Citrus Sinensis ID: 002400

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------
MATADSTQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS
ccccHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHcc
ccccHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccHHHHcHcccccccEEEEccccEEEEEcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcc
MATADSTQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSrmlsssslpeCRAMSAILLRkhltrddstsfiftrlapstqaNLKSVLLVQLQNETNKSIIKKICDAVSELAAsvlpdgdwpelipFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNClpslgekerfLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAeavfpgflaapeWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLnsfqdphpRVRWAAINAIGQlstdlgpelqtqFHHRLLPALVgamddfqnprvqAHAASAVLNfsenctpdiltpyLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLqgsqmeaddpttSYMLQAWARLCKCLgqefipymsvvmppllqsaqlkpdviitsadsdvdiddedesiqtitlgdkrigiKTSVLEEKATACNMLCCYADelkegffpwidqvaptLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKgqsqgrneSYVKQLTDYIIPALVEALHKEPEIDICASMLDALNesiqgkdktAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLeacndkhpdvrqAAVYGIGVcaefggsvfkplvgealsrldfvirhpnalhsdnvmAYDNAVSALGKICQFHRDSIDAAQVVPAWLsclplkgdlIEAKVVHAQLCSMversdgeilgpnhqylPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLqqslppstlastwsslqPQQQLALQSILSS
MATADSTQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSadsdvdiddedesiqtitlgdkrigikTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAvekgqsqgrnesYVKQLTDYIIPALVEALHKEPEIDICASMLDALNEsiqgkdktaeeRRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS
MATADSTQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFAlnlsrmlsssslPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSaqealellielaatePRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPdviitsadsdvdiddedesiQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINllrqlqqslppstlasTWsslqpqqqlalqsilss
**********************************************************************CRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEAL**********ALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDA*QVMEVL**************TSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDID***ESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELL******************YVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQ****TAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLR********************************
*****************NPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLS******CRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS
*********ELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAV*********ESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSL**************************
*****STQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS
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MATADSTQQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query927 2.2.26 [Sep-21-2011]
O744761095 Importin subunit beta-3 O yes no 0.719 0.609 0.323 1e-106
Q8BKC51097 Importin-5 OS=Mus musculu yes no 0.432 0.365 0.454 1e-104
O004101097 Importin-5 OS=Homo sapien yes no 0.432 0.365 0.454 1e-104
O605181105 Ran-binding protein 6 OS= no no 0.433 0.363 0.434 5e-95
Q8BIV31105 Ran-binding protein 6 OS= no no 0.433 0.363 0.437 2e-94
P323371089 Importin subunit beta-3 O yes no 0.385 0.327 0.392 7e-70
Q54EW31067 Probable importin-5 homol yes no 0.444 0.386 0.288 2e-48
P40069 1113 Importin subunit beta-4 O no no 0.390 0.325 0.244 3e-19
O601001067 Probable importin subunit no no 0.464 0.403 0.225 1e-14
Q8TEX91081 Importin-4 OS=Homo sapien no no 0.418 0.358 0.220 1e-13
>sp|O74476|IMB3_SCHPO Importin subunit beta-3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sal3 PE=3 SV=1 Back     alignment and function desciption
 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 253/781 (32%), Positives = 404/781 (51%), Gaps = 114/781 (14%)

Query: 24  TLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALN-LSRMLSSSSLPECRAMSAILLRKH 82
            L+  L S  N  R+ AE  LS    S      LN L+ +   S  P  R+   +L R+ 
Sbjct: 15  NLVQGLSSPDNTVRNDAEKSLSSDWISQRADLLLNGLAILAYQSEDPAVRSFCLVLCRRI 74

Query: 83  LTR---DDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLP-D 138
             R    DS   +F+ ++  ++ +L+S LL     E+  ++  K+CD ++E+A S+    
Sbjct: 75  SFRTLPGDSELEVFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQ 134

Query: 139 GDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHEVFSKFLGSNNF 198
           G+WPELI  IF  + + ++  +ES    ++ + + +S         +  +F+  L   + 
Sbjct: 135 GEWPELINVIFNAVNSPDESFRESVFRTITSLPRLLS----GQDSAVTPLFTTGLADPSI 190

Query: 199 DLRIAALEATVNFI------------------MNCLPSLGEKE-------------RFLD 227
            +RI+A  A    I                  MN LP L +                  +
Sbjct: 191 RVRISAARAYSAVILESKQSTRDQVIPLLPSLMNILPPLQQDRDSDNLADCLMAITEIAE 250

Query: 228 LLPLMMRTLTEAL----------NKGNESSAQEALELLIELAATEPRFLRK------QLV 271
           + P + + + E++           + + S+ Q ALELL+  +   P   RK      QLV
Sbjct: 251 VFPKLFKPIFESVIAFGLGIIKDKELDNSARQAALELLVCFSEGAPAMCRKSSDYTDQLV 310

Query: 272 --------DVVGSMLQVAE----------------------AEAVF-------------- 287
                   DV G     AE                      AE                 
Sbjct: 311 LQCLLLMTDVAGDPEDEAEELQEWLNTDDLDQDESDANHVVAEQAMDRLSRKLGGKTILP 370

Query: 288 PGFLAAP------EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRW 341
           P F   P      +W + HA L+A++ IAEG  K+M K L +V+ MVL    DPHPRVRW
Sbjct: 371 PSFTWLPRLIPSQKWSERHAALMAISSIAEGAEKLMKKELSRVLDMVLPLLADPHPRVRW 430

Query: 342 AAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDI 401
           AA NA+GQ+STD  P++Q ++  R+L ALV  ++  ++ RVQAHAA+A++NFSE     +
Sbjct: 431 AACNAVGQMSTDFAPDMQVKYPSRILEALVPVLESPES-RVQAHAAAAMVNFSEEADNKV 489

Query: 402 LTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNA 461
           L PYLD I+ +LL LLQ+ K+ VQE A+T +A+VAD++  +F+KY+DA+MP L  +L  A
Sbjct: 490 LEPYLDDILQRLLTLLQSPKRYVQEQAVTTIATVADAAAKKFEKYFDAIMPLLFNVLQQA 549

Query: 462 NDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQA 521
           + K  R LR K+MEC +L+ +AVGK +F   +++++++L ++Q    ++DDP  SY++ A
Sbjct: 550 DGKEFRTLRGKTMECATLIALAVGKQRFLPVSQELIQILGNIQMGITDSDDPQASYLISA 609

Query: 522 WARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKR 581
           W R+C+ LG +F+P++S VMPPLL +A  KPD  I   + D     E +  + I +  ++
Sbjct: 610 WGRICRVLGSDFVPFLSSVMPPLLVAATSKPDFTIIDDEVDESKYSEQDGWEFIPVHGQQ 669

Query: 582 IGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV-PLLKFYFHEEVRKAAVSA 640
           +GI+TS LE+K TA  ML CYA ELK  F P++++V  ++V P LKF+FH+ VR A    
Sbjct: 670 VGIRTSTLEDKCTATEMLVCYAAELKADFDPYVNEVLTSVVLPGLKFFFHDGVRSACCKC 729

Query: 641 MPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESI 700
           +P+LL +  LA        R+ + V +L + I+  L++ +  EP +++ A   +   +S+
Sbjct: 730 IPQLLNARILA------SNRDPAKVNELWEPILRKLLDHIQNEPSVEMLADYFECFYQSL 783

Query: 701 Q 701
           +
Sbjct: 784 E 784
Involved in the nuclear import of cdc25 and mcs1.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
>sp|Q8BKC5|IPO5_MOUSE Importin-5 OS=Mus musculus GN=Ipo5 PE=1 SV=3 Back     alignment and function description
>sp|O00410|IPO5_HUMAN Importin-5 OS=Homo sapiens GN=IPO5 PE=1 SV=4 Back     alignment and function description
>sp|O60518|RNBP6_HUMAN Ran-binding protein 6 OS=Homo sapiens GN=RANBP6 PE=1 SV=2 Back     alignment and function description
>sp|Q8BIV3|RNBP6_MOUSE Ran-binding protein 6 OS=Mus musculus GN=Ranbp6 PE=2 SV=3 Back     alignment and function description
>sp|P32337|IMB3_YEAST Importin subunit beta-3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PSE1 PE=1 SV=2 Back     alignment and function description
>sp|Q54EW3|IPO5_DICDI Probable importin-5 homolog OS=Dictyostelium discoideum GN=DDB_G0291650 PE=3 SV=1 Back     alignment and function description
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KAP123 PE=1 SV=1 Back     alignment and function description
>sp|O60100|IMB4_SCHPO Probable importin subunit beta-4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=kap123 PE=3 SV=1 Back     alignment and function description
>sp|Q8TEX9|IPO4_HUMAN Importin-4 OS=Homo sapiens GN=IPO4 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query927
449463855 1116 PREDICTED: LOW QUALITY PROTEIN: importin 0.980 0.814 0.543 0.0
302802945 1110 hypothetical protein SELMODRAFT_155690 [ 0.987 0.824 0.531 0.0
297812163 1116 EMB2734 [Arabidopsis lyrata subsp. lyrat 0.980 0.814 0.525 0.0
356525274 1114 PREDICTED: importin-5-like [Glycine max] 0.976 0.812 0.534 0.0
357518889 1117 Ran-binding protein [Medicago truncatula 0.981 0.814 0.523 0.0
2977397721002 unnamed protein product [Vitis vinifera] 0.675 0.624 0.686 0.0
2977464761002 unnamed protein product [Vitis vinifera] 0.687 0.635 0.665 0.0
302755826 1110 hypothetical protein SELMODRAFT_140234 [ 0.745 0.622 0.582 0.0
225441589 1116 PREDICTED: importin-5 [Vitis vinifera] 0.734 0.610 0.601 0.0
225435754 1116 PREDICTED: importin-5 [Vitis vinifera] 0.744 0.618 0.585 0.0
>gi|449463855|ref|XP_004149646.1| PREDICTED: LOW QUALITY PROTEIN: importin-5-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 607/1117 (54%), Positives = 736/1117 (65%), Gaps = 208/1117 (18%)

Query: 8    QQELALLLGPNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSS 67
            Q +LA +LGP+ A FETL+S+LMSSSNE RS AE++ +  +Q+ PD+ +L L+ +L  S 
Sbjct: 10   QAQLAAILGPDLAPFETLLSHLMSSSNEQRSQAELVFNLCKQTDPDSLSLKLAHLLQFSP 69

Query: 68   LPECRAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDA 127
             PE RAM+A+LLRK LTRDDS  +++ RL PS+Q++LKS+LL  +Q E +KSI KK+CD 
Sbjct: 70   QPEARAMAAVLLRKQLTRDDS--YLWPRLNPSSQSSLKSILLSCIQREDSKSISKKLCDT 127

Query: 128  VSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSEVLIAHGDTLHE 187
            VSELA+ +LPD  WPEL+PF+FQC+ + + K+QESA LI +++S ++ + L+ H   LH 
Sbjct: 128  VSELASGILPDNGWPELLPFMFQCVSSDSPKLQESAFLIFAQLSHYIGDTLVPHIKHLHG 187

Query: 188  VFSKFLGS--NNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNE 245
            VF + L S  ++ D++IAAL A ++FI  CL +  +++RF DLLP MMRTL EALN G E
Sbjct: 188  VFLQCLTSTTSSTDVKIAALNAVISFI-QCLSNSADRDRFQDLLPPMMRTLMEALNNGQE 246

Query: 246  SSAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAV--L 303
            ++AQEALELLIELA TEPRFLR+QLVDVVGSMLQ+AEAE++  G        +H A+  +
Sbjct: 247  ATAQEALELLIELAGTEPRFLRRQLVDVVGSMLQIAEAESLDEG-------TRHLAIEFV 299

Query: 304  IALAQIAE---GCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAIN------------AIG 348
            I LA+  E   G  + M + + ++ ++++    D      W A              ++G
Sbjct: 300  ITLAEARERAPGMMRKMPQFISRLFAILMKLLLDIEDDPAWHAAENEDEDAGETSNYSVG 359

Query: 349  Q-----LSTDLGPELQTQFHHRLLPALVGA------------------------------ 373
            Q     L+  LG          L PA +                                
Sbjct: 360  QECLDRLAISLGGNTIVPVASELFPAYLATPEWQNRHAALIAMAQIAEGCSKVMIKNLEQ 419

Query: 374  -----MDDFQN--PRVQAHAASAVLNFSENCTPDILTPY--------------------- 405
                 ++ FQ+  PRV+  A +A+   S +  PD+   Y                     
Sbjct: 420  VVAMVLNSFQDPHPRVRWAAINAIGQLSTDLGPDLQVQYHQQVLPALATAMDDFQNPRVQ 479

Query: 406  ----------------------LDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQF 443
                                  LDGIV KLL+LLQNGKQMVQEGALTALASVADSSQ  F
Sbjct: 480  AHAASAVLNFSENCTPDILTPYLDGIVGKLLLLLQNGKQMVQEGALTALASVADSSQEYF 539

Query: 444  QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSL 503
            QKYYDAVMPYLKAILVNA DK+ RMLRAKSMECISLVGMAVGK+KFRDDAKQVMEVLMSL
Sbjct: 540  QKYYDAVMPYLKAILVNATDKTKRMLRAKSMECISLVGMAVGKEKFRDDAKQVMEVLMSL 599

Query: 504  QGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSA-DSD 562
            QGSQMEADDPTTSYMLQAWARLCKCLGQ+F+PYMSVVMPPLLQSAQLKPDV ITSA   +
Sbjct: 600  QGSQMEADDPTTSYMLQAWARLCKCLGQDFLPYMSVVMPPLLQSAQLKPDVTITSADSDN 659

Query: 563  VDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 622
               D +D+S++TITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV
Sbjct: 660  DIEDSDDDSMETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLV 719

Query: 623  PLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHK 682
            PLLKFYFHEEVRKAAVSAMPEL+RSAKLAVEKG +QGRNE+Y+KQL+DYI+PALVEALHK
Sbjct: 720  PLLKFYFHEEVRKAAVSAMPELMRSAKLAVEKGLAQGRNETYIKQLSDYIVPALVEALHK 779

Query: 683  EPEIDICASMLDALNESIQ-------------------------------------GKDK 705
            E + +IC+SML+ALNE +Q                                      +D 
Sbjct: 780  EHDTEICSSMLEALNECLQISGSLLDESQVRSIVDEIKQVITASSSRKRERAERAKAEDF 839

Query: 706  TAEERRI-------AICIFDDVMEHCREAALKYYDTYLPFLLEACN--------DKHPDV 750
             AEE  +          +FD V E        +  ++LPF  E           DK P+ 
Sbjct: 840  DAEEGELIKEENEQEEEVFDQVGEILGTLIKTFKASFLPFFQELSTYLTPMWGKDKTPEE 899

Query: 751  RQAAV-----------------------------------------YGIGVCAEFGGSVF 769
            R+ A+                                         YG+GVCAEFGGSVF
Sbjct: 900  RRIAICIFDDVAEQCREAALKYYDTYLPFLLEACNDENPDVRQAAVYGLGVCAEFGGSVF 959

Query: 770  KPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCL 829
            KPLVGEALSRL+ V+RHPNA   +NVMAYDNAVSALGKICQFHRDSID+AQVVPAWL+CL
Sbjct: 960  KPLVGEALSRLNVVLRHPNARQPENVMAYDNAVSALGKICQFHRDSIDSAQVVPAWLNCL 1019

Query: 830  PLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASR 889
            P+KGDL+EAK+VH QLCS+VERSD E+LGPN+QYLPKI  +FAEVLC GKDL TEQTA R
Sbjct: 1020 PIKGDLVEAKIVHDQLCSLVERSDVELLGPNNQYLPKIAAVFAEVLCAGKDLATEQTAGR 1079

Query: 890  MINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILS 926
            MINLLRQ+Q +LPPSTL STWSSLQP QQLALQSI+S
Sbjct: 1080 MINLLRQMQPNLPPSTLPSTWSSLQPXQQLALQSIIS 1116

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302802945|ref|XP_002983226.1| hypothetical protein SELMODRAFT_155690 [Selaginella moellendorffii] gi|300148911|gb|EFJ15568.1| hypothetical protein SELMODRAFT_155690 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|297812163|ref|XP_002873965.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] gi|297319802|gb|EFH50224.1| EMB2734 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356525274|ref|XP_003531251.1| PREDICTED: importin-5-like [Glycine max] Back     alignment and taxonomy information
>gi|357518889|ref|XP_003629733.1| Ran-binding protein [Medicago truncatula] gi|355523755|gb|AET04209.1| Ran-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297739772|emb|CBI29954.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297746476|emb|CBI16532.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302755826|ref|XP_002961337.1| hypothetical protein SELMODRAFT_140234 [Selaginella moellendorffii] gi|300172276|gb|EFJ38876.1| hypothetical protein SELMODRAFT_140234 [Selaginella moellendorffii] Back     alignment and taxonomy information
>gi|225441589|ref|XP_002281591.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225435754|ref|XP_002285720.1| PREDICTED: importin-5 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query927
TAIR|locus:21832191116 emb2734 "AT5G19820" [Arabidops 0.483 0.401 0.775 4.5e-266
MGI|MGI:19178221097 Ipo5 "importin 5" [Mus musculu 0.592 0.500 0.368 2.3e-129
UNIPROTKB|F1RP441067 IPO5 "Uncharacterized protein" 0.591 0.513 0.369 4.3e-128
UNIPROTKB|O004101097 IPO5 "Importin-5" [Homo sapien 0.591 0.499 0.367 7e-128
UNIPROTKB|H0Y8C61099 IPO5 "Importin-5" [Homo sapien 0.591 0.498 0.367 7e-128
RGD|13087151097 Ipo5 "importin 5" [Rattus norv 0.592 0.500 0.366 8.9e-128
UNIPROTKB|E2RF061089 IPO5 "Uncharacterized protein" 0.592 0.504 0.368 1.1e-127
UNIPROTKB|F1MPE51110 IPO5 "Uncharacterized protein" 0.591 0.493 0.366 1e-126
FB|FBgn00870131105 Karybeta3 "Karyopherin beta 3" 0.607 0.509 0.361 6.5e-123
UNIPROTKB|O605181105 RANBP6 "Ran-binding protein 6" 0.591 0.495 0.353 2.5e-119
TAIR|locus:2183219 emb2734 "AT5G19820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1785 (633.4 bits), Expect = 4.5e-266, Sum P(2) = 4.5e-266
 Identities = 349/450 (77%), Positives = 384/450 (85%)

Query:   274 VGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQ 333
             +G    V  A   F  +LAA EWQKHHA LIALAQIAEGCSKVMIKNLDQVVSMVL+ FQ
Sbjct:   370 LGGNTIVPVAYQQFSAYLAASEWQKHHASLIALAQIAEGCSKVMIKNLDQVVSMVLSQFQ 429

Query:   334 DPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNF 393
              PHPRVRWAAINAIGQLSTDLGP+LQ Q H R+LPAL  AMDDFQNPRVQAHAASAVLNF
Sbjct:   430 SPHPRVRWAAINAIGQLSTDLGPDLQNQHHERVLPALAAAMDDFQNPRVQAHAASAVLNF 489

Query:   394 SENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPY 453
             SENCTP+IL+PYLDG+VSKLLVLLQNGKQMVQEGALTALASVADSSQ  FQKYYD VMPY
Sbjct:   490 SENCTPEILSPYLDGVVSKLLVLLQNGKQMVQEGALTALASVADSSQEHFQKYYDTVMPY 549

Query:   454 LKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDP 513
             LK IL+NA DKS RMLRAKSMECISLVGMAVGKD+F++DA+QVMEVLMSLQGSQMEADDP
Sbjct:   550 LKTILMNATDKSKRMLRAKSMECISLVGMAVGKDRFKEDARQVMEVLMSLQGSQMEADDP 609

Query:   514 TTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPXXXXXXXXXXXXXXXXXXXX- 572
              TSYMLQAWARLCKCLGQ+F+PYM VVMPPLLQSAQLKP                     
Sbjct:   610 ITSYMLQAWARLCKCLGQDFLPYMKVVMPPLLQSAQLKPDVTITSADSEDEAEDSDDESM 669

Query:   573 QTITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEE 632
             +TI LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEE
Sbjct:   670 ETIILGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEE 729

Query:   633 VRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASM 692
             VR+AAVSAMPEL+RSAKLA+EKG+SQGR+ SY+KQL+DYIIPA++EALHKEP+ +IC SM
Sbjct:   730 VRRAAVSAMPELMRSAKLAIEKGESQGRDLSYLKQLSDYIIPAMLEALHKEPDTEICVSM 789

Query:   693 LDALNESIQGKDKTAEERRIAICIFDDVME 722
             L+A+NE +Q      +E +I   I D++ +
Sbjct:   790 LEAINECLQISGNLLDEGKIR-SIVDEIKQ 818
GO:0009793 "embryo development ending in seed dormancy" evidence=NAS
GO:0016829 "lyase activity" evidence=ISS
GO:0030089 "phycobilisome" evidence=ISS
GO:0005618 "cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
GO:0052541 "plant-type cell wall cellulose metabolic process" evidence=RCA
GO:0052546 "cell wall pectin metabolic process" evidence=RCA
MGI|MGI:1917822 Ipo5 "importin 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1RP44 IPO5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O00410 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H0Y8C6 IPO5 "Importin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1308715 Ipo5 "importin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RF06 IPO5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MPE5 IPO5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0087013 Karybeta3 "Karyopherin beta 3" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|O60518 RANBP6 "Ran-binding protein 6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__2011__AT5G19820.1
annotation not avaliable (1116 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
scaffold_101731.1
annotation not avaliable (895 aa)
   •    0.409

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query927
pfam1364688 pfam13646, HEAT_2, HEAT repeats 3e-06
COG5215858 COG5215, KAP95, Karyopherin (importin) beta [Intra 7e-05
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 2e-04
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 4e-04
cd00020120 cd00020, ARM, Armadillo/beta-catenin-like repeats 0.001
pfam0298531 pfam02985, HEAT, HEAT repeat 0.001
pfam1275597 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding 0.002
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 0.003
>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats Back     alignment and domain information 
 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 21/106 (19%)

Query: 284 EAVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAA 343
           EA+    L+ P+ +   A   AL ++             + +  +L   +DP P VR AA
Sbjct: 2   EALLEALLSDPDPEVRAAAARALGEL----------GDPEALPALLELLKDPDPEVRRAA 51

Query: 344 INAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASA 389
             A+G+L                LPAL+  + D  +  V+A AASA
Sbjct: 52  AEALGKLGDP-----------EALPALLELLQDDDDAVVRAAAASA 86

This family includes multiple HEAT repeats. Length = 88
>gnl|CDD|227540 COG5215, KAP95, Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats Back     alignment and domain information
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat Back     alignment and domain information
>gnl|CDD|193231 pfam12755, Vac14_Fab1_bd, Vacuolar 14 Fab1-binding region Back     alignment and domain information
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 927
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 100.0
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 100.0
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 100.0
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 100.0
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 100.0
KOG1824 1233 consensus TATA-binding protein-interacting protein 100.0
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 100.0
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.98
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.97
KOG1824 1233 consensus TATA-binding protein-interacting protein 99.97
KOG22741005 consensus Predicted importin 9 [Intracellular traf 99.95
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 99.95
COG5656970 SXM1 Importin, protein involved in nuclear import 99.92
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.91
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 99.9
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.88
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 99.88
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.87
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.86
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 99.84
COG5101 1053 CRM1 Importin beta-related nuclear transport recep 99.83
KOG1242569 consensus Protein containing adaptin N-terminal re 99.82
KOG1242569 consensus Protein containing adaptin N-terminal re 99.78
KOG2021980 consensus Nuclear mRNA export factor receptor LOS1 99.77
KOG09151702 consensus Uncharacterized conserved protein [Funct 99.76
COG5657947 CSE1 CAS/CSE protein involved in chromosome segreg 99.75
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.75
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.71
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.7
KOG19911010 consensus Nuclear transport receptor RANBP7/RANBP8 99.66
KOG0212675 consensus Uncharacterized conserved protein [Funct 99.65
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.64
PTZ00429746 beta-adaptin; Provisional 99.64
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 99.63
KOG0212 675 consensus Uncharacterized conserved protein [Funct 99.62
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 99.61
PTZ00429746 beta-adaptin; Provisional 99.59
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 99.51
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.51
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.49
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 99.43
PRK09687280 putative lyase; Provisional 99.42
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.42
PRK09687280 putative lyase; Provisional 99.39
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 99.34
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 99.34
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.31
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 99.29
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.28
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 99.28
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 99.26
KOG2081559 consensus Nuclear transport regulator [Intracellul 99.26
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 99.25
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 99.24
KOG1992960 consensus Nuclear export receptor CSE1/CAS (import 99.22
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 99.19
KOG2022982 consensus Nuclear transport receptor LGL2 (importi 99.17
KOG04141251 consensus Chromosome condensation complex Condensi 99.16
KOG1993978 consensus Nuclear transport receptor KAP120 (impor 99.14
KOG1062 866 consensus Vesicle coat complex AP-1, gamma subunit 99.12
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 99.11
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 99.09
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.07
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 99.07
KOG4224550 consensus Armadillo repeat protein VAC8 required f 99.07
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 99.05
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 99.04
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 99.03
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.99
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 98.9
KOG10201692 consensus Sister chromatid cohesion protein SCC2/N 98.9
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 98.89
KOG4224550 consensus Armadillo repeat protein VAC8 required f 98.86
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 98.86
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.85
KOG2020 1041 consensus Nuclear transport receptor CRM1/MSN5 (im 98.85
PF0381077 IBN_N: Importin-beta N-terminal domain; InterPro: 98.78
KOG1820815 consensus Microtubule-associated protein [Cytoskel 98.77
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.75
KOG1077 938 consensus Vesicle coat complex AP-2, alpha subunit 98.73
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 98.7
KOG1078 865 consensus Vesicle coat complex COPI, gamma subunit 98.67
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.67
KOG2021 980 consensus Nuclear mRNA export factor receptor LOS1 98.67
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 98.63
COG5096757 Vesicle coat complex, various subunits [Intracellu 98.61
KOG1240 1431 consensus Protein kinase containing WD40 repeats [ 98.6
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.52
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.52
PF05804708 KAP: Kinesin-associated protein (KAP) 98.51
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 98.49
KOG45241014 consensus Uncharacterized conserved protein [Funct 98.48
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 98.47
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.44
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 98.44
PF05804708 KAP: Kinesin-associated protein (KAP) 98.44
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.42
KOG1058 948 consensus Vesicle coat complex COPI, beta subunit 98.41
PF04510174 DUF577: Family of unknown function (DUF577); Inter 98.4
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.37
KOG4535728 consensus HEAT and armadillo repeat-containing pro 98.37
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 98.35
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 98.32
KOG2956516 consensus CLIP-associating protein [General functi 98.3
KOG2956516 consensus CLIP-associating protein [General functi 98.29
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 98.28
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 98.25
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 98.24
KOG45241014 consensus Uncharacterized conserved protein [Funct 98.23
KOG2062929 consensus 26S proteasome regulatory complex, subun 98.2
KOG2032533 consensus Uncharacterized conserved protein [Funct 98.19
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 98.16
KOG2259823 consensus Uncharacterized conserved protein [Funct 98.15
TIGR02270410 conserved hypothetical protein. Members are found 98.09
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 98.07
PF03378435 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I 98.07
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.05
KOG4653982 consensus Uncharacterized conserved protein [Funct 98.03
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 98.02
PF08167165 RIX1: rRNA processing/ribosome biogenesis 98.0
COG5656 970 SXM1 Importin, protein involved in nuclear import 97.98
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 97.97
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.96
KOG2032533 consensus Uncharacterized conserved protein [Funct 97.95
KOG0414 1251 consensus Chromosome condensation complex Condensi 97.95
COG5096757 Vesicle coat complex, various subunits [Intracellu 97.93
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.93
PF05004309 IFRD: Interferon-related developmental regulator ( 97.93
KOG1820815 consensus Microtubule-associated protein [Cytoskel 97.9
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 97.9
KOG4653982 consensus Uncharacterized conserved protein [Funct 97.9
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.85
PF05004309 IFRD: Interferon-related developmental regulator ( 97.84
PF13251182 DUF4042: Domain of unknown function (DUF4042) 97.8
KOG1293678 consensus Proteins containing armadillo/beta-caten 97.77
TIGR02270410 conserved hypothetical protein. Members are found 97.77
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.74
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 97.71
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.7
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 97.69
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.69
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.66
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.66
COG1413335 FOG: HEAT repeat [Energy production and conversion 97.65
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 97.64
PF14500262 MMS19_N: Dos2-interacting transcription regulator 97.63
KOG0891 2341 consensus DNA-dependent protein kinase [Replicatio 97.62
COG50981128 Chromosome condensation complex Condensin, subunit 97.54
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 97.53
KOG2933334 consensus Uncharacterized conserved protein [Funct 97.49
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.47
KOG4413524 consensus 26S proteasome regulatory complex, subun 97.46
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.44
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 97.43
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 97.41
PF08167165 RIX1: rRNA processing/ribosome biogenesis 97.37
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 97.36
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 97.36
KOG2062 929 consensus 26S proteasome regulatory complex, subun 97.35
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.33
COG5116926 RPN2 26S proteasome regulatory complex component [ 97.3
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 97.16
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 97.15
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 97.12
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 97.11
KOG0567289 consensus HEAT repeat-containing protein [General 97.08
KOG04131529 consensus Uncharacterized conserved protein relate 97.03
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 97.03
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 97.0
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 96.99
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 96.84
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.75
KOG2759442 consensus Vacuolar H+-ATPase V1 sector, subunit H 96.74
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 96.74
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 96.7
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 96.7
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.67
KOG19491005 consensus Uncharacterized conserved protein [Funct 96.66
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 96.64
KOG2025 892 consensus Chromosome condensation complex Condensi 96.64
KOG2025892 consensus Chromosome condensation complex Condensi 96.61
KOG0567289 consensus HEAT repeat-containing protein [General 96.6
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.56
PF11864464 DUF3384: Domain of unknown function (DUF3384); Int 96.53
KOG2149393 consensus Uncharacterized conserved protein [Funct 96.52
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 96.46
PF05536543 Neurochondrin: Neurochondrin 96.43
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 96.41
COG51011053 CRM1 Importin beta-related nuclear transport recep 96.38
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 96.31
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 96.31
PF11865160 DUF3385: Domain of unknown function (DUF3385); Int 96.28
PF13251182 DUF4042: Domain of unknown function (DUF4042) 96.26
KOG1517 1387 consensus Guanine nucleotide binding protein MIP1 96.19
KOG18371621 consensus Uncharacterized conserved protein [Funct 96.18
PF01603409 B56: Protein phosphatase 2A regulatory B subunit ( 96.09
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.09
COG5098 1128 Chromosome condensation complex Condensin, subunit 96.08
PF05536543 Neurochondrin: Neurochondrin 96.07
KOG2549576 consensus Transcription initiation factor TFIID, s 96.07
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 96.02
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 95.99
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 95.93
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 95.91
KOG1822 2067 consensus Uncharacterized conserved protein [Funct 95.91
KOG1410 1082 consensus Nuclear transport receptor RanBP16 (impo 95.78
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 95.75
PF12726727 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y 95.74
KOG1243690 consensus Protein kinase [General function predict 95.73
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 95.69
KOG1293678 consensus Proteins containing armadillo/beta-caten 95.62
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 95.61
KOG2122 2195 consensus Beta-catenin-binding protein APC, contai 95.52
cd00256429 VATPase_H VATPase_H, regulatory vacuolar ATP synth 95.45
KOG1243690 consensus Protein kinase [General function predict 95.42
smart00638574 LPD_N Lipoprotein N-terminal Domain. 95.34
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 95.03
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 94.98
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.85
COG5116926 RPN2 26S proteasome regulatory complex component [ 94.84
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 94.82
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 94.79
KOG2081559 consensus Nuclear transport regulator [Intracellul 94.64
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 94.62
KOG1222791 consensus Kinesin associated protein KAP [Intracel 94.53
KOG2549576 consensus Transcription initiation factor TFIID, s 94.44
KOG1048717 consensus Neural adherens junction protein Plakoph 94.41
PF1036392 DUF2435: Protein of unknown function (DUF2435) 94.33
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 94.33
PF13001501 Ecm29: Proteasome stabiliser; InterPro: IPR024372 94.2
KOG2137700 consensus Protein kinase [Signal transduction mech 94.14
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 94.14
cd03561133 VHS VHS domain family; The VHS domain is present i 94.04
KOG2149393 consensus Uncharacterized conserved protein [Funct 94.04
PF12530234 DUF3730: Protein of unknown function (DUF3730) ; I 93.95
KOG2137700 consensus Protein kinase [Signal transduction mech 93.73
COG5657 947 CSE1 CAS/CSE protein involved in chromosome segreg 93.5
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 93.49
PF14868559 DUF4487: Domain of unknown function (DUF4487) 93.25
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 93.21
PF12054441 DUF3535: Domain of unknown function (DUF3535); Int 92.96
PF1036392 DUF2435: Protein of unknown function (DUF2435) 92.92
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 92.91
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 92.84
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 92.75
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 92.68
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 92.45
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 92.33
KOG0413 1529 consensus Uncharacterized conserved protein relate 92.24
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 92.18
KOG1949 1005 consensus Uncharacterized conserved protein [Funct 92.03
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 92.0
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 91.87
smart00638574 LPD_N Lipoprotein N-terminal Domain. 91.81
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 91.55
KOG18481610 consensus Uncharacterized conserved protein [Funct 91.33
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 91.25
KOG2213 460 consensus Apoptosis inhibitor 5/fibroblast growth 90.01
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 89.97
KOG1048717 consensus Neural adherens junction protein Plakoph 89.92
KOG3961262 consensus Uncharacterized conserved protein [Funct 89.92
KOG1566342 consensus Conserved protein Mo25 [Function unknown 89.55
PF0051441 Arm: Armadillo/beta-catenin-like repeat; InterPro: 89.26
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 89.1
KOG3961262 consensus Uncharacterized conserved protein [Funct 89.08
PF01347618 Vitellogenin_N: Lipoprotein amino terminal region; 89.05
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 88.94
PF14225262 MOR2-PAG1_C: Cell morphogenesis C-terminal 88.67
COG5369743 Uncharacterized conserved protein [Function unknow 88.52
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 88.44
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 88.24
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 88.07
KOG0889 3550 consensus Histone acetyltransferase SAGA, TRRAP/TR 87.69
KOG09291514 consensus Guanine nucleotide exchange factor [Intr 87.66
PF08389148 Xpo1: Exportin 1-like protein; InterPro: IPR013598 87.43
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 86.91
KOG4199461 consensus Uncharacterized conserved protein [Funct 86.89
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 86.4
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 86.16
KOG18511710 consensus Uncharacterized conserved protein [Funct 86.01
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 85.9
cd03561133 VHS VHS domain family; The VHS domain is present i 85.72
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 85.42
KOG1877819 consensus Putative transmembrane protein cmp44E [G 85.37
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 85.35
PF12333102 Ipi1_N: Rix1 complex component involved in 60S rib 85.29
PF1191990 DUF3437: Domain of unknown function (DUF3437); Int 85.29
KOG4500604 consensus Rho/Rac GTPase guanine nucleotide exchan 85.27
KOG18371621 consensus Uncharacterized conserved protein [Funct 85.25
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 85.25
PF04388668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 84.87
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 84.79
KOG1848 1610 consensus Uncharacterized conserved protein [Funct 84.4
PF0757192 DUF1546: Protein of unknown function (DUF1546); In 83.95
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 83.58
PF14631 1426 FancD2: Fanconi anaemia protein FancD2 nuclease; P 83.38
COG5218885 YCG1 Chromosome condensation complex Condensin, su 83.27
PF11701157 UNC45-central: Myosin-binding striated muscle asse 82.53
KOG2973353 consensus Uncharacterized conserved protein [Funct 82.35
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 82.22
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 82.17
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 82.05
PF08713213 DNA_alkylation: DNA alkylation repair enzyme; Inte 81.8
KOG2199462 consensus Signal transducing adaptor protein STAM/ 81.24
KOG1222791 consensus Kinesin associated protein KAP [Intracel 81.11
KOG2085457 consensus Serine/threonine protein phosphatase 2A, 80.94
KOG2973353 consensus Uncharacterized conserved protein [Funct 80.82
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.1e-120  Score=995.05  Aligned_cols=890  Identities=46%  Similarity=0.760  Sum_probs=832.4

Q ss_pred             CCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhcCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400           17 PNPAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSSSSLPECRAMSAILLRKHLTRDDSTSFIFTRL   96 (927)
Q Consensus        17 ~~~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l   96 (927)
                      |+.+.+.++++.+.||||++|++||+.|+....+.|  .+..|.+++.++.++++||+|||++|+.+.++      |+.+
T Consensus         1 ~~~~~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~--~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~------w~~l   72 (1075)
T KOG2171|consen    1 MDSAPLEQLLQQLLSPDNEVRRQAEEALETLAKTEP--LLPALAHILATSADPQVRQLAAVLLRKLLTKH------WSRL   72 (1075)
T ss_pred             CchhHHHHHHHHhcCCCchHHHHHHHHHHHhhcccc--hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH------hhcC
Confidence            467899999999999999999999999997666434  67899999999999999999999999999998      9999


Q ss_pred             CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400           97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE  176 (927)
Q Consensus        97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~  176 (927)
                      +.+.|++||+.||..+.+|+.+.||+++|++++.||+.++|. +||+++++|+++.+|+++..|+.|+.+|..+.+.++.
T Consensus        73 ~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~  151 (1075)
T KOG2171|consen   73 SAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGN  151 (1075)
T ss_pred             CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhcc
Confidence            999999999999999999999999999999999999999995 9999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCC-CchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 002400          177 VLIAHGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLP-SLGEKERFLDLLPLMMRTLTEALNKGNESSAQEALELL  255 (927)
Q Consensus       177 ~l~~~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a~~~l  255 (927)
                      .+.+|++.+.++|.++++|++..||..|+++++.++ .+.+ ++..+..|..++|.++..+...+..+|.+.+..+++.+
T Consensus       152 ~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~-~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l  230 (1075)
T KOG2171|consen  152 TLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFA-EYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEAL  230 (1075)
T ss_pred             ccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHH-HHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHH
Confidence            999999999999999999996669999999999999 8874 56678899999999999999999999999999999999


Q ss_pred             HHHHccCcHHHHHHHHHHHHHHHHHhhcc---------------------------------------------------
Q 002400          256 IELAATEPRFLRKQLVDVVGSMLQVAEAE---------------------------------------------------  284 (927)
Q Consensus       256 ~~l~~~~~~~~~~~l~~ll~~ll~~~~~~---------------------------------------------------  284 (927)
                      .++++..|+++++++..++.++++++.|+                                                   
T Consensus       231 ~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~e  310 (1075)
T KOG2171|consen  231 IELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDE  310 (1075)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchh
Confidence            99999999999999999999998877543                                                   


Q ss_pred             ----------------------------------------CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHH
Q 002400          285 ----------------------------------------AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQV  324 (927)
Q Consensus       285 ----------------------------------------~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l  324 (927)
                                                              +++..++++++|+.|+||+++|+.+++||++.+.++++++
T Consensus       311 w~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~I  390 (1075)
T KOG2171|consen  311 WSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKI  390 (1075)
T ss_pred             hccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                                                    5677889999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccC
Q 002400          325 VSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTP  404 (927)
Q Consensus       325 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~  404 (927)
                      ++.++++|+|++|+||++||.++|++++++.|++++.+++.+.|.|+..+++..+++|+.+|+.++.+|.+.+.++.+.|
T Consensus       391 l~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p  470 (1075)
T KOG2171|consen  391 LPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP  470 (1075)
T ss_pred             HHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            99999999999999999999999999999999998889999999999999997789999999999999999999999999


Q ss_pred             chHHHHH-HHHHHhcCCChhHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHh
Q 002400          405 YLDGIVS-KLLVLLQNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMA  483 (927)
Q Consensus       405 ~l~~l~~-~L~~~l~~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~  483 (927)
                      |++.+|+ .+..+++++++.+|+.++.+|++++.+++..|.||++.+||.|.+.+++..+++.+.+|++.++|++.++.+
T Consensus       471 YLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A  550 (1075)
T KOG2171|consen  471 YLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARA  550 (1075)
T ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence            9999999 555566788899999999999999999999999999999999999999988889999999999999999999


Q ss_pred             hCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCC
Q 002400          484 VGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDV  563 (927)
Q Consensus       484 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~  563 (927)
                      +|++.|.|++.++++.+..+..+..+.+++.++|.+.+|+++|+.+|++|.||++.+||.+++....+++....|++ |+
T Consensus       551 VGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~~~p~~~~~d~~-d~  629 (1075)
T KOG2171|consen  551 VGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTARLDPDVALSDEE-DE  629 (1075)
T ss_pred             hhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhccCCcccCcCch-hh
Confidence            99999999999999999988766777889999999999999999999999999999999999999999887766332 23


Q ss_pred             CCCCCcchhhhhccCCc-eeeechhhHHhHHHHHHHHHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHH
Q 002400          564 DIDDEDESIQTITLGDK-RIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMP  642 (927)
Q Consensus       564 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~  642 (927)
                      +...++++|++...+|+ .++++++++++|..||.+|+.++..++.+|.||++++++..++.+..++|++||++|+.+++
T Consensus       630 e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p  709 (1075)
T KOG2171|consen  630 EEEQDLDGWEVVELGDKENIGIRTSVLDEKETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMP  709 (1075)
T ss_pred             hhccccccchhhccCCceeeeeeehhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            33346788999888887 99999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHhhc---------------------
Q 002400          643 ELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQ---------------------  701 (927)
Q Consensus       643 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~---------------------  701 (927)
                      .++++...++.+|      +.+...+|..+.+.++..+.+|+++++...+++++..|++                     
T Consensus       710 ~ll~~~~~A~~~~------p~~l~~l~~~~~~~l~~~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~  783 (1075)
T KOG2171|consen  710 QLLTCALKACQGG------PEYLKQLWEAIRPALIKALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLA  783 (1075)
T ss_pred             HHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHH
Confidence            9999998876433      5589999999999999999999999999999999999986                     


Q ss_pred             ----------------------------------------------------------------------CCCCChhhHH
Q 002400          702 ----------------------------------------------------------------------GKDKTAEERR  711 (927)
Q Consensus       702 ----------------------------------------------------------------------~~~~~~~~r~  711 (927)
                                                                                            ..+..+. |+
T Consensus       784 ~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~-r~  862 (1075)
T KOG2171|consen  784 QLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVA-RQ  862 (1075)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHH-HH
Confidence                                                                                  5556666 99


Q ss_pred             HHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCC
Q 002400          712 IAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALH  791 (927)
Q Consensus       712 ~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~  791 (927)
                      +|+++++++++++|+...+|.+.++|.++..+.|++|+||++|+|++|.+++++|+.+.|.+...++.|..++..++++.
T Consensus       863 ~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ar~  942 (1075)
T KOG2171|consen  863 WAVCIFDDLIEGCGEASAKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPLART  942 (1075)
T ss_pred             HHHHHHHHHHHhcccccchHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             chhhhHHHHHHHHHHHHHhhcCCCCCHhhHHHHHHhcCCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHH
Q 002400          792 SDNVMAYDNAVSALGKICQFHRDSIDAAQVVPAWLSCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIF  871 (927)
Q Consensus       792 ~~~~~~~~na~~al~~l~~~~~~~~~~~~~l~~~l~~Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~  871 (927)
                      +++..++|||++|++|++.+++..+++++++|.|+++||+++|.+|+...|++|+.|+++++|.+++++++++|+|+.++
T Consensus       943 Ee~~~ateNa~gaiaki~~~~~~~i~vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~i~~v~ 1022 (1075)
T KOG2171|consen  943 EENRRATENAIGAIAKILLFNPNRIPVDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPKILSVC 1022 (1075)
T ss_pred             HHHhHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHHHHHHHHHhhcC
Q 002400          872 AEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSILSS  927 (927)
Q Consensus       872 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~  927 (927)
                      +..+...+ ...++...+++.+++++.+  |...|.+.++.||++.+.+|++.+++
T Consensus      1023 ~~~~~~~~-~~~~~~~~r~~~ilkq~~~--~~~~~~~~~~~L~~~~~~~lq~~~~~ 1075 (1075)
T KOG2171|consen 1023 AESLADKK-IEPRSTLARVIEILKQFLA--PPSQFAALLATLPPDQQQALQAVLNL 1075 (1075)
T ss_pred             HhhhhccC-CCccchHHHHHHHHHHHhc--CHHHHHHHHHhCCHHHHHHHHHHhcC
Confidence            99997653 4445555599999999987  66679999999999999999998864

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2020 consensus Nuclear transport receptor CRM1/MSN5 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03810 IBN_N: Importin-beta N-terminal domain; InterPro: IPR001494 Karyopherins are a group of proteins involved in transporting molecules through the pores of the nuclear envelope Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous [] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG1822 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes [] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only] Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3 Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF14868 DUF4487: Domain of unknown function (DUF4487) Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>KOG1949 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>smart00638 LPD_N Lipoprotein N-terminal Domain Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures] Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG3961 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] Back     alignment and domain information
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal Back     alignment and domain information
>COG5369 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG4199 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>KOG1851 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ] Back     alignment and domain information
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms] Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>KOG1848 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6) Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG2973 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query927
2qmr_A890 Karyopherin Beta2TRANSPORTIN Length = 890 6e-04
2h4m_A865 Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 6e-04
2ot8_A852 Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Len 7e-04
>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN Length = 890 Back     alignment and structure 
Iteration: 1

 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 12/195 (6%)
Query: 295 EWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDL 354
           EW    + ++ L  IAEGC + MI  L +++  ++    D    VR      + + +  +
Sbjct: 410 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 469
Query: 355 GPELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSEN-CTPDILTPYLDGIVSKL 413
             +    +   L+  L+  + D  N RVQ  A SA     E  CT   L PYL  I+  L
Sbjct: 470 VSQPPDTYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE--LVPYLAYILDTL 526
Query: 414 LVLLQNGKQMVQEGALTALASVADSSQGQFQK--YYDAVMPYL--KAILVNANDKSNRML 469
           +      +         A+ ++ADS      K  Y   +MP L  K  ++   DK    L
Sbjct: 527 VFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPL 586
Query: 470 RAKSMECISLVGMAV 484
               +EC+S V  A+
Sbjct: 587 ----LECLSSVATAL 597
>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls Length = 865 Back     alignment and structure
>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex Length = 852 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query927
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 4e-73
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 5e-69
1qgr_A876 Protein (importin beta subunit); transport recepto 3e-62
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-36
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 1e-08
2x1g_F971 Cadmus; transport protein, developmental protein, 9e-27
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-22
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-17
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-16
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-13
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 2e-11
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 1e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-19
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-19
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 8e-15
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-10
2x19_B963 Importin-13; nuclear transport, protein transport; 7e-18
2x19_B963 Importin-13; nuclear transport, protein transport; 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 5e-13
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 4e-05
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 4e-04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 6e-10
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 7e-08
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 2e-07
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 1e-09
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-09
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 6e-09
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 7e-08
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 1e-06
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 9e-09
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 2e-08
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 8e-05
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 2e-08
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 3e-06
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 6e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 1e-07
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 7e-06
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 3e-05
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 7e-07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 1e-06
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 2e-07
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 2e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 3e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 8e-07
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 7e-04
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 3e-07
3oqs_A510 Importin subunit alpha-2; importin alpha, karyophe 7e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-07
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 5e-06
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 2e-05
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 6e-05
3nmz_A458 APC variant protein; protein-protein complex, arma 1e-06
3nmz_A458 APC variant protein; protein-protein complex, arma 4e-04
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 2e-06
3m1i_C 1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 2e-06
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 3e-04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 3e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 3e-06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 1e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-04
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 2e-04
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 7e-06
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 1e-05
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 4e-05
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 1e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 1e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 9e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 1e-04
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 3e-04
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
 Score =  257 bits (657), Expect = 4e-73
 Identities = 99/723 (13%), Positives = 233/723 (32%), Gaps = 63/723 (8%)

Query: 23  ETLISNLMSSSNEHRSHAEVLLSHL------RQSHPDAFALNLSRMLSSSSLPECRAMSA 76
              ++ L+S      + A  L++ +        + P+   + +     +      +  S 
Sbjct: 98  TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKI-MVDNTGAEQPENVKRASL 156

Query: 77  ILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVL 136
           + L       +S       L  S+   L +++      ET+K++     +A+++    + 
Sbjct: 157 LALGY---MCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK 213

Query: 137 PDGDWPELIPFIFQCLVTF----NDKIQESALLILSRMSQFVSEVLIAH-GDTLHEVFSK 191
            + +      ++ Q +       + ++Q +A   L ++       +  +    L+ +   
Sbjct: 214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA 273

Query: 192 FLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEA 251
            + S N  +    +E           ++ E+E  +                   SS ++ 
Sbjct: 274 TMKSPNDKVASMTVE--------FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDV 325

Query: 252 LELLIELAATE----------PRFLRKQLVDVVGSMLQVAEAEAVFP---GFLAAPEWQK 298
           +  L+ L   +                  + +          E V       + A  W+ 
Sbjct: 326 VPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRN 385

Query: 299 HHAVLIALAQIAEGCSKVMIKN-LDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPE 357
             A ++A   I +G  KV     + Q +  +LN   D   +V+      IG+++  +   
Sbjct: 386 REAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAES 445

Query: 358 LQTQFH-HRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVL 416
           +  Q H   ++ A +  + D  +P+V  + +  ++N  E       +P  +   + +  L
Sbjct: 446 IDPQQHLPGVVQACLIGLQD--HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGL 503

Query: 417 LQ-----NGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRA 471
           +      + +   +  A +AL ++ + +     +   ++  ++   L          L  
Sbjct: 504 IGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTL 563

Query: 472 KS------MECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTT--SYMLQAWA 523
           +       ++   L  +A    K     + V ++LM L    +E  D       +  A +
Sbjct: 564 EDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS 623

Query: 524 RLCKCLGQEFIPYMSVVMPPLLQSAQ-LKPDVIITSADSDVDIDDEDESI------QTIT 576
            L   LG+ F  Y+    P LL++   +   V IT+     DI +  E          + 
Sbjct: 624 ALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMN 683

Query: 577 LGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKA 636
           +  + I    +  E K    ++    A  +   F P+++ +    V            +A
Sbjct: 684 VLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEA 743

Query: 637 AVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYI---IPALVEALHKEPEIDICASML 693
               +  L       V            +      I   I  + E      E     + +
Sbjct: 744 LDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAV 803

Query: 694 DAL 696
             +
Sbjct: 804 GLI 806
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Length = 971 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Length = 963 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Length = 960 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Length = 980 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Length = 1049 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Length = 1073 Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Length = 591 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query927
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 100.0
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 100.0
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 100.0
2x19_B963 Importin-13; nuclear transport, protein transport; 100.0
1qgr_A876 Protein (importin beta subunit); transport recepto 100.0
2x1g_F971 Cadmus; transport protein, developmental protein, 100.0
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 100.0
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 100.0
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 100.0
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 100.0
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 100.0
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 100.0
3a6p_A1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.93
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.86
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 99.86
1wa5_C960 Importin alpha RE-exporter; nuclear transport/comp 99.86
2x19_B963 Importin-13; nuclear transport, protein transport; 99.86
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.85
2x1g_F971 Cadmus; transport protein, developmental protein, 99.85
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 99.84
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.82
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 99.81
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.81
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.81
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.78
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 99.78
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.77
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 99.76
3m1i_C1049 Exportin-1; heat repeat, GTP-binding, nucleotide-b 99.75
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 99.75
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 99.74
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.74
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.73
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 99.71
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.7
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.7
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.69
3ibv_A980 Exportin-T; karyopherin, heat repeat, cytoplasm, n 99.67
4hat_C1023 Exportin-1; heat repeat, nuclear export, RAN-ranbp 99.66
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 99.65
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 99.64
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 99.62
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.6
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 99.6
2vgl_A621 Adaptor protein complex AP-2, alpha 2 subunit; cyt 99.58
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 99.53
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 99.52
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.49
3gjx_A1073 Exportin-1; transport, cytoplasm, nucleus, RNA-bin 99.46
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.44
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 99.42
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.41
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.38
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 99.34
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 99.32
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.24
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.24
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 99.22
3nmz_A458 APC variant protein; protein-protein complex, arma 99.21
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 99.21
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 99.19
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.16
3a6p_A 1204 Exportin-5; exportin-5, RANGTP, nuclearexport, imp 99.16
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 99.16
4ady_A 963 RPN2, 26S proteasome regulatory subunit RPN2; prot 99.14
3nmz_A458 APC variant protein; protein-protein complex, arma 99.12
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.12
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 99.1
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.07
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 99.05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 99.05
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 99.03
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.98
2db0_A253 253AA long hypothetical protein; heat repeats, hel 98.97
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.88
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 98.87
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 98.87
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.85
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 98.84
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.81
4ady_A963 RPN2, 26S proteasome regulatory subunit RPN2; prot 98.67
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.62
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 98.52
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 98.5
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.48
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.42
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.38
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 98.37
3b2a_A265 TON_1937, putative uncharacterized protein; heat-r 98.33
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 98.32
1vsy_5997 Proteasome activator BLM10; 20S proteasome BLM10, 98.15
3tjz_B355 Coatomer subunit gamma; protein trafficking, golgi 98.15
3grl_A651 General vesicular transport factor P115; vesicle t 98.1
4gmo_A684 Putative uncharacterized protein; ARM, heat, solen 98.05
3oc3_A800 Helicase MOT1, MOT1; regulation of transcription, 97.92
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 97.83
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.73
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 97.72
3grl_A651 General vesicular transport factor P115; vesicle t 97.51
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.4
3u0r_A507 Apoptosis inhibitor 5; heat repeat, armadillo repe 97.07
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 97.04
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.78
1vsy_4799 Proteasome activator BLM10; 20S proteasome BLM10, 96.56
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 96.38
3l9t_A240 Putative uncharacterized protein SMU.31; hypotheti 96.1
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 96.01
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 95.89
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 94.97
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.94
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 94.49
1w9c_A321 CRM1 protein, exportin 1; nuclear protein, nuclear 94.48
4atg_A196 TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton 94.22
3fga_B403 Serine/threonine-protein phosphatase 2A 56 kDa RE 94.04
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 93.59
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 93.0
3gs3_A257 Symplekin, LD45768P; helix-turn-helix heat repeat 92.57
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 91.96
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 91.41
1x5b_A163 Signal transducing adaptor molecule 2; VHS domain, 91.06
2npp_B449 PP2A, B subunit, serine/threonine-protein phosphat 90.36
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 90.36
3o2t_A386 Symplekin; heat repeat, scaffold, protein binding; 89.71
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 89.4
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 88.92
1lsh_A1056 Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro 88.89
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 86.82
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 86.09
1juq_A171 ADP-ribosylation factor binding protein GGA3; prot 86.04
1ho8_A480 Vacuolar ATP synthase subunit H; heat repeat, hydr 85.65
3g2s_A149 C-terminal fragment of sortilin-related receptor; 85.58
2jak_A392 Serine/threonine-protein phosphatase 2A 56 kDa RE 85.29
3s4w_B 1323 Protein FACD2, fanconi anemia group D2 protein hom 85.13
3zyq_A226 Hepatocyte growth factor-regulated tyrosine kinas 84.09
1dvp_A220 HRS, hepatocyte growth factor-regulated tyrosine k 83.13
2fv2_A268 RCD1 required for cell differentiation1 homolog; a 82.44
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 81.5
3ldz_A140 STAM-1, signal transducing adapter molecule 1; ubi 80.9
1elk_A157 Target of MYB1; superhelix of helices, endocytosis 80.17
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=100.00  E-value=8.2e-67  Score=635.14  Aligned_cols=770  Identities=15%  Similarity=0.212  Sum_probs=637.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHh--cCCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400           19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLS--SSSLPECRAMSAILLRKHLTRDDSTSFIFTRL   96 (927)
Q Consensus        19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~--~~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l   96 (927)
                      .+++.++|+.++|||+++|++||++|+++++ +|+ |...|..++.  ++.++.+|++|+++|||.+.++      |..+
T Consensus        12 ~~~l~~~l~~~~s~d~~~r~~Ae~~L~~~~~-~p~-~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~------w~~~   83 (852)
T 4fdd_A           12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH------FQNF   83 (852)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHTT-SHH-HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS------GGGC
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc------cCCC
Confidence            3578888888899999999999999999987 687 6789999988  4788999999999999999998      9999


Q ss_pred             CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400           97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE  176 (927)
Q Consensus        97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~  176 (927)
                      +++.+..||+.+++.|.++ ++.||++++.+++.|++.+++ +.||++++.+.++++++++.+|++++.+|+.+++..++
T Consensus        84 ~~~~~~~ik~~ll~~l~~~-~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~  161 (852)
T 4fdd_A           84 PNGVTDFIKSECLNNIGDS-SPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE  161 (852)
T ss_dssp             CHHHHHHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999865 889999999999999999876 89999999999999999999999999999999998876


Q ss_pred             HHHH-----hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcCChhHHHHH
Q 002400          177 VLIA-----HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNESSAQEA  251 (927)
Q Consensus       177 ~l~~-----~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~~~~~~~~a  251 (927)
                      .+..     .++.+++.+.++++++++.||..|++++..++ ...+     ..+...++.+++.+...+.+++++++..+
T Consensus       162 ~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~-~~~~-----~~~~~~~~~~l~~l~~~~~d~~~~vr~~a  235 (852)
T 4fdd_A          162 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI-ISRT-----QALMLHIDSFIENLFALAGDEEPEVRKNV  235 (852)
T ss_dssp             HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTT-TTTC-----HHHHTSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hccc-----HHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            6543     37889999999999999999999999998887 4321     23555667777777777778888999999


Q ss_pred             HHHHHHHHccCcHHHHHHHHHHHHHHHHHhhcc--------------------------Cc-------hhhhh-------
Q 002400          252 LELLIELAATEPRFLRKQLVDVVGSMLQVAEAE--------------------------AV-------FPGFL-------  291 (927)
Q Consensus       252 ~~~l~~l~~~~~~~~~~~l~~ll~~ll~~~~~~--------------------------~~-------i~~~l-------  291 (927)
                      ++.+..+++..+..+.++++.+++.++..+.++                          ++       +.+.+       
T Consensus       236 ~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~  315 (852)
T 4fdd_A          236 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI  315 (852)
T ss_dssp             HHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHH
Confidence            999999998888888888888888887765432                          11       11112       


Q ss_pred             ----CC-----------cchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhch
Q 002400          292 ----AA-----------PEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGP  356 (927)
Q Consensus       292 ----~~-----------~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  356 (927)
                          .+           .+|.+|.+|..+++.++...++   ..++.+++.+...++|++|.+|.+|++++|.+++..+.
T Consensus       316 ~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~  392 (852)
T 4fdd_A          316 ILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ  392 (852)
T ss_dssp             HHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH
T ss_pred             HHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH
Confidence                23           5799999999999999988765   56778899999999999999999999999999998776


Q ss_pred             hHHHHhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q 002400          357 ELQTQFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVA  436 (927)
Q Consensus       357 ~~~~~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~  436 (927)
                      .+ ..+++.++|.++..+.| +++.||..++++++.+++..+.....+|+..+++.++..+.+.++.+|..++.+++.++
T Consensus       393 ~~-~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~  470 (852)
T 4fdd_A          393 GM-IPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLE  470 (852)
T ss_dssp             HH-GGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            55 57899999999999999 99999999999999999876555567899999999999999999999999999999999


Q ss_pred             HHhhhhhHHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchh-hhhHHHHHHHHHHHhccCCCCCCcch
Q 002400          437 DSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKF-RDDAKQVMEVLMSLQGSQMEADDPTT  515 (927)
Q Consensus       437 ~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~  515 (927)
                      ...+..+.||++.+++.|...+....    ......++++++.++..+|+... .+|.+.+++.+++.+....+.+... 
T Consensus       471 ~~~~~~l~~~l~~ll~~L~~~l~~~~----~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-  545 (852)
T 4fdd_A          471 EEACTELVPYLAYILDTLVFAFSKYQ----HKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-  545 (852)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-
T ss_pred             HHhhHhhHhHHHHHHHHHHHHHHHhC----hHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-
Confidence            99999999999999999999987532    22334578999999999884322 3588888888886544322222334 


Q ss_pred             HHHHHHHHHHHHHhccccccchhhhHHHHHHHcccCCC--c-cccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhH
Q 002400          516 SYMLQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPD--V-IITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEK  592 (927)
Q Consensus       516 ~~~~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  592 (927)
                      ..++++++.++..+|..|.||++.+++.+++.+.....  . ...+.+.   .  ++++.                 +-+
T Consensus       546 ~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~---~--~~~d~-----------------~~~  603 (852)
T 4fdd_A          546 FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ---Y--EAPDK-----------------DFM  603 (852)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTT---S--CCCCT-----------------HHH
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---c--CCCcc-----------------hHH
Confidence            47899999999999999999999999988877643100  0 0000000   0  00011                 114


Q ss_pred             HHHHHHHHHHHHHhcccccccH--HHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 002400          593 ATACNMLCCYADELKEGFFPWI--DQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTD  670 (927)
Q Consensus       593 ~~a~~~l~~l~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (927)
                      ..++++++.++..+|.+|.||+  ..+++.+..++.+                                           
T Consensus       604 ~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~-------------------------------------------  640 (852)
T 4fdd_A          604 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQD-------------------------------------------  640 (852)
T ss_dssp             HHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTC-------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCC-------------------------------------------
Confidence            5688889999999988887776  3444333333222                                           


Q ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhH
Q 002400          671 YIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDV  750 (927)
Q Consensus       671 ~il~~ll~~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~v  750 (927)
                                                        .++.+|+.++.++++++..+|..+.+|++.++|.+.+.+.++++.+
T Consensus       641 ----------------------------------~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v  686 (852)
T 4fdd_A          641 ----------------------------------KMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISV  686 (852)
T ss_dssp             ----------------------------------SSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHH
T ss_pred             ----------------------------------CChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHH
Confidence                                              3367888888888999999999999999999999999998889999


Q ss_pred             HhhHhHHHHHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhc
Q 002400          751 RQAAVYGIGVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSC  828 (927)
Q Consensus       751 r~~a~~~lg~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~  828 (927)
                      |.+|+|++|.++.+.++.+.||+..+++.|.+++.+++.    ...+++|++.++||++..+|+.+  +++++++.|++.
T Consensus       687 ~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~----~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~  762 (852)
T 4fdd_A          687 CNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTS  762 (852)
T ss_dssp             HHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSC----CHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCC----CchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHH
Confidence            999999999999999989999999999999999987642    46799999999999999988866  499999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHH
Q 002400          829 LPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLAS  908 (927)
Q Consensus       829 Lp~~~d~~e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  908 (927)
                      ||..+|.+|+..++++||.++..+|+.+.+    ++..++..+++    +. ..+++++..+.+++..+++.+|++.|++
T Consensus       763 l~~~~d~~e~~~a~~~l~~li~~~p~~~~~----~~~~~~~~~~~----~~-~~~~~l~~~~~~~l~~~~~~~~~~~~~~  833 (852)
T 4fdd_A          763 LRNIRDNEEKDSAFRGICTMISVNPSGVIQ----DFIFFCDAVAS----WI-NPKDDLRDMFCKILHGFKNQVGDENWRR  833 (852)
T ss_dssp             HHTSCSSHHHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHHT----CS-SCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccHHHHHHHHHHHHHHHhChHhHHH----HHHHHHHHHHh----cC-CCCHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            999999999999999999999988776544    34444444443    43 4578999999999999999999888999


Q ss_pred             HHhcCCHHHHHHHHHhhc
Q 002400          909 TWSSLQPQQQLALQSILS  926 (927)
Q Consensus       909 ~~~~l~~~~~~~l~~~~~  926 (927)
                      +++++|++.|++|++.|+
T Consensus       834 ~~~~~~~~~~~~l~~~~~  851 (852)
T 4fdd_A          834 FSDQFPLPLKERLAAFYG  851 (852)
T ss_dssp             HGGGCCHHHHHHHHHTSC
T ss_pred             HHHhCCHHHHHHHHHHhC
Confidence            999999999999999875
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* Back     alignment and structure
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Back     alignment and structure
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6 Back     alignment and structure
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A Back     alignment and structure
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19 Back     alignment and structure
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae} Back     alignment and structure
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B* Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B Back     alignment and structure
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Back     alignment and structure
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A* Back     alignment and structure
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20 Back     alignment and structure
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus} Back     alignment and structure
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Back     alignment and structure
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Back     alignment and structure
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} Back     alignment and structure
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0 Back     alignment and structure
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 927
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 3e-55
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 1e-30
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-40
d1qgra_876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 4e-38
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 9e-28
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 2e-12
d1wa5c_959 a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Sacc 5e-20
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-19
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 5e-17
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 7e-15
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-14
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-07
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 9e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 3e-10
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 7e-10
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 6e-08
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 5e-10
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 6e-05
d1q1sc_434 a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus 6e-10
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 3e-09
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-09
d1wa5b_503 a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S 1e-08
d1jdha_529 a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) 1e-06
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 7e-05
d1xm9a1457 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo 7e-04
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  204 bits (519), Expect = 3e-55
 Identities = 136/938 (14%), Positives = 296/938 (31%), Gaps = 87/938 (9%)

Query: 17  PNPAHFETLI---SNLMSSSNEHRSHAEVLLSHLRQSHPDA--FALNLSRMLSSSSLPEC 71
           P+    + ++       S     +   +  L  L   +PD   + + +   L S   P  
Sbjct: 5   PDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQL-NQYPDFNNYLIFVLTKLKSEDEP-T 62

Query: 72  RAMSAILLRKHLTRDDSTSFIFTRLAPSTQANLKSVLLVQLQNETNKSIIKKICDAVSEL 131
           R++S ++L+ ++         F          +KS  L  +  +++  I   +   ++ +
Sbjct: 63  RSLSGLILKNNVKAH------FQNFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTI 115

Query: 132 AASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQ-----FVSEVLIAHGDTLH 186
           A+      +WP+L+P +   L + +    E A   L ++ +       S+VL    + + 
Sbjct: 116 ASKGELQ-NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMI 174

Query: 187 EVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKGNES 246
             F +F   ++  +R  A+     FI++   +L      +  +      L          
Sbjct: 175 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQAL------MLHIDSFTENLFALAGDEEPE 228

Query: 247 SAQEALELLIELAATEPRFLRKQLVDVVGSMLQVAEAEAVFPGFLAAPEWQKHHAVLIAL 306
             +     L+ L       L   + ++V  MLQ  + +                      
Sbjct: 229 VRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQD--------ENVALEACEFWLT 280

Query: 307 AQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQTQFHHRL 366
                 C  V++++L +++ +++N  +     +     +     +     +      HR 
Sbjct: 281 LAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRS 340

Query: 367 LPALVGAM---------DDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLL 417
                            DD +       +   +   S      +   Y D ++  +L LL
Sbjct: 341 RTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLL 400

Query: 418 QNGKQMVQEGALTALASVADSSQGQFQKYYDAVMPYLKAILVNANDKSNRMLRAKSMECI 477
           +      +     +   V  +      +     +P L   L+        ++R+ +   +
Sbjct: 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 460

Query: 478 SLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYMLQAWARLCKCLGQEFIPYM 537
           S     V         K +M  L+      ++++         A+A L +    E +PY+
Sbjct: 461 SRYAHWVVSQPPDTYLKPLMTELLKRI---LDSNKRVQEAACSAFATLEEEACTELVPYL 517

Query: 538 SVVMPPLLQSAQ--------LKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVL 589
           + ++  L+ +          +  D I T ADS     ++ E IQ +     +        
Sbjct: 518 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDE 577

Query: 590 EEK-ATACNMLCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSA 648
           ++        L   A  L+ GF P+ + V    V                + + + L  A
Sbjct: 578 DKDLFPLLECLSSVATALQSGFLPYCEPVYQRCV----------------NLVQKTLAQA 621

Query: 649 KLAVEKGQSQGRNESYVKQLTDYIIPALVEALHKEPEIDICASMLDALNESIQGKDKTAE 708
            L   +       +     +   ++  L E L    E  +  S +  L      +DK  E
Sbjct: 622 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCM-QDKMPE 680

Query: 709 ERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGIGVCAEFGGSV 768
            R+ +  +  D+ + C +        ++P L    N +   V   A + IG  +   G  
Sbjct: 681 VRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 740

Query: 769 FKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWL 826
            +P +   L +L  +I  PN          +N    +G++       +     Q +  W 
Sbjct: 741 MQPYIPMVLHQLVEIINRPN----TPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWC 796

Query: 827 SCLPLKGDLIEAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQT 886
           + L    D  E       +C+M+  +   ++    Q         A  +    DL     
Sbjct: 797 TSLRNIRDNEEKDSAFRGICTMISVNPSGVI----QDFIFFCDAVASWINPKDDLRDM-- 850

Query: 887 ASRMINLLRQLQQSLPPSTLASTWSSLQPQQQLALQSI 924
                 +L   +  +                +  L + 
Sbjct: 851 ---FCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAF 885
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 959 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query927
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 100.0
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.97
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.97
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 99.96
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.96
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.96
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.95
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.77
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.7
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.68
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 99.67
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.6
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.58
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.52
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.4
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.27
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 99.26
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.96
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.87
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.86
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 98.81
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.76
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.64
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 98.4
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.94
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 96.81
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 96.78
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 96.35
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 96.12
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 95.15
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 94.91
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 93.85
d1ho8a_477 Regulatory subunit H of the V-type ATPase {Baker's 93.02
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 92.83
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 91.66
d1w9ca_321 Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax 91.12
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 86.58
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 86.35
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 85.49
d2jaka1343 Serine/threonine-protein phosphatase 2A regulatory 85.09
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 84.86
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 81.64
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-64  Score=614.43  Aligned_cols=736  Identities=19%  Similarity=0.256  Sum_probs=582.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhChhHHHHHHHHHHhc--CCChhHHHHHHHHHHhhcccCcccccccccc
Q 002400           19 PAHFETLISNLMSSSNEHRSHAEVLLSHLRQSHPDAFALNLSRMLSS--SSLPECRAMSAILLRKHLTRDDSTSFIFTRL   96 (927)
Q Consensus        19 ~~~l~~~L~~~~s~d~~~r~~Ae~~l~~~~~~~p~~~~~~L~~il~~--~~~~~~R~~a~v~Lk~~i~~~~~~~~~w~~l   96 (927)
                      .+++.++|+.++|||+++|++|+++|+++.+ +|+ |...|..++.+  +.+..+|++|+++|||.+.++      |..+
T Consensus        10 l~ql~~~L~~~~s~d~~~r~~A~~~L~~~~~-~p~-~~~~L~~ll~~~~~~~~~~R~~A~i~Lkn~i~~~------w~~~   81 (888)
T d1qbkb_          10 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQ-YPD-FNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH------FQNF   81 (888)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTSTTTSTT-STT-TTTCTTSSSTTTSCSTTTHHHHTTGGGGGTHHHH------TTCS
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh-CCC-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------hccC
Confidence            4678888888899999999999999999977 687 56677777765  557889999999999999998      9999


Q ss_pred             CHhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhccCCCCCccchHHHHHHHhcCCChHHHHHHHHHHHHhhhhhHH
Q 002400           97 APSTQANLKSVLLVQLQNETNKSIIKKICDAVSELAASVLPDGDWPELIPFIFQCLVTFNDKIQESALLILSRMSQFVSE  176 (927)
Q Consensus        97 ~~~~~~~ik~~Ll~~l~~~~~~~vr~~~~~~i~~ia~~~~~~~~w~~ll~~l~~~l~s~~~~~r~~al~~l~~l~~~~~~  176 (927)
                      +++.++.||+.+++.|.++ ++.||++++.+++.|++.+++ +.||+++|.|.+++.++++..+++++.+|+.+++....
T Consensus        82 ~~~~~~~Ik~~ll~~l~~~-~~~vr~~~~~~i~~i~~~~~~-~~Wpell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~  159 (888)
T d1qbkb_          82 PNGVTDFIKSECLNNIGDS-SPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE  159 (888)
T ss_dssp             TTTCCHHHHHHHTTGGGCC-CSSTTTTTTTTTHHHHTTTSS-CSSTTTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHH
T ss_pred             CHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999875 899999999999999998887 78999999999999998889999999999999998776


Q ss_pred             HHHH-----hHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHhhCCCchhHHhHHhhHHHHHHHHHHHHhcC--------
Q 002400          177 VLIA-----HGDTLHEVFSKFLGSNNFDLRIAALEATVNFIMNCLPSLGEKERFLDLLPLMMRTLTEALNKG--------  243 (927)
Q Consensus       177 ~l~~-----~~~~l~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~p~ll~~l~~~l~~~--------  243 (927)
                      .+..     ..+.+++.+.++++++++.+|..|+.++..++ ....+.     +...++.+++.+.....++        
T Consensus       160 ~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~-~~~~~~-----~~~~~~~~l~~l~~~~~~~~~~vr~~~  233 (888)
T d1qbkb_         160 ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFI-ISRTQA-----LMLHIDSFTENLFALAGDEEPEVRKNV  233 (888)
T ss_dssp             HHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGG-GCCCST-----TCSHHHHCSHHHHTTSSCCCSSSTTHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-HhhhHH-----HHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            5443     34668999999999998899999999998877 433211     1111222222221111111        


Q ss_pred             -------------------------------C--hhHHHHHHHHHHHHHccC--cHHHHHHHHHHHHHHHHHh-------
Q 002400          244 -------------------------------N--ESSAQEALELLIELAATE--PRFLRKQLVDVVGSMLQVA-------  281 (927)
Q Consensus       244 -------------------------------~--~~~~~~a~~~l~~l~~~~--~~~~~~~l~~ll~~ll~~~-------  281 (927)
                                                     +  ++++..|+++|..+++..  ...+.++++.++|.++..+       
T Consensus       234 ~~~l~~l~~~~~~~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~  313 (888)
T d1qbkb_         234 CRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDI  313 (888)
T ss_dssp             HHTTTTTSCSCTTTTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence                                           1  235567788887666431  1222233333333221100       


Q ss_pred             ---------------------------------------------------------------------------hcc--
Q 002400          282 ---------------------------------------------------------------------------EAE--  284 (927)
Q Consensus       282 ---------------------------------------------------------------------------~~~--  284 (927)
                                                                                                 .++  
T Consensus       314 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il  393 (888)
T d1qbkb_         314 ILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELL  393 (888)
T ss_dssp             HHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSSSH
T ss_pred             HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHHHH
Confidence                                                                                       000  


Q ss_pred             ----CchhhhhCCcchhHHHHHHHHHHHHhhhchHHHHhhHHHHHHHHHhccCCCCHHHHHHHHHHHHHhHhhhchhHHH
Q 002400          285 ----AVFPGFLAAPEWQKHHAVLIALAQIAEGCSKVMIKNLDQVVSMVLNSFQDPHPRVRWAAINAIGQLSTDLGPELQT  360 (927)
Q Consensus       285 ----~~i~~~l~~~~~~~r~aal~al~~i~~~~~~~~~~~l~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~  360 (927)
                          +++.+.+++++|+.|++|+.++|++++++.+.+.++++++++.++..++|+++.||.+++|++|++++++.+....
T Consensus       394 ~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         394 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhh
Confidence                4556778899999999999999999999999999999999999999999999999999999999999988766656


Q ss_pred             HhHhhHHHHHHHhccCCCCchHHHHHHHHHHHhHhcCCCccccCchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHhh
Q 002400          361 QFHHRLLPALVGAMDDFQNPRVQAHAASAVLNFSENCTPDILTPYLDGIVSKLLVLLQNGKQMVQEGALTALASVADSSQ  440 (927)
Q Consensus       361 ~~~~~il~~ll~~l~~~~~~~v~~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~l~~~~~~v~~~a~~al~~l~~~~~  440 (927)
                      .++..+++.++..+.| +++.|+.+||++|..+++..+.. +.||++.+++.+..+++......+..++.++++++...+
T Consensus       474 ~~~~~~l~~ll~~l~d-~~~~V~~~a~~al~~l~~~~~~~-l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~  551 (888)
T d1qbkb_         474 TYLKPLMTELLKRILD-SNKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVG  551 (888)
T ss_dssp             HHTTTHHHHHHHHHSS-SCHHHHHHHHHHHHHHHHHHTTS-SGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHG
T ss_pred             hhhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh
Confidence            7899999999999999 89999999999999999988754 789999999999999999999999999999999999988


Q ss_pred             hhh--HHhHHHHHHHHHHHHhcccCcchhhHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHHHHhccCCCCCCcchHHH
Q 002400          441 GQF--QKYYDAVMPYLKAILVNANDKSNRMLRAKSMECISLVGMAVGKDKFRDDAKQVMEVLMSLQGSQMEADDPTTSYM  518 (927)
Q Consensus       441 ~~~--~~~~~~i~~~L~~~l~~~~~~~~~~lr~~a~~~l~~l~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  518 (927)
                      ..+  .+|++.++|.+...+....+++  ..+...++|++.++...| +.+.|+...+++.+.++...          ..
T Consensus       552 ~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~le~l~~i~~~~~-~~~~~~~~~~~~~~~~~l~~----------~l  618 (888)
T d1qbkb_         552 HHLNKPEYIQMLMPPLIQKWNMLKDED--KDLFPLLECLSSVATALQ-SGFLPYCEPVYQRCVNLVQK----------TL  618 (888)
T ss_dssp             GGGCSHHHHHHHHHHHHHHHTTSCTTC--TTHHHHHHHHHHHHHHST-TTTHHHHHHHHHHHHHHHHH----------HH
T ss_pred             ccccchHHHHHHHHHHHHHHHhcccch--HHHHHHHHHHHHHHHHhH-HHHhhhHHHHHHHHHHHHHH----------HH
Confidence            876  5789999999999887644322  233457899999999999 67899988887766553211          00


Q ss_pred             HHHHHHHHHHhccccccchhhhHHHHHHHcccCCCccccCCCCCCCCCCCcchhhhhccCCceeeechhhHHhHHHHHHH
Q 002400          519 LQAWARLCKCLGQEFIPYMSVVMPPLLQSAQLKPDVIITSADSDVDIDDEDESIQTITLGDKRIGIKTSVLEEKATACNM  598 (927)
Q Consensus       519 ~~~~~~l~~~~~~~~~~~l~~i~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~  598 (927)
                      .                      ..+....... ..             +..+.+                 -...++++
T Consensus       619 ~----------------------~~~~~~~~~~-~~-------------~~~~~~-----------------~~~~~l~~  645 (888)
T d1qbkb_         619 A----------------------QAMLNNAQPD-QY-------------EAPDKD-----------------FMIVALDL  645 (888)
T ss_dssp             H----------------------HHHHHHHCTT-TS-------------CCCCTH-----------------HHHHHHHH
T ss_pred             H----------------------HHHHHhcccc-cc-------------cchhHH-----------------HHHHHHHH
Confidence            0                      0000111000 00             000001                 12346667


Q ss_pred             HHHHHHHhcccccccHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Q 002400          599 LCCYADELKEGFFPWIDQVAPTLVPLLKFYFHEEVRKAAVSAMPELLRSAKLAVEKGQSQGRNESYVKQLTDYIIPALVE  678 (927)
Q Consensus       599 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vR~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~  678 (927)
                      ++.++..++..+.+++...                                                     .+++.++.
T Consensus       646 l~~l~~~l~~~~~~~~~~~-----------------------------------------------------~l~~~l~~  672 (888)
T d1qbkb_         646 LSGLAEGLGGNIEQLVARS-----------------------------------------------------NILTLMYQ  672 (888)
T ss_dssp             HHHHHHHHTTTTHHHHHTS-----------------------------------------------------CHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhhHh-----------------------------------------------------hHHHHHHH
Confidence            7777777776665544320                                                     01222233


Q ss_pred             HHccCChHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHhhhhhhhhHHhHHHHHHHHccCCChhHHhhHhHHH
Q 002400          679 ALHKEPEIDICASMLDALNESIQGKDKTAEERRIAICIFDDVMEHCREAALKYYDTYLPFLLEACNDKHPDVRQAAVYGI  758 (927)
Q Consensus       679 ~l~~e~d~~v~~~~l~~l~~~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~~ll~~l~~~l~d~~~~vr~~a~~~l  758 (927)
                      .+.                      +.++.+|+.|+.++|+++.+++..+.||++.++|.+...+.++++.++.+|+|++
T Consensus       673 ~l~----------------------~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~i  730 (888)
T d1qbkb_         673 CMQ----------------------DKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAI  730 (888)
T ss_dssp             HHT----------------------CSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred             HhC----------------------CCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            332                      2457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCcHHHHHHHHHHHHHhhcCCCCCCchhhhHHHHHHHHHHHHHhhcCCCC--CHhhHHHHHHhcCCCCCcHH
Q 002400          759 GVCAEFGGSVFKPLVGEALSRLDFVIRHPNALHSDNVMAYDNAVSALGKICQFHRDSI--DAAQVVPAWLSCLPLKGDLI  836 (927)
Q Consensus       759 g~l~~~~~~~~~~~~~~il~~L~~~l~~~~~~~~~~~~~~~na~~al~~l~~~~~~~~--~~~~~l~~~l~~Lp~~~d~~  836 (927)
                      |.++.+.|+.+.||++.+++.|.+++++++.    +..+++|++.|+||++..+|+.+  +++++++.||.+|+...|.+
T Consensus       731 g~ia~~~~~~~~py~~~il~~L~~il~~~~~----~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~  806 (888)
T d1qbkb_         731 GEISIQMGIEMQPYIPMVLHQLVEIINRPNT----PKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE  806 (888)
T ss_dssp             HHHHHHTGGGGGGGSHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHcCCCc----cHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcH
Confidence            9999999999999999999999999987752    46799999999999999999877  69999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccCCcccCCCCCChhHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCHH
Q 002400          837 EAKVVHAQLCSMVERSDGEILGPNHQYLPKIVTIFAEVLCGGKDLVTEQTASRMINLLRQLQQSLPPSTLASTWSSLQPQ  916 (927)
Q Consensus       837 e~~~~~~~l~~l~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  916 (927)
                      |+..+|++||.+++.+|+.+.+    +++.++.++++.    . ..+++++..+.++|..+++.+|++.|+++++++|++
T Consensus       807 ek~~~~~g~~~~i~~~p~~~~~----~l~~~~~~i~~~----~-~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~~~~~~~  877 (888)
T d1qbkb_         807 EKDSAFRGICTMISVNPSGVIQ----DFIFFCDAVASW----I-NPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLP  877 (888)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTGG----GHHHHHHHHTTC----S-SCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHHHHHHHCcHHHHH----HHHHHHHHHHhc----C-CCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHcCCHH
Confidence            9999999999999988877665    466666655542    2 456899999999999999999988899999999999


Q ss_pred             HHHHHHHhhc
Q 002400          917 QQLALQSILS  926 (927)
Q Consensus       917 ~~~~l~~~~~  926 (927)
                      .|++|++.|+
T Consensus       878 ~~~~l~~~y~  887 (888)
T d1qbkb_         878 LKERLAAFYG  887 (888)
T ss_dssp             HHHHHHHHCC
T ss_pred             HHHHHHHhhC
Confidence            9999999885
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure