ATP-dependent RNA helicase DDX11" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6FKT4 | CHL1_CANGA | 3, ., 6, ., 4, ., 1, 3 | 0.3072 | 0.8266 | 0.9253 | yes | no |
| O14147 | CHL1_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.3216 | 0.8568 | 0.9431 | yes | no |
| Q6CIF0 | CHL1_KLULA | 3, ., 6, ., 4, ., 1, 3 | 0.3262 | 0.8331 | 0.9591 | yes | no |
| A2QY22 | CHL1_ASPNC | 3, ., 6, ., 4, ., 1, 3 | 0.3360 | 0.8449 | 0.8981 | yes | no |
| A8MPP1 | D11L8_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.3295 | 0.8708 | 0.8919 | yes | no |
| A3LN13 | CHL1_PICST | 3, ., 6, ., 4, ., 1, 3 | 0.3250 | 0.8514 | 0.9473 | yes | no |
| Q6AXC6 | DDX11_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.3417 | 0.8643 | 0.9125 | yes | no |
| Q6CAX3 | CHL1_YARLI | 3, ., 6, ., 4, ., 1, 3 | 0.3279 | 0.8256 | 0.9551 | yes | no |
| Q6BZD9 | CHL1_DEBHA | 3, ., 6, ., 4, ., 1, 3 | 0.3058 | 0.8406 | 0.9524 | yes | no |
| P22516 | CHL1_YEAST | 3, ., 6, ., 4, ., 1, 3 | 0.3132 | 0.8460 | 0.9128 | yes | no |
| Q750G3 | CHL1_ASHGO | 3, ., 6, ., 4, ., 1, 3 | 0.3004 | 0.8137 | 0.9438 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.824 |
| 3rd Layer | 3.6.4 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_I000538 | hypothetical protein (918 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.XIII.413.1 | • | • | • | 0.426 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 929 | |||
| TIGR00604 | 705 | TIGR00604, rad3, DNA repair helicase (rad3) | 1e-135 | |
| pfam06733 | 168 | pfam06733, DEAD_2, DEAD_2 | 5e-60 | |
| COG1199 | 654 | COG1199, DinG, Rad3-related DNA helicases [Transcr | 2e-49 | |
| smart00488 | 289 | smart00488, DEXDc2, DEAD-like helicases superfamil | 2e-43 | |
| pfam13307 | 165 | pfam13307, Helicase_C_2, Helicase C-terminal domai | 4e-40 | |
| smart00491 | 142 | smart00491, HELICc2, helicase superfamily c-termin | 2e-35 | |
| smart00488 | 289 | smart00488, DEXDc2, DEAD-like helicases superfamil | 2e-17 | |
| COG1199 | 654 | COG1199, DinG, Rad3-related DNA helicases [Transcr | 3e-09 | |
| TIGR00604 | 705 | TIGR00604, rad3, DNA repair helicase (rad3) | 1e-06 | |
| PRK11747 | 697 | PRK11747, dinG, ATP-dependent DNA helicase DinG; P | 7e-04 |
| >gnl|CDD|233047 TIGR00604, rad3, DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Score = 420 bits (1082), Expect = e-135
Identities = 204/755 (27%), Positives = 333/755 (44%), Gaps = 119/755 (15%)
Query: 188 GGKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKT----- 242
G ++ + +GT + S +E EV K+ + SRTHSQL Q +ELRK
Sbjct: 29 GDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLMSYRT 88
Query: 243 ---VFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEG 299
+ + + L SRKN C++ EV + +N +C++L K
Sbjct: 89 PRIGEESPVSGLSLASRKNLCLHPEVSKERQGKVVNGKCIKLTVSK-------------I 135
Query: 300 KVRRTKAFS--GCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVP 357
K +RT+ + C + + + + +DIEDLV G + CPY+ +R M+P
Sbjct: 136 KEQRTEKPNVESCEFYENFDELREVEDLLLS-EIMDIEDLVEYGELLGLCPYFATRKMLP 194
Query: 358 TADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENVHS 417
A++V+LPYQ LL R ++ + LK++IVI DEAHNL + I+ ++ +++ L+
Sbjct: 195 FANIVLLPYQYLLDPKIRSAVSIELKDSIVIFDEAHNLDNVCISSLSSNLSVRSLKRCSK 254
Query: 418 HLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFDS 477
+ +YF + R+ + L + ++ L +E D N
Sbjct: 255 EIAEYFEKIEERKEVDARKLLDEL----QKLVEGLKQEDLLTDEDIFLANPV-----LPK 305
Query: 478 SVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAA---------SLQKGSVLK 528
V ++ I I L KL +Y++ KV G + L+
Sbjct: 306 EVLPEAVPGNIRIAEIFLHKLSRYLEYLKDALKVLGVVSELPDAFLEHLKEKTFIDRPLR 365
Query: 529 DGGENYEEG---------------SILSGFQSLVDMLISLTNNDGDGRIIISKARPISSG 573
E +L F +LV + TN +G
Sbjct: 366 FCSERLSNLLRELEITHPEDFSALVLLFTFATLVL---TYTNGFLEGIEPYE-------- 414
Query: 574 QQGQQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFS 633
+ LK++ L + E+ +VILA GTL P++ L N S
Sbjct: 415 NKTVPNPILKFMCLDPSIALKPLFERVRSVILASGTLSPLDAFPRNLGF----NPVSQDS 470
Query: 634 CSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFP 693
+HI+ E++L + ++ G ++ R+ +++ LG LL ++P+GI+VFFP
Sbjct: 471 PTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSKIIPDGIVVFFP 530
Query: 694 SFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDST 753
S+ Y+E + WK +GIL+ I KKK +F E + L+ Y++ + R
Sbjct: 531 SYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSE--GR------ 582
Query: 754 PLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSK 813
GA+LL+V GGK+SEGI+F D +GR ++MVG+PY + LL R +E L D
Sbjct: 583 ---GAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLAR---LEFLRDQYPI 636
Query: 814 TLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILL 873
R +++YE M+AVNQ+IGR IRH +D+ +I+L
Sbjct: 637 -------------------------REN-QDFYEFDAMRAVNQAIGRVIRHKDDYGSIVL 670
Query: 874 VDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNN 908
+D RYA + ++ KLP+WI+D + SS N
Sbjct: 671 LDKRYARSNKRK-------KLPKWIQDTIQSSDLN 698
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 705 |
| >gnl|CDD|219153 pfam06733, DEAD_2, DEAD_2 | Back alignment and domain information |
|---|
| >gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|214693 smart00488, DEXDc2, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|222037 pfam13307, Helicase_C_2, Helicase C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214694 smart00491, HELICc2, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|214693 smart00488, DEXDc2, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >gnl|CDD|224120 COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233047 TIGR00604, rad3, DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >gnl|CDD|236966 PRK11747, dinG, ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 100.0 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 100.0 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 100.0 | |
| KOG1131 | 755 | consensus RNA polymerase II transcription initiati | 100.0 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 100.0 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 100.0 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 100.0 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 100.0 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 100.0 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 100.0 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 100.0 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 100.0 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 100.0 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 100.0 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 100.0 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 99.97 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.36 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.35 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.33 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.32 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.28 | |
| PTZ00110 | 545 | helicase; Provisional | 99.24 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.24 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.23 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.16 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.14 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.12 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 98.99 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 98.93 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 98.72 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 98.68 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 98.08 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 97.51 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 97.46 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 97.4 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 97.3 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 97.28 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 97.2 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 97.2 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 97.16 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 97.02 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 97.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.93 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 96.88 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 96.75 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 96.74 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.74 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 96.68 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 96.65 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.6 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 96.55 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 96.44 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 96.44 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 96.44 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 96.3 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 96.27 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 96.21 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 96.18 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 96.12 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 96.11 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 96.02 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 95.98 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 95.95 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 95.95 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 95.9 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 95.87 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 95.84 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 95.73 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 95.71 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 95.68 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 95.62 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 95.52 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 95.52 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 95.45 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 94.96 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 94.93 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 94.9 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 94.82 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 94.81 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 94.76 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 94.74 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 94.71 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 94.51 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 94.49 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 94.4 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 94.35 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 94.35 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 94.23 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 94.22 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 94.2 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 94.16 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 94.08 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 94.05 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 93.83 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 93.78 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 93.76 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 93.32 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 93.18 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 93.18 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 93.11 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 93.06 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 93.03 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 92.85 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 92.83 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 92.47 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 92.43 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 92.28 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 92.28 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 92.22 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 92.17 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 92.05 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 92.02 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 91.92 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 91.7 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 91.63 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 91.5 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 91.47 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 91.44 | |
| PHA02244 | 383 | ATPase-like protein | 91.3 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 91.18 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 90.61 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 90.37 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 90.19 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 89.97 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 89.64 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 89.59 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 89.47 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 89.37 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 89.23 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 89.11 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 89.04 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 88.94 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 88.8 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 88.64 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 88.01 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 87.78 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 87.37 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 87.34 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 87.29 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 86.8 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 86.11 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 86.08 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 86.06 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 85.87 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 85.64 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 85.46 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 85.43 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 85.32 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 84.59 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 84.54 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 84.52 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 84.29 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 83.55 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 83.39 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 83.19 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 83.05 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 82.83 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 82.81 | |
| PRK06526 | 254 | transposase; Provisional | 82.76 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 82.46 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 82.45 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 82.45 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 82.01 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 81.83 | |
| PRK08181 | 269 | transposase; Validated | 81.67 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 81.62 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 81.58 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 81.1 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 80.82 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 80.62 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 80.57 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 80.44 |
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-163 Score=1367.85 Aligned_cols=797 Identities=44% Similarity=0.737 Sum_probs=645.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHHHHHHHHHHhHhhhhhccCCCCCCC
Q 002378 9 EAEFPAFPYKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDQKQKQKQKQKYETMIKSDHSFTNN 88 (929)
Q Consensus 9 ~~~~~~FPf~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (929)
....|+|||+||+||++||+.||++|++|++|||||||||||||||||++|+||.+++.+..++......+..+..
T Consensus 6 ~~~~F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~eek~~t~~~~~l~~v~~~~---- 81 (821)
T KOG1133|consen 6 GAIEFPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDFEEKKRTEEARLLETVTGPL---- 81 (821)
T ss_pred cccccCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHhHHhhhhHHHhhhccCCCcc----
Confidence 3334449999999999999999999999999999999999999999999999999998887766654432222211
Q ss_pred CCCCCCCcch----hHHHhhhchhhhHHHHH-HHhh-----hccCCCcccchhhhccccccccccccchhhchhhhhhhh
Q 002378 89 GDCSSNDEPD----WMRNFVVNRDFQAEDAK-IKKK-----KNGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECEN 158 (929)
Q Consensus 89 ~~~~~~~~pd----w~~~~~~~~~~~~e~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (929)
....++|| |++++.+++.......+ ++.. +++.++++.+.. +... ...+.
T Consensus 82 --~d~kde~d~~s~wl~~~~~~~~er~~~~r~l~~~qa~~~~re~r~q~~~~~-------------~e~~--k~ak~--- 141 (821)
T KOG1133|consen 82 --HDEKDESDSSSAWLTQFVQKKEERDLVDRNLKAEQARFKQREERLQQLQHR-------------VQGK--KGAKR--- 141 (821)
T ss_pred --ccccccccchhHHHHHHHHHHHhhccchHHHHHhhchHHHHHHHHHhhhhH-------------Hhhh--hhhhc---
Confidence 22345555 99999887664411111 0000 011111111100 0000 00000
Q ss_pred cccccccCCccccccccccccc-ccccccCCCccccccCCCCCCC-CCCcccccCCccccCcccEEEEecccchhHHHHH
Q 002378 159 LQSINDQSELSDEEFLLEEYES-EEEGAIGGGKSKRKAGAGTISS-SSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFI 236 (929)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~kIiy~SRTHSQL~Qvi 236 (929)
.+.++.+++|.. .++...+ .++.......++ +.|++..++-+.++..+.||||||||||||+|++
T Consensus 142 ----------~~~e~~~reyl~~~e~~~pg---~~eq~e~~~~~e~s~D~e~~~~~~~~e~~p~KI~ycSRTHSQL~Qfv 208 (821)
T KOG1133|consen 142 ----------LRQEEEEREYLLSREMLEPG---RLEQLESGEEAESSSDEEKKVASRVDEDAPVKIYYCSRTHSQLAQFV 208 (821)
T ss_pred ----------cccccccchhcchhhccCcc---chhhhhcccccccccchhhccccCccccCCeeEEEecccchHHHHHH
Confidence 011122333432 1111111 111111111111 1111111111233345589999999999999999
Q ss_pred HHHHhcccCCCeeEEEecccccccccHHHhhcCCchhhHHHHHHHhhhhhhhhhhhhhccccccccccCCCCCCcCcccc
Q 002378 237 KELRKTVFANEIKVVCLGSRKNFCINEEVLRLGNSTHINERCLELQNKKKNEICKIKNLGAEGKVRRTKAFSGCPVLRSH 316 (929)
Q Consensus 237 ~ELrkt~~~~~~~~~~L~SR~~lCin~~v~~~~~~~~~n~~C~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~C~y~~~~ 316 (929)
.|||||.|...+|++.||||++||||++|+++++.+.|||+|.+|++++...+.+ ......++.....||||+..
T Consensus 209 ~ELrKt~f~~~vr~vsL~SRk~LCiNe~V~Klk~~~~iNE~Cldlq~s~~~~~~~-----~~~~~~~~~~~~~Cpf~~~~ 283 (821)
T KOG1133|consen 209 AELKKTPFGKKVRSVSLGSRKNLCINEDVKKLKSVDAINERCLDLQKSKHSLKPS-----KKMRMTRTKATARCPFYNHT 283 (821)
T ss_pred HHHhhcccccCceEEeecchhhcccCHHhccccchhHHHHHHHHHHhccCccccc-----ccchhcccccccCCCccchh
Confidence 9999999998999999999999999999999999999999999999876533221 11223345567789999654
Q ss_pred hhhhccccccccCCCCCHHHHHHhcccCCCCchhhhhcccCCCcEEEeccccccCHHHHHHhCCCCCCCEEEEeCCcChH
Q 002378 317 KLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARESLGLNLKNNIVIIDEAHNLA 396 (929)
Q Consensus 317 ~~~~~~~~~~~~~~v~DIEdL~~~g~~~~~CPYy~sR~~~~~AdII~~pYnyLl~~~~R~~l~i~l~~~ivI~DEAHNL~ 396 (929)
.. .++++.++.+++|||||+.+|+..+.||||++|++++.||||++||+|||+.++|+++||.++++||||||||||.
T Consensus 284 q~--~~~rd~~l~e~~DiEdLv~lGk~~~~CPYY~SR~avp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNli 361 (821)
T KOG1133|consen 284 QM--EDLRDEALSEVLDIEDLVALGKELRGCPYYASRRAVPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLI 361 (821)
T ss_pred HH--HHHHHHHhhhhccHHHHHHhhhhcCCCCchhhhhccccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHH
Confidence 43 3478888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccCHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhccccccccccccCcccCccCCC
Q 002378 397 DSLINMYNAKITLSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAFD 476 (929)
Q Consensus 397 d~~~~~~S~~ls~~~l~~a~~~l~~~~~~~~~~l~~~n~~~~~~l~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 476 (929)
|++.+++|++|+..+|..|+.+|..|..+|+++|++.|++++++++.++..|+.++.+....+. .+
T Consensus 362 dti~smhsa~Is~~ql~~a~~~i~~Y~~rf~~rl~~~N~~~l~ql~~l~~~ll~fl~~~~~~~~--------------~~ 427 (821)
T KOG1133|consen 362 DTICSMHSAEISFSQLCRAHKQIQQYFERFGKRLKAKNLMYLKQLLSLLRRLLKFLDSNCELNG--------------NG 427 (821)
T ss_pred HHHHHhhhhheeHHHHHHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHhhhhhCC--------------cc
Confidence 9999999999999999999999999999999999999999999999999999999877643110 11
Q ss_pred CcccHHHHHhhcccccccHHHHHHHHHHhhhHHHHhhhhhhhhhhccCc--cccCCC-CCcccCCCc-chHHHHHHHHHH
Q 002378 477 SSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGS--VLKDGG-ENYEEGSIL-SGFQSLVDMLIS 552 (929)
Q Consensus 477 ~~~~~~~~l~~~~~~~~nl~~l~~~l~~~~~~~kl~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~-~~l~~~~~fl~~ 552 (929)
..+..++||+..++|++|++++++|++.+++++|+.||.+.+.+..... .+.... +..+..... +.|..+.+||.+
T Consensus 428 ~~~~~~dfl~~~~id~iNL~kl~~Yi~~S~i~rKv~G~~~r~~~~~s~plq~l~~~~~~~~ee~~~~ps~l~~l~~FL~~ 507 (821)
T KOG1133|consen 428 ESLMRNDFLFSSGIDNINLFKLLDYIEKSKIARKVDGFGERLSEVFSQPLQSLQKKRVEAEEESQLKPSPLFELSSFLGA 507 (821)
T ss_pred cccchhhhhhhcCccceeHHHHHHHHHHhhHHHHhcchhhcchhhccchhhHhhhccccchhcccCCCchhHHHHHHHHH
Confidence 2344569999999999999999999999999999999998876321110 000000 000111111 579999999999
Q ss_pred hcCCCCCceEEEeecCCCCCCCCCCcCceEEEEecChhHHHHHHHHhhceEEEeccCCCChhhHHHhhCCCCCCCceeee
Q 002378 553 LTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFF 632 (929)
Q Consensus 553 l~~~~~d~~v~~~~~~~~~~~~~~~~~~~L~~~cl~ps~~f~~l~~~~~svILtSGTLsP~~~f~~~L~~~~~~~~i~~~ 632 (929)
|++.++||++++++..+ ++|+|..|+|+..|.+++.+||+|||++|||+|++.|...||++.+ +++..+
T Consensus 508 LTn~~~dGri~~~k~~s----------~~lky~lL~pA~~f~evv~earavvLAGGTMeP~~e~~e~L~~~~~-~~i~~f 576 (821)
T KOG1133|consen 508 LTNNNEDGRIFYSKQGS----------GTLKYMLLNPAKHFAEVVLEARAVVLAGGTMEPVDELREQLFPGCP-ERISPF 576 (821)
T ss_pred HhCCCCCCcEEEeccCC----------ceEEEEecCcHHHHHHHHHHhheeeecCCccccHHHHHHHhcccch-hhccce
Confidence 99999999999987542 4899999999999999999999999999999999999999999876 688899
Q ss_pred ecCCccCCCCceEEEeecCCCCCceeeeecccCChHHHHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhH
Q 002378 633 SCSHIVPPESILPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILD 712 (929)
Q Consensus 633 ~~~hvi~~~~~~~~iv~~gp~g~~l~~~y~~R~~~~~~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~ 712 (929)
+|.||||++|+++++|+.||+|.+|.|+|+.|.+++++++||..|.+++.+|||||+||||||+||.+++++|++.|++.
T Consensus 577 sc~Hvip~e~il~~vv~~gpsg~p~eftf~~R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ 656 (821)
T KOG1133|consen 577 SCSHVIPPENILPLVVSSGPSGQPLEFTFETRESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILA 656 (821)
T ss_pred ecccccChhheeeeeeccCCCCCceEEEeeccCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCCCCC
Q 002378 713 RIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSP 792 (929)
Q Consensus 713 ~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp~~ 792 (929)
+|..+|+||.|+++. .+++|+.|+.++..+ .|||||||+|||+||||||+|++|||||||||||||+
T Consensus 657 ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g-----------~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~ 723 (821)
T KOG1133|consen 657 RIVGKKKVFYEPKDT--VEDVLEGYAEAAERG-----------RGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNI 723 (821)
T ss_pred HhhccchhhccCccc--HHHHHHHHHHHhhcC-----------CCeEEEEEeccccccccccccccccEEEEeecCCCCC
Confidence 999999999999855 899999999999865 6999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccCCCCCccCCccccccccCCcccccccccccCCCchhhHhhHHHHHHHHhhcccccCCCCeEEEE
Q 002378 793 SNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAIL 872 (929)
Q Consensus 793 ~d~~v~~k~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~a~ravnQaiGR~IRh~~D~g~ii 872 (929)
.|+++++||+|++.+..++ +.|++||++.||+||||+|||+|||.+||++|+
T Consensus 724 ~s~EL~er~k~l~~k~~~~----------------------------gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~ 775 (821)
T KOG1133|consen 724 QSVELQERMKHLDGKLPTP----------------------------GAGKELYENLCMKAVNQSIGRAIRHRKDYASIY 775 (821)
T ss_pred CCHHHHHHHHHhhhccCCC----------------------------CchHHHHHHHHHHHHHHHHHHHHhhhccceeEE
Confidence 9999999999999874321 369999999999999999999999999999999
Q ss_pred EEecccccCCCcCCCCCccCCCcHHHHhhcccccCCHHHHHHHHHHHHHHhh
Q 002378 873 LVDLRYASESSKRSCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFKFNK 924 (929)
Q Consensus 873 LlD~R~~~~~~~~~~~~~~~~LP~Wir~~i~~~~~~~~~~~~~l~~Ff~~~~ 924 (929)
|||.||+.+. ..+||+||+.++. +..+|+++++.++.||+.+.
T Consensus 776 LlD~RY~~p~--------~RKLp~WI~~~v~-s~~~~G~~ir~~~~ff~~k~ 818 (821)
T KOG1133|consen 776 LLDKRYARPL--------SRKLPKWIRKRVH-SKAGFGPAIRATRKFFRAKS 818 (821)
T ss_pred EehhhhcCch--------hhhccHHHHhHhc-cccCccHHHHHHHHHHHHhc
Confidence 9999999664 4599999999888 66999999999999998654
|
|
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
| >KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 929 | ||||
| 2vsf_A | 602 | Structure Of Xpd From Thermoplasma Acidophilum Leng | 2e-12 | ||
| 2vsf_A | 602 | Structure Of Xpd From Thermoplasma Acidophilum Leng | 1e-06 | ||
| 4a15_A | 620 | Crystal Structure Of An Xpd Dna Complex Length = 62 | 2e-12 | ||
| 4a15_A | 620 | Crystal Structure Of An Xpd Dna Complex Length = 62 | 1e-06 | ||
| 2vl7_A | 540 | Structure Of S. Tokodaii Xpd4 Length = 540 | 9e-06 | ||
| 3crv_A | 551 | "xpd_helicase" Length = 551 | 2e-05 |
| >pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum Length = 602 | Back alignment and structure |
|
| >pdb|2VSF|A Chain A, Structure Of Xpd From Thermoplasma Acidophilum Length = 602 | Back alignment and structure |
| >pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex Length = 620 | Back alignment and structure |
| >pdb|4A15|A Chain A, Crystal Structure Of An Xpd Dna Complex Length = 620 | Back alignment and structure |
| >pdb|2VL7|A Chain A, Structure Of S. Tokodaii Xpd4 Length = 540 | Back alignment and structure |
| >pdb|3CRV|A Chain A, "xpd_helicase" Length = 551 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Length = 620 | Back alignment and structure |
|---|
Score = 376 bits (967), Expect = e-119
Identities = 133/730 (18%), Positives = 248/730 (33%), Gaps = 161/730 (22%)
Query: 183 EGAIGGGKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKT 242
E G GK+ + S+ L E LKV + RT+SQ Q IKELR
Sbjct: 28 ESPTGSGKT-----IMALKSA--------LQYSSERKLKVLYLVRTNSQEEQVIKELRSL 74
Query: 243 VFANEIKVVCLGSRKNFCINEEV---LRLGNSTHINERCLELQNKKKNEICKIKNLGAEG 299
+I+ + + R N CI + L N+ + + C + +
Sbjct: 75 SSTMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVM------------- 121
Query: 300 KVRRTKAFSGCPVLRSHKLQKGFRNEISQQGALDIEDLVHLGRHMRTCPYYGSRSMVPTA 359
+ CP + + E+ G CPY ++ +P A
Sbjct: 122 ----AGNEAACPYFNFKIRSDETKRFLFD-ELPTAEEFYDYGERNNVCPYESMKAALPDA 176
Query: 360 DLVVLPYQSLLSKSARESL----GLNLKNNIVIIDEAHNLADSLINMYNAKITLSQLENV 415
D+V+ PY L++S E G++ ++I+DEAHNL D ++ + +I++ L
Sbjct: 177 DIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRA 236
Query: 416 HSHLEKYFGRFCSLLGPGNRRYIQTLMVFTRAFLQVLLKEKDENDVRQDSENSTGAKHAF 475
+ Y S + ++ L+ R+ LQ ++ E+
Sbjct: 237 DREAQAYGDPELS-----QKIHVSDLIEMIRSALQSMVSERCGKG--------------- 276
Query: 476 DSSVAINEFLFSLNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYE 535
D + EF+ + I N + ++ + N ++ Y + +
Sbjct: 277 DVRIRFQEFMEYMRIMNKRSEREIRSL--LNYLYLFGEYVEN-------------EKEKV 321
Query: 536 EGSILSGFQSLVDMLISLTNNDGDGRIIISKARPISSGQQGQQGGYLKYVMLTGEKVFSE 595
S S+ +I+ ++ D + I GGY++ L +
Sbjct: 322 GKVPFSYCSSVASRIIAFSDQDEEKYAAILSPE---------DGGYMQAACLDPSGILEV 372
Query: 596 IVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESILPVALSCGPTGK 655
+ E I GTL P + + + F I PPE+ ++
Sbjct: 373 LKE--SKTIHMSGTLDPFDFYSDITGF-----EIPFKKIGEIFPPEN---RYIAYYD--- 419
Query: 656 SFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIM 715
Y + ++ + ++ +++ V + IV+FPS+ ++RV + +
Sbjct: 420 GVSSKYDTLDE-KELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS----FEHMK 474
Query: 716 KKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFS 775
+ + + ++ S+LK++++ + + AV GG++SEGINF
Sbjct: 475 EYRGIDQKEL-----YSMLKKFRR----------------DHGTIFAVSGGRLSEGINFP 513
Query: 776 DGMGRCIVMVGLPYPSPSNIELLERIKHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGIL 835
I++ GLP+P P + E G+
Sbjct: 514 GNELEMIILAGLPFPRPDA-INRSLFDYYERKY--------------------GKGW--- 549
Query: 836 RSCRGRGKEYYENLCMKAVNQSIGRAIRHINDHAAILLVDLRYASESSKRSCSHPANKLP 895
+ + Q IGR IR D A +++D R R +P
Sbjct: 550 -------EYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRAG---QFR------KFIP 593
Query: 896 RWIKDRLVSS 905
K +S
Sbjct: 594 DMKKTSDPAS 603
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* Length = 620 | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Length = 540 | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} Length = 540 | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Length = 551 | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Length = 551 | Back alignment and structure |
|---|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* Length = 551 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 100.0 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 100.0 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.51 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.46 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.44 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.43 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.42 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.4 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.38 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.36 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.34 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.3 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.29 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.26 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.26 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.21 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.05 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.02 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 98.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 98.68 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 98.66 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 98.65 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 98.6 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 98.57 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 98.53 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 98.34 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.27 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 98.07 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 98.01 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 97.96 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 97.83 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 97.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 97.71 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 97.71 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 97.7 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 97.7 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 97.67 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 97.65 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 97.65 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 97.64 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 97.52 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 97.51 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 97.5 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 97.48 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 97.47 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 97.46 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 97.45 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 97.44 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 97.42 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 97.41 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 97.38 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 97.35 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 97.28 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 97.19 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 96.16 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 97.09 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 96.96 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 96.96 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.92 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.89 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 96.78 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 96.74 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 96.73 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 96.71 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 96.67 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.58 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 96.55 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 96.54 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 96.47 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 96.43 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 96.42 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 96.42 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 96.32 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 96.3 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.3 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 96.27 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 96.26 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 96.25 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 96.16 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 96.04 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 96.04 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 96.02 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 96.02 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 95.97 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 95.91 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 95.83 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 95.72 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 95.7 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 95.69 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 95.63 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 95.57 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 95.55 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 95.51 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 95.23 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 95.15 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 95.13 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 95.12 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 95.05 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 95.04 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 94.63 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 94.52 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 94.5 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 94.36 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 94.32 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 94.31 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 94.31 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 94.2 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 94.16 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 94.05 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 94.01 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 93.83 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 93.81 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 93.59 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 93.58 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 93.23 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 93.12 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 92.92 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 92.0 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 91.93 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 88.89 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 88.62 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 87.88 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 87.36 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 87.25 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 87.24 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 86.75 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 86.69 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 86.49 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 86.22 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 86.12 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 86.11 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 86.11 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 86.06 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 85.84 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 85.02 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 84.44 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 84.4 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 83.83 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 83.76 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 83.63 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 83.01 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 82.43 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 82.39 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 82.39 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 80.89 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 80.74 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 80.36 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 80.16 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 80.09 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 80.08 |
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-92 Score=846.48 Aligned_cols=598 Identities=24% Similarity=0.363 Sum_probs=437.7
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCceeeeCCCCCcchHHHHHHHHHhHHHHHHHHHHHhHhhhhhccCCCCCCCCCCCCCCc
Q 002378 17 YKPYSIQTDFMKALYCSLENGGVSMLESPTGTGKTLSIICSALQWVVDQKQKQKQKQKYETMIKSDHSFTNNGDCSSNDE 96 (929)
Q Consensus 17 f~py~~Q~~~M~~v~~~~~~~~~~~~esptgtgktl~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (929)
|+|||.|.++|.+|+++|.+|+++|+|+|||||||+++|+++|.|+...
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~------------------------------- 50 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER------------------------------- 50 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------------------------------
Confidence 7899999999999999999999999999999999999999999986420
Q ss_pred chhHHHhhhchhhhHHHHHHHhhhccCCCcccchhhhccccccccccccchhhchhhhhhhhcccccccCCccccccccc
Q 002378 97 PDWMRNFVVNRDFQAEDAKIKKKKNGCGLGKTGERKHREISTDTFSHSMEKDKCFTKKECENLQSINDQSELSDEEFLLE 176 (929)
Q Consensus 97 pdw~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (929)
T Consensus 51 -------------------------------------------------------------------------------- 50 (620)
T 4a15_A 51 -------------------------------------------------------------------------------- 50 (620)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccCCCccccccCCCCCCCCCCcccccCCccccCcccEEEEecccchhHHHHHHHHHhcccCCCeeEEEeccc
Q 002378 177 EYESEEEGAIGGGKSKRKAGAGTISSSSDEEEEDGLDEEGEEVLKVYFCSRTHSQLSQFIKELRKTVFANEIKVVCLGSR 256 (929)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIiy~SRTHSQL~Qvi~ELrkt~~~~~~~~~~L~SR 256 (929)
.+||+|+||||+|..|+++||+++.....+++++|.||
T Consensus 51 ------------------------------------------~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr 88 (620)
T 4a15_A 51 ------------------------------------------KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGR 88 (620)
T ss_dssp ------------------------------------------TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCH
T ss_pred ------------------------------------------CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEECC
Confidence 03699999999999999999999876556999999999
Q ss_pred ccccc-cHHHhhcCCchhhHH---HHHHHhhhhhhhhhhhhhccccccccccCCCCCCcCcccchhhhccccccccCCCC
Q 002378 257 KNFCI-NEEVLRLGNSTHINE---RCLELQNKKKNEICKIKNLGAEGKVRRTKAFSGCPVLRSHKLQKGFRNEISQQGAL 332 (929)
Q Consensus 257 ~~lCi-n~~v~~~~~~~~~n~---~C~~l~~~k~~~~~~~~~~~~~~~~~~~~~~~~C~y~~~~~~~~~~~~~~~~~~v~ 332 (929)
++||+ |+.++.+.+ ..+++ .|..+.+..+ ......|+||.+.....+ ..+.+..+++
T Consensus 89 ~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~-----------------~~~~~~C~~~~~~~~~gd-~~~~l~~~~~ 149 (620)
T 4a15_A 89 VNMCILYRMVDDLHE-INAESLAKFCNMKKREVM-----------------AGNEAACPYFNFKIRSDE-TKRFLFDELP 149 (620)
T ss_dssp HHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHH-----------------TTCTTSSTTCSGGGGCHH-HHHHHHHHCC
T ss_pred CcccccChhhhhccc-chhhhHHHHHHHHHhccc-----------------cCCCCCCCcccccCcccc-hhHHhccCCC
Confidence 99999 999987654 45565 8998875421 012257999988643111 1123355789
Q ss_pred CHHHHHHhcccCCCCchhhhhcccCCCcEEEeccccccCHHHHHH----hCCCCCCCEEEEeCCcChHHHHHhhcccccC
Q 002378 333 DIEDLVHLGRHMRTCPYYGSRSMVPTADLVVLPYQSLLSKSARES----LGLNLKNNIVIIDEAHNLADSLINMYNAKIT 408 (929)
Q Consensus 333 DIEdL~~~g~~~~~CPYy~sR~~~~~AdII~~pYnyLl~~~~R~~----l~i~l~~~ivI~DEAHNL~d~~~~~~S~~ls 408 (929)
|+|+|++.|++++.||||.+|+.+.+|||||+||||||||.+|+. ++++++++||||||||||+|+|++++|++|+
T Consensus 150 die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls 229 (620)
T 4a15_A 150 TAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRIS 229 (620)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEE
T ss_pred CHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeC
Confidence 999999999999999999999999999999999999999999875 6889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH-HHHHHHhhccccccccccccCcccCccCCCCcccHHHHHhh
Q 002378 409 LSQLENVHSHLEKYFGRFCSLLGPGNRRYIQTLMVFTR-AFLQVLLKEKDENDVRQDSENSTGAKHAFDSSVAINEFLFS 487 (929)
Q Consensus 409 ~~~l~~a~~~l~~~~~~~~~~l~~~n~~~~~~l~~l~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 487 (929)
..+|..+.+++..+..+. +. +...+..+...+. .+...+...... . .......+++..
T Consensus 230 ~~~l~~~~~~l~~~~~~~---~~--~~~~~~~~~~~~~~~l~~~~~~~~~~---------~-------~~~~~~~~l~~~ 288 (620)
T 4a15_A 230 VESLNRADREAQAYGDPE---LS--QKIHVSDLIEMIRSALQSMVSERCGK---------G-------DVRIRFQEFMEY 288 (620)
T ss_dssp HHHHHHHHHHHHHTTCCE---EE--TTEEHHHHHHHHHHHHHHHHHHHCSS---------S-------CEEECTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---hh--hhHHHHHHHHHHHHHHHHHHHHhhcc---------c-------ccCCChHHHHHH
Confidence 999999999987654321 11 1111222222211 121111111110 0 000000111110
Q ss_pred ----cccccccHHHHHHHHHHhhhHHHHhhhhhhhhhhccCccccCCCCCcccCCCcchHHHHHHHHHHhcCCCCCceEE
Q 002378 488 ----LNIDNINLVKLLKYIKESNIIHKVSGYGDKAASLQKGSVLKDGGENYEEGSILSGFQSLVDMLISLTNNDGDGRII 563 (929)
Q Consensus 488 ----~~~~~~nl~~l~~~l~~~~~~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~fl~~l~~~~~d~~v~ 563 (929)
.+.. ...+.. +..++..+.+.+...... ........+..+.+|+..+...+.++.++
T Consensus 289 ~~~~~~~~---~~~l~~------~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~~~fl~~~~~~~~~~~~~ 349 (620)
T 4a15_A 289 MRIMNKRS---EREIRS------LLNYLYLFGEYVENEKEK----------VGKVPFSYCSSVASRIIAFSDQDEEKYAA 349 (620)
T ss_dssp HHHHHTCC---HHHHHH------HHHHHHHHHHHHHHHHHH----------TTSCCCCHHHHHHHHHHHHHTSCTTTEEE
T ss_pred HHHhhccc---HHHHHH------HHHHHHHHHHHHHhhccc----------cccccccHHHHHHHHHHHHhhcCCCCEEE
Confidence 0111 011111 122232332221111000 00122345778889998885444445666
Q ss_pred EeecCCCCCCCCCCcCceEEEEecChhHHHHHHHHhhceEEEeccCCCChhhHHHhhCCCCCCCceeeeecCCccCCCCc
Q 002378 564 ISKARPISSGQQGQQGGYLKYVMLTGEKVFSEIVEQAHAVILAGGTLQPIEETRERLFPWLSPNKFHFFSCSHIVPPESI 643 (929)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~L~~~cl~ps~~f~~l~~~~~svILtSGTLsP~~~f~~~L~~~~~~~~i~~~~~~hvi~~~~~ 643 (929)
|..... +..|+++|++|+..|+ ++ .+++||||||||+|+++|...||.. ...++++|+|+.+|.
T Consensus 350 ~~~~~~---------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-----~~~~~~~spf~~~~~ 413 (620)
T 4a15_A 350 ILSPED---------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-----IPFKKIGEIFPPENR 413 (620)
T ss_dssp EEECGG---------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-----CCEEECCCCSCGGGE
T ss_pred EEEeCC---------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-----ceeeecCCCCCHHHe
Confidence 654221 2589999999999999 99 9999999999999999999999764 246789999999998
Q ss_pred eEEEeecCCCCCceeeeecccCChHHHHHHHHHHHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEc
Q 002378 644 LPVALSCGPTGKSFDFSYGSRSSSAMIEELGLLLCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFRE 723 (929)
Q Consensus 644 ~~~iv~~gp~g~~l~~~y~~R~~~~~~~~l~~~i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E 723 (929)
.+++++. +.++|..|+ +.+++++++.|.++++.+|||+|||||||.+|+++++.|+. +. .+ |
T Consensus 414 ~~~~~~~------~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~~--~~---~ 475 (620)
T 4a15_A 414 YIAYYDG------VSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF------EH--MK---E 475 (620)
T ss_dssp EEEEECC------C-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------CC--EE---C
T ss_pred EEEEeCC------CCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------cc--hh---c
Confidence 8876632 335677775 57789999999999999999999999999999999999871 21 12 6
Q ss_pred CCC--CchHHHHHHHHHHHHhccCCCCCCCCCCCCCcEEEEEecCccccccccCCCcceEEEEEccCCCCCCCHHHHHHH
Q 002378 724 PRG--NTHVESVLKEYQKTIDTLSSRPKEDSTPLNGAMLLAVVGGKISEGINFSDGMGRCIVMVGLPYPSPSNIELLERI 801 (929)
Q Consensus 724 ~~~--~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPfp~~~d~~v~~k~ 801 (929)
+++ ..+.+.++++|+ + +|+|||||+||+|||||||+|+.+|+|||+|||||+| ||.+++|+
T Consensus 476 ~q~~~~~~~~~ll~~f~-----~-----------~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~ 538 (620)
T 4a15_A 476 YRGIDQKELYSMLKKFR-----R-----------DHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLF 538 (620)
T ss_dssp CTTCCSHHHHHHHHHHT-----T-----------SCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHH
T ss_pred cCCCChhHHHHHHHHhc-----c-----------CCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHH
Confidence 654 347899999997 1 6899999999999999999999999999999999999 69999999
Q ss_pred HHHhhccCCCCCccCCccccccccCCcccccccccccCCCchhh-HhhHHHHHHHHhhcccccCCCCeEEEEEEeccccc
Q 002378 802 KHIEGLGDTNSKTLNTSASDAYYNGDAQAGFGILRSCRGRGKEY-YENLCMKAVNQSIGRAIRHINDHAAILLVDLRYAS 880 (929)
Q Consensus 802 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-y~~~a~ravnQaiGR~IRh~~D~g~iiLlD~R~~~ 880 (929)
+|+++.+ .+|+.| |..+||++|+||+||+|||++|||+|+|+|+||
T Consensus 539 ~~~~~~~-------------------------------g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~-- 585 (620)
T 4a15_A 539 DYYERKY-------------------------------GKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA-- 585 (620)
T ss_dssp HHHHHHH-------------------------------SCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--
T ss_pred HHHHHhh-------------------------------CCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch--
Confidence 9999863 135666 888999999999999999999999999999999
Q ss_pred CCCcCCCCCccCCCcHHHHhhcccccCCHHHHHHHHHHHHHHhhhc
Q 002378 881 ESSKRSCSHPANKLPRWIKDRLVSSTNNYGEVHRLLHQFFKFNKNR 926 (929)
Q Consensus 881 ~~~~~~~~~~~~~LP~Wir~~i~~~~~~~~~~~~~l~~Ff~~~~~~ 926 (929)
++ +++.||+ ++.... ...++.+||.....|
T Consensus 586 ~~-------~~~~LP~-~~~~~~--------~~~~~~~f~~~~~~~ 615 (620)
T 4a15_A 586 GQ-------FRKFIPD-MKKTSD--------PASDIYNFFISAQAR 615 (620)
T ss_dssp GG-------GGGGSTT-CEEESC--------HHHHHHHHHHHHHTC
T ss_pred HH-------HHHhCCc-hhhhcC--------cHHHHHHHHhChhhh
Confidence 55 7899999 765443 356788999877544
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 929 | |||
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 98.01 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 98.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 97.98 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.98 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 97.98 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.92 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 97.84 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.77 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 97.72 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 97.64 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.63 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.51 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 97.45 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 97.44 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.44 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 97.4 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 97.32 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 97.15 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.13 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.12 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 97.09 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 97.07 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.05 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.01 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 96.55 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 96.16 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 95.98 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 95.94 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 95.66 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.43 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 95.13 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 94.95 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 94.59 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 93.1 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 93.07 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.61 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 88.78 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.65 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.89 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.64 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.56 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 85.21 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 83.24 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.54 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 81.56 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 80.1 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 80.09 |
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.01 E-value=1.5e-05 Score=75.94 Aligned_cols=88 Identities=20% Similarity=0.348 Sum_probs=67.5
Q ss_pred HHHHhhccCCCeEEEccCHHHHHHHHHHHHhcChhHHhhcCccEEEcCCCCchHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 002378 677 LCNLVSVVPEGIIVFFPSFEYVERVYGAWKSLGILDRIMKKKHVFREPRGNTHVESVLKEYQKTIDTLSSRPKEDSTPLN 756 (929)
Q Consensus 677 i~~~~~~vpgg~LVfFpSy~~l~~~~~~w~~~~~~~~l~~~K~if~E~~~~~~~~~~l~~y~~~i~~~~~~~~~~~~~~~ 756 (929)
|.++++..++.+|||++|-...+.+.+.++..++ .-..+-......+...+++.|+. +.
T Consensus 20 L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~g~------~~~~~~~~~~~~~r~~~~~~f~~---------------~~ 78 (155)
T d1hv8a2 20 LCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF------KAGAIHGDLSQSQREKVIRLFKQ---------------KK 78 (155)
T ss_dssp HHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC------CEEEECSSSCHHHHHHHHHHHHT---------------TS
T ss_pred HHHHHccCCCCEEEEECchHHHHHHHhhhccccc------ccccccccchhhhhhhhhhhhhc---------------cc
Confidence 4455566778899999999999999998887653 11122223334578889999987 45
Q ss_pred CcEEEEEecCccccccccCCCcceEEEEEccCC
Q 002378 757 GAMLLAVVGGKISEGINFSDGMGRCIVMVGLPY 789 (929)
Q Consensus 757 gaiL~aV~rGk~sEGIDf~d~~~r~ViivGlPf 789 (929)
..+|+|+ ..+++|||+++ ++.||..++|.
T Consensus 79 ~~ilv~T--~~~~~Gid~~~--v~~Vi~~d~p~ 107 (155)
T d1hv8a2 79 IRILIAT--DVMSRGIDVND--LNCVINYHLPQ 107 (155)
T ss_dssp SSEEEEC--TTHHHHCCCSC--CSEEEESSCCS
T ss_pred ceeeeeh--hHHhhhhhhcc--CcEEEEecCCC
Confidence 6889888 89999999999 78899998886
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|