Citrus Sinensis ID: 002385

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------93
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRWISRSTPASASKPKAKQSGGGSPAGATINKPINADESKADLPEKESNPKGDDQNSPAKLILKDRKLIFTLNKQQQAVFKGERHNARDGESAVDNPVERSKEAVKGSSSNDFGTIVMDDEK
ccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHEEcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHccccccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccHHHHcccHHHHHHHcccccccccccccccccccccHHHcccccccccccccccccc
ccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHEHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHEcEEEEEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccHHHccccccccHHHHcccHccccccccccccccccHccccccccccccccccccccHHccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccEcEEEEEcccccccEEEEEccccEEEEEEccccEEEEccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEEcccccccccccEcccccccccccccccccccccccccccccEEEEcccc
MGSSKREIELEEQLKDAgnlllnppspvdEVINLLDKVEHLLANveqapsrsmrDALLptmkglitndllrrsdMDVRLSVTSCISEitritapdspyddELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRkenqdvsptswklGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACIcgsddenpqhghligsenqlatkepdppclgevvhdvdgisksvtsngtaasrnedsVVKDKLSNVLERCSQVErsqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissgrkiakvpgrrksddkgvdcspslnqdskKEALNLTdkmladptsaslksglpdgshhrrgrtkkqgstvnqnadhnslSVSLSTRVeetasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtKKRRRSLVVAISAqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgKEEKKMISKARAkssdrdgshsketpksevkkhsvgkEKKKVISKAIAKssnknhleetptTEIKKKLTARKEEKKKISKAGAksldgncsaetpktgvkrkltagkemdseapalNEQLVGsrikvwwpmdetfykgvvdnydpikkkhrilyadgDEEILNLKKERWELikggssaeeqetdvlkpdgssdilpkgkeEIEFELVNEVKASALKRWIsrstpasaskpkakqsgggspagatinkpinadeskadlpekesnpkgddqnspaklILKDRKLIFTLNKQQQAVFkgerhnardgesavdnpverskeavkgsssndfgtivmddek
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLAnveqapsrsmrdalLPTMKGlitndllrrsdMDVRLSVtsciseitritapdspYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASvrkenqdvsptswklgeKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKsvtsngtaasrnedsvvkDKLSNVLERCsqversqsidakcsagpdtsdslrnvksetepesaprkrgrkpnslmnpeegydhswissGRKIAKvpgrrksddkgvdcspslnqdskKEALNLTDKMLADPTSaslksglpdgshhrrgrtkkqgstvnqnadhnslsvslstRVEEtasgsadfslrkkpedrsdteikhrkrsktneeisqppgygvsekeavvpsadkekplqlsvtkkrrrSLVVAisaqniseasggkkkktskgavkspnidenysedtpkteikrkhtsgkeekkmiskarakssdrdgshsketpksevkkhsvgkekkKVISKAiakssnknhleetptteikkkltarkeekkkiskagaksldgncsaetpktgvkrkltagkemdseapalneqlvgsrikvwWPMDETFYKgvvdnydpiKKKHRILYADGDEEILNLKKERWELIKggssaeeqetdvlkpdgssdilpkGKEEIEFELVNEVKASALKRWIsrstpasaskpkakqsgggspagatinkpinADESKADLPEkesnpkgddqnspaKLILKDRKLIFTLNKQQQavfkgerhnardgesavdnpverskeavkgsssndfgtivmddek
MGSSKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEAsggkkkktskgavksPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPksevkkhsvgkekkkviskaiakssnknHLEETPTTEIkkkltarkeekkkISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRWISRSTPASASKPKAKQSGGGSPAGATINKPINADESKADLPEKESNPKGDDQNSPAKLILKDRKLIFTLNKQQQAVFKGERHNARDGESAVDNPVERSKEAVKGSSSNDFGTIVMDDEK
***************************VDEVINLLDKVEHLLANV**********ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGS**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELI*******************************FELVNEVKA*ALKRW*********************************************************LILKDRKLIFTLN*************************************************
****************************DEVINLLDKVEHLLA**************LPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKEN*******WKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSD***************LA*******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************GSRIKVWWPMDETFY*********************************************************************************************************************************************************************************************************
**********EEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSV*************VVKDKLSNVLERC*******************************************NSLMNPEEGYDHSWISSGR********************SLNQDSKKEALNLTDKMLADPTS****************************ADHNSLS*************************************************************DKEKPLQLSVTKKRRRSLVVAISAQNI******************PNIDENYSEDTPK*********************************************************AKSSNKNHLEETPTTEIKK*****************KSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRWISR********************GATINKPINADE*****************NSPAKLILKDRKLIFTLNKQQQAVF*****************************SNDFGTIVMDDEK
******EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENP*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGG***************************************************************************************************KLILKDRKLIFTLNKQQ**********************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGSSKREIELEEQLKDAGNLLLNPPSPxxxxxxxxxxxxxxxxxxxxxPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIVACICGSDDENPQHGHLIGSENQLATKEPDPPCLGEVVHDVDGISKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQDSKKEALNLTDKMLADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSVSLSTRVEETASGSADFSLRKKPEDRSDTEIKHRKRSKTNEEISQPPGYGVSEKEAVVPSADKEKPLQLSVTKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDENYSEDTPKTEIKRKHTSGKEEKKMISKARAKSSDRDGSHSKETPKSEVKKHSVGKEKKKVISKAIAKSSNKNHLEETPTTEIKKKLTARKEEKKKISKAGAKSLDGNCSAETPKTGVKRKLTAGKEMDSEAPALNEQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLKKERWELIKGGSSAEEQETDVLKPDGSSDILPKGKEEIEFELVNEVKASALKRWISRSTPASASKPKAKQSGGGSPAGATINKPINADESKADLPEKESNPKGDDQNSPAKLILKDRKLIFTLNKQQQAVFKGERHNARDGESAVDNPVERSKEAVKGSSSNDFGTIVMDDEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query929 2.2.26 [Sep-21-2011]
Q04264 1277 Sister chromatid cohesion yes no 0.185 0.134 0.269 1e-12
Q5F3V3 1330 Sister chromatid cohesion yes no 0.207 0.145 0.263 1e-12
Q9HFF5 1205 Sister chromatid cohesion yes no 0.160 0.123 0.286 1e-12
A4L9P7 1333 Sister chromatid cohesion yes no 0.207 0.144 0.269 2e-12
Q29RF7 1337 Sister chromatid cohesion yes no 0.207 0.144 0.269 2e-12
Q6A026 1332 Sister chromatid cohesion yes no 0.207 0.144 0.269 2e-12
Q5U241 1464 Sister chromatid cohesion N/A no 0.201 0.127 0.243 3e-12
A1L1F4 1320 Sister chromatid cohesion yes no 0.216 0.152 0.245 3e-12
Q4KLU7 1323 Sister chromatid cohesion N/A no 0.210 0.148 0.246 1e-11
Q4VA53 1446 Sister chromatid cohesion no no 0.201 0.129 0.243 2e-11
>sp|Q04264|PDS5_YEAST Sister chromatid cohesion protein PDS5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PDS5 PE=1 SV=1 Back     alignment and function desciption
 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 89/178 (50%), Gaps = 6/178 (3%)

Query: 63  GLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASG 122
            L++  LL+  D+ +R     C+S+I R+ APD+PY D  + + F+L +S FE L     
Sbjct: 58  ALVSRKLLKHKDVGIRAFTACCLSDILRLYAPDAPYTDAQLTDIFKLVLSQFEQLGDQEN 117

Query: 123 RYYMKALSILDTVAKVRSCLLMLDL-ECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMT 181
            Y+++   ++  + + RS +L+ DL   + L++E+F  F    +S  P  +F  +  I+ 
Sbjct: 118 GYHIQQTYLITKLLEYRSIVLLADLPSSNNLLIELFHIFYDPNKS-FPARLFNVIGGILG 176

Query: 182 LVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR 239
            VI E + V  ++LR++       N +  P     G  V + C  ++   L +   +R
Sbjct: 177 EVISEFDSVPLEVLRLIFNKFLTYNPNEIPE----GLNVTSDCGYEVSLILCDTYSNR 230
Essential for the establishment and maintenance of sister chromatid cohesion at centromere proximal and distal regions during S phase. Also required for chromosomal condensation.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|Q5F3V3|PDS5A_CHICK Sister chromatid cohesion protein PDS5 homolog A OS=Gallus gallus GN=PDS5A PE=2 SV=2 Back     alignment and function description
>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pds5 PE=1 SV=1 Back     alignment and function description
>sp|A4L9P7|PDS5A_RAT Sister chromatid cohesion protein PDS5 homolog A OS=Rattus norvegicus GN=Pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q29RF7|PDS5A_HUMAN Sister chromatid cohesion protein PDS5 homolog A OS=Homo sapiens GN=PDS5A PE=1 SV=1 Back     alignment and function description
>sp|Q6A026|PDS5A_MOUSE Sister chromatid cohesion protein PDS5 homolog A OS=Mus musculus GN=Pds5a PE=3 SV=3 Back     alignment and function description
>sp|Q5U241|PD5BB_XENLA Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis GN=pds5b-b PE=2 SV=2 Back     alignment and function description
>sp|A1L1F4|PDS5A_DANRE Sister chromatid cohesion protein PDS5 homolog A OS=Danio rerio GN=pds5a PE=2 SV=1 Back     alignment and function description
>sp|Q4KLU7|PD5AB_XENLA Sister chromatid cohesion protein PDS5 homolog A-B OS=Xenopus laevis GN=pds5a-b PE=1 SV=1 Back     alignment and function description
>sp|Q4VA53|PDS5B_MOUSE Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus GN=Pds5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
255572741635 conserved hypothetical protein [Ricinus 0.617 0.903 0.486 1e-148
224072711901 predicted protein [Populus trichocarpa] 0.607 0.625 0.476 1e-133
449436185820 PREDICTED: uncharacterized protein LOC10 0.409 0.463 0.532 1e-108
224089356 1037 predicted protein [Populus trichocarpa] 0.418 0.375 0.473 4e-97
359476152858 PREDICTED: uncharacterized protein LOC10 0.387 0.419 0.510 4e-96
296082067899 unnamed protein product [Vitis vinifera] 0.387 0.400 0.474 2e-93
147766183 1327 hypothetical protein VITISV_002799 [Viti 0.593 0.415 0.395 1e-90
357467897835 Sister chromatid cohesion protein PDS5-l 0.396 0.440 0.473 7e-89
356515006894 PREDICTED: uncharacterized protein LOC10 0.264 0.275 0.605 1e-86
356507284895 PREDICTED: uncharacterized protein LOC10 0.321 0.334 0.522 5e-86
>gi|255572741|ref|XP_002527303.1| conserved hypothetical protein [Ricinus communis] gi|223533303|gb|EEF35055.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 301/619 (48%), Positives = 399/619 (64%), Gaps = 45/619 (7%)

Query: 7   EIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLIT 66
           EIELE+QLK+AGN LLNPPS +DE++N+LDK+EHLL NVEQAPS+SM+DALLP+MK LI+
Sbjct: 5   EIELEQQLKEAGNRLLNPPSSIDELLNMLDKLEHLLINVEQAPSKSMQDALLPSMKALIS 64

Query: 67  NDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGRYYM 126
           N LLR SD DV++SV SC+SE TRITAPD PY+D+ MKE F+L V+AFE LSH S R YM
Sbjct: 65  NALLRNSDPDVKVSVVSCLSEFTRITAPDPPYNDDHMKEIFELTVAAFEKLSHVSSRCYM 124

Query: 127 KALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLVIDE 186
           KA+SILDTVA+VRSCL+MLDLE D+L++++FQHFLK+IRSNHPH VF AMETIMTL+I+E
Sbjct: 125 KAVSILDTVARVRSCLIMLDLELDELIIKIFQHFLKIIRSNHPHAVFLAMETIMTLIINE 184

Query: 187 SEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDY 246
           S+ +S  LL  LLASVRKENQ  SP +WKLGEKV    AAKLK  +KEA+   G A D+Y
Sbjct: 185 SDTISMGLLTALLASVRKENQSASPIAWKLGEKVIVNSAAKLKPYIKEALHCDGRAFDEY 244

Query: 247 AEIVACICGSDDENPQHGHLIGSENQLATKE---PDPPCLGEVVHDVDGISKSVTSNGTA 303
           A I+A IC  +     H H+ GS + L TKE   PD    GE++H VDGI +S TSNG A
Sbjct: 245 APIIASICQDESHTVVHDHVNGSRDHLVTKEGRPPDAASPGEILHFVDGIPESTTSNGNA 304

Query: 304 ASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEPESAPRKRG 363
           ++R+ ++ + D  +  +E C  ++ S S +A+ +A  +       VK E E  + PRKRG
Sbjct: 305 SARDANNGINDNSTKSMEHCPLIQHSDSTEAQGNADIE-------VKLEMEQGTVPRKRG 357

Query: 364 RKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCS--PSLNQDSKKEALNLTDK 421
            KPNSLMNPEEGYDH WI + RK AKV   RK    G+D     ++ +    E + LT +
Sbjct: 358 WKPNSLMNPEEGYDHCWIPTCRKGAKVSRERKLPYMGIDLCLDSTVPKKHVTELVGLTPE 417

Query: 422 M--LADPTSASLKSGLPDGSHHRRGRTKKQGSTVNQNADHNSLSV--SLSTRVEETASGS 477
              +   ++ S    LPDG+H ++ R KK  S +NQ+AD +SL V   L+T   E A   
Sbjct: 418 TSGIIGASTPSPNQCLPDGTHRKKSRPKKNPSNMNQDADSSSLEVVKVLNTESREKAKAE 477

Query: 478 ADFSLRKKPEDRSDTEIKHRKRS-------KTNEEISQPPGYGVSEKEAVVPSADKEKPL 530
            + SLRK  E RS+ E+K  K+S       KT +  S P    +S+++  + +  +E+P+
Sbjct: 478 YEVSLRKPSERRSNIEVKLHKQSRKIGIAAKTAKWTSLPSANLLSDEKDDILNEPEERPV 537

Query: 531 QLSV---------------TKKRRRSLVVAISAQNISEASGGKKKKTSKGAVKSPNIDEN 575
             S                T  R+ SLV+ +S    +E S  KK K+S       + D N
Sbjct: 538 HQSTQIGVRNSQKGRSLVQTDARKISLVIGVSNVRAAEESRIKKSKSS-------DRDGN 590

Query: 576 YSEDTPKTEIKRKHTSGKE 594
           + E+ P  ++KRK T  KE
Sbjct: 591 HKEEIPNKKLKRKRTPRKE 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224072711|ref|XP_002303844.1| predicted protein [Populus trichocarpa] gi|222841276|gb|EEE78823.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436185|ref|XP_004135874.1| PREDICTED: uncharacterized protein LOC101213167 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224089356|ref|XP_002308702.1| predicted protein [Populus trichocarpa] gi|222854678|gb|EEE92225.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359476152|ref|XP_002282819.2| PREDICTED: uncharacterized protein LOC100260975 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082067|emb|CBI21072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147766183|emb|CAN67967.1| hypothetical protein VITISV_002799 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357467897|ref|XP_003604233.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] gi|355505288|gb|AES86430.1| Sister chromatid cohesion protein PDS5-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356515006|ref|XP_003526192.1| PREDICTED: uncharacterized protein LOC100790092 isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356507284|ref|XP_003522398.1| PREDICTED: uncharacterized protein LOC100809147 isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query929
TAIR|locus:2116787873 AT4G31880 [Arabidopsis thalian 0.622 0.662 0.340 1.2e-100
TAIR|locus:2200557990 AT1G15940 [Arabidopsis thalian 0.566 0.531 0.347 7.5e-94
TAIR|locus:2169058 1607 AT5G47690 [Arabidopsis thalian 0.241 0.139 0.441 6.6e-65
TAIR|locus:2025712774 AT1G80810 [Arabidopsis thalian 0.433 0.520 0.374 4.2e-63
TAIR|locus:2183750 395 AT5G10950 "AT5G10950" [Arabido 0.235 0.554 0.333 9.3e-22
UNIPROTKB|E2R7R4 1337 PDS5A "Uncharacterized protein 0.207 0.144 0.269 5.3e-13
UNIPROTKB|Q29RF7 1337 PDS5A "Sister chromatid cohesi 0.207 0.144 0.269 8.5e-13
UNIPROTKB|F1NIQ3 1330 PDS5A "Sister chromatid cohesi 0.207 0.145 0.263 2.8e-12
UNIPROTKB|Q5F3V3 1330 PDS5A "Sister chromatid cohesi 0.207 0.145 0.263 2.8e-12
RGD|1307094 1333 Pds5a "PDS5, regulator of cohe 0.207 0.144 0.269 3.1e-12
TAIR|locus:2116787 AT4G31880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 752 (269.8 bits), Expect = 1.2e-100, Sum P(2) = 1.2e-100
 Identities = 208/611 (34%), Positives = 319/611 (52%)

Query:     4 SKREIELEEQLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKG 63
             S  + ELE Q+ +AG  L++PPS +DE+++ LDK+   LA VEQ+P  SM++AL P MKG
Sbjct:     2 SDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMKG 61

Query:    64 LITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFENLSHASGR 123
             L+   L + SD+DV+++V +CISEITRITAPD+PYDD+ MKE F+L VS+FE+L   S R
Sbjct:    62 LVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSSR 121

Query:   124 YYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAAMETIMTLV 183
              Y K +SIL+TVAKVRSC++MLDLECD L++EMFQHFLK IR +H   VF++ME IMTLV
Sbjct:   122 SYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTLV 181

Query:   184 IDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIAL 243
             ++ESED+  ++L  +L SV+K+++ +S  S +L E+V + CA+KLKT L EAV+S G+ L
Sbjct:   182 LEESEDIPSEMLSPILHSVKKDDE-ISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVPL 240

Query:   244 DDYAEIVACICGSDDENPQHGHLIGSENQLAT----KEPDPPCLGEVVH----DV--DGI 293
             D Y+ IVA IC       Q   ++ +E + +     +E +     E+      D   D  
Sbjct:   241 DKYSNIVASICEGTFSALQQDQVVANEKEDSQGHIKRETEVEKAAEISTPERTDAPKDES 300

Query:   294 SKSVTSNGTAASRNEDSVVKDKLSNVLERCSQVERSQSIDAKCSAGPDTSDSLRNVK--- 350
              KS  SNG A  +N+ SV  D +    +  ++ E  Q  + + +   +T++   +V+   
Sbjct:   301 GKSGVSNGVA-QQNDSSVDTDSMKKQDDTGAKDEPQQLDNPRNTDLNNTTEEKPDVEHQI 359

Query:   351 SETEPESAPRKRGRKPNSLMNPEEGYDHSWISSGRKIAKVPGRRKSDDKGVDCSPSLNQD 410
              E E ES+  K+          EE      + S   +   P      D  V  + S   +
Sbjct:   360 EEKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPV-----DSSVTAATSSENE 414

Query:   411 SKKEALNLTDKMLADPT----SASLKSGLPDGSHHRR-GRTKKQGSTVNQNADHNSLSVS 465
               K    L  K   D T    S S+   LP+ S  ++    KK+ S+  +     S++  
Sbjct:   415 KNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESSTEEVKPSASIATE 474

Query:   466 LSTRVEETASGSADFSLRKKPEDRSDTE--IKHRKRSKTNEEISQPPGYGVSEKEAVVPS 523
               +    T+         KK    S T+  +   K+S +  ++++      SEK+ V   
Sbjct:   475 EVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQ-----SEKKVVGSD 529

Query:   524 ADKEKPLQLSVTKKRRRSLVVAISAQNISEAXXXXXXXXXXXXXXXPNIDENYS-EDTPK 582
               +E        KK  R   +   + + S                    +   + E++P 
Sbjct:   530 NAQESTKPKEEKKKPGRGKAIDEESLHTSSGDNEKPAVSSGKLASKSKKEAKQTVEESPN 589

Query:   583 TEIKRKHTSGK 593
             +  KRK + G+
Sbjct:   590 SNTKRKRSLGQ 600
GO:0005634 "nucleus" evidence=ISM
GO:0009507 "chloroplast" evidence=IDA
GO:0005829 "cytosol" evidence=RCA;IDA
GO:0006312 "mitotic recombination" evidence=RCA
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0031048 "chromatin silencing by small RNA" evidence=RCA
GO:0045132 "meiotic chromosome segregation" evidence=RCA
TAIR|locus:2200557 AT1G15940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169058 AT5G47690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025712 AT1G80810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183750 AT5G10950 "AT5G10950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7R4 PDS5A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RF7 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NIQ3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5F3V3 PDS5A "Sister chromatid cohesion protein PDS5 homolog A" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1307094 Pds5a "PDS5, regulator of cohesion maintenance, homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00031506
hypothetical protein (901 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 929
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 100.0
KOG15251266 consensus Sister chromatid cohesion complex Cohesi 99.72
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 98.98
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.46
smart0074361 Agenet Tudor-like domain present in plant sequence 97.27
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 97.21
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 95.84
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 94.53
KOG4675273 consensus Uncharacterized conserved protein, conta 92.35
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 90.25
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 84.44
PF0564168 Agenet: Agenet domain; InterPro: IPR008395 This do 81.69
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-51  Score=490.17  Aligned_cols=246  Identities=34%  Similarity=0.550  Sum_probs=234.4

Q ss_pred             HHHHhccccCCCCCCHHHHHHHHHHHHHHHHhcccCCchhhHHhhHHHHHhhhhhhhccCCCcCeehhhhHHHHHHhhhc
Q 002385           13 QLKDAGNLLLNPPSPVDEVINLLDKVEHLLANVEQAPSRSMRDALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRIT   92 (929)
Q Consensus        13 ~l~~~G~kLisppiS~dELLKRLkkL~~eLs~vDQ~pvdS~~~SL~pl~k~LVs~~LLkHKDkdVRlyVAcCLADILRIy   92 (929)
                      +.-.-||+++..+++++|||+||++|++||+.++|++.+  .++|.|++.||++++||+|+|+|||+||||||+||||||
T Consensus         4 ~~~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~~~--~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~   81 (1266)
T KOG1525|consen    4 QFYPPGCLTSLNPISKDELLKRLKKLANCLASLDQDNLD--LASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIY   81 (1266)
T ss_pred             cccCCCCccccCcccHHHHHHHHHHHHHHHhhcccCchh--HHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHh
Confidence            445679999999999999999999999999999999866  999999999999999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHhhhhceeeeeccCCchHHHHHHHHHHHHHhhcCCchhH
Q 002385           93 APDSPYDDELMKEFFQLAVSAFENLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFV  172 (929)
Q Consensus        93 APDAPYtDdqLKDIFqLfV~qf~~LaD~sSP~F~qy~yLLEtLAeVKS~VLMlDLe~ddLI~eLFktFF~iVr~~hp~kV  172 (929)
                      ||||||++.||+|||+||++||.||.|+.+|||.|||||||+||+||.|++|.|.+|++|+.+||++||+++|.+||.+|
T Consensus        82 aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v  161 (1266)
T KOG1525|consen   82 APEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKV  161 (1266)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHH
Confidence            99999999999999999999999999999999999999999999999888888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcccCCCcHHHHHHHHHHhhccCCCCChhhHHHHHHHHhhchHHHHHHHHHHHHhc-------CCC-Cc
Q 002385          173 FAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAAKLKTNLKEAVQSR-------GIA-LD  244 (929)
Q Consensus       173 ~~~M~dIMs~VIEESE~VP~eLLDvIL~~Ll~~~ks~~PaAy~LA~~VI~~CadKL~p~I~q~fnS~-------Gi~-ld  244 (929)
                      +. |.+||+.+|.|.+.||.++|++||.+|+++.+++.+.|+.||..+|..|++.+.+.|++||+++       +.+ ..
T Consensus       162 ~~-~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~  240 (1266)
T KOG1525|consen  162 FN-MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI  240 (1266)
T ss_pred             HH-HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence            99 9999999999999999999999999999999999999999999999999999999999999984       222 37


Q ss_pred             hhHHHHHHHhccCCCCC
Q 002385          245 DYAEIVACICGSDDENP  261 (929)
Q Consensus       245 ~Y~eIV~sI~q~~s~~l  261 (929)
                      .||+||+.+..+++.+|
T Consensus       241 ~~he~i~~L~~~~p~ll  257 (1266)
T KOG1525|consen  241 KYHELILELWRIAPQLL  257 (1266)
T ss_pred             HHHHHHHHHHHhhHHHH
Confidence            89999999999987765

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query929
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 60.3 bits (145), Expect = 3e-09
 Identities = 75/521 (14%), Positives = 140/521 (26%), Gaps = 163/521 (31%)

Query: 4   SKREIELEEQLKDAGNLLLNPPSPVDEV-INLLDKVEHLLANVEQAPSRSMRDALLPTMK 62
           S       EQ     + L N      +  ++ L     L   + +   R  ++ L+  + 
Sbjct: 106 SMMTRMYIEQR----DRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVL 159

Query: 63  G----LITNDLLRRSDMDVR-------LSVTSCISEITRITAPDSPYDDELMKEFFQLAV 111
           G     +  D+     +  +       L++ +C S  T +         E++++      
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---------EMLQKLLYQID 210

Query: 112 SAFENLSHASGRYYMK------ALSILDTVAKVRSCLLMLDLECDKLVVEMFQH------ 159
             + + S  S    ++       L  L       +CLL+L    +      F        
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 160 ---------FLKVIRSNHPHFVFAAMETIMTLVIDESEDVSWDLLRILLASVRKENQDVS 210
                    FL    + H           MTL  DE + +    L      + +E    +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD----HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 211 PTSWKLGEKVFTKCAAKLKTNLKEAVQSRGIALDDYAEIV-ACICGSDDENPQHGHLIGS 269
           P    +        A  ++  L      + +  D    I+ + +                
Sbjct: 327 PRRLSI-------IAESIRDGLATWDNWKHVNCDKLTTIIESSL---------------- 363

Query: 270 ENQLATKE-----------PDPPCLGEVVHDVDGISKSVTS----NGTAASRNEDSVVKD 314
            N L   E           P              I   + S    +     +++  VV +
Sbjct: 364 -NVLEPAEYRKMFDRLSVFPP---------SAH-IPTILLSLIWFDVI---KSDVMVVVN 409

Query: 315 KLSN--VLERCSQVERSQSIDAKCSAGPDTSDSLRNVKSETEP-------ESAPRKRGRK 365
           KL    ++E+    E + SI       P     L+ VK E E        +     +   
Sbjct: 410 KLHKYSLVEK-QPKESTISI-------PSIYLELK-VKLENEYALHRSIVDHYNIPKTFD 460

Query: 366 PNSLM-NPEEGY--------------------------DHSWISSGRKIAKVPGRRKSDD 398
            + L+    + Y                          D  ++   +KI      R    
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKI------RHDST 512

Query: 399 KGVDCSPSLN--QDSKKEALNLTDKMLADPTSASLKSGLPD 437
                   LN  Q  K     + D    DP    L + + D
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN---DPKYERLVNAILD 550
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 96.95
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 96.94
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 96.82
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 96.81
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 96.8
3s6w_A54 Tudor domain-containing protein 3; methylated argi 96.75
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 96.71
3qii_A85 PHD finger protein 20; tudor domain, structural ge 96.56
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 96.45
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 96.41
2d9t_A78 Tudor domain-containing protein 3; structural geno 96.2
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 95.13
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 96.1
2eqj_A66 Metal-response element-binding transcription facto 96.06
1ssf_A156 Transformation related protein 53 binding protein 96.01
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 94.93
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 93.54
2eqk_A85 Tudor domain-containing protein 4; structural geno 93.06
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 92.03
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 90.97
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 90.84
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 90.49
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 90.48
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 89.79
2diq_A110 Tudor and KH domain-containing protein; tudor doma 89.69
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 89.34
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 87.81
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 86.76
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 86.38
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 85.02
3ntk_A169 Maternal protein tudor; tudor domain, OB-fold, GER 84.65
2hqx_A246 P100 CO-activator tudor domain; human P100 tudor d 83.94
1qgr_A876 Protein (importin beta subunit); transport recepto 83.71
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 82.61
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 82.46
4b9w_A201 TDRD1, tudor domain-containing protein 1; replicat 82.1
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 81.8
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 81.47
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=96.95  E-value=0.0012  Score=58.06  Aligned_cols=46  Identities=15%  Similarity=0.325  Sum_probs=39.6

Q ss_pred             ccccCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCCCcceeeecC
Q 002385          710 EQLVGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYADGDEEILNLK  757 (929)
Q Consensus       710 e~lVG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDDGD~E~L~L~  757 (929)
                      .=-||.+|.-.|. |+.||.|+|++.+.. +...|.|+|+..|.|...
T Consensus         9 ~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~   54 (74)
T 2equ_A            9 DFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM   54 (74)
T ss_dssp             CCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG
T ss_pred             CCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEecCCeEEecHH
Confidence            3448999999999 999999999999975 789999999987877543
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Back     alignment and structure
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus} Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 929
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 0.002
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 36/263 (13%), Positives = 76/263 (28%), Gaps = 39/263 (14%)

Query: 11  EEQLKDAGN----------LLLNPPSPVDEV-----INLLDKVEHLLANVEQAPSRSMRD 55
           +++L+              +L    S  +       + L + V+    N     +  ++ 
Sbjct: 32  QQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKS 91

Query: 56  ALLPTMKGLITNDLLRRSDMDVRLSVTSCISEITRITAPDSPYDDELMKEFFQLAVSAFE 115
             L         + +  S   +R +V   I+ I            +L+ +   L  S   
Sbjct: 92  ECL---------NNIGDSSPLIRATVGILITTIASKGELQ--NWPDLLPKLCSLLDSEDY 140

Query: 116 NLSHASGRYYMKALSILDTVAKVRSCLLMLDLECDKLVVEMFQHFLKVIRSNHPHFVFAA 175
           N           A   L  + +  + +L  D+  D+ +  M   FL+  + + P     A
Sbjct: 141 NTCEG-------AFGALQKICEDSAEILDSDVL-DRPLNIMIPKFLQFFKHSSPKIRSHA 192

Query: 176 METIMTLVIDESEDVSWDLLRILLASVRKENQDVSPTSWKLGEKVFTKCAA----KLKTN 231
           +   +   I          +     ++     D  P   K   +           +L  +
Sbjct: 193 VAC-VNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH 251

Query: 232 LKEAVQSRGIALDDYAEIVACIC 254
           +   V+       D  E VA   
Sbjct: 252 MHNIVEYMLQRTQDQDENVALEA 274

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query929
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 96.96
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 95.42
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 95.41
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 94.24
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 93.5
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 92.32
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 89.77
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 89.6
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 89.1
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 87.86
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 82.46
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 82.05
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00068  Score=54.55  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             cCCeEEEeeCCCCceEEEEEEEecCCCCeEEEEcCC-CcceeeecC
Q 002385          713 VGSRIKVWWPMDETFYKGVVDNYDPIKKKHRILYAD-GDEEILNLK  757 (929)
Q Consensus       713 VG~RVkV~WP~D~~wY~G~V~syd~~tkkH~V~YDD-GD~E~L~L~  757 (929)
                      ||..|-..|+.|+.||.|+|...++..+...|.|.| |..|.+.+.
T Consensus         5 vG~~c~A~~~~D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~   50 (60)
T d2d9ta1           5 PGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLS   50 (60)
T ss_dssp             TTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGG
T ss_pred             cCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHH
Confidence            789999999999999999999999988889999987 999988765
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure