Citrus Sinensis ID: 002404

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------

MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

cccccccccHHHHHHHHHHHHHHEEcccccccccccEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHccccccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHHccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHcccccccccEEEcc

cccccccccHHHHHHHHHHHHHHEEcccccccccccEEEcHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccHHHHHHHHHHccHHHHcccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHHHHHHHHHccccccccccccccHEEEEcccccEEEEccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccEcccccHHcccccccccccccEEcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHccHHHcccccHHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHHHHHEEHHccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccHHHHHHHHHHHHHHHHHHccccccccEcccHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHccccccccEEEEEEc

mattkpqrspeEIEDIILRKIFLVTLneattdadprIAYLELTAAELLSEGKDMRLSRDLMERVLVDrlsgnfpaaeppflyLINCYRRAHDELKKignmkdknLRSELEAVVKQAKKMIVSYCRIhlanpdffgsnndnnyeinnsnnkssispllpFIFAevgggidgfgnstssgsqcppgflkeffeeadfdtldPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKslvnhqwwipksvylnGRVIEmtsilgpffhvsalpdhaifksqpdvgqqcfseastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINrnssrahiqveplscassgmfVNLSAVMLRLCdpfldanltkrdkidpkyvfyssrldlrsLTALHASSEEVSEWInkgnpakadgskhfsdgENQLLQsqeatsssggasepslpagrpasigggkskypfiCECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKatqgqtpssqlnLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVggfkmplpdtcpmefacmpehFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMaspkyirnpylRSKMVEVLncwmprrsgsssatatLFEGHQMSLEYLVRNLLKLYVDieftgshtqfydKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNtaewerrpaQERQERTRLFHSQENIIRIDMKLANEDVSmlaftseqivapflLPEMIERVASMLNYFLLQLvgpqrksltlkdpekyefrpkQLLKQIVCIYVHLargdtqnlfpaaissdgrsyneQVSVISYMntshstipyclcifi

mattkpqrspeeiEDIILRKIFLVTLNeattdadprIAYLELTAAELlsegkdmrlsRDLMERVLVDRlsgnfpaaeppfLYLINCYRRAHDELKKignmkdknlrSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSeastrrpadllsSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDanltkrdkidpkYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATsssggasepslpAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLkatqgqtpssqlnlEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEmsntaewerrpaqerqertrlfhsqeniIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVgpqrksltlkdpEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYmntshstipYCLCIFI

MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGsnndnnyeinnsnnkssisPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

*************EDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNN***Y**********ISPLLPFIFAEVGGGIDGFGN*******CPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCF********ADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH**************************************************************KYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTL*****************EITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPR*******TATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEA**********************FHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIF*

************IEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHD*****************EAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFS**************TTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAH**V****CASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHA**EE*************************L*****************************KSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAE**********************TRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQ******KGVYLNFLNFLINDSIYLLDESLNKILELK**********************************RIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

**********EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLL*******************GRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

********SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGN*******************************E***************SKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPxxxxxxxxxxxxxxxxxxxxxKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVISYMNTSHSTIPYCLCIFI

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		927	2.2.26 [Sep-21-2011]
Q9LF41		1038	Probable ubiquitin conjug	yes	no	0.965	0.862	0.775	0.0
Q9ES00		1173	Ubiquitin conjugation fac	yes	no	0.716	0.566	0.288	6e-74
O95155		1302	Ubiquitin conjugation fac	no	no	0.713	0.507	0.296	7e-74
Q9HE05		1010	Ubiquitin conjugation fac	yes	no	0.834	0.766	0.263	2e-68
Q5R9G3		1066	Ubiquitin conjugation fac	no	no	0.845	0.735	0.256	3e-56
Q14139		1066	Ubiquitin conjugation fac	no	no	0.845	0.735	0.256	7e-56
Q6P7A2		1066	Ubiquitin conjugation fac	no	no	0.846	0.736	0.255	2e-55
A5PKG6		1067	Ubiquitin conjugation fac	no	no	0.842	0.731	0.251	6e-55
P54860		961	E4 ubiquitin-protein liga	yes	no	0.567	0.547	0.272	3e-50
Q09349		980	Probable ubiquitin conjug	yes	no	0.686	0.648	0.227	4e-37

>sp\|Q9LF41\|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana GN=PUB1 PE=1 SV=1	Back alignment and function desciption

 Score = 1438 bits (3723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/907 (77%), Positives = 794/907 (87%), Gaps = 12/907 (1%)

Query: 1   MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
           MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1   MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query: 61  MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
           MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct: 60  MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
           VSYCRIHL NPD FG+++  +  ++N   K ++SP+LP IFAEVG G +D FG ++SSG 
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178

Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
           Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
           KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
           PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
           +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
           +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
           ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query: 540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
           KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct: 530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query: 600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
           PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct: 590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query: 660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
           MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct: 650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query: 720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
           YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct: 710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query: 780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
           EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct: 770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query: 840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
           MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct: 830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query: 900 RSYNEQV 906
           RSYNEQ+
Sbjct: 890 RSYNEQL 896

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9ES00\|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3	Back alignment and function description

>sp\|O95155\|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1	Back alignment and function description

>sp\|Q9HE05\|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ufd2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R9G3\|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2	Back alignment and function description

>sp\|Q14139\|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2	Back alignment and function description

>sp\|Q6P7A2\|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2 SV=1	Back alignment and function description

>sp\|A5PKG6\|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1	Back alignment and function description

>sp\|P54860\|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3	Back alignment and function description

>sp\|Q09349\|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans GN=ufd-2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		927
449437816		1043	PREDICTED: probable ubiquitin conjugatio	0.965	0.858	0.810	0.0
359488959		1037	PREDICTED: probable ubiquitin conjugatio	0.962	0.860	0.811	0.0
255584323		1031	ubiquitin-protein ligase, putative [Rici	0.953	0.857	0.783	0.0
42567869		1038	putative ubiquitin conjugation factor E4	0.965	0.862	0.775	0.0
110735116		1037	UFD2 [synthetic construct]	0.964	0.862	0.775	0.0
224141459		1019	predicted protein [Populus trichocarpa]	0.942	0.857	0.778	0.0
356551046		1038	PREDICTED: probable ubiquitin conjugatio	0.962	0.859	0.772	0.0
297811677		1038	U-box domain-containing protein [Arabido	0.965	0.862	0.770	0.0
356573130		1036	PREDICTED: probable ubiquitin conjugatio	0.963	0.861	0.775	0.0
242040569		1030	hypothetical protein SORBIDRAFT_01g03217	0.949	0.854	0.633	0.0

>gi\|449437816\|ref\|XP_004136686.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus] gi\|449494681\|ref\|XP_004159617.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Cucumis sativus]	Back alignment and taxonomy information

 Score = 1522 bits (3941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 737/909 (81%), Positives = 805/909 (88%), Gaps = 14/909 (1%)

Query: 1   MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
           MAT+KPQRSPEE+EDIILRK+FL++L + T+D+D RI YLE TAAELLSEGK +R+SRD+
Sbjct: 1   MATSKPQRSPEEVEDIILRKVFLISLTD-TSDSDSRIVYLEQTAAELLSEGKPLRISRDV 59

Query: 61  MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
           MER+++DRLS + P+AEPPF YLI CYRRAHDE KKI +MKDK LRS++E  +KQAKK+ 
Sbjct: 60  MERIIIDRLSAHVPSAEPPFQYLIGCYRRAHDETKKIASMKDKTLRSDMEIALKQAKKLT 119

Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
           +SYCRIHL NP+ F S  D      NSN     SPLLP IF+EVGG  +DGFG STS G 
Sbjct: 120 ISYCRIHLGNPELFSSGADLG---TNSNT----SPLLPLIFSEVGGSSMDGFGASTSVGG 172

Query: 180 --QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPV 237
             QCPPGFL+EF  ++DFDTL+PILKGLYE+LRGSVL VSALGNFQQPLRAL +LVSFPV
Sbjct: 173 AYQCPPGFLEEFLRDSDFDTLEPILKGLYEDLRGSVLKVSALGNFQQPLRALRFLVSFPV 232

Query: 238 GVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEAST 297
           G KSLVNH WWIP   Y NGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEAST
Sbjct: 233 GAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEAST 292

Query: 298 RRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQV 357
           RRPADLLSSFTTIKTVM  LY  L +VLL+LLKNT+TRENVLEYLAEVINRNSSRAHIQV
Sbjct: 293 RRPADLLSSFTTIKTVMNNLYDGLSEVLLSLLKNTETRENVLEYLAEVINRNSSRAHIQV 352

Query: 358 EPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSE 417
           +PLSCASSGMFVNLSA+MLRLC+PFLDANLTKRDKIDPKYV YS+RL+LR LTALHASSE
Sbjct: 353 DPLSCASSGMFVNLSAIMLRLCEPFLDANLTKRDKIDPKYVCYSNRLELRGLTALHASSE 412

Query: 418 EVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKY 477
           EV+EWIN G   + D     SD E++LLQSQEA+SS   A+  S  A   A     K++Y
Sbjct: 413 EVTEWINNGTQLRTDNPGQSSDSESRLLQSQEASSSGSNATIGSSTAK--ARSSSDKTRY 470

Query: 478 PFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITR 537
           PFICECFFMTARVLNLGLLKAFSDFKHLVQDISR EDTL+TLKA QGQ P+ QL ++I R
Sbjct: 471 PFICECFFMTARVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGPAPQLEMDIAR 530

Query: 538 IEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFA 597
           +EKEIEL SQEKLCYEAQILRDG LIQ AL+FYRLM++WLV LVGGFKMPLP  CPMEFA
Sbjct: 531 LEKEIELYSQEKLCYEAQILRDGTLIQQALTFYRLMVIWLVGLVGGFKMPLPSACPMEFA 590

Query: 598 CMPEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLN 657
            MPEHFVEDAMELLIFASRIPKALDG+ LDDFMNFIIMFMASP+YIRNPYLR+KMVEVLN
Sbjct: 591 SMPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLN 650

Query: 658 CWMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAEL 717
           CW+PRRSG SS TATLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAEL
Sbjct: 651 CWIPRRSG-SSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAEL 709

Query: 718 LEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSN 777
           LEYLWQVPSHRNAWR IAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELK +EAEMSN
Sbjct: 710 LEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSN 769

Query: 778 TAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERV 837
           TAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQI APFLLPEM+ERV
Sbjct: 770 TAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERV 829

Query: 838 ASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISS 897
           ASMLNYFLLQLVGPQRKSL+LKDPEKYEFRP++LLKQIV IYVHLARGDT+N+FPAAIS 
Sbjct: 830 ASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPRELLKQIVQIYVHLARGDTENIFPAAISK 889

Query: 898 DGRSYNEQV 906
           DGRSYNEQ+
Sbjct: 890 DGRSYNEQL 898

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359488959\|ref\|XP_003633847.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Vitis vinifera] gi\|296082973\|emb\|CBI22274.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255584323\|ref\|XP_002532897.1\| ubiquitin-protein ligase, putative [Ricinus communis] gi\|223527331\|gb\|EEF29477.1\| ubiquitin-protein ligase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi|42567869|ref|NP_568313.2| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana] gi|75174048|sp|Q9LF41.1|UBE4_ARATH RecName: Full=Probable ubiquitin conjugation factor E4; AltName: Full=Plant U-box protein 1; AltName: Full=U-box domain-containing protein 1; AltName: Full=Ubiquitin-fusion degradation protein 2-like; Short=UB fusion protein 2-like gi|9755795|emb|CAC01739.1| ubiquitin-fusion degradation protein-like [Arabidopsis thaliana] gi|332004773|gb|AED92156.1| putative ubiquitin conjugation factor E4 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|110735116\|gb\|ABG89128.1\| UFD2 [synthetic construct]	Back alignment and taxonomy information

>gi\|224141459\|ref\|XP_002324089.1\| predicted protein [Populus trichocarpa] gi\|222867091\|gb\|EEF04222.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356551046\|ref\|XP_003543890.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max]	Back alignment and taxonomy information

>gi\|297811677\|ref\|XP_002873722.1\| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297319559\|gb\|EFH49981.1\| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356573130\|ref\|XP_003554717.1\| PREDICTED: probable ubiquitin conjugation factor E4-like [Glycine max]	Back alignment and taxonomy information

>gi\|242040569\|ref\|XP_002467679.1\| hypothetical protein SORBIDRAFT_01g032170 [Sorghum bicolor] gi\|241921533\|gb\|EER94677.1\| hypothetical protein SORBIDRAFT_01g032170 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		927
TAIR\|locus:2180862		1038	AT5G15400 [Arabidopsis thalian	0.965	0.862	0.772	0.0
DICTYBASE\|DDB_G0292264		1089	nosA "U box domain-containing	0.450	0.383	0.324	7.4e-94
ASPGD\|ASPL0000072757		1095	AN10556 [Emericella nidulans (	0.447	0.378	0.320	1.5e-78
ZFIN\|ZDB-GENE-020205-1		1362	ube4b "ubiquitination factor E	0.469	0.319	0.338	3.8e-76
UNIPROTKB\|F1NGY1		1182	UBE4B "Uncharacterized protein	0.469	0.368	0.328	5.6e-74
UNIPROTKB\|O95155		1302	UBE4B "Ubiquitin conjugation f	0.469	0.334	0.332	9.2e-74
RGD\|1304738		1172	Ube4b "ubiquitination factor E	0.469	0.371	0.328	2.8e-73
UNIPROTKB\|F1M8D6		1174	Ube4b "Protein Ube4b" [Rattus	0.469	0.370	0.328	2.8e-73
UNIPROTKB\|J9P2H4		1173	UBE4B "Uncharacterized protein	0.469	0.370	0.330	8.6e-73
UNIPROTKB\|A6QNS2		1362	UBE4B "UBE4B protein" [Bos tau	0.469	0.319	0.332	1.6e-72

TAIR\|locus:2180862 AT5G15400 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3588 (1268.1 bits), Expect = 0., P = 0.
 Identities = 701/907 (77%), Positives = 782/907 (86%)

Query:     1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
             MAT+KPQRSP EIEDIILRKIF VTL E+T D+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct:     1 MATSKPQRSPAEIEDIILRKIFYVTLTEST-DSDPRIVYLEMTAAEILSEGKELLLSRDL 59

Query:    61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
             MERVL+DRLSG+F  AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+ 
Sbjct:    60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119

Query:   121 VSYCRIHLANPDFFGXXXXXXXXXXXXXXXXXXXPLLPFIFAEVGGG-IDGFGNSTSSGS 179
             VSYCRIHL NPD FG                   P+LP IFAEVG G +D FG S SSG 
Sbjct:   120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFGAS-SSGV 178

Query:   180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
             Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG 
Sbjct:   179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238

Query:   240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
             KSLV+H+WW+P+  Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct:   239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298

Query:   300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
             PADLLSSF+TIK  M  LY  L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct:   299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358

Query:   360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
             +SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F   RL L  LTALHASSEEV
Sbjct:   359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418

Query:   420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
             +EWI K   A A+ +   +  E++LLQS+EATSSS  AS      G+ A      +KY F
Sbjct:   419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469

Query:   480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIE 539
             ICECFFMTARVLNLGLLKA SDFKHL QDISR ED LATLKA + Q PS QL L+I+R+E
Sbjct:   470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529

Query:   540 KEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPDTCPMEFACM 599
             KE+ELSSQEKLC+EAQILRDGD IQ ALSFYRLM+VWLV LVGGFKMPLP TCPMEF+CM
Sbjct:   530 KELELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSCM 589

Query:   600 PEHFVEDAMELLIFASRIPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW 659
             PEHFVEDAMELLIFASRIPKALDGV LDDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNCW
Sbjct:   590 PEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNCW 649

Query:   660 MPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 719
             MPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE
Sbjct:   650 MPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLE 709

Query:   720 YLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTA 779
             YLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNTA
Sbjct:   710 YLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNTA 769

Query:   780 EWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVAS 839
             EWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA+
Sbjct:   770 EWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVAN 829

Query:   840 MLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDG 899
             MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSDG
Sbjct:   830 MLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSDG 889

Query:   900 RSYNEQV 906
             RSYNEQ+
Sbjct:   890 RSYNEQL 896

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

DICTYBASE\|DDB_G0292264 nosA "U box domain-containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000072757 AN10556 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-020205-1 ube4b "ubiquitination factor E4B, UFD2 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NGY1 UBE4B "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|O95155 UBE4B "Ubiquitin conjugation factor E4 B" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|1304738 Ube4b "ubiquitination factor E4B" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1M8D6 Ube4b "Protein Ube4b" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P2H4 UBE4B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QNS2 UBE4B "UBE4B protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LF41	UBE4_ARATH	No assigned EC number	0.7750	0.9654	0.8622	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00021032001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (995 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		927
pfam10408		625	pfam10408, Ufd2P_core, Ubiquitin elongating factor	0.0
COG5113		929	COG5113, UFD2, Ubiquitin fusion degradation protei	7e-72

>gnl\|CDD\|220735 pfam10408, Ufd2P_core, Ubiquitin elongating factor core	Back alignment and domain information

 Score =  593 bits (1531), Expect = 0.0
 Identities = 236/655 (36%), Positives = 373/655 (56%), Gaps = 75/655 (11%)

Query: 266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVL 325
           LGP   +S LPD       P+V ++ FS+ ++R    + +  ++++  +  L  +L  + 
Sbjct: 1   LGPLLSLSPLPD-----DFPEVAEKYFSDPNSRSKQQINALISSLRQTLSNLIDNLFQIF 55

Query: 326 LALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLD 384
            +LL+ + ++RE  L + A++IN N  R  +QV+P + +S G  +NL+AV+LRLC PFLD
Sbjct: 56  KSLLRASPESREKTLSWFAKIINLNHKRRKMQVDPKTLSSDGFMLNLTAVLLRLCQPFLD 115

Query: 385 ANLTKRDKIDPKYVFY--SSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGEN 442
              +K DKIDP Y+    S R+D++  T L+A  EE  E+ ++ +   A           
Sbjct: 116 PTSSKIDKIDPDYLLRKLSKRIDIKEETRLNADEEEADEFYSEKSEEGAKN--------- 166

Query: 443 QLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDF 502
                                               FI ECFF+T R L+LG+      +
Sbjct: 167 ------------------------------------FITECFFLTLRALHLGIGPLIEKY 190

Query: 503 KHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDL 562
           K L++++ R +D L  L+ ++          ++ R+EK++E+ S EKL  E  +L D  L
Sbjct: 191 KRLLRELKRLQDELEELEQSRSN------WAQLKRLEKQLEILSAEKLSLEGFLL-DPSL 243

Query: 563 IQHALSFYRLMIVWLVDLV---------GGFKMPLPDTCPMEFACMPEHFVEDAMELLIF 613
           +Q  L F   + VWL+ +             K+PLP   P  F  +PE F+ED ++ ++F
Sbjct: 244 LQRLLQFLSFVAVWLLRVADPKNLYPEGQKLKLPLPKKVPEAFKYLPEFFIEDIVDFILF 303

Query: 614 ASR-IPKALDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMP-RRSGSSSATA 671
                P  LD + LD  + F I+FM SP+YI+NP+L++K+VE+L   +P   +      +
Sbjct: 304 LFSNSPLVLDYIKLDSIIEFCIIFMGSPEYIKNPHLKAKLVEILFIGLPPLDNSQKGFLS 363

Query: 672 TLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAW 731
            +FEGH ++ E+L+  LLK Y+D+E TG+ TQFYDKFNIR+ I+++LEYLW+ PS+R   
Sbjct: 364 DIFEGHPLAKEHLLPALLKFYIDVEKTGASTQFYDKFNIRYYISQILEYLWKNPSYRQQL 423

Query: 732 RQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQE 791
           R+ +KE     ++ F+N L+ND+ YLLDESL+ + E+K ++ E+ + AEWE    +ER+E
Sbjct: 424 RKESKENND-FFVRFINLLLNDATYLLDESLSYLKEIKQLQKELQDRAEWESLSQEEREE 482

Query: 792 RTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGP 851
           R       E   +  ++LANE V +L   + +I  PFL PE+++R+A+MLNY L QLVGP
Sbjct: 483 RESELRQLERQAKSYLQLANETVKLLKLLTSEIPKPFLSPEIVDRLAAMLNYNLDQLVGP 542

Query: 852 QRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQV 906
           +  +L +K+PEKY F PKQLL  IV IY++L+R D    F  A++ DGRSY+ ++
Sbjct: 543 KCSNLKVKNPEKYGFDPKQLLSDIVDIYLNLSRSDE---FIEAVARDGRSYSPEL 594

This is the most conserved part of the core region of Ufd2P ubiquitin elongating factor or E4, running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C-terminus, pfam04564, which has ligase activity. Length = 625

>gnl\|CDD\|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		927
PF10408		629	Ufd2P_core: Ubiquitin elongating factor core; Inte	100.0
COG5113		929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	100.0
KOG2042		943	consensus Ubiquitin fusion degradation protein-2 [	100.0
KOG4692		489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.35

>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38	Back alignment and domain information

Probab=100.00  E-value=2.7e-146  Score=1315.99  Aligned_cols=581  Identities=42%  Similarity=0.770  Sum_probs=493.5

Q ss_pred             cccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChhhHHHHHHHHHH
Q 002404          266 LGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAE  344 (927)
Q Consensus       266 LGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~~I~~~Llr-~~~sRe~vL~w~a~  344 (927)
                      |||||++|++|++     +|.+++.||.++.+++++++++++.+||..++.+++.||+|+++||| ++++|+++|+|||.
T Consensus         1 LGp~l~~S~~~~~-----~~~~~~~~F~~~~~~~~~~~~~~~~~lr~~l~~~~~~l~~i~~~LLr~s~~sR~~~L~w~a~   75 (629)
T PF10408_consen    1 LGPFLSLSPLPDD-----QPEVAEQFFSNPSKRNQQDVESSISSLRQELQNIQDQLHQIFKSLLRASPESRERVLSWFAQ   75 (629)
T ss_dssp             THHHHT--TTS--------HHHHHHHTTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             CCCCeecCCCCCC-----ccHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Confidence            8999999999988     48999999999999999999999999999999999999999999999 89999999999999


Q ss_pred             HHHhchhhhcc--ccCCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccC----ccc--CCCcCCCCcccccCCh
Q 002404          345 VINRNSSRAHI--QVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKY----VFY--SSRLDLRSLTALHASS  416 (927)
Q Consensus       345 vi~~N~~R~k~--~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y----~~~--~~~id~~~eTri~a~~  416 (927)
                      |++.|++|+||  ++++..+||||||+|+++||+|||+||+|+..+|++||||+|    +.+  ++++|+++|||++++.
T Consensus        76 ~l~~N~~R~k~~~~~~~~~~aSDGFmlNl~~VLl~L~~Pf~~~~~~K~~kID~~Y~~~~~~~~~~~~vd~~~eT~l~~~~  155 (629)
T PF10408_consen   76 ILNANAKRAKMWLQVDPRTVASDGFMLNLTAVLLRLCQPFMDPSFSKIDKIDPDYCAHPLLRPRNSRVDISEETRLNATE  155 (629)
T ss_dssp             HHHT-GGGGSS--S--GGGS--HHHHHHHHHHHHHHHGGGGSTT-TTGGGS-TTT-----TSS--SSS--TT--BSSB-H
T ss_pred             HHHhchhhhhhhhccccccCCCcHHHHHHHHHHHHHHHhhhhhhhhhHhhcCcchhhhhhccccccccCcccccccCCCh
Confidence            99999999999  999999999999999999999999999999999999999999    455  7899999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHHhchH
Q 002404          417 EEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLL  496 (927)
Q Consensus       417 ee~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFiTecFFLT~~~lhlg~~  496 (927)
                      +++++|++...                                             ..+++||||||||||++++|||+.
T Consensus       156 ~e~~~~~~~~~---------------------------------------------~~~~~nFiTe~FFLT~~a~hlg~~  190 (629)
T PF10408_consen  156 EESEEWYEDLP---------------------------------------------NPGPPNFITECFFLTLRALHLGLL  190 (629)
T ss_dssp             HHHHHHHHHCT---------------------------------------------TSTS--HHHHHHHHHHHHHHHTHH
T ss_pred             hHHhhhhcccc---------------------------------------------cCCCCCchHHHHHHHHHHHHHhHH
Confidence            99999997542                                             223489999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHHHHHhHHHHhhhhccChHHHHHHHHHHHHHHHH
Q 002404          497 KAFSDFKHLVQDISRAEDTLATLKATQGQTPSSQLNLEITRIEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVW  576 (927)
Q Consensus       497 ~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~L~dp~l~~~~~~F~~~~~~w  576 (927)
                      |++++|+++.|+++++++.++++++.          ..+++++++++.+.+.++|++| +|+||++++++++|+++++.|
T Consensus       191 ~~~~~~~~~~r~l~~lq~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~e~-~L~~p~~~~~~~~F~~~~~~w  259 (629)
T PF10408_consen  191 PAIQRYKRLLRELRRLQRELEELEAS----------AQLKRLKEQLDKLMSEKLSLEA-VLLDPDFLSRCLQFYNFVAQW  259 (629)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHHHHHH-HHT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999987632          5678999999999999999999 799999999999999999999


Q ss_pred             HHHHhc---------CCCCCCCCCCCccccccchHHHHhHHHHHHHHhhc---CccccccchHHHHHHHHHHhCCCCCcc
Q 002404          577 LVDLVG---------GFKMPLPDTCPMEFACMPEHFVEDAMELLIFASRI---PKALDGVLLDDFMNFIIMFMASPKYIR  644 (927)
Q Consensus       577 L~rl~~---------~~~lPLp~~~p~~f~~lPE~~iEdi~d~~~f~~r~---p~~l~~~~~~~li~f~i~~l~~~~~ik  644 (927)
                      |+++++         +.++|||+++|+.|++||||+||||+||+.|++|+   |..+.+..++++++|||+||++|+||+
T Consensus       260 L~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~~~l~~~~~~~l~~f~i~fm~s~~~ik  339 (629)
T PF10408_consen  260 LLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSPDLLSSQDLDELVTFCITFMGSPEYIK  339 (629)
T ss_dssp             HHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-TTTT-T-THHHHHHHHHHHHH-TTS--
T ss_pred             HHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCChhhhhhhhHHHHHHHHHHHhCChhhcC
Confidence            999993         36789999999999999999999999999999998   888899999999999999999999999


Q ss_pred             ChhhhhhHHHHHHhhcCCCC-CCcchhHHhhhhccchHHHHHHHHHHHhHhhhccCCCcccccccchhhhHHHHHHHHhC
Q 002404          645 NPYLRSKMVEVLNCWMPRRS-GSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQ  723 (927)
Q Consensus       645 NPhLraklvevL~~~~p~~~-~~~~~~~~lf~~~~l~~~~L~~aLm~fYvdvE~TG~~sqFYdKFn~R~~I~~Il~~LW~  723 (927)
                      |||||||+||+|+.++|... +.++.+.++|++||++++||+||||+||||||+||+|+|||||||+||+|+.||++||+
T Consensus       340 NP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE~Tg~~~qfydKFn~R~~i~~il~~lw~  419 (629)
T PF10408_consen  340 NPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVEKTGASTQFYDKFNIRYHISQILKYLWK  419 (629)
T ss_dssp             -HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCCCT-SSSSSTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCccchhcccchhhHHHHHHHHcC
Confidence            99999999999999988776 55677888999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHhhhhh
Q 002404          724 VPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENII  803 (927)
Q Consensus       724 ~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I~~~q~~~~d~~~w~~l~~eer~e~~~~l~~~er~~  803 (927)
                      +|.||++|+++++++ +++|+|||||||||+||||||||++|++||++|.+++|.++|+++++|+|+++++.++++||+|
T Consensus       420 ~~~~r~~~~~~~~~~-~~~F~rFvn~liND~~~llDE~l~~L~~I~~~q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~  498 (629)
T PF10408_consen  420 NPEYREQFIKEAKEN-PPLFVRFVNMLINDTTFLLDESLSKLKEIKELQEEMADQSEWNALSQEERQEKESQLEQAERQA  498 (629)
T ss_dssp             -HHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999985 7899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHhhcCCCcCCccccCCccCCCChHHHHHHHHHHHHhcc
Q 002404          804 RIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLA  883 (927)
Q Consensus       804 rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~  883 (927)
                      |||++||++|++||.+||+++|+||++||||||||+||||||++||||||++||||||++|||+||+||.+||+||+||+
T Consensus       499 rs~~~l~~~t~~~l~~lt~~~~~~Fl~~elv~RlA~MLn~~L~~L~Gpk~~~LkVk~~~~y~F~P~~ll~~i~~iy~~l~  578 (629)
T PF10408_consen  499 RSYLQLANETLKMLNYLTSEIPEPFLRPELVDRLAAMLNYNLDQLVGPKCSELKVKNPEKYGFDPKELLSQIVDIYLNLS  578 (629)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-GGGGCSHHHHHHHHHHHHHHHHHHHSHHHHT---SSGGGGT--HHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHcCCchhcccCCChhhcCCcHHHHHHHHHHHHhhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccccchhhHhhhhcCCCChhhhHHHhh
Q 002404          884 RGDTQNLFPAAISSDGRSYNEQVSVISY  911 (927)
Q Consensus       884 ~~d~~~~F~~AVa~DgRSy~~elf~i~~  911 (927)
                      +.   ++||+|||+|||||++|+|....
T Consensus       579 ~~---~~F~~ava~D~Rsy~~~lf~~a~  603 (629)
T PF10408_consen  579 DS---DKFVQAVANDGRSYSPELFEKAV  603 (629)
T ss_dssp             T----HHHHHHHHH-TTT--HHHHHHHH
T ss_pred             Cc---hHHHHHHHhCCCCCCHHHHHHHH
Confidence            64   37999999999999999976553

It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		927
2qiz_A		982	Structure Of The Yeast U-Box-Containing Ubiquitin L		9e-52
3m62_A		968	Crystal Structure Of Ufd2 In Complex With The Ubiqu		1e-51
2qj0_A		982	Structure Of The Yeast U-Box-Containing Ubiquitin L		6e-49

>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982

Back alignment and structure

Iteration: 1

Score = 202 bits (513), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 166/610 (27%), Positives = 283/610 (46%), Gaps = 84/610 (13%) Query: 333 DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDK 392 ++R +++ Y A + N+N R +S+G N++ +++R PFLD + K DK Sbjct: 298 NSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDK 357 Query: 393 IDPKYVFYSSR-LDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEAT 451 ID Y S +DL T L++ +E + +K N AD Sbjct: 358 IDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK-NRKTAD------------------- 397 Query: 452 SSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGL-------------LKA 498 SK FI +CFF+T L+ GL +KA Sbjct: 398 -----------------------SKPNFISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKA 434 Query: 499 FSDFKHLVQDISRAEDTLATLKATQ--------GQTPSSQLNLEITRIEKEIELSSQEKL 550 + V+ I+ D A Q T S + L+ + ++L + + Sbjct: 435 LKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESLRFALQGFFAHRSLQLEVFDFI 494 Query: 551 CYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKMPLPD----TCPMEFACMPEHFVED 606 C + L +H F ++ + + D +G + D P+ F PE VE Sbjct: 495 CGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEG 554 Query: 607 AMELLIFASRIPKA--LDGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRR 663 + ++ S+ + L F+ F M + P+ + NP+L+ K+V++L+ MP Sbjct: 555 PVNYSLYISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLT 614 Query: 664 SGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW- 722 S +FE ++ + L+ LL YV +E TGS +QFYDKFN R++I+ +LE L+ Sbjct: 615 DNSPGFMMDIFEHDELVNKNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYY 674 Query: 723 QVPSHRNA--WRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAE 780 ++PS++N W+ + ++ F+ ++ND +LLDE L+ + E+ I+ E+ N A Sbjct: 675 KIPSYKNQLIWQS---QNNADFFVRFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRAR 731 Query: 781 WE--RRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 838 R ++++ +TRL S + LA++ + + S+ I A F+ PE++ R+A Sbjct: 732 GAPPTREEEDKELQTRL-ASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLA 790 Query: 839 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 898 SMLNY L LVGP+ L +KDP+ Y F PK LLK + +Y++L+ Q+ F +A++ D Sbjct: 791 SMLNYNLESLVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKD 847 Query: 899 GRSYNEQVSV 908 RS+N + V Sbjct: 848 ERSFNRNLFV 857

PyMOL of 2qiz

>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The Ubiquitin-Like (Ubl) Domain Of Rad23 Length = 968

Back alignment and structure

>pdb|2QJ0|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase Ufd2p Length = 982

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		927
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968	Back alignment and structure

 Score =  641 bits (1654), Expect = 0.0
 Identities = 199/938 (21%), Positives = 371/938 (39%), Gaps = 138/938 (14%)

Query: 9   SPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDR 68
           SPE      +  I  +T + +            L  +E + +G    L  D ++ +L+ +
Sbjct: 2   SPEFRSMTAIEDILQITTDPS------DTRGYSLLKSEEVPQGS--TLGVDFIDTLLLYQ 53

Query: 69  LSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHL 128
           L+ N    + PF YL +C+RR   + +     K+K     L +  ++  ++++ Y  + L
Sbjct: 54  LTEN-EKLDKPFEYLNDCFRRNQQQKRI---TKNKPNAESLHSTFQEIDRLVIGYGVVAL 109

Query: 129 ANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKE 188
              +F  +                    +  I + V                    FL +
Sbjct: 110 QIENFCMNGA--------------FINYITGIVSNVN---------------SYTDFLSQ 140

Query: 189 F-----FEEADFDTLDPILKGLYENLRGSVLNVSALGN--FQQPLRALLYLVSFPVGVKS 241
                  E    D L+ +   L E     V +     +  +   L      V+F    + 
Sbjct: 141 IIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEI 200

Query: 242 LVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPA 301
                 +         +  E  +ILGP   +S +           V  + + +   R   
Sbjct: 201 FTKIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQ 251

Query: 302 DLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPL 360
                  +++   + +   L  ++  L++ + ++R +++ Y A + N+N  R        
Sbjct: 252 QTAMIHESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFK 311

Query: 361 SCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS-RLDLRSLTALHASSEEV 419
             +S+G   N++ +++R   PFLD +  K DKID  Y    S  +DL   T L++  +E 
Sbjct: 312 ELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEA 371

Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
             + +K                                                 SK  F
Sbjct: 372 DAFYDKNRKTA-------------------------------------------DSKPNF 388

Query: 480 ICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTP--SSQLNLEITR 537
           I +CFF+T   L+ GL    S  + +  +I   ++ +  +K         +  +  ++++
Sbjct: 389 ISDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAANHDVFARFITAQLSK 448

Query: 538 IEKEIELSSQEKLCYEAQILRDGDLIQHALSFYRLMIVWLVDLVGGFKM----------- 586
           +EK ++ +   +   +        L      F      +L+ +V                
Sbjct: 449 MEKALKTTESLRFALQGFFA-HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLI 507

Query: 587 -------------PLPDTCPMEFACMPEHFVEDAMELLIFASRI--PKALDGVLLDDFMN 631
                         L    P+ F   PE  VE  +   ++ S+           L  F+ 
Sbjct: 508 PDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYISKYQTSPIFRNPRLGSFVE 567

Query: 632 FIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRNLLK 690
           F  M +  P+ + NP+L+ K+V++L+   MP    S      +FE  ++  + L+  LL 
Sbjct: 568 FTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLD 627

Query: 691 LYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNF 749
            YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS++N     + +     ++ F+  
Sbjct: 628 FYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS-QNNADFFVRFVAR 686

Query: 750 LINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPA-QERQERTRLFHSQENIIRIDMK 808
           ++ND  +LLDE L+ + E+  I+ E+ N A        +E +E      S     +    
Sbjct: 687 MLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCG 746

Query: 809 LANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRP 868
           LA++ + +    S+ I A F+ PE++ R+ASMLNY L  LVGP+   L +KDP+ Y F P
Sbjct: 747 LADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQSYSFNP 806

Query: 869 KQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQV 906
           K LLK +  +Y++L+       F +A++ D RS+N  +
Sbjct: 807 KDLLKALTTVYINLSEQSE---FISAVAKDERSFNRNL 841

PyMOL of 3m62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		927
3m62_A		968	Ubiquitin conjugation factor E4; armadillo-like re	100.0

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A	Back alignment and structure

Probab=100.00  E-value=2e-186  Score=1669.72  Aligned_cols=801  Identities=25%  Similarity=0.425  Sum_probs=724.7

Q ss_pred             hHHHHHHHHHHhheeeccCCcCCCCCCeeehhhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChHhHHHHHHHH
Q 002404           10 PEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRR   89 (927)
Q Consensus        10 ~~~~~~~~l~~if~vTl~~~~~~~~~~~~yL~~l~~el~~~~~~~~l~~d~ld~il~~rl~~~~~~~~~~~~YL~~c~~R   89 (927)
                      +|.-.-.+|++||+||+||++ .+|  ..|+.  +.|| ++|.  .|+.|++|++|++||++.+ +.++||+||++||+|
T Consensus         3 ~~~~~~~~l~~if~vtl~~~~-~~~--~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R   73 (968)
T 3m62_A            3 PEFRSMTAIEDILQITTDPSD-TRG--YSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRR   73 (968)
T ss_dssp             CHHHHHHHHHHHHTEESSCCS-SSS--CEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHeeecCccc-cCC--ceEee--HHHh-ccCC--CCChhhHHHHHHHHHhcCC-CCCCcHHHHHHHHHH
Confidence            444446679999999999984 234  45555  5566 3444  5999999999999999876 447999999999999


Q ss_pred             HHHHHHHhcCCCCcchhhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchHHHHhhcCCCCC
Q 002404           90 AHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGID  169 (927)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~i~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~~~~  169 (927)
                      |.+++|+++++   ...+++.++++++++||||||++++++||||++++              ..++++.++.+.+    
T Consensus        74 ~~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~----  132 (968)
T 3m62_A           74 NQQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN----  132 (968)
T ss_dssp             HHHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG----
T ss_pred             HHHHHHhcccC---CCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCc--------------hHHHHHHHHhccc----
Confidence            99999988542   23467789999999999999999999999998654              2357788877532    


Q ss_pred             CCCCCCCCCCCCChHHHHHHHHhh-ccCChHHHHHHHHHHHH----HHhhhcCcccc--chhHHHHHHHhhCChhHHHHh
Q 002404          170 GFGNSTSSGSQCPPGFLKEFFEEA-DFDTLDPILKGLYENLR----GSVLNVSALGN--FQQPLRALLYLVSFPVGVKSL  242 (927)
Q Consensus       170 ~~~~~~~~~~~~~~~Fl~~li~~~-~~d~l~~if~~i~~~l~----~~~~~~~~~~~--~~~~l~~l~~L~~~k~ia~~l  242 (927)
                                 ...+||.++++|+ ++|++.++|+|+|..+.    ..+.++++.++  |++++++|..|+++||||++|
T Consensus       133 -----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l  201 (968)
T 3m62_A          133 -----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIF  201 (968)
T ss_dssp             -----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHG
T ss_pred             -----------chHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCccHHHHHH
Confidence                       2359999999999 45559999888888884    45566777665  999999999999999999999


Q ss_pred             hcCCCCCCCccCCCchhhhhhcccccccccCCCCCCccccCCchhhhhccCCCcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 002404          243 VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG  322 (927)
Q Consensus       243 ~~~~~f~p~~~~~~G~~~E~~SlLGp~l~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~v~~~~~sl~~~l~~~~~~L~  322 (927)
                      +++|+|+|+. ..+|+++|+.|+|||||++||++        |+|+.+||+++.+++++++.++++++|.+++.++++||
T Consensus       202 ~~~~~f~P~~-~~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~  272 (968)
T 3m62_A          202 TKIDGFFADY-SCKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLF  272 (968)
T ss_dssp             GGSTTSSCCT-TCCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCcccCCCC-CccHHHHHHHHhHHhhhhcccCC--------cchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999985 36899999999999999999994        78899999999999999999999999999999999999


Q ss_pred             HHHHHHhc-ChhhHHHHHHHHHHHHHhchhhhccccCCCCcCChhhHHHHHHHHHHhhhhhcCCCccccCccCccCcccC
Q 002404          323 DVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS  401 (927)
Q Consensus       323 ~I~~~Llr-~~~sRe~vL~w~a~vi~~N~~R~k~~~d~~~~aSDGFmlNl~~VLlrL~~PF~d~~~~KidkID~~Y~~~~  401 (927)
                      +|+++||| |+++|++||+|||.|++.||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||+++
T Consensus       273 ~I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~  352 (968)
T 3m62_A          273 FIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNP  352 (968)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSC
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHHHhCcHHHhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCC
Confidence            99999999 89999999999999999999999999999999999999999999999999999999999999999999986


Q ss_pred             C-CcCCCCcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCh
Q 002404          402 S-RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFI  480 (927)
Q Consensus       402 ~-~id~~~eTri~a~~ee~~~~~~~~~p~~~~~~~~~~~~e~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFi  480 (927)
                      + |+|+++|||||+|++|+++||++..+                                           ...+++|||
T Consensus       353 ~~ridi~~ETrlna~~~e~~~~~~~~~~-------------------------------------------~~~~~~nFI  389 (968)
T 3m62_A          353 SLFIDLSGETRLNSDFKEADAFYDKNRK-------------------------------------------TADSKPNFI  389 (968)
T ss_dssp             CSSSCCTTCCBSSCCHHHHHHHHHHHCC-------------------------------------------CSSCCCCHH
T ss_pred             CCCCCCChhhhhcCCHHHHHHHHhhccc-------------------------------------------CCCCCCCch
Confidence            5 59999999999999999999975320                                           134588999


Q ss_pred             hhHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCch----HHHHHHHHHHHHHHHHHHhHHHHhhhh
Q 002404          481 CECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQI  556 (927)
Q Consensus       481 TecFFLT~~~lhlg~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~~~~~  556 (927)
                      |||||||++|||||+++++.+|+++.++|++++++++++++.++  .+|    ..++++++++++++++.+.++|+++ +
T Consensus       390 tecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~-~  466 (968)
T 3m62_A          390 SDCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQG-F  466 (968)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999987632  223    2467899999999999999999999 8


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHhcC--------CCCCCC----------------CCCCccccccchHHHHhHHHHHH
Q 002404          557 LRDGDLIQHALSFYRLMIVWLVDLVGG--------FKMPLP----------------DTCPMEFACMPEHFVEDAMELLI  612 (927)
Q Consensus       557 L~dp~l~~~~~~F~~~~~~wL~rl~~~--------~~lPLp----------------~~~p~~f~~lPE~~iEdi~d~~~  612 (927)
                      |+||.++.++++|++++++||+|+++|        +++|||                +++|.+|+|+|||+||||+||+.
T Consensus       467 l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~  546 (968)
T 3m62_A          467 FAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSL  546 (968)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHHHhHHHHHH
Confidence            999999999999999999999999964        678887                36899999999999999999999


Q ss_pred             HHhhc-Cccc-cccchHHHHHHHHHHhCCCCCccChhhhhhHHHHHHh-hcCCCCCCcchhHHhhhhccchHHHHHHHHH
Q 002404          613 FASRI-PKAL-DGVLLDDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLL  689 (927)
Q Consensus       613 f~~r~-p~~l-~~~~~~~li~f~i~~l~~~~~ikNPhLraklvevL~~-~~p~~~~~~~~~~~lf~~~~l~~~~L~~aLm  689 (927)
                      |+.|+ |+.+ .+..++++++|||+||+||+|||||||||||||+|+. ++|..++++|.+.++|++|+++++||++|||
T Consensus       547 F~~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm  626 (968)
T 3m62_A          547 YISKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALL  626 (968)
T ss_dssp             HHTTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHHHHHHHHHH
Confidence            99999 8655 5678999999999999999999999999999999985 7898777778899999999999999999999


Q ss_pred             HHhHhhhccCCCcccccccchhhhHHHHHHHHh-CChhhHHHHHHHHHHhccchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002404          690 KLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL  768 (927)
Q Consensus       690 ~fYvdvE~TG~~sqFYdKFn~R~~I~~Il~~LW-~~~~~r~~~~~~a~~~~~~~FvrFvnlLiND~tfLLDEsL~~L~~I  768 (927)
                      +||||||+||+|+|||||||+||+|+.||++|| ++|.||++|+++++++ +++|+|||||||||+||||||||++|++|
T Consensus       627 ~fYvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I  705 (968)
T 3m62_A          627 DFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEV  705 (968)
T ss_dssp             HHHHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999 9999999999999875 78999999999999999999999999999


Q ss_pred             HHHHHHhccchhhcCC-CHHHHHHHHHHHHHhhhhhhhhhhcHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHh
Q 002404          769 KVIEAEMSNTAEWERR-PAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQ  847 (927)
Q Consensus       769 ~~~q~~~~d~~~w~~l-~~eer~e~~~~l~~~er~~rs~~~La~etv~ml~~lT~~i~~~Fl~peivdRlA~MLNynL~~  847 (927)
                      |++|.+++|.+.|... .+|+|+++++.++++||+|||||+||++|++||++||+++|+||++||||+|||+||||||++
T Consensus       706 ~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~  785 (968)
T 3m62_A          706 HNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLES  785 (968)
T ss_dssp             HHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHH
Confidence            9999999988777653 356789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCcCCccccCCccCCCChHHHHHHHHHHHHhcccccccchhhHhhhhcCCCChhhhHHHh
Q 002404          848 LVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQVSVIS  910 (927)
Q Consensus       848 LvGPkc~~LKVknpekY~F~Pk~LL~~i~~IYlnL~~~d~~~~F~~AVa~DgRSy~~elf~i~  910 (927)
                      ||||||++||||||+||||+||+||.+||+||+||++.   ++|++|||+|||||++++|...
T Consensus       786 LvGPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~~---~~F~~aVa~DgRSy~~elF~~a  845 (968)
T 3m62_A          786 LVGPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSEQ---SEFISAVAKDERSFNRNLFVRA  845 (968)
T ss_dssp             HHSHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTTC---HHHHHHHHHCTTTCCHHHHHHH
T ss_pred             hcCccccccccCCHhhcCCCHHHHHHHHHHHHhhccCC---hHHHHHHHhcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999963   4799999999999999998765

PyMOL of 3m62

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00